Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
ESPNP	284729	broad.mit.edu	37	1	17023126	17023126	+	Missense_Mutation	SNP	C	G	G	rs2610633	by1000genomes	TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:17023126C>G	uc001azn.1	-	10	1738	c.1624G>C	c.(1624-1626)GCT>CCT	p.A542P		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						AACCCCGCAGCTGGCGGTGTG	0.692000													5	17					0	0	0	0
CATSPER4	378807	broad.mit.edu	37	1	26527434	26527434	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:26527434G>A	uc010oez.1	+	8	1101	c.1101G>A	c.(1099-1101)TCG>TCA	p.S367S	CATSPER4_uc010oey.1_Silent_p.S189S|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	367	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		GCCCCCTGTCGAACCTCTCAG	0.542000													7	53					0	0	0	0
DEPDC1	55635	broad.mit.edu	37	1	68947189	68947189	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:68947189C>T	uc001dem.3	-	9	1986	c.1869G>A	c.(1867-1869)ATG>ATA	p.M623I	DEPDC1_uc001dej.3_5'UTR|DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Missense_Mutation_p.M339I	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	623	Interaction with ZNF224.				intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		TTCGGGAAATCATACGCATTA	0.393000													3	26					0	0	0	0
ZZZ3	26009	broad.mit.edu	37	1	78099026	78099026	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:78099026C>T	uc001dhq.2	-	5	490	c.14G>A	c.(13-15)CGA>CAA	p.R5Q	ZZZ3_uc001dhr.2_Intron|ZZZ3_uc009wbz.1_Missense_Mutation_p.R5Q|ZZZ3_uc001dhp.2_Missense_Mutation_p.R5Q	NM_015534	NP_056349	Q8IYH5	ZZZ3_HUMAN	zinc finger, ZZ-type containing 3	5					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|large_intestine(1)	5						ACGAGTAGATCGGGAAGCAGC	0.403000													9	42					0	0	0	0
TMED5	50999	broad.mit.edu	37	1	93621908	93621908	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:93621908C>A	uc001dpn.2	-	3	867	c.420G>T	c.(418-420)AAG>AAT	p.K140N	TMED5_uc001dpo.2_Missense_Mutation_p.K140N|TMED5_uc001dpp.2_RNA	NM_016040	NP_057124	Q9Y3A6	TMED5_HUMAN	transmembrane emp24 protein transport domain	140	Lumenal (Potential).				transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment|integral to membrane				ovary(1)	1		all_lung(203;0.0223)|Lung NSC(277;0.071)|Melanoma(281;0.147)|Glioma(108;0.188)		all cancers(265;0.00108)|GBM - Glioblastoma multiforme(16;0.00407)|Epithelial(280;0.0797)		TAATATATTTCTTCCAATCTT	0.328000													12	77					2.27111e-07	2.3861e-07	1	0
GSTM4	2948	broad.mit.edu	37	1	110199342	110199342	+	Silent	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:110199342C>T	uc001dyf.2	+	2	359	c.45C>T	c.(43-45)CAC>CAT	p.H15H	GSTM4_uc009wfi.2_Silent_p.H15H|GSTM4_uc001dyg.2_Translation_Start_Site|GSTM4_uc009wfj.2_Silent_p.H15H|GSTM4_uc001dyh.2_Silent_p.H15H|GSTM2_uc001dyi.2_Intron	NM_000850	NP_000841	Q03013	GSTM4_HUMAN	glutathione S-transferase mu 4 isoform 1	15	GST N-terminal.				xenobiotic metabolic process	endoplasmic reticulum membrane	glutathione transferase activity				0		all_epithelial(167;2.5e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)|Breast(1374;0.244)		all cancers(265;0.0123)|Colorectal(144;0.0129)|Epithelial(280;0.0147)|Lung(183;0.0422)|COAD - Colon adenocarcinoma(174;0.0471)|LUSC - Lung squamous cell carcinoma(189;0.227)	Glutathione(DB00143)	AGCTGGCCCACGCCATCCGCC	0.582000													23	127					0	0	0	0
CD160	11126	broad.mit.edu	37	1	145704173	145704173	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:145704173C>T	uc001eol.1	-	4	462	c.244G>A	c.(244-246)GAT>AAT	p.D82N	NBPF10_uc001emp.3_Intron|CD160_uc001eom.1_Intron|CD160_uc010oyz.1_Intron	NM_007053	NP_008984	O95971	BY55_HUMAN	CD160 antigen precursor	82	Ig-like V-type.				cell proliferation|cell surface receptor linked signaling pathway|cellular defense response|regulation of immune response	anchored to plasma membrane	MHC class I receptor activity|receptor binding				0	all_hematologic(18;0.00473)|Acute lymphoblastic leukemia(18;0.0786)		KIRC - Kidney renal clear cell carcinoma(6;0.0764)|Kidney(552;0.118)|Colorectal(543;0.229)			ATCCCAGGATCCCTTTTAAGT	0.463000													15	90					0	0	0	0
CD160	11126	broad.mit.edu	37	1	145704204	145704204	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:145704204C>G	uc001eol.1	-	4	431	c.213G>C	c.(211-213)GAG>GAC	p.E71D	NBPF10_uc001emp.3_Intron|CD160_uc001eom.1_Intron|CD160_uc010oyz.1_Intron	NM_007053	NP_008984	O95971	BY55_HUMAN	CD160 antigen precursor	71	Ig-like V-type.				cell proliferation|cell surface receptor linked signaling pathway|cellular defense response|regulation of immune response	anchored to plasma membrane	MHC class I receptor activity|receptor binding				0	all_hematologic(18;0.00473)|Acute lymphoblastic leukemia(18;0.0786)		KIRC - Kidney renal clear cell carcinoma(6;0.0764)|Kidney(552;0.118)|Colorectal(543;0.229)			TTAAACTGGTCTCAGGAGAAC	0.438000													10	78					0	0	0	0
MRPL9	65005	broad.mit.edu	37	1	151732587	151732587	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:151732587T>C	uc001eyv.2	-	7	828	c.743A>G	c.(742-744)TAT>TGT	p.Y248C	MRPL9_uc009wmz.2_RNA	NM_031420	NP_113608	Q9BYD2	RM09_HUMAN	mitochondrial ribosomal protein L9 precursor	248					translation	mitochondrial ribosome	structural constituent of ribosome			ovary(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CCAGTACTTATATCTTTTGGT	0.498000													6	50					0	0	0	0
TDRD10	126668	broad.mit.edu	37	1	154492809	154492809	+	Silent	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:154492809C>T	uc009wow.2	+	5	1009	c.171C>T	c.(169-171)TTC>TTT	p.F57F	TDRD10_uc001ffd.2_Silent_p.F57F|TDRD10_uc001ffe.2_5'Flank	NM_001098475	NP_001091945	Q5VZ19	TDR10_HUMAN	tudor domain containing 10 isoform a	57	RRM.						nucleotide binding|RNA binding			ovary(1)	1	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			TAAAGGACTTCAACCCTCTTG	0.423000													6	54					0	0	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161167904	161167904	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:161167904A>G	uc001fyt.3	-	1	942	c.514T>C	c.(514-516)TCT>CCT	p.S172P	ADAMTS4_uc001fyu.2_Missense_Mutation_p.S172P|NDUFS2_uc001fyv.2_5'Flank	NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	172					proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			CCCCCAGCAGAGTTAGGGGTG	0.637000													8	56					0	0	0	0
PAPPA2	60676	broad.mit.edu	37	1	176738784	176738784	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:176738784G>C	uc001gkz.2	+	16	5529	c.4365G>C	c.(4363-4365)CAG>CAC	p.Q1455H	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1455	Sushi 1.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ACTGGGACCAGAATGTGAGCT	0.468000													16	57					0	0	0	0
DDX59	83479	broad.mit.edu	37	1	200635068	200635068	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:200635068G>A	uc009wzk.2	-	2	1044	c.801C>T	c.(799-801)TTC>TTT	p.F267F	DDX59_uc010ppl.1_Silent_p.F267F	NM_001031725	NP_001026895	Q5T1V6	DDX59_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 59	267	Helicase ATP-binding.					intracellular	ATP binding|ATP-dependent helicase activity|metal ion binding|RNA binding			ovary(2)|breast(1)|central_nervous_system(1)	4						CACTTACCTCGAATAAAGCTC	0.368000													6	46					0	0	0	0
C1orf186	440712	broad.mit.edu	37	1	206243180	206243180	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:206243180C>T	uc001hdt.1	-	3	721	c.82G>A	c.(82-84)GCC>ACC	p.A28T		NM_001007544	NP_001007545	Q6ZWK4	CA186_HUMAN	hypothetical protein LOC440712	28	Helical; (Potential).					integral to membrane					0			BRCA - Breast invasive adenocarcinoma(75;0.0754)			TAGTTGATGGCGGTGAGGAAG	0.517000													13	53					0	0	0	0
