Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
A2M	0	genome.wustl.edu	37	12	9254262	9254262	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	9254262	9254262	G	T	SNP	A2M	NM_000014.4	human	genbank	58_37c	-1	reviewed	nonsense	c.1275	p.Y425*	0.969	NULL	HMMPfam_A2M,HMMPfam_A2M_N,superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_recep,superfamily_Alpha-macroglobulin receptor domain,PatternScan_TONB_DEPENDENT_REC_1,HMMPfam_A2M_N_2,HMMPfam_A2M_comp,HMMPfam_Thiol-ester_cl,PatternScan_ALPHA_2_MACROGLOBULIN	-	no_errors
ADAM12	0	genome.wustl.edu	37	10	127789701	127789701	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	127789701	127789701	A	G	SNP	ADAM12	NM_003474.4	human	genbank	58_37c	-1	reviewed	missense	c.860	p.L287P	1.000	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMPfam_ADAM_CR,HMMSmart_SM00608,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ADAMTS2	0	genome.wustl.edu	37	5	178549700	178549700	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	178549700	178549700	G	C	SNP	ADAMTS2	NM_014244.2	human	genbank	58_37c	-1	reviewed	missense	c.3033	p.I1011M	0.936	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ALDH1L1	0	genome.wustl.edu	37	3	125855661	125855661	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	3	125855661	125855661	G	A	SNP	ALDH1L1	NM_012190.2	human	genbank	58_37c	-1	reviewed	silent	c.1290	p.F430	0.998	HMMPfam_Aldedh,superfamily_Aldehyde_DH/Histidinol_DH	PatternScan_GART,HMMPfam_Formyl_trans_N,superfamily_formyl_transf,HMMPfam_Formyl_trans_C,PatternScan_PHOSPHOPANTETHEINE,superfamily_ACP_like,superfamily_FMT_C_like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_Aldehyde_DH/Histidinol_DH	-	no_errors
AMAC1L3	0	genome.wustl.edu	37	17	7386217	7386217	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	7386217	7386217	T	C	SNP	AMAC1L3	NM_001102614.1	human	genbank	58_37c	+1	provisional	missense	c.914	p.V305A	0.997	HMMPfam_DUF6,superfamily_SSF103481	HMMPfam_DUF6,superfamily_SSF103481	-	no_errors
ANK2	0	genome.wustl.edu	37	4	114177049	114177049	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	114177049	114177049	C	G	SNP	ANK2	NM_001148.4	human	genbank	58_37c	+1	reviewed	silent	c.1149	p.L383	0.956	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
APOF	0	genome.wustl.edu	37	12	56755197	56755197	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	56755197	56755197	C	G	SNP	APOF	NM_001638.2	human	genbank	58_37c	-1	reviewed	missense	c.793	p.D265H	0.091	NULL	NULL	-	no_errors
ARR3	0	genome.wustl.edu	37	X	69496109	69496110	+	Frame_Shift_Del	DEL	AT	AT	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	X	69496109	69496110	AT	-	DEL	ARR3	NM_004312.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.323_324	p.N108fs	0.998:0.997	HMMPfam_Arrestin_N,superfamily_E set domains	HMMPfam_Arrestin_N,HMMPfam_Arrestin_C,superfamily_E set domains,PatternScan_ARRESTINS	-	no_errors
ARR3	0	genome.wustl.edu	37	X	69496112	69496121	+	Frame_Shift_Del	DEL	CCTACCCCTT	CCTACCCCTT	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	CCTACCCCTT	CCTACCCCTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	X	69496112	69496121	CCTACCCCTT	-	DEL	ARR3	NM_004312.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.326_335	p.A109fs	1.000:1.000:1.000:0.998:0.975:1.000:1.000:1.000:1.000:1.000	HMMPfam_Arrestin_N,superfamily_E set domains	HMMPfam_Arrestin_N,HMMPfam_Arrestin_C,superfamily_E set domains,PatternScan_ARRESTINS	-	no_errors
ARVCF	0	genome.wustl.edu	37	22	19966462	19966462	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	22	19966462	19966462	G	T	SNP	ARVCF	NM_001670.1	human	genbank	58_37c	-1	reviewed	missense	c.1538	p.A513D	1.000	superfamily_ARM repeat	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat	-	no_errors
ASL	0	genome.wustl.edu	37	7	65546942	65546942	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	65546942	65546942	C	T	SNP	ASL	NM_000048.3	human	genbank	58_37c	+1	reviewed	silent	c.165	p.L55	0.997	HMMPfam_Lyase_1,superfamily_L-Aspartase-like	HMMPfam_Lyase_1,superfamily_L-Aspartase-like,PatternScan_FUMARATE_LYASES	-	no_errors
ASPHD1	0	genome.wustl.edu	37	16	29912802	29912803	+	In_Frame_Ins	INS	-	-	GGT	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	29912802	29912803	-	GGT	INS	ASPHD1	NM_181718.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.510_511	p.172in_frame_insG	1.000:1.000	NULL	HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197	-	no_errors
ASPM	0	genome.wustl.edu	37	1	197086988	197086988	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	197086988	197086988	C	G	SNP	ASPM	NM_018136.4	human	genbank	58_37c	-1	reviewed	missense	c.3996	p.Q1332H	0.881	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ATP6V1B1	0	genome.wustl.edu	37	2	71191567	71191567	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	71191567	71191567	G	C	SNP	ATP6V1B1	NM_001692.3	human	genbank	58_37c	+1	reviewed	splice_site	c.1144-1	e12-1	1.000	-	-	-	no_errors
BAAT	0	genome.wustl.edu	37	9	104125001	104125001	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	104125001	104125001	G	A	SNP	BAAT	NM_001127610.1	human	genbank	58_37c	-1	reviewed	silent	c.966	p.F322	0.998	HMMPfam_BAAT_C,superfamily_SSF53474	HMMPfam_Bile_Hydr_Trans,HMMPfam_BAAT_C,superfamily_SSF53474	-	no_errors