PLXNA2	5362	broad.mit.edu	37	1	208205080	208205080	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:208205080C>T	uc001hgz.2	-	29	5838	c.5080G>A	c.(5080-5082)GAC>AAC	p.D1694N	PLXNA2_uc001hgy.2_5'Flank	NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	1694	Cytoplasmic (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		TCAAACAAGTCGTCCACAAAC	0.577000													11	49					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	215901489	215901489	+	Silent	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:215901489C>T	uc001hku.1	-	61	12336	c.11949G>A	c.(11947-11949)TTG>TTA	p.L3983L		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3983	Fibronectin type-III 25.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TTGTCCAATTCAACAGAACTG	0.498000										HNSCC(13;0.011)			14	91					0	0	0	0
ARID4B	51742	broad.mit.edu	37	1	235345577	235345577	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:235345577C>G	uc001hwq.2	-	20	3155	c.2657G>C	c.(2656-2658)AGA>ACA	p.R886T	ARID4B_uc001hwr.2_Missense_Mutation_p.R800T|ARID4B_uc001hws.3_Missense_Mutation_p.R800T|ARID4B_uc001hwp.2_RNA|ARID4B_uc001hwt.3_Missense_Mutation_p.R567T	NM_016374	NP_057458	Q4LE39	ARI4B_HUMAN	AT rich interactive domain 4B isoform 1	886					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding			ovary(2)|lung(1)	3	Ovarian(103;0.0473)|Breast(184;0.23)	all_cancers(173;0.000782)|Prostate(94;0.0132)|all_epithelial(177;0.0808)|Lung SC(1967;0.24)	OV - Ovarian serous cystadenocarcinoma(106;2.86e-05)			TAGAGATTTTCTTTTTTCCTC	0.348000													20	92					0	0	0	0
HEATR1	55127	broad.mit.edu	37	1	236722359	236722359	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr1:236722359C>T	uc001hyd.1	-	35	4972	c.4847G>A	c.(4846-4848)CGC>CAC	p.R1616H	HEATR1_uc009xgh.1_Missense_Mutation_p.R778H	NM_018072	NP_060542	Q9H583	HEAT1_HUMAN	protein BAP28	1616					rRNA processing	nucleolus|ribonucleoprotein complex	protein binding			ovary(2)|skin(1)	3	Ovarian(103;0.0634)|Breast(184;0.133)	all_cancers(173;0.0255)|Prostate(94;0.175)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			CGCTTTGCGGCGAACAGATGG	0.458000													14	55					0	0	0	0
C10orf18	54906	broad.mit.edu	37	10	5804550	5804550	+	Silent	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr10:5804550T>C	uc001iij.2	+	20	7855	c.7230T>C	c.(7228-7230)GAT>GAC	p.D2410D	C10orf18_uc001iik.2_Silent_p.D1254D	NM_017782	NP_060252	Q5VWN6	CJ018_HUMAN	hypothetical protein LOC54906	2410										ovary(1)|central_nervous_system(1)	2						TTGTTACAGATGTAAATAACT	0.303000													8	71					0	0	0	0
LOC642826	642826	broad.mit.edu	37	10	47207813	47207813	+	RNA	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr10:47207813T>C	uc001jei.2	-	12		c.1586A>G			uc009xnf.2_Missense_Mutation_p.H132R					Homo sapiens cDNA, FLJ99065.												0						TTTACTTACATGGTTTGTACA	0.294000													3	14					0	0	0	0
PCDH15	65217	broad.mit.edu	37	10	55700733	55700733	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr10:55700733G>C	uc001jju.1	-	24	3520	c.3125C>G	c.(3124-3126)CCT>CGT	p.P1042R	PCDH15_uc010qhq.1_Missense_Mutation_p.P1047R|PCDH15_uc010qhr.1_Missense_Mutation_p.P1042R|PCDH15_uc010qhs.1_Missense_Mutation_p.P1054R|PCDH15_uc010qht.1_Missense_Mutation_p.P1049R|PCDH15_uc010qhu.1_Missense_Mutation_p.P1042R|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.P1042R|PCDH15_uc010qhw.1_Missense_Mutation_p.P1005R|PCDH15_uc010qhx.1_Missense_Mutation_p.P971R|PCDH15_uc010qhy.1_Missense_Mutation_p.P1047R|PCDH15_uc010qhz.1_Missense_Mutation_p.P1042R|PCDH15_uc010qia.1_Missense_Mutation_p.P1020R|PCDH15_uc010qib.1_Missense_Mutation_p.P1020R	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1042	Cadherin 10.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TACTGGAGGAGGTCTGCAGGT	0.269000										HNSCC(58;0.16)			5	21					0	0	0	0
TACR2	6865	broad.mit.edu	37	10	71166838	71166838	+	Splice_Site	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr10:71166838A>G	uc001jpn.2	-	4	1533	c.938_splice	c.e4+1	p.R313_splice	TACR2_uc001jpm.2_Splice_Site_p.R101_splice	NM_001057	NP_001048	P21452	NK2R_HUMAN	tachykinin receptor 2						excretion|muscle contraction	integral to plasma membrane	tachykinin receptor activity			prostate(1)	1					Clonidine(DB00575)|Octreotide(DB00104)	GTGGGGGCTCACCTGTGGTTG	0.602000													8	56					0	0	0	0
RGR	5995	broad.mit.edu	37	10	86014100	86014100	+	Silent	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr10:86014100C>G	uc001kdc.1	+	5	569	c.531C>G	c.(529-531)CTC>CTG	p.L177L	RGR_uc001kdd.1_Silent_p.L181L|RGR_uc001kde.1_Silent_p.L177L	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	177	Helical; Name=5; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						CCAGCTTCCTCTTCACCATGT	0.562000													7	68					0	0	0	0
PDZD8	118987	broad.mit.edu	37	10	119049706	119049706	+	Missense_Mutation	SNP	C	T	T	rs150304837		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr10:119049706C>T	uc001lde.1	-	4	1451	c.1252G>A	c.(1252-1254)GCC>ACC	p.A418T		NM_173791	NP_776152	Q8NEN9	PDZD8_HUMAN	PDZ domain containing 8	418	PDZ.				intracellular signal transduction		metal ion binding				0		Colorectal(252;0.19)		all cancers(201;0.0121)		CCTCCAATGGCGATAAGTCGA	0.423000													13	47					0	0	0	0
GRK5	2869	broad.mit.edu	37	10	121156241	121156241	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr10:121156241G>A	uc001led.2	+	4	529	c.296G>A	c.(295-297)GGA>GAA	p.G99E	GRK5_uc009xzh.2_5'UTR|GRK5_uc010qta.1_5'UTR	NM_005308	NP_005299	P34947	GRK5_HUMAN	G protein-coupled receptor kinase 5	99	N-terminal.|RGS.				G-protein signaling, coupled to cAMP nucleotide second messenger|regulation of G-protein coupled receptor protein signaling pathway|tachykinin receptor signaling pathway	cytoplasm|plasma membrane|soluble fraction	ATP binding|G-protein coupled receptor kinase activity|phospholipid binding|protein kinase C binding|signal transducer activity			lung(2)|stomach(1)	3		Lung NSC(174;0.0971)|all_lung(145;0.127)|Ovarian(717;0.249)		all cancers(201;0.0227)		GAAAAACTGGGAGAGAAAGGG	0.393000													13	75					0	0	0	0
RIC8A	60626	broad.mit.edu	37	11	209868	209868	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:209868G>A	uc001log.2	+	3	919	c.594G>A	c.(592-594)CTG>CTA	p.L198L	BET1L_uc001loe.2_5'Flank|BET1L_uc001lod.2_5'Flank|RIC8A_uc001lof.2_Silent_p.L198L|RIC8A_uc001loh.2_Silent_p.L191L	NM_021932	NP_068751	Q9NPQ8	RIC8A_HUMAN	resistance to inhibitors of cholinesterase 8	198						cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity				0		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;4.45e-27)|Epithelial(43;2.94e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.86e-21)|BRCA - Breast invasive adenocarcinoma(625;3.57e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		CACTGGAGCTGACGCTGGGGG	0.597000													12	47					0	0	0	0
PDDC1	347862	broad.mit.edu	37	11	773582	773582	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:773582T>C	uc001lrc.2	-	4	320	c.295A>G	c.(295-297)ACC>GCC	p.T99A	PDDC1_uc010qwm.1_Missense_Mutation_p.T49A|PDDC1_uc001lrd.2_Missense_Mutation_p.T99A|PDDC1_uc001lrf.1_Intron|PDDC1_uc001lrg.1_Intron|PDDC1_uc009ycg.2_Missense_Mutation_p.T49A|PDDC1_uc010qwn.1_RNA|PDDC1_uc010qwo.1_RNA|PDDC1_uc010qwp.1_Intron|PDDC1_uc010qwq.1_Intron|PDDC1_uc010qwr.1_Missense_Mutation_p.T99A|PDDC1_uc010qws.1_Missense_Mutation_p.T49A	NM_182612	NP_872418	Q8NB37	PDDC1_HUMAN	Parkinson disease 7 domain containing 1	99						extracellular region					0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;3.66e-26)|Epithelial(43;2.43e-25)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-19)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCAGGTCGGTCAGGGCCCCA	0.637000													3	21					0	0	0	0