C15orf55	0	genome.wustl.edu	37	15	34648639	34648639	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	15	34648639	34648639	G	C	SNP	C15orf55	NM_175741.1	human	genbank	58_37c	+1	validated	missense	c.2346	p.E782D	0.000	NULL	NULL	-	no_errors
C17orf57	0	genome.wustl.edu	37	17	45421643	45421643	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	45421643	45421643	C	G	SNP	C17orf57	NM_152347.3	human	genbank	58_37c	+1	provisional	missense	c.419	p.S140C	0.425	NULL	superfamily_EF-hand	-	no_errors
C1orf14	0	genome.wustl.edu	37	1	182908337	182908337	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	182908337	182908337	C	G	SNP	C1orf14	NM_030933.2	human	genbank	58_37c	-1	validated	silent	c.1050	p.L350	0.997	NULL	HMMSmart_PbH1,HMMSmart_CASH,superfamily_Pectin_lyas_like	-	no_errors
C1orf161	0	genome.wustl.edu	37	1	116666885	116666885	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	116666885	116666885	G	C	SNP	C1orf161	NM_152367.2	human	genbank	58_37c	+1	validated	missense	c.388	p.D130H	0.215	NULL	NULL	-	no_errors
C5orf33	0	genome.wustl.edu	37	5	36195293	36195293	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	36195293	36195293	T	G	SNP	C5orf33	NM_001085411.1	human	genbank	58_37c	-1	validated	missense	c.1282	p.M428L	1.000	NULL	HMMPfam_NAD_kinase,superfamily_NAD kinase (Pfam 01513)	-	no_errors
CADPS	0	genome.wustl.edu	37	3	62648054	62648054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	3	62648054	62648054	C	T	SNP	CADPS	NM_003716.3	human	genbank	58_37c	-1	reviewed	missense	c.904	p.E302K	1.000	NULL	HMMPfam_C2,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_DUF1041,superfamily_PH domain-like	-	no_errors
CDH22	0	genome.wustl.edu	37	20	44869708	44869708	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	44869708	44869708	C	T	SNP	CDH22	NM_021248.1	human	genbank	58_37c	-1	reviewed	silent	c.444	p.L148	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CEP63	0	genome.wustl.edu	37	3	134264532	134264532	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	3	134264532	134264532	C	G	SNP	CEP63	NM_025180.3	human	genbank	58_37c	+1	reviewed	missense	c.660	p.I220M	1.000	NULL	NULL	-	no_errors
CHD6	0	genome.wustl.edu	37	20	40043946	40043946	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	40043946	40043946	G	C	SNP	CHD6	NM_032221.3	human	genbank	58_37c	-1	reviewed	silent	c.6819	p.V2273	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,PatternScan_DEAH_ATP_HELICASE,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CHKB	0	genome.wustl.edu	37	22	51019010	51019010	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	22	51019010	51019010	C	A	SNP	CHKB	NM_005198.4	human	genbank	58_37c	-1	reviewed	nonsense	c.661	p.E221*	0.995	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)	HMMPfam_Choline_kinase,superfamily_Protein kinase-like (PK-like)	-	no_errors
CHST8	0	genome.wustl.edu	37	19	34180251	34180251	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	34180251	34180251	C	T	SNP	CHST8	NM_001127895.1	human	genbank	58_37c	+1	validated	silent	c.84	p.F28	0.993	NULL	HMMPfam_Sulfotransfer_2	-	no_errors
CLEC18B	0	genome.wustl.edu	37	16	74446736	74446736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	74446736	74446736	C	T	SNP	CLEC18B	NM_001011880.2	human	genbank	58_37c	-1	validated	missense	c.719	p.G240E	0.996	HMMSmart_SM00181	HMMSmart_SM00198,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_SCP,superfamily_PR-1-like,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1	-	no_errors
COL21A1	0	genome.wustl.edu	37	6	56044762	56044781	+	Frame_Shift_Del	DEL	GGGTAGTCACTATATTGAAC	GGGTAGTCACTATATTGAAC	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	GGGTAGTCACTATATTGAAC	GGGTAGTCACTATATTGAAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	6	56044762	56044781	GGGTAGTCACTATATTGAAC	-	DEL	COL21A1	NM_030820.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.254_235	p.V79fs	0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.991:1.000:1.000:0.982:1.000:1.000	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_vWA-like	-	no_errors
CPSF3	0	genome.wustl.edu	37	2	9613060	9613060	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	9613060	9613060	G	C	SNP	CPSF3	NM_016207.2	human	genbank	58_37c	+1	provisional	missense	c.1969	p.E657Q	1.000	NULL	HMMPfam_Lactamase_B,HMMPfam_RMMBL,superfamily_Metallo-hydrolase/oxidoreductase	-	no_errors
CROT	0	genome.wustl.edu	37	7	87011255	87011255	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	87011255	87011255	G	A	SNP	CROT	NM_001143935.1	human	genbank	58_37c	+1	reviewed	silent	c.1092	p.V364	0.010	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
CRYGC	0	genome.wustl.edu	37	2	208994511	208994511	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	208994511	208994511	C	T	SNP	CRYGC	NM_020989.3	human	genbank	58_37c	-1	reviewed	silent	c.6	p.G2	1.000	superfamily_gamma-Crystallin-like	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like	-	no_errors
CSMD2	0	genome.wustl.edu	37	1	33999492	33999492	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	33999492	33999492	G	A	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	missense	c.9463	p.L3155F	1.000	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