MUC15	143662	broad.mit.edu	37	11	26587071	26587071	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:26587071A>G	uc001mqx.2	-	2	601	c.335T>C	c.(334-336)TTG>TCG	p.L112S	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Missense_Mutation_p.L139S|MUC15_uc001mqy.2_Missense_Mutation_p.L139S	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	112	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						GCTATGGATCAAGGGAGGGCT	0.453000													6	93					0	0	0	0
C11orf41	25758	broad.mit.edu	37	11	33620472	33620472	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:33620472G>C	uc001mup.3	+	12	4109	c.3985G>C	c.(3985-3987)GAG>CAG	p.E1329Q	C11orf41_uc001mun.1_3'UTR	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	1323						integral to membrane				ovary(2)	2						AGTGACAAAGGAGGAGGCAAG	0.577000													5	22					0	0	0	0
ARHGAP1	392	broad.mit.edu	37	11	46702656	46702656	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:46702656G>T	uc001ndd.2	-	7	609	c.540C>A	c.(538-540)TTC>TTA	p.F180L		NM_004308	NP_004299	Q07960	RHG01_HUMAN	Rho GTPase activating protein 1	180	CRAL-TRIO.				Rho protein signal transduction	cytosol|intracellular membrane-bounded organelle	SH3 domain binding|SH3/SH2 adaptor activity			skin(1)	1		Lung NSC(402;1.76e-12)|all_lung(304;1.3e-11)		GBM - Glioblastoma multiforme(35;5.17e-06)|BRCA - Breast invasive adenocarcinoma(625;0.00112)|Lung(87;0.153)		GCCCGAACTTGAAGCTGTTGG	0.602000													4	42					0.00909568	0.0092066	1	0
CKAP5	9793	broad.mit.edu	37	11	46771969	46771969	+	Silent	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:46771969T>C	uc001ndi.1	-	42	5669	c.5559A>G	c.(5557-5559)TTA>TTG	p.L1853L	CKAP5_uc009ylg.1_Silent_p.L1746L|CKAP5_uc001ndj.1_Silent_p.L1793L|CKAP5_uc001ndh.1_Silent_p.L782L	NM_001008938	NP_001008938	Q14008	CKAP5_HUMAN	colonic and hepatic tumor over-expressed protein	1853					cell division|centrosome organization|establishment or maintenance of microtubule cytoskeleton polarity|G2/M transition of mitotic cell cycle|mitotic prometaphase|RNA transport|spindle organization	centrosome|cytosol	protein binding|protein binding			ovary(1)|skin(1)	2						TATATTCATATAACTCTGCTA	0.428000													15	51					0	0	0	0
MADD	8567	broad.mit.edu	37	11	47305742	47305742	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:47305742A>G	uc001ner.1	+	11	2067	c.1876A>G	c.(1876-1878)ATG>GTG	p.M626V	MADD_uc001neq.2_Missense_Mutation_p.M626V|MADD_uc001nev.1_Missense_Mutation_p.M626V|MADD_uc001nes.1_Missense_Mutation_p.M626V|MADD_uc001net.1_Missense_Mutation_p.M626V|MADD_uc009yln.1_Missense_Mutation_p.M626V|MADD_uc001neu.1_Missense_Mutation_p.M626V|MADD_uc001nex.2_Missense_Mutation_p.M626V|MADD_uc001nez.2_Missense_Mutation_p.M626V|MADD_uc001new.2_Missense_Mutation_p.M626V	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	626					activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		CAGTGATAGTATGGATTATGA	0.423000													16	93					0	0	0	0
RCOR2	283248	broad.mit.edu	37	11	63681511	63681511	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:63681511C>T	uc001nyc.2	-	8	1194	c.806G>A	c.(805-807)GGC>GAC	p.G269D		NM_173587	NP_775858	Q8IZ40	RCOR2_HUMAN	REST corepressor 2	269					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)|skin(1)	2						TGCCGTGAGGCCTTCAGGGCT	0.642000													17	129					0	0	0	0
UVRAG	7405	broad.mit.edu	37	11	75826972	75826972	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:75826972G>A	uc001oxc.2	+	14	1551	c.1310G>A	c.(1309-1311)AGA>AAA	p.R437K	UVRAG_uc010rrw.1_Missense_Mutation_p.R336K|UVRAG_uc001oxd.2_Missense_Mutation_p.R65K|UVRAG_uc010rrx.1_Missense_Mutation_p.R65K|UVRAG_uc010rry.1_5'UTR	NM_003369	NP_003360	Q9P2Y5	UVRAG_HUMAN	UV radiation resistance associated	437					DNA repair|positive regulation of autophagy	early endosome|late endosome|lysosome	protein binding			skin(4)|lung(2)	6						TCACAGCTAAGATATCAACAT	0.373000													5	25					0	0	0	0
NOX4	50507	broad.mit.edu	37	11	89223667	89223667	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:89223667T>C	uc001pct.2	-	2	351	c.112A>G	c.(112-114)AAC>GAC	p.N38D	NOX4_uc009yvr.2_Intron|NOX4_uc001pcu.2_Translation_Start_Site|NOX4_uc001pcw.2_Missense_Mutation_p.N38D|NOX4_uc001pcx.2_Missense_Mutation_p.N38D|NOX4_uc001pcv.2_Missense_Mutation_p.N38D|NOX4_uc009yvo.2_RNA|NOX4_uc010rtu.1_Translation_Start_Site|NOX4_uc009yvp.2_Missense_Mutation_p.N38D|NOX4_uc010rtv.1_Missense_Mutation_p.N14D|NOX4_uc009yvq.2_Missense_Mutation_p.N14D|NOX4_uc009yvs.1_RNA|NOX4_uc001pcy.2_RNA	NM_016931	NP_058627	Q9NPH5	NOX4_HUMAN	NADPH oxidase 4 isoform a	38	Extracellular (Potential).				cell aging|cell morphogenesis|inflammatory response|negative regulation of cell proliferation|superoxide anion generation	endoplasmic reticulum membrane|focal adhesion|integral to membrane|nucleus	electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|nucleotide binding|oxygen sensor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.011)				GGCCCTTGGTTATACAGCAAG	0.418000													15	63					0	0	0	0
RNF214	257160	broad.mit.edu	37	11	117109781	117109781	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:117109781A>T	uc001pqt.2	+	3	617	c.572A>T	c.(571-573)GAT>GTT	p.D191V	RNF214_uc001pqu.2_Missense_Mutation_p.D191V|RNF214_uc010rxf.1_Intron	NM_207343	NP_997226	Q8ND24	RN214_HUMAN	ring finger protein 214	191							zinc ion binding				0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.88e-05)|Epithelial(105;0.000397)|all cancers(92;0.00258)		CAGGATGATGATCAAGATAGC	0.468000													13	75					0	0	0	0
VWF	7450	broad.mit.edu	37	12	6078430	6078430	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:6078430G>A	uc001qnn.1	-	45	7926	c.7676C>T	c.(7675-7677)TCG>TTG	p.S2559L	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	2559					blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CTGAAAGCCCGAGGGGCAGAC	0.592000													4	49					0	0	0	0
CLEC4E	26253	broad.mit.edu	37	12	8687355	8687355	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:8687355G>A	uc001quo.1	-	6	704	c.539C>T	c.(538-540)GCC>GTC	p.A180V		NM_014358	NP_055173	Q9ULY5	CLC4E_HUMAN	C-type lectin domain family 4, member E	180	C-type lectin.|Extracellular (Potential).					integral to membrane	sugar binding			central_nervous_system(1)	1	Lung SC(5;0.184)					TCTCATGGTGGCACAGTCCTC	0.413000													18	55					0	0	0	0
KLHDC5	57542	broad.mit.edu	37	12	27950650	27950650	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:27950650C>T	uc001rij.2	+	3	1146	c.1069C>T	c.(1069-1071)CGG>TGG	p.R357W	KLHDC5_uc009zjj.2_RNA	NM_020782	NP_065833	Q9P2K6	KLDC5_HUMAN	kelch domain containing 5	357	Kelch 4.									ovary(1)|central_nervous_system(1)	2	Lung SC(9;0.0873)					TCTTTCAGACCGGAACATGAA	0.473000													45	328					0	0	0	0
KRT81	3887	broad.mit.edu	37	12	52681054	52681054	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:52681054G>T	uc001sab.2	-	7	1129	c.1079C>A	c.(1078-1080)GCC>GAC	p.A360D	KRT86_uc010snq.1_Intron|KRT86_uc009zmg.2_Intron|KRT81_uc001sac.2_5'UTR	NM_002281	NP_002272	Q14533	KRT81_HUMAN	keratin, hair, basic, 1	360	Rod.|Coil 2.					keratin filament	protein binding|structural molecule activity				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		ATCACTGAGGGCCGCCTCACC	0.617000													8	45					7.48243e-07	7.81184e-07	1	0
SOAT2	8435	broad.mit.edu	37	12	53516967	53516967	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:53516967C>T	uc001sbv.2	+	13	1427	c.1339C>T	c.(1339-1341)CCC>TCC	p.P447S	SOAT2_uc009zms.2_RNA	NM_003578	NP_003569	O75908	SOAT2_HUMAN	acyl-CoA:cholesterol acyltransferase 2	447	Helical; (Potential).				cholesterol efflux|cholesterol esterification|cholesterol homeostasis|cholesterol metabolic process|macrophage derived foam cell differentiation|very-low-density lipoprotein particle assembly	brush border|endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol binding|cholesterol O-acyltransferase activity|fatty-acyl-CoA binding			ovary(1)	1						GTTCTTCTATCCCGTCATGCT	0.592000													11	52					0	0	0	0
USP15	9958	broad.mit.edu	37	12	62785134	62785134	+	Missense_Mutation	SNP	G	C	C	rs7358652		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:62785134G>C	uc001src.1	+	16	2167	c.2158G>C	c.(2158-2160)GGC>CGC	p.G720R	USP15_uc001srb.1_Missense_Mutation_p.G691R	NM_006313	NP_006304	Q9Y4E8	UBP15_HUMAN	ubiquitin specific peptidase 15	720					protein deubiquitination|ubiquitin-dependent protein catabolic process		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|lung(1)	3			GBM - Glioblastoma multiforme(1;0.000276)	GBM - Glioblastoma multiforme(28;0.0622)		CAACAACTTAGGCAATACTGA	0.358000													12	83					0	0	0	0
POLR3B	55703	broad.mit.edu	37	12	106820987	106820987	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:106820987C>T	uc001tlp.2	+	13	1336	c.1114C>T	c.(1114-1116)CTT>TTT	p.L372F	POLR3B_uc001tlq.2_Missense_Mutation_p.L314F	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	372					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						TTTATCTCTTCTTTTTGAAGA	0.274000													6	10					0	0	0	0
C12orf51	283450	broad.mit.edu	37	12	112610649	112610649	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:112610649C>T	uc009zwc.2	-	60	10363	c.10345G>A	c.(10345-10347)GTC>ATC	p.V3449I		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						GCATGTCGGACATCGATGCAT	0.587000													7	61					0	0	0	0
C12orf51	283450	broad.mit.edu	37	12	112666473	112666473	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:112666473C>T	uc009zwc.2	-	35	5414	c.5396G>A	c.(5395-5397)AGA>AAA	p.R1799K	C12orf51_uc001ttr.1_5'Flank	NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						AACACAAAGTCTAGACAATGG	0.398000													6	58					0	0	0	0
DCLK1	9201	broad.mit.edu	37	13	36700050	36700050	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr13:36700050G>A	uc001uvf.2	-	2	458	c.225C>T	c.(223-225)GCC>GCT	p.A75A		NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	75	Doublecortin 1.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		CTGGGGAGATGGCATACACAA	0.527000													12	56					0	0	0	0
F7	2155	broad.mit.edu	37	13	113773175	113773175	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr13:113773175G>A	uc001vsv.2	+	9	1305	c.1254G>A	c.(1252-1254)CTG>CTA	p.L418L	F7_uc001vsw.2_Silent_p.L396L|F7_uc010tjt.1_Silent_p.L349L	NM_000131	NP_000122	P08709	FA7_HUMAN	coagulation factor VII isoform a precursor	418	Peptidase S1.				anti-apoptosis|blood coagulation, extrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of leukocyte chemotaxis|positive regulation of platelet-derived growth factor receptor signaling pathway|positive regulation of positive chemotaxis|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|Golgi lumen|plasma membrane	calcium ion binding|glycoprotein binding|serine-type endopeptidase activity				0	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.118)|all_lung(25;0.0364)|all_epithelial(44;0.0393)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0737)|Epithelial(84;0.213)|BRCA - Breast invasive adenocarcinoma(86;0.218)		Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Menadione(DB00170)	CGTGGTACCTGACGGGCATCG	0.627000													8	18					0	0	0	0
PRMT5	10419	broad.mit.edu	37	14	23397351	23397351	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr14:23397351C>T	uc001whm.1	-	3	390	c.299G>A	c.(298-300)CGC>CAC	p.R100H	PRMT5_uc001whl.1_Missense_Mutation_p.R83H|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_5'UTR|PRMT5_uc010tng.1_Intron|PRMT5_uc010tnh.1_Intron|PRMT5_uc001whn.1_Missense_Mutation_p.R83H	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	100					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		GGAGTTCCTGCGAATCTTCTC	0.498000													5	40					0	0	0	0
NIN	51199	broad.mit.edu	37	14	51192739	51192739	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr14:51192739C>T	uc001wym.2	-	30	6315	c.6124G>A	c.(6124-6126)GAA>AAA	p.E2042K	NIN_uc001wyi.2_Missense_Mutation_p.E2042K|NIN_uc001wyj.2_RNA|NIN_uc001wyk.2_Missense_Mutation_p.E1329K|NIN_uc010tqp.1_Missense_Mutation_p.E2048K	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	2042	Potential.				centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					TGTTCAACTTCTATCATTCGT	0.413000			T	PDGFRB	MPD								11	66					0	0	0	0
NID2	22795	broad.mit.edu	37	14	52520909	52520909	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr14:52520909A>G	uc001wzo.2	-	4	1132	c.898T>C	c.(898-900)TTC>CTC	p.F300L	NID2_uc010tqs.1_Missense_Mutation_p.F300L|NID2_uc010tqt.1_Missense_Mutation_p.F300L|NID2_uc001wzp.2_Missense_Mutation_p.F300L	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	300						basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					GCATGGCTGAAGGAACGTCCC	0.517000													6	17					0	0	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102452228	102452228	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr14:102452228A>T	uc001yks.2	+	8	1830	c.1666A>T	c.(1666-1668)AGG>TGG	p.R556W		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	556	Interaction with DYNC1I2 (By similarity).|Stem (By similarity).|Potential.				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GTACGATGAGAGGATCGACAG	0.512000													12	35					0	0	0	0
SPESP1	246777	broad.mit.edu	37	15	69238891	69238891	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr15:69238891T>C	uc002arn.1	+	2	1146	c.1018T>C	c.(1018-1020)TCA>CCA	p.S340P	NOX5_uc002arp.1_Intron|NOX5_uc002arq.1_Intron|NOX5_uc010bid.1_Intron|NOX5_uc002aro.2_Intron	NM_145658	NP_663633	Q6UW49	SPESP_HUMAN	sperm equatorial segment protein 1 precursor	340					multicellular organismal development	acrosomal vesicle					0						TATGTGTAGATCAAGGAGAGT	0.264000													10	40					0	0	0	0
FAM108C1	58489	broad.mit.edu	37	15	81046631	81046631	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr15:81046631G>A	uc002bfu.2	+	3	1029	c.910G>A	c.(910-912)GGG>AGG	p.G304R	FAM108C1_uc002bft.2_Missense_Mutation_p.G263R	NM_021214	NP_067037	Q6PCB6	F108C_HUMAN	hypothetical protein LOC58489	304							hydrolase activity				0						TGAAGGGGCTGGGCATAATGA	0.473000													3	38					0	0	0	0
SNRPA1	6627	broad.mit.edu	37	15	101821964	101821964	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr15:101821964C>T	uc002bww.2	-	9	810	c.733G>A	c.(733-735)GAG>AAG	p.E245K	SNRPA1_uc002bwx.2_RNA|SNRPA1_uc010bpc.2_RNA	NM_003090	NP_003081	P09661	RU2A_HUMAN	small nuclear ribonucleoprotein polypeptide A'	245						catalytic step 2 spliceosome|nucleoplasm|U2 snRNP	protein binding|RNA binding			kidney(1)	1	Lung NSC(78;0.00156)|all_lung(78;0.00195)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00113)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TCTTCCATCTCTTCTTCACCA	0.348000													12	37					0	0	0	0
ZNF598	90850	broad.mit.edu	37	16	2052728	2052728	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:2052728G>A	uc002cof.1	-	6	486	c.471C>T	c.(469-471)TTC>TTT	p.F157F	ZNF598_uc002coe.1_5'Flank	NM_178167	NP_835461	Q86UK7	ZN598_HUMAN	zinc finger protein 598	157						intracellular	zinc ion binding			lung(1)|breast(1)	2						GCTCATATGTGAAGATCTACA	0.657000													3	10					0	0	0	0
C16orf90	646174	broad.mit.edu	37	16	3543865	3543865	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:3543865G>A	uc002cvi.2	-	3	523	c.523C>T	c.(523-525)CGC>TGC	p.R175C		NM_001080524	NP_001073993	A8MZG2	CP090_HUMAN	hypothetical protein LOC646174	165											0						GCCCCAGAGCGGGTTCTCTTG	0.662000													3	7					0	0	0	0