DENND4C	0	genome.wustl.edu	37	9	19331976	19331976	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	19331976	19331976	G	A	SNP	DENND4C	NM_017925.4	human	genbank	58_37c	+1	provisional	missense	c.1546	p.E516K	1.000	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors
DFNB31	0	genome.wustl.edu	37	9	117168684	117168684	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	117168684	117168684	G	A	SNP	DFNB31	NM_015404.3	human	genbank	58_37c	-1	reviewed	silent	c.2187	p.P729	0.091	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
DGKI	0	genome.wustl.edu	37	7	137206651	137206651	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	137206651	137206651	C	T	SNP	DGKI	NM_004717.2	human	genbank	58_37c	-1	reviewed	missense	c.2209	p.E737K	1.000	NULL	HMMPfam_DAGK_acc,HMMSmart_DAGKa,HMMPfam_DAGK_cat,HMMSmart_DAGKc,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1	-	no_errors
DIAPH1	0	genome.wustl.edu	37	5	140953564	140953566	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	140953564	140953566	GGA	-	DEL	DIAPH1	NM_005219.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1853_1851	p.P620in_frame_del	0.010:0.008:0.007	HMMPfam_Drf_FH1	HMMSmart_SM00498,HMMPfam_Drf_FH1,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
DIS3	0	genome.wustl.edu	37	13	73345227	73345227	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	13	73345227	73345227	G	C	SNP	DIS3	NM_014953.3	human	genbank	58_37c	-1	validated	missense	c.1662	p.D554E	0.844	HMMPfam_RNB	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II,HMMSmart_SM00670,superfamily_PIN domain-like	-	no_errors
DMD	0	genome.wustl.edu	37	X	32380914	32380914	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	X	32380914	32380914	C	G	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.5316	p.K1772N	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DNAH7	0	genome.wustl.edu	37	2	196619103	196619103	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	196619103	196619103	C	T	SNP	DNAH7	NM_018897.2	human	genbank	58_37c	-1	validated	missense	c.11722	p.E3908K	1.000	HMMPfam_Dynein_heavy	PatternScan_ADH_SHORT,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,PatternScan_EF_HAND_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DOCK11	0	genome.wustl.edu	37	X	117722098	117722098	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	X	117722098	117722098	A	T	SNP	DOCK11	NM_144658.3	human	genbank	58_37c	+1	validated	splice_site	c.1796-2	e17-2	1.000	-	-	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88534180	88534180	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	88534180	88534180	A	G	SNP	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	missense	c.842	p.E281G	0.067	NULL	NULL	-	no_errors
DUS1L	0	genome.wustl.edu	37	17	80018821	80018821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	80018821	80018821	C	T	SNP	DUS1L	NM_022156.3	human	genbank	58_37c	-1	validated	missense	c.859	p.E287K	1.000	HMMPfam_Dus,superfamily_SSF51395	HMMPfam_Dus,PatternScan_UPF0034,superfamily_SSF51395	-	no_errors
ENPP2	0	genome.wustl.edu	37	8	120602841	120602841	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	8	120602841	120602841	C	G	SNP	ENPP2	NM_006209.3	human	genbank	58_37c	-1	reviewed	missense	c.1267	p.E423Q	1.000	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like	HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,HMMPfam_Endonuclease_NS,HMMSmart_SM00477,HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like,superfamily_His-Me finger endonucleases,superfamily_Somatomedin B domain	-	no_errors
EVC2	0	genome.wustl.edu	37	4	5627522	5627522	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	5627522	5627522	A	G	SNP	EVC2	NM_147127.4	human	genbank	58_37c	-1	reviewed	missense	c.2000	p.L667P	0.944	NULL	NULL	-	no_errors
F13B	0	genome.wustl.edu	37	1	197031086	197031086	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	197031086	197031086	C	A	SNP	F13B	NM_001994.2	human	genbank	58_37c	-1	reviewed	missense	c.279	p.K93N	1.000	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module	-	no_errors
FAM186A	0	genome.wustl.edu	37	12	50745677	50745677	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	50745677	50745677	T	A	SNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	silent	c.4938	p.A1646	0.000	NULL	NULL	-	no_errors
FCER1A	0	genome.wustl.edu	37	1	159275777	159275777	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	159275777	159275777	G	A	SNP	FCER1A	NM_002001.2	human	genbank	58_37c	+1	reviewed	splice_site	c.332-1	e4-1	0.992	-	-	-	no_errors
FHDC1	0	genome.wustl.edu	37	4	153875460	153875460	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	153875460	153875460	G	C	SNP	FHDC1	NM_033393.2	human	genbank	58_37c	+1	validated	missense	c.652	p.E218Q	0.993	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
FLG2	0	genome.wustl.edu	37	1	152326689	152326689	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	152326689	152326689	A	T	SNP	FLG2	NM_001014342.2	human	genbank	58_37c	-1	provisional	missense	c.3573	p.S1191R	0.000	NULL	PatternScan_S100_CABP,HMMPfam_Filaggrin,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