XYLT1	64131	broad.mit.edu	37	16	17221565	17221565	+	Silent	SNP	G	A	A	rs112238716		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:17221565G>A	uc002dfa.2	-	10	2266	c.2181C>T	c.(2179-2181)ATC>ATT	p.I727I		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	727	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GTGGGCTTGCGATCTTGAAGA	0.493000													28	145					0	0	0	0
SMG1	23049	broad.mit.edu	37	16	18840717	18840717	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:18840717G>C	uc002dfm.2	-	54	9857	c.9494C>G	c.(9493-9495)TCT>TGT	p.S3165C	SMG1_uc010bwb.2_Missense_Mutation_p.S3025C|SMG1_uc010bwa.2_Missense_Mutation_p.S1896C	NM_015092	NP_055907	Q96Q15	SMG1_HUMAN	PI-3-kinase-related kinase SMG-1	3165					DNA repair|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|peptidyl-serine phosphorylation|phosphatidylinositol phosphorylation|protein autophosphorylation	cytoplasm|nucleus	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			breast(5)|stomach(4)|lung(4)|kidney(2)|ovary(1)	16						AGTGTCGTAAGAACTTGCTAA	0.463000													3	41					0	0	0	0
NUPR1	26471	broad.mit.edu	37	16	28549476	28549476	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:28549476C>T	uc002dqe.1	-	2	380	c.113G>A	c.(112-114)GGA>GAA	p.G38E	uc010vct.1_Intron|NUPR1_uc002dqd.1_Missense_Mutation_p.G56E	NM_012385	NP_036517	O60356	NUPR1_HUMAN	p8 protein isoform b	38					cell growth|induction of apoptosis	nucleus					0						GCCTCCACCTCCTGTAACCAA	0.612000													18	103					0	0	0	0
SALL1	6299	broad.mit.edu	37	16	51175973	51175973	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:51175973C>T	uc010vgs.1	-	2	191	c.160G>A	c.(160-162)GAA>AAA	p.E54K	SALL1_uc010vgr.1_5'UTR|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	54					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TCTGATAATTCAAAGAACTCG	0.458000													20	119					0	0	0	0
HAS3	3038	broad.mit.edu	37	16	69148735	69148735	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:69148735C>G	uc010cfh.2	+	4	1452	c.1228C>G	c.(1228-1230)CTC>GTC	p.L410V	HAS3_uc002ewk.2_Intron|HAS3_uc002ewl.2_Missense_Mutation_p.L410V	NM_005329	NP_005320	O00219	HAS3_HUMAN	hyaluronan synthase 3 isoform a	410	Helical; Name=4; (Potential).				carbohydrate metabolic process	integral to plasma membrane	hyaluronan synthase activity				0		Ovarian(137;0.101)		OV - Ovarian serous cystadenocarcinoma(108;0.0694)		CTGGAACATTCTCCTCTTCCT	0.547000													4	94					0	0	0	0
MARVELD3	91862	broad.mit.edu	37	16	71674673	71674673	+	Silent	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:71674673C>T	uc002fau.2	+	3	1039	c.976C>T	c.(976-978)CTG>TTG	p.L326L	PHLPP2_uc002fav.2_RNA|MARVELD3_uc010cge.2_3'UTR	NM_001017967	NP_001017967	Q96A59	MALD3_HUMAN	MARVEL domain containing 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane				skin(1)	1		Ovarian(137;0.125)				CCACGTGGCTCTGCAGATCAA	0.587000													4	48					0	0	0	0
CHST6	4166	broad.mit.edu	37	16	75513583	75513583	+	Silent	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr16:75513583C>T	uc002fef.2	-	3	324	c.144G>A	c.(142-144)TCG>TCA	p.S48S	CHST6_uc002feg.1_RNA|CHST6_uc002feh.1_Silent_p.S48S	NM_021615	NP_067628	Q9GZX3	CHST6_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	48	Lumenal (Potential).				keratan sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						CCGAGCGCCACGAGGACAGCA	0.672000													3	21					0	0	0	0
OR3A1	4994	broad.mit.edu	37	17	3195220	3195220	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr17:3195220G>C	uc002fvh.1	-	1	657	c.657C>G	c.(655-657)ATC>ATG	p.I219M		NM_002550	NP_002541	P47881	OR3A1_HUMAN	olfactory receptor, family 3, subfamily A,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			kidney(2)|central_nervous_system(1)	3						GGATATAGGAGATGACAATGA	0.537000													12	26					0	0	0	0
TRPV3	162514	broad.mit.edu	37	17	3417907	3417907	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr17:3417907G>A	uc002fvt.1	-	17	2580	c.2258C>T	c.(2257-2259)CCG>CTG	p.P753L	SPATA22_uc010vrg.1_5'Flank|TRPV3_uc002fvs.1_RNA|TRPV3_uc010vrh.1_Missense_Mutation_p.P737L|TRPV3_uc010vri.1_Missense_Mutation_p.P708L|TRPV3_uc010vrj.1_Missense_Mutation_p.P737L|TRPV3_uc010vrk.1_RNA|TRPV3_uc010vrl.1_Missense_Mutation_p.P737L|TRPV3_uc010vrm.1_RNA|TRPV3_uc002fvr.2_Missense_Mutation_p.P753L|TRPV3_uc002fvu.2_Missense_Mutation_p.P753L	NM_145068	NP_659505	Q8NET8	TRPV3_HUMAN	transient receptor potential cation channel,	753	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(4)	4					Menthol(DB00825)	TACAGGCCCCGGGTCTTCGTT	0.408000													7	25					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577548	7577548	+	Missense_Mutation	SNP	C	T	T	rs28934575		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr17:7577548C>T	uc002gim.2	-	7	927	c.733G>A	c.(733-735)GGC>AGC	p.G245S	TP53_uc002gig.1_Missense_Mutation_p.G245S|TP53_uc002gih.2_Missense_Mutation_p.G245S|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.G113S|TP53_uc010cng.1_Missense_Mutation_p.G113S|TP53_uc002gii.1_Missense_Mutation_p.G113S|TP53_uc010cnh.1_Missense_Mutation_p.G245S|TP53_uc010cni.1_Missense_Mutation_p.G245S|TP53_uc002gij.2_Missense_Mutation_p.G245S|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.G152S|TP53_uc002gio.2_Missense_Mutation_p.G113S	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	245	|Interaction with HIPK1 (By similarity).|Interacts with the 53BP2 SH3 domain.|Interaction with AXIN1 (By similarity).		G -> N (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> A (in sporadic cancers; somatic mutation).|G -> V (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> F (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> R (in sporadic cancers; somatic mutation).|G -> E (in a sporadic cancer; somatic mutation).|G -> D (in LFS; germline mutation and in sporadic cancers; somatic mutation).|G -> H (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).|G -> L (in sporadic cancers; somatic mutation; requires 2 nucleotide substitutions).|G -> C (in LFS; germline mutation and in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G245S(274)|p.G245D(93)|p.G245V(50)|p.G245C(47)|p.G245R(10)|p.G245A(8)|p.0?(7)|p.G245G(3)|p.G245fs*2(3)|p.G245N(2)|p.G245H(1)|p.G245L(1)|p.G244fs*17(1)|p.G245F(1)|p.G245E(1)|p.C242_M246>L(1)|p.C238_M246delCNSSCMGGM(1)|p.S241_G245delSCMGG(1)|p.C242fs*98(1)|p.G245fs*22(1)|p.M243fs*18(1)|p.G245del(1)|p.G245fs*14(1)|p.G245fs*17(1)|p.G245fs*16(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CGGTTCATGCCGCCCATGCAG	0.577000	G245S(SKLMS1_SOFT_TISSUE)|G245S(LS1034_LARGE_INTESTINE)|G245S(NUGC2_STOMACH)|G245S(PANC0403_PANCREAS)|G245S(SKMEL2_SKIN)	111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			5	39					0	0	0	0
CHD3	1107	broad.mit.edu	37	17	7796803	7796803	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr17:7796803T>C	uc002gje.2	+	5	859	c.709T>C	c.(709-711)TCC>CCC	p.S237P	CHD3_uc002gjd.2_Missense_Mutation_p.S296P|CHD3_uc002gjf.2_Missense_Mutation_p.S237P|CHD3_uc002gjg.1_Missense_Mutation_p.S69P	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	237					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				CATAGCACCCTCCGGACCCCC	0.493000													4	6					0	0	0	0
RAB34	83871	broad.mit.edu	37	17	27042864	27042864	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr17:27042864C>A	uc002hce.2	-	4	892	c.268G>T	c.(268-270)GAG>TAG	p.E90*	RAB34_uc002hcg.2_Nonsense_Mutation_p.E90*|RAB34_uc002hcf.2_Nonsense_Mutation_p.E91*|RAB34_uc010was.1_Nonsense_Mutation_p.E147*|RAB34_uc010wat.1_Nonsense_Mutation_p.E147*|RAB34_uc002hch.2_Nonsense_Mutation_p.E90*|RAB34_uc010wau.1_Nonsense_Mutation_p.E68*|RAB34_uc010wav.1_Nonsense_Mutation_p.E148*	NM_031934	NP_114140	Q9BZG1	RAB34_HUMAN	Ras-related protein RAB34 isoform 1	90					protein transport|small GTPase mediated signal transduction	Golgi apparatus	GTP binding				0	Lung NSC(42;0.00431)					CGTTCCATCTCGAAGTCCACT	0.547000													29	105					1.80694e-10	1.92277e-10	1	0