FMO1	0	genome.wustl.edu	37	1	171254413	171254413	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	171254413	171254413	C	G	SNP	FMO1	NM_002021.1	human	genbank	58_37c	+1	reviewed	missense	c.1329	p.I443M	0.733	HMMPfam_FMO-like	HMMPfam_FMO-like,PatternScan_LIPOCALIN,superfamily_NAD(P)-binding Rossmann-fold domains,superfamily_FAD/NAD(P)-binding domain	-	no_errors
FSCB	0	genome.wustl.edu	37	14	44973863	44973863	+	Silent	SNP	A	A	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	14	44973863	44973863	A	C	SNP	FSCB	NM_032135.3	human	genbank	58_37c	-1	validated	silent	c.2328	p.V776	0.001	NULL	NULL	-	no_errors
GPR22	0	genome.wustl.edu	37	7	107114853	107114853	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	107114853	107114853	T	C	SNP	GPR22	NM_005295.2	human	genbank	58_37c	+1	reviewed	silent	c.348	p.C116	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GRID2	0	genome.wustl.edu	37	4	94159585	94159585	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	94159585	94159585	C	T	SNP	GRID2	NM_001510.2	human	genbank	58_37c	+1	validated	missense	c.1189	p.H397Y	0.994	HMMPfam_ANF_receptor,superfamily_SSF53822	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
GRK1	0	genome.wustl.edu	37	13	114321853	114321853	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	13	114321853	114321853	G	A	SNP	GRK1	ENST00000335678	human	ensembl	58_37c	+1	known	missense	c.152	p.R51H	0.959	superfamily_Regulat_G_prot_signal_superfam	HMMPfam_RGS,HMMSmart_RGS,HMMSmart_S_TK_X,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_Regulat_G_prot_signal_superfam,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
HMCN1	0	genome.wustl.edu	37	1	186114610	186114610	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	186114610	186114610	A	T	SNP	HMCN1	NM_031935.2	human	genbank	58_37c	+1	reviewed	missense	c.14342	p.Y4781F	1.000	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat	PatternScan_ASX_HYDROXYL,PatternScan_CECROPIN,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00179,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_I-set,HMMPfam_ig,PatternScan_EGF_CA,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_EGF/Laminin	-	no_errors
IKBKAP	0	genome.wustl.edu	37	9	111674596	111674596	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	111674596	111674596	C	G	SNP	IKBKAP	NM_003640.3	human	genbank	58_37c	-1	reviewed	silent	c.1137	p.R379	1.000	HMMPfam_IKI3,superfamily_Amine_DH_B_like	HMMPfam_IKI3,superfamily_Amine_DH_B_like	-	no_errors
IPP	0	genome.wustl.edu	37	1	46206927	46206927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	46206927	46206927	G	A	SNP	IPP	NM_005897.2	human	genbank	58_37c	-1	reviewed	missense	c.370	p.H124Y	0.923	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
IRF1	0	genome.wustl.edu	37	5	131822339	131822339	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	131822339	131822339	G	A	SNP	IRF1	NM_002198.2	human	genbank	58_37c	-1	reviewed	missense	c.454	p.L152F	0.997	NULL	"HMMPfam_IRF,HMMSmart_SM00348,PatternScan_IRF,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
KIAA0195	0	genome.wustl.edu	37	17	73484883	73484883	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	73484883	73484883	C	A	SNP	KIAA0195	NM_014738.4	human	genbank	58_37c	+1	validated	missense	c.656	p.P219H	1.000	NULL	superfamily_Calcium ATPase transmembrane domain M	-	no_errors
KIAA0556	0	genome.wustl.edu	37	16	27761615	27761615	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	27761615	27761615	A	T	SNP	KIAA0556	NM_015202.2	human	genbank	58_37c	+1	validated	missense	c.3334	p.T1112S	1.000	NULL	PatternScan_AKH,superfamily_Galactose-binding domain-like	-	no_errors
KIAA1244	0	genome.wustl.edu	37	6	138582743	138582743	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	6	138582743	138582743	C	T	SNP	KIAA1244	NM_020340.4	human	genbank	58_37c	+1	validated	missense	c.1184	p.S395L	1.000	NULL	HMMSmart_Sec7,HMMPfam_DUF1981	-	no_errors
KIAA1549	0	genome.wustl.edu	37	7	138601660	138601660	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	138601660	138601660	G	A	SNP	KIAA1549	NM_020910.2	human	genbank	58_37c	-1	validated	silent	c.2562	p.A854	0.000	NULL	PatternScan_HTH_LUXR_1	-	no_errors
KIF5B	0	genome.wustl.edu	37	10	32337446	32337451	+	In_Frame_Del	DEL	ACTGGA	ACTGGA	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	ACTGGA	ACTGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	32337446	32337451	ACTGGA	-	DEL	KIF5B	NM_004521.2	human	genbank	58_37c	-1	validated	in_frame_del	c.160_155	p.FQ52in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Kinesin,HMMSmart_KISc,superfamily_SSF52540	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KIFC3	0	genome.wustl.edu	37	16	57803851	57803852	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	57803851	57803852	-	A	INS	KIFC3	NM_005550.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.956_955	p.S319fs	0.674:0.677	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
L3MBTL3	0	genome.wustl.edu	37	6	130374131	130374131	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	6	130374131	130374131	G	C	SNP	L3MBTL3	NM_032438.1	human	genbank	58_37c	+1	validated	missense	c.577	p.E193Q	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,HMMPfam_MBT,HMMSmart_SM00561,superfamily_SAM/Pointed domain,superfamily_CCHHC domain,superfamily_Tudor/PWWP/MBT	-	no_errors
LOC100129070	0	genome.wustl.edu	37	9	104124645	104124645	+	RNA	SNP	G	G	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	104124645	104124645	G	T	SNP	LOC100129070	XR_039388.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.000	-	-	-	pseudogene
LOC100133178	0	genome.wustl.edu	37	1	161424124	161424124	+	Silent	SNP	A	G	G	rs9427056	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	161424124	161424124	A	G	SNP	LOC100133178	XM_001718663.2	human	genbank	58_37c	-1	model	silent	c.468	p.L156	0.000	NULL	NULL	-	no_errors
LOC401010	0	genome.wustl.edu	37	2	132200735	132200735	+	RNA	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	132200735	132200735	C	A	SNP	LOC401010	NR_002826.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.996	-	-	-	pseudogene
LOC401010	0	genome.wustl.edu	37	2	132201183	132201183	+	RNA	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	132201183	132201183	G	C	SNP	LOC401010	NR_002826.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC401859	0	genome.wustl.edu	37	16	74255244	74255261	+	In_Frame_Del	DEL	CCATGGAGCACTTTGGGT	CCATGGAGCACTTTGGGT	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	CCATGGAGCACTTTGGGT	CCATGGAGCACTTTGGGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	74255244	74255261	CCATGGAGCACTTTGGGT	-	DEL	LOC401859	XM_002344115.1	human	genbank	58_37c	+1	model	in_frame_del	c.410_427	p.MEHFGS138in_frame_del	0.709:0.782:0.967:0.995:1.000:1.000:0.997:0.934:0.038:0.032:0.046:0.064:0.104:0.221:0.982:0.996:0.986:0.984	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_Cyclophilin-like	-	no_errors
LRIT3	0	genome.wustl.edu	37	4	110791367	110791367	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	110791367	110791367	G	C	SNP	LRIT3	NM_198506.2	human	genbank	58_37c	+1	validated	missense	c.1327	p.E443Q	0.993	NULL	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
LRRFIP1	0	genome.wustl.edu	37	2	238672126	238672126	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	238672126	238672126	T	C	SNP	LRRFIP1	NM_001137552.1	human	genbank	58_37c	+1	validated	silent	c.1770	p.D590	0.000	NULL	HMMPfam_DUF2051	-	no_errors
LRRK2	0	genome.wustl.edu	37	12	40681167	40681167	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	40681167	40681167	C	A	SNP	LRRK2	NM_198578.3	human	genbank	58_37c	+1	reviewed	missense	c.2515	p.L839I	0.959	NULL	PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540	-	no_errors
MACF1	0	genome.wustl.edu	37	1	39895636	39895636	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	39895636	39895636	G	C	SNP	MACF1	NM_033044.2	human	genbank	58_37c	+1	reviewed	missense	c.12346	p.E4116Q	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399	-	no_errors
MAN2B2	0	genome.wustl.edu	37	4	6612888	6612888	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	4	6612888	6612888	G	C	SNP	MAN2B2	NM_015274.1	human	genbank	58_37c	+1	validated	missense	c.2446	p.V816L	0.000	superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C	HMMPfam_Glyco_hydro_38,superfamily_Galactose mutarotase-like,superfamily_Glycoside hydrolase/deacetylase,HMMPfam_Glyco_hydro_38C,HMMPfam_Alpha-mann_mid,superfamily_Families 57/38 glycoside transferase middle domain	-	no_errors
MTX2	0	genome.wustl.edu	37	2	177188193	177188193	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	177188193	177188193	G	A	SNP	MTX2	NM_006554.4	human	genbank	58_37c	+1	reviewed	splice_site	c.208+1	e4+1	1.000	-	-	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100635040	100635040	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	100635040	100635040	C	T	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.1625	p.S542L	0.961	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
MYO10	0	genome.wustl.edu	37	5	16877797	16877797	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	16877797	16877797	C	G	SNP	MYO10	NM_012334.2	human	genbank	58_37c	-1	validated	missense	c.41	p.R14T	0.988	NULL	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RA,HMMPfam_MyTH4,HMMSmart_MyTH4,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_PH,HMMSmart_PH,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
NBR1	0	genome.wustl.edu	37	17	41349048	41349048	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	41349048	41349048	G	T	SNP	NBR1	NM_005899.3	human	genbank	58_37c	+1	reviewed	nonsense	c.1951	p.E651*	1.000	NULL	HMMPfam_PB1,HMMSmart_PB1,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,superfamily_SSF54277	-	no_errors
NIPBL	0	genome.wustl.edu	37	5	36976318	36976318	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	36976318	36976318	T	G	SNP	NIPBL	NM_133433.3	human	genbank	58_37c	+1	reviewed	missense	c.1309	p.L437V	1.000	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
NPHS1	0	genome.wustl.edu	37	19	36332657	36332657	+	Silent	SNP	G	G	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	36332657	36332657	G	T	SNP	NPHS1	NM_004646.3	human	genbank	58_37c	-1	reviewed	silent	c.2775	p.A925	1.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