GPR179	440435	broad.mit.edu	37	17	36483161	36483161	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr17:36483161G>A	uc002hpz.2	-	11	6312	c.6291C>T	c.(6289-6291)AGC>AGT	p.S2097S		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	2097	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				AACTGCCTCTGCTTCTGTCAG	0.582000													13	73					0	0	0	0
KCNH6	81033	broad.mit.edu	37	17	61621726	61621726	+	Silent	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr17:61621726C>T	uc002jay.2	+	12	2538	c.2458C>T	c.(2458-2460)CTG>TTG	p.L820L	KCNH6_uc010wpl.1_Silent_p.L661L|KCNH6_uc010wpm.1_Silent_p.L784L|KCNH6_uc002jaz.1_Silent_p.L731L	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	820	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TTGCTGGCCTCTGAAGCTGGG	0.617000													9	19					0	0	0	0
DSEL	92126	broad.mit.edu	37	18	65179743	65179743	+	Silent	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr18:65179743T>C	uc002lke.1	-	2	3357	c.2133A>G	c.(2131-2133)GGA>GGG	p.G711G		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	701						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				AAATCTGAAGTCCAGGATTGG	0.363000													11	45					0	0	0	0
ZNF491	126069	broad.mit.edu	37	19	11917375	11917375	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:11917375C>G	uc002mso.1	+	3	892	c.607C>G	c.(607-609)CGC>GGC	p.R203G		NM_152356	NP_689569	Q8N8L2	ZN491_HUMAN	zinc finger protein 491	203	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						CAGTTCCTTTCGCAGACATGA	0.438000													23	18					0	0	0	0
OR10H2	26538	broad.mit.edu	37	19	15839214	15839214	+	Missense_Mutation	SNP	G	A	A	rs113885700	byFrequency	TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:15839214G>A	uc002nbm.2	+	1	381	c.361G>A	c.(361-363)GAC>AAC	p.D121N		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					CATGGGCTACGACCGCTACGT	0.652000													6	55					0	0	0	0
GPATCH1	55094	broad.mit.edu	37	19	33587186	33587186	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:33587186C>T	uc002nug.1	+	7	1000	c.686C>T	c.(685-687)CCT>CTT	p.P229L		NM_018025	NP_060495	Q9BRR8	GPTC1_HUMAN	G patch domain containing 1	229						catalytic step 2 spliceosome	nucleic acid binding			skin(1)	1	Esophageal squamous(110;0.137)					GATTTCACACCTAAAGATAAT	0.438000													14	87					0	0	0	0
FCGBP	8857	broad.mit.edu	37	19	40420125	40420125	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:40420125C>G	uc002omp.3	-	6	2877	c.2869G>C	c.(2869-2871)GAT>CAT	p.D957H		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	957	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			ACCTGCCCATCTGCTGCTTGG	0.567000													8	45					0	0	0	0
CYP2F1	1572	broad.mit.edu	37	19	41622401	41622401	+	Silent	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:41622401A>G	uc002opu.1	+	3	269	c.213A>G	c.(211-213)GGA>GGG	p.G71G	CYP2F1_uc010xvw.1_5'UTR|CYP2F1_uc010xvv.1_Silent_p.G71G|CYP2F1_uc002opv.1_RNA	NM_000774	NP_000765	P24903	CP2F1_HUMAN	cytochrome P450, family 2, subfamily F,	71					naphthalene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0						TGCACCTGGGACCCAGGCGGG	0.612000													5	109					0	0	0	0
SYMPK	8189	broad.mit.edu	37	19	46319207	46319207	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:46319207C>T	uc002pdn.2	-	26	3834	c.3589G>A	c.(3589-3591)GAG>AAG	p.E1197K	RSPH6A_uc002pdm.2_5'Flank	NM_004819	NP_004810	Q92797	SYMPK_HUMAN	symplekin	1197					cell adhesion|mRNA processing	cytoplasm|cytoskeleton|nucleoplasm|tight junction	protein binding			ovary(1)	1		all_neural(266;0.0299)|Ovarian(192;0.0308)		OV - Ovarian serous cystadenocarcinoma(262;0.00509)|GBM - Glioblastoma multiforme(486;0.0593)		GTCTCGCACTCAGGCCCCTCC	0.597000													3	16					0	0	0	0
CCDC61	729440	broad.mit.edu	37	19	46509871	46509871	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:46509871C>T	uc002pdw.2	+	5	457	c.457C>T	c.(457-459)CGG>TGG	p.R153W		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		GGAGTCCCTGCGGAACCGCAA	0.632000													9	28					0	0	0	0
ZNF766	90321	broad.mit.edu	37	19	52785416	52785416	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:52785416A>T	uc002pyr.1	+	2	114	c.71A>T	c.(70-72)AAA>ATA	p.K24I	ZNF766_uc002pys.1_Missense_Mutation_p.K24I|ZNF766_uc002pyt.1_Missense_Mutation_p.K39I	NM_001010851	NP_001010851	Q5HY98	ZN766_HUMAN	zinc finger protein 766	24	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00236)|OV - Ovarian serous cystadenocarcinoma(262;0.00871)		GAGGAGTGGAAATGCCTGGAC	0.463000													32	152					0	0	0	0
CNOT3	4849	broad.mit.edu	37	19	54653382	54653382	+	Silent	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:54653382G>C	uc002qdj.1	+	13	1805	c.1494G>C	c.(1492-1494)GTG>GTC	p.V498V	CNOT3_uc010yel.1_Silent_p.V498V|CNOT3_uc002qdi.2_Silent_p.V411V|CNOT3_uc002qdk.1_Silent_p.V498V|CNOT3_uc010ere.1_RNA|CNOT3_uc002qdl.2_5'UTR	NM_014516	NP_055331	O75175	CNOT3_HUMAN	CCR4-NOT transcription complex, subunit 3	498	Pro-rich.				nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					GCCTCCTGGTGCCACTGCCTG	0.677000													5	23					0	0	0	0
ZNF211	10520	broad.mit.edu	37	19	58146066	58146066	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr19:58146066C>G	uc002qpq.2	+	2	340	c.160C>G	c.(160-162)CAG>GAG	p.Q54E	ZNF211_uc010yhb.1_Missense_Mutation_p.Q58E|ZNF211_uc002qpp.2_Missense_Mutation_p.Q67E|ZNF211_uc002qpr.2_Missense_Mutation_p.Q66E|ZNF211_uc002qps.2_Missense_Mutation_p.Q67E|ZNF211_uc002qpt.2_Missense_Mutation_p.Q66E|ZNF211_uc010yhc.1_Missense_Mutation_p.Q66E|ZNF211_uc010yhd.1_5'UTR|ZNF211_uc010yhe.1_5'UTR	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	54	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		TGATGAGGCTCAGAAACACCT	0.502000													12	84					0	0	0	0
CLIP4	79745	broad.mit.edu	37	2	29375604	29375604	+	Missense_Mutation	SNP	A	G	G	rs147860020		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:29375604A>G	uc002rmv.2	+	9	1314	c.1075A>G	c.(1075-1077)ATA>GTA	p.I359V	CLIP4_uc002rmu.2_Missense_Mutation_p.I359V|CLIP4_uc010ezm.1_Missense_Mutation_p.I359V|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.I341V	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	359										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					AAGGAAGAATATAACACACAC	0.363000													4	42					0	0	0	0
DYSF	8291	broad.mit.edu	37	2	71828648	71828648	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:71828648C>T	uc002sie.2	+	35	4239	c.3863C>T	c.(3862-3864)CCT>CTT	p.P1288L	DYSF_uc010feg.2_Missense_Mutation_p.P1319L|DYSF_uc010feh.2_Missense_Mutation_p.P1274L|DYSF_uc002sig.3_Missense_Mutation_p.P1274L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P1288L|DYSF_uc010fef.2_Missense_Mutation_p.P1305L|DYSF_uc010fei.2_Missense_Mutation_p.P1305L|DYSF_uc010fek.2_Missense_Mutation_p.P1306L|DYSF_uc010fej.2_Missense_Mutation_p.P1275L|DYSF_uc010fel.2_Missense_Mutation_p.P1275L|DYSF_uc010feo.2_Missense_Mutation_p.P1320L|DYSF_uc010fem.2_Missense_Mutation_p.P1289L|DYSF_uc010fen.2_Missense_Mutation_p.P1306L|DYSF_uc002sif.2_Missense_Mutation_p.P1289L|DYSF_uc010yqy.1_Missense_Mutation_p.P169L|DYSF_uc010yqz.1_Missense_Mutation_p.P28L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1288	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CACCATATTCCTGGTTTTGAG	0.512000													7	47					0	0	0	0