NRXN2	0	genome.wustl.edu	37	11	64435963	64435963	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	64435963	64435963	G	T	SNP	NRXN2	NM_015080.2	human	genbank	58_37c	-1	reviewed	missense	c.1311	p.D437E	1.000	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMSmart_SM00282,HMMSmart_SM00294,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
NUDT22	0	genome.wustl.edu	37	11	63995111	63995111	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	63995111	63995111	C	T	SNP	NUDT22	NM_001128612.1	human	genbank	58_37c	+1	validated	silent	c.552	p.S184	1.000	NULL	NULL	-	no_errors
OR52B2	0	genome.wustl.edu	37	11	6191248	6191248	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	6191248	6191248	G	A	SNP	OR52B2	NM_001004052.1	human	genbank	58_37c	-1	provisional	silent	c.309	p.G103	0.998	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCDHGB5	0	genome.wustl.edu	37	5	140778326	140778326	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	140778326	140778326	T	G	SNP	PCDHGB5	NM_018925.2	human	genbank	58_37c	+1	reviewed	missense	c.632	p.V211G	0.017	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PDE4B	0	genome.wustl.edu	37	1	66384309	66384309	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	66384309	66384309	G	C	SNP	PDE4B	NM_001037341.1	human	genbank	58_37c	+1	reviewed	missense	c.72	p.L24F	1.000	NULL	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like	-	no_errors
PDSS1	0	genome.wustl.edu	37	10	27024211	27024211	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	27024211	27024211	G	A	SNP	PDSS1	NM_014317.3	human	genbank	58_37c	+1	reviewed	missense	c.874	p.A292T	1.000	HMMPfam_polyprenyl_synt,superfamily_Terpenoid synthases	HMMPfam_polyprenyl_synt,PatternScan_POLYPRENYL_SYNTHET_2,PatternScan_POLYPRENYL_SYNTHET_1,superfamily_Terpenoid synthases	-	no_errors
PGBD5	0	genome.wustl.edu	37	1	230459309	230459309	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	230459309	230459309	G	A	SNP	PGBD5	NM_024554.3	human	genbank	58_37c	-1	reviewed	silent	c.1527	p.I509	1.000	NULL	NULL	-	no_errors
PGCP	0	genome.wustl.edu	37	8	98155289	98155289	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	8	98155289	98155289	C	G	SNP	PGCP	NM_016134.2	human	genbank	58_37c	+1	provisional	missense	c.1297	p.H433D	1.000	superfamily_SSF53187	HMMPfam_Peptidase_M28,superfamily_SSF53187	-	no_errors
PKD1L1	0	genome.wustl.edu	37	7	47835714	47835714	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	47835714	47835714	C	G	SNP	PKD1L1	NM_138295.2	human	genbank	58_37c	-1	reviewed	missense	c.8228	p.R2743T	0.853	HMMPfam_PKD_channel	HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_REJ,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel	-	no_errors
POLR1A	0	genome.wustl.edu	37	2	86308729	86308729	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	86308729	86308729	G	A	SNP	POLR1A	NM_015425.3	human	genbank	58_37c	-1	validated	silent	c.918	p.P306	0.840	HMMSmart_SM00663,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	HMMPfam_RNA_pol_Rpb1_2,HMMSmart_SM00663,HMMPfam_RNA_pol_Rpb1_3,HMMPfam_RNA_pol_Rpb1_1,HMMPfam_RNA_pol_Rpb1_5,HMMPfam_RNA_pol_Rpb1_4,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase	-	no_errors
PPP1R3C	0	genome.wustl.edu	37	10	93390161	93390164	+	Frame_Shift_Del	DEL	CAGA	CAGA	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	CAGA	CAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	93390161	93390164	CAGA	-	DEL	PPP1R3C	NM_005398.4	human	genbank	58_37c	-1	provisional	frame_shift_del	c.477_474	p.C158fs	1.000:1.000:1.000:0.998	HMMPfam_CBM_21	HMMPfam_CBM_21	-	no_errors
PRKCSH	0	genome.wustl.edu	37	19	11557971	11557971	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	11557971	11557971	C	T	SNP	PRKCSH	NM_002743.2	human	genbank	58_37c	+1	reviewed	missense	c.845	p.S282F	0.213	NULL	PatternScan_ER_TARGET,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich,superfamily_Man6php_recept,HMMPfam_PRKCSH,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
PTEN	0	genome.wustl.edu	37	10	89692976	89693013	+	Splice_Site	DEL	TTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAG	TTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAG	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	TTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAG	TTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	89692976	89693013	TTCTATGGGGAAGTAAGGACCAGAGACAAAAAGGTAAG	-	DEL	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	splice_site_del	c.492+34_492+1	e6-1	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.731:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors
PTPRQ	0	genome.wustl.edu	37	12	81004320	81004320	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	81004320	81004320	A	G	SNP	PTPRQ	ENST00000266688	human	ensembl	58_37c	+1	known	missense	c.4834	p.I1612V	0.678	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
PWP2	0	genome.wustl.edu	37	21	45542081	45542081	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	21	45542081	45542081	G	C	SNP	PWP2	NM_005049.2	human	genbank	58_37c	+1	validated	missense	c.1660	p.D554H	0.997	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_Peptidase_S9A_N,HMMPfam_PWP2,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
RAD51	0	genome.wustl.edu	37	15	40998407	40998407	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	15	40998407	40998407	C	A	SNP	RAD51	NM_002875.4	human	genbank	58_37c	+1	reviewed	missense	c.258	p.F86L	1.000	HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,superfamily_Rad51 N-terminal domain-like,HMMPfam_Rad51,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RASSF7	0	genome.wustl.edu	37	11	563350	563350	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	563350	563350	G	A	SNP	RASSF7	ENST00000431809	human	ensembl	58_37c	+1	known	missense	c.1102	p.E368K	0.000	NULL	HMMPfam_RA,HMMSmart_SM00314	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
RB1	0	genome.wustl.edu	37	13	48916747	48916747	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	13	48916747	48916747	C	T	SNP	RB1	NM_000321.2	human	genbank	58_37c	+1	reviewed	nonsense	c.277	p.Q93*	1.000	NULL	HMMPfam_RB_B,HMMPfam_RB_A,HMMSmart_SM00385,superfamily_Cyclin-like,HMMPfam_Rb_C	-	no_errors
RBM12	0	genome.wustl.edu	37	20	34240740	34240741	+	In_Frame_Ins	INS	-	-	GGGCCG	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	34240740	34240741	-	GGGCCG	INS	RBM12	NM_006047.4	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.2505_2504	p.838in_frame_insGP	0.947:0.997	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
RNF157	0	genome.wustl.edu	37	17	74208563	74208563	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	74208563	74208563	C	T	SNP	RNF157	NM_052916.2	human	genbank	58_37c	-1	validated	missense	c.89	p.G30E	1.000	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RNU2-2	0	genome.wustl.edu	37	11	62609264	62609264	+	RNA	SNP	A	A	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	62609264	62609264	A	G	SNP	RNU2-2	ENST00000410396	human	ensembl	58_37c	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors
RRBP1	0	genome.wustl.edu	37	20	17640650	17640650	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	17640650	17640650	G	T	SNP	RRBP1	NM_001042576.1	human	genbank	58_37c	-1	reviewed	missense	c.503	p.A168D	0.995	HMMPfam_Rib_recp_KP_reg	HMMPfam_Rib_recp_KP_reg	-	no_errors
SCARNA10	0	genome.wustl.edu	37	12	6619500	6619500	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	6619500	6619500	C	T	SNP	SCARNA10	NR_004387.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.798	-	-	-	no_errors
SETX	0	genome.wustl.edu	37	9	135205210	135205210	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	9	135205210	135205210	A	C	SNP	SETX	NM_015046.5	human	genbank	58_37c	-1	reviewed	missense	c.1775	p.I592S	1.000	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SGCA	0	genome.wustl.edu	37	17	48247653	48247653	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	48247653	48247653	G	A	SNP	SGCA	ENST00000504073	human	ensembl	58_37c	+1	known	missense	c.214	p.G72S	0.971	HMMPfam_Sarcoglycan_2	HMMPfam_Sarcoglycan_2	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
SLC2A3	0	genome.wustl.edu	37	12	8078450	8078450	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	8078450	8078450	G	A	SNP	SLC2A3	NM_006931.2	human	genbank	58_37c	-1	validated	missense	c.956	p.T319I	1.000	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS general substrate transporter	-	no_errors
SLC43A1	0	genome.wustl.edu	37	11	57265233	57265233	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	11	57265233	57265233	C	A	SNP	SLC43A1	NM_003627.4	human	genbank	58_37c	-1	provisional	missense	c.551	p.G184V	0.497	superfamily_MFS general substrate transporter	superfamily_MFS general substrate transporter	-	no_errors
SPTBN4	0	genome.wustl.edu	37	19	41066253	41066253	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	41066253	41066253	C	A	SNP	SPTBN4	NM_020971.2	human	genbank	58_37c	+1	reviewed	missense	c.5859	p.D1953E	1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_PH domain-like	-	no_errors
STAT2	0	genome.wustl.edu	37	12	56749016	56749016	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	12	56749016	56749016	C	G	SNP	STAT2	ENST00000418572	human	ensembl	58_37c	-1	known	silent	c.591	p.L197	0.000	NULL	HMMPfam_STAT_int,superfamily_STAT,HMMPfam_STAT_alpha	-	no_errors
STK10	0	genome.wustl.edu	37	5	171517330	171517330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	5	171517330	171517330	G	A	SNP	STK10	NM_005990.3	human	genbank	58_37c	-1	reviewed	missense	c.1591	p.R531C	0.879	NULL	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
SULT6B1	0	genome.wustl.edu	37	2	37415655	37415655	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	37415655	37415655	T	A	SNP	SULT6B1	NM_001032377.1	human	genbank	58_37c	-1	provisional	missense	c.15	p.E5D	0.988	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SYT3	0	genome.wustl.edu	37	19	51135658	51135658	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	51135658	51135658	C	A	SNP	SYT3	NM_032298.2	human	genbank	58_37c	-1	validated	nonsense	c.559	p.E187*	0.955	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TGM7	0	genome.wustl.edu	37	15	43569149	43569149	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	15	43569149	43569149	G	C	SNP	TGM7	NM_052955.2	human	genbank	58_37c	-1	validated	silent	c.1884	p.V628	0.986	HMMPfam_Transglut_C,superfamily_Transglut_C	HMMPfam_Transglut_N,HMMPfam_Transglut_core,HMMSmart_TGc,HMMPfam_Transglut_C,superfamily_Transglut_C,PatternScan_TRANSGLUTAMINASES,superfamily_Ig_E-set,superfamily_SSF54001	-	no_errors