NCAPH	23397	broad.mit.edu	37	2	97007517	97007517	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:97007517G>A	uc002svz.1	+	2	241	c.157G>A	c.(157-159)GAA>AAA	p.E53K	NCAPH_uc010fhu.1_Missense_Mutation_p.E29K|NCAPH_uc010fhv.1_Missense_Mutation_p.E42K|NCAPH_uc010yum.1_Missense_Mutation_p.E29K|NCAPH_uc010fhw.1_Missense_Mutation_p.E42K|NCAPH_uc010yun.1_Intron|NCAPH_uc002swa.1_Intron	NM_015341	NP_056156	Q15003	CND2_HUMAN	non-SMC condensin I complex, subunit H	53					cell division|mitotic chromosome condensation	condensin complex|cytoplasm|microtubule cytoskeleton|nucleus				urinary_tract(1)|skin(1)	2		Ovarian(717;0.0221)				CCCAGTCCTCGAAGACTTTCC	0.597000													18	91					0	0	0	0
EPB41L5	57669	broad.mit.edu	37	2	120833323	120833323	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:120833323C>G	uc002tmg.2	+	7	625	c.499C>G	c.(499-501)CTG>GTG	p.L167V	EPB41L5_uc010flk.2_Missense_Mutation_p.L167V|EPB41L5_uc010fll.2_Missense_Mutation_p.L167V|EPB41L5_uc002tmh.3_Missense_Mutation_p.L167V|EPB41L5_uc010flm.2_5'Flank	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5	167	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						AGCTTATAATCTGCAAGGTAA	0.323000													10	56					0	0	0	0
POTEF	728378	broad.mit.edu	37	2	130832564	130832564	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:130832564G>A	uc010fmh.2	-	17	2881	c.2481C>T	c.(2479-2481)TTC>TTT	p.F827F		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	827	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						CTGGGGTGTTGAAGGTCTCAA	0.612000													32	118					0	0	0	0
NEB	4703	broad.mit.edu	37	2	152483523	152483523	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:152483523A>G	uc010fnx.2	-	66	9802	c.9611T>C	c.(9610-9612)ATG>ACG	p.M3204T		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3204	Nebulin 87.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CACCTTGTTCATATTGAGAGC	0.408000													16	61					0	0	0	0
HNRNPA3	220988	broad.mit.edu	37	2	178080540	178080540	+	Silent	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:178080540T>C	uc002ulb.1	+	3	364	c.258T>C	c.(256-258)GTT>GTC	p.V86V	HNRNPA3_uc002ulc.1_Silent_p.V86V|HNRNPA3_uc002uld.2_Silent_p.V64V|HNRNPA3_uc002ule.2_5'Flank	NM_194247	NP_919223	P51991	ROA3_HUMAN	heterogeneous nuclear ribonucleoprotein A3	86	RRM 1.					catalytic step 2 spliceosome|nucleolus|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(2)	2						ATTCTTGTGTTGAAGAGGTGG	0.408000													17	95					0	0	0	0
OSBPL6	114880	broad.mit.edu	37	2	179251794	179251794	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:179251794G>A	uc002ulx.2	+	20	2462	c.2084G>A	c.(2083-2085)AGA>AAA	p.R695K	OSBPL6_uc002uly.2_Missense_Mutation_p.R720K|OSBPL6_uc010zfe.1_Missense_Mutation_p.R664K|OSBPL6_uc002ulz.2_Missense_Mutation_p.R659K|OSBPL6_uc002uma.2_Missense_Mutation_p.R699K	NM_032523	NP_115912	Q9BZF3	OSBL6_HUMAN	oxysterol-binding protein-like protein 6 isoform	695					lipid transport		lipid binding			pancreas(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.00578)|Epithelial(96;0.00847)|all cancers(119;0.0335)			TTAGATATCAGATGGAAAAAC	0.398000													5	28					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179641976	179641976	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:179641976G>A	uc010zfg.1	-	27	4938	c.4714C>T	c.(4714-4716)CGA>TGA	p.R1572*	TTN_uc010zfh.1_Nonsense_Mutation_p.R1526*|TTN_uc010zfi.1_Nonsense_Mutation_p.R1526*|TTN_uc010zfj.1_Nonsense_Mutation_p.R1526*|TTN_uc002unb.2_Nonsense_Mutation_p.R1572*|uc002unc.1_RNA	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1572							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTTCAAGTCGGGAACCTTCC	0.393000													21	70					0	0	0	0
ORC2L	4999	broad.mit.edu	37	2	201791527	201791527	+	Silent	SNP	G	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:201791527G>T	uc002uwr.2	-	12	1271	c.1014C>A	c.(1012-1014)GTC>GTA	p.V338V	ORC2L_uc010zhj.1_Silent_p.V338V	NM_006190	NP_006181	Q13416	ORC2_HUMAN	origin recognition complex, subunit 2	338					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0						AGCCATTGATGACAACGTGAA	0.388000													9	75					0.00621372	0.00632808	1	0
GIGYF2	26058	broad.mit.edu	37	2	233684583	233684583	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr2:233684583G>A	uc002vti.3	+	23	2754	c.2417G>A	c.(2416-2418)CGA>CAA	p.R806Q	GIGYF2_uc002vtg.2_Missense_Mutation_p.R800Q|GIGYF2_uc002vtj.3_Missense_Mutation_p.R827Q|GIGYF2_uc002vtk.3_Missense_Mutation_p.R806Q|GIGYF2_uc002vth.3_Missense_Mutation_p.R800Q|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.R637Q|GIGYF2_uc002vtq.3_Missense_Mutation_p.R139Q	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	806	Gln-rich.|Glu-rich.				cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		GCATTAAGGCGACAGCGAGAA	0.512000													5	22					0	0	0	0
HAO1	54363	broad.mit.edu	37	20	7866452	7866452	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr20:7866452G>A	uc002wmw.1	-	6	897	c.873C>T	c.(871-873)GAC>GAT	p.D291D	HAO1_uc010gbu.2_Silent_p.D291D	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	291	FMN binding.|FMN hydroxy acid dehydrogenase.|FMN (By similarity).				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						GCACACCCCCGTCCAGGAAGA	0.502000													15	120					0	0	0	0
XRN2	22803	broad.mit.edu	37	20	21335499	21335499	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr20:21335499C>T	uc002wsf.1	+	21	2104	c.2009C>T	c.(2008-2010)ACT>ATT	p.T670I	XRN2_uc002wsg.1_Missense_Mutation_p.T594I|XRN2_uc010zsk.1_Missense_Mutation_p.T616I	NM_012255	NP_036387	Q9H0D6	XRN2_HUMAN	5'-3' exoribonuclease 2	670					cell growth|DNA catabolic process, exonucleolytic|mRNA processing|regulation of transcription, DNA-dependent|RNA catabolic process|spermatogenesis|transcription termination, DNA-dependent	nucleolus	5'-3' exoribonuclease activity|nucleic acid binding|protein binding|zinc ion binding			skin(1)	1						CCAGACCTCACTCCAGAAGAG	0.398000													3	25					0	0	0	0
PFKL	5211	broad.mit.edu	37	21	45746680	45746680	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr21:45746680G>A	uc002zel.2	+	22	2337	c.2278G>A	c.(2278-2280)GCC>ACC	p.A760T	PFKL_uc002zek.2_Missense_Mutation_p.A807T|PFKL_uc002zem.2_Missense_Mutation_p.A347T|PFKL_uc002zen.2_Missense_Mutation_p.A347T	NM_002626	NP_002617	P17858	K6PL_HUMAN	liver phosphofructokinase	760					fructose 6-phosphate metabolic process|glycolysis|protein oligomerization	6-phosphofructokinase complex	6-phosphofructokinase activity|ATP binding|fructose-6-phosphate binding|identical protein binding|kinase binding|metal ion binding				0				Colorectal(79;0.0811)		CAGTATGGCCGCCTACGTGTC	0.667000													3	9					0	0	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072823	17072823	+	Silent	SNP	G	A	A	rs137862002		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr22:17072823G>A	uc002zlp.1	-	1	878	c.618C>T	c.(616-618)TGC>TGT	p.C206C		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	206					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				CGGGCAGCGCGCACACCCCAA	0.617000													4	83					0	0	0	0
LOC96610	96610	broad.mit.edu	37	22	22385794	22385794	+	RNA	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr22:22385794C>T	uc011aim.1	+	2		c.274C>T			uc002zvu.2_Intron					Parts of antibodies, mostly variable regions.												0						TGGGGCTGAGCGCTACCTCAC	0.577000													9	59					0	0	0	0
POM121L9P	29774	broad.mit.edu	37	22	24659578	24659578	+	RNA	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr22:24659578A>G	uc002zzs.3	+	7		c.3310A>G			uc011ajp.1_5'Flank	NR_003714				Homo sapiens mRNA; cDNA DKFZp434P211 (from clone DKFZp434P211).												0						TGCGCAGGCCAACACTCACTG	0.617000													3	16					0	0	0	0