TNS3	0	genome.wustl.edu	37	7	47440386	47440386	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	47440386	47440386	G	A	SNP	TNS3	NM_022748.10	human	genbank	58_37c	-1	validated	silent	c.849	p.S283	0.999	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2	HMMPfam_SH2,HMMSmart_SM00252,HMMSmart_SM00404,HMMSmart_SM00462,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTB,HMMPfam_PTEN_C2,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II,superfamily_SH2 domain	-	no_errors
TP53	0	genome.wustl.edu	37	17	7577099	7577099	+	Missense_Mutation	SNP	C	C	G	rs121912660	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	17	7577099	7577099	C	G	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.839	p.R280T	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TTN	0	genome.wustl.edu	37	2	179584070	179584070	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	2	179584070	179584070	A	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.20315	p.V6772A	0.977	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UBXN11	0	genome.wustl.edu	37	1	26608878	26608883	+	In_Frame_Del	DEL	CCGGGA	CCGGGA	-	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	CCGGGA	CCGGGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	26608878	26608883	CCGGGA	-	DEL	UBXN11	NM_183008.2	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1475_1470	p.GP492in_frame_del	0.007:0.000:0.001:0.000:0.000:0.000	NULL	HMMPfam_UBX,HMMPfam_SEP,superfamily_NSFL1 (p97 ATPase) cofactor p47 SEP domain,superfamily_Ubiquitin-like	-	no_errors
UFSP1	0	genome.wustl.edu	37	7	100486535	100486535	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	7	100486535	100486535	C	G	SNP	UFSP1	NM_001015072.3	human	genbank	58_37c	-1	validated	missense	c.358	p.D120H	0.983	HMMPfam_Peptidase_C78	HMMPfam_Peptidase_C78	-	no_errors
USP54	0	genome.wustl.edu	37	10	75258420	75258420	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	10	75258420	75258420	G	A	SNP	USP54	NM_152586.3	human	genbank	58_37c	-1	provisional	silent	c.5022	p.I1674	0.194	NULL	HMMPfam_UCH,superfamily_Cysteine proteinases	-	no_errors
VNN2	0	genome.wustl.edu	37	6	133078597	133078597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	6	133078597	133078597	G	A	SNP	VNN2	NM_004665.2	human	genbank	58_37c	-1	reviewed	missense	c.302	p.P101L	1.000	superfamily_Ntlse/CNhydtse	HMMPfam_CN_hydrolase,superfamily_Ntlse/CNhydtse	-	no_errors
XCL1	0	genome.wustl.edu	37	1	168549314	168549314	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	1	168549314	168549314	A	C	SNP	XCL1	NM_002995.1	human	genbank	58_37c	+1	provisional	missense	c.75	p.E25D	0.995	HMMPfam_IL8,superfamily_Chemokine_IL8	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8	-	no_errors
ZBTB7C	0	genome.wustl.edu	37	18	45566931	45566931	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	18	45566931	45566931	A	G	SNP	ZBTB7C	NM_001039360.1	human	genbank	58_37c	-1	validated	missense	c.548	p.I183T	1.000	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF48	0	genome.wustl.edu	37	16	30408955	30408955	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	30408955	30408955	G	A	SNP	ZNF48	ENST00000495929	human	ensembl	58_37c	+1	known	missense	c.772	p.E258K	0.999	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF541	0	genome.wustl.edu	37	19	48052598	48052598	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	48052598	48052598	C	T	SNP	ZNF541	NM_001101419.1	human	genbank	58_37c	-1	validated	missense	c.452	p.S151N	0.997	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF629	0	genome.wustl.edu	37	16	30794530	30794530	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	16	30794530	30794530	C	T	SNP	ZNF629	NM_001080417.1	human	genbank	58_37c	-1	provisional	silent	c.1119	p.P373	0.971	superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF682	0	genome.wustl.edu	37	19	20135146	20135146	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	20135146	20135146	G	C	SNP	ZNF682	NM_033196.2	human	genbank	58_37c	-1	validated	missense	c.43	p.L15V	0.360	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF831	0	genome.wustl.edu	37	20	57768189	57768189	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	20	57768189	57768189	T	G	SNP	ZNF831	NM_178457.1	human	genbank	58_37c	+1	provisional	silent	c.2115	p.T705	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF91	0	genome.wustl.edu	37	19	23542876	23542876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	19	23542876	23542876	C	T	SNP	ZNF91	NM_003430.2	human	genbank	58_37c	-1	validated	missense	c.2905	p.E969K	0.067	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZSCAN29	0	genome.wustl.edu	37	15	43661287	43661287	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1FN-01A-11D-A13L-09	TCGA-BH-A1FN-11A-34D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	bf92d76e-31ff-4273-82ea-982c4c26394b	a5d31e3a-08d6-40c1-a1e5-ee2b2eb6c544	15	43661287	43661287	C	A	SNP	ZSCAN29	NM_152455.3	human	genbank	58_37c	-1	validated	missense	c.357	p.E119D	1.000	HMMSmart_SM00431	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_MADF_DNA_bdg,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