MYH9	4627	broad.mit.edu	37	22	36710351	36710351	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr22:36710351C>G	uc003apg.2	-	13	1624	c.1393G>C	c.(1393-1395)GAG>CAG	p.E465Q	MYH9_uc003aph.1_Missense_Mutation_p.E329Q	NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	465	Myosin head-like.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						CACAGCTGCTCAAACGAGTTC	0.547000			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				14	32					0	0	0	0
PICK1	9463	broad.mit.edu	37	22	38465066	38465066	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr22:38465066G>A	uc003auq.2	+	6	766	c.376G>A	c.(376-378)GTG>ATG	p.V126M	PICK1_uc003aur.2_Missense_Mutation_p.V126M|PICK1_uc003aus.2_Missense_Mutation_p.V126M|PICK1_uc003aut.2_Missense_Mutation_p.V126M	NM_012407	NP_036539	Q9NRD5	PICK1_HUMAN	protein interacting with C kinase 1	126					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|DNA methylation involved in embryo development|DNA methylation involved in gamete generation|monoamine transport|neuronal ion channel clustering|protein phosphorylation|receptor clustering|retrograde vesicle-mediated transport, Golgi to ER|synaptic transmission	cell junction|endocytic vesicle membrane|Golgi apparatus|perinuclear region of cytoplasm|presynaptic membrane	ATPase activity|metal ion binding|protein C-terminus binding|protein kinase C binding|receptor binding				0	Melanoma(58;0.045)					GCACCGGCTGGTGGAGAACAT	0.632000													10	15					0	0	0	0
IL17RC	84818	broad.mit.edu	37	3	9960234	9960234	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:9960234C>T	uc003bua.2	+	5	855	c.619C>T	c.(619-621)CGC>TGC	p.R207C	CIDEC_uc003bto.2_Intron|IL17RC_uc010hcr.2_RNA|IL17RC_uc011ato.1_RNA|IL17RC_uc010hcs.2_Missense_Mutation_p.R111C|IL17RC_uc003btz.2_Missense_Mutation_p.R136C|IL17RC_uc011atp.1_Missense_Mutation_p.R7C|IL17RC_uc003bud.2_5'UTR|IL17RC_uc003bub.2_Missense_Mutation_p.R136C|IL17RC_uc010hct.2_Missense_Mutation_p.R136C|IL17RC_uc010hcu.2_Missense_Mutation_p.R136C|IL17RC_uc010hcv.2_Missense_Mutation_p.R136C|IL17RC_uc011atq.1_Missense_Mutation_p.R136C|IL17RC_uc003buc.2_5'UTR	NM_153461	NP_703191	Q8NAC3	I17RC_HUMAN	interleukin 17 receptor C isoform 1 precursor	207	Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(1)|pancreas(1)	2						CCCTACTGCCCGCTGCGTCCT	0.572000													8	51					0	0	0	0
C3orf10	55845	broad.mit.edu	37	3	10157479	10157479	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:10157479A>G	uc003bvb.2	+	1	147	c.94A>G	c.(94-96)ATC>GTC	p.I32V		NM_018462	NP_060932	Q8WUW1	BRK1_HUMAN	chromosome 3 open reading frame 10	32						cytoplasm|cytoskeleton					0						CATCAAGAAAATCGCAGACTT	0.632000													7	30					0	0	0	0
RARB	5915	broad.mit.edu	37	3	25611301	25611301	+	Silent	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:25611301C>T	uc011awl.1	+	4	588	c.522C>T	c.(520-522)TGC>TGT	p.C174C	RARB_uc003cdi.1_Silent_p.C55C|RARB_uc003cdh.2_Silent_p.C167C	NM_016152	NP_057236	P10826	RARB_HUMAN	retinoic acid receptor, beta isoform 2	174	Hinge.				embryonic digestive tract development|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	protein binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|large_intestine(1)|pancreas(1)	3					Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tamibarotene(DB04942)|Tazarotene(DB00799)	AGCAAGAATGCACAGAGAGCT	0.493000													5	43					0	0	0	0
TRAK1	22906	broad.mit.edu	37	3	42242386	42242386	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:42242386A>G	uc003cky.2	+	12	1483	c.1267A>G	c.(1267-1269)ATG>GTG	p.M423V	TRAK1_uc011azh.1_Missense_Mutation_p.M423V|TRAK1_uc011azi.1_Missense_Mutation_p.M423V|TRAK1_uc003ckz.3_Missense_Mutation_p.M349V|TRAK1_uc011azj.1_Missense_Mutation_p.M349V|TRAK1_uc003cla.2_Missense_Mutation_p.M365V	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	423	Interaction with HGS.				endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						CCCTTCTCCCATGAACATCCC	0.567000													13	67					0	0	0	0
KIF15	56992	broad.mit.edu	37	3	44852484	44852484	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:44852484G>A	uc003cnx.3	+	17	2267	c.2118G>A	c.(2116-2118)GAG>GAA	p.E706E	KIF15_uc010hiq.2_Silent_p.E609E|KIF15_uc003cny.1_Silent_p.E341E	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	706	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		TTCCTCCTGAGATGAATGAAC	0.343000													9	50					0	0	0	0
SLC12A8	84561	broad.mit.edu	37	3	124810400	124810400	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:124810400C>A	uc003ehv.3	-	12	1915	c.1804G>T	c.(1804-1806)GCT>TCT	p.A602S	SLC12A8_uc003ehw.3_Missense_Mutation_p.A631S|SLC12A8_uc003eht.3_Missense_Mutation_p.A403S|SLC12A8_uc003ehu.3_Missense_Mutation_p.A355S|SLC12A8_uc010hry.2_Intron	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	602	Helical; (Potential).				potassium ion transport	integral to membrane	symporter activity				0						GACCCAACAGCCTGTGAAAAC	0.468000													10	26					0.00621372	0.00632808	1	0
VEPH1	79674	broad.mit.edu	37	3	157031448	157031448	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:157031448C>G	uc003fbj.1	-	11	2289	c.1972G>C	c.(1972-1974)GAA>CAA	p.E658Q	VEPH1_uc003fbk.1_Missense_Mutation_p.E658Q|VEPH1_uc010hvu.1_Intron	NM_024621	NP_078897	Q14D04	MELT_HUMAN	ventricular zone expressed PH domain homolog 1	658						plasma membrane				breast(3)|ovary(1)|lung(1)	5			Lung(72;0.0272)|LUSC - Lung squamous cell carcinoma(72;0.0461)			ATGGCAGTTTCAAAGCTGTGA	0.478000													12	46					0	0	0	0
SI	6476	broad.mit.edu	37	3	164764678	164764678	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:164764678T>A	uc003fei.2	-	16	1900	c.1838A>T	c.(1837-1839)GAA>GTA	p.E613V		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	613	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TATAGACCATTCCATTTGTTC	0.383000										HNSCC(35;0.089)			29	91					0	0	0	0
KLHL24	54800	broad.mit.edu	37	3	183368442	183368442	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:183368442A>G	uc003flv.2	+	3	593	c.298A>G	c.(298-300)AGG>GGG	p.R100G	KLHL24_uc003flw.2_Missense_Mutation_p.R100G|KLHL24_uc003flx.2_Missense_Mutation_p.R100G	NM_017644	NP_060114	Q6TFL4	KLH24_HUMAN	DRE1 protein	100	BTB.					axon|cytoplasm|perikaryon				ovary(1)	1	all_cancers(143;2.88e-10)|Ovarian(172;0.0303)		all cancers(12;1.43e-42)|Epithelial(37;1.73e-36)|OV - Ovarian serous cystadenocarcinoma(80;8.75e-22)			TAATGACCACAGGGAAAGCCG	0.398000													52	119					0	0	0	0
RTP1	132112	broad.mit.edu	37	3	186917476	186917476	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr3:186917476C>T	uc003frg.2	+	2	440	c.410C>T	c.(409-411)ACG>ATG	p.T137M		NM_153708	NP_714919	P59025	RTP1_HUMAN	receptor transporting protein 1	137	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding			ovary(2)|breast(1)	3	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.56e-18)	GBM - Glioblastoma multiforme(93;0.0269)		GAGTGCGGCACGGCGCGGCTG	0.662000													8	40					0	0	0	0
KLB	152831	broad.mit.edu	37	4	39449964	39449964	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr4:39449964C>G	uc003gua.2	+	5	2890	c.2793C>G	c.(2791-2793)TTC>TTG	p.F931L	KLB_uc011byj.1_Missense_Mutation_p.F922L	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	931	Extracellular (Potential).|Glycosyl hydrolase-1 2.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						ATTATGCATTCAAACTGGCTG	0.323000													7	34					0	0	0	0
SLC4A4	8671	broad.mit.edu	37	4	72316995	72316995	+	Silent	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr4:72316995T>C	uc003hfy.2	+	11	1416	c.1299T>C	c.(1297-1299)TGT>TGC	p.C433C	SLC4A4_uc010iic.2_Silent_p.C433C|SLC4A4_uc010iib.2_Silent_p.C433C|SLC4A4_uc003hfz.2_Silent_p.C433C|SLC4A4_uc003hgc.3_Silent_p.C389C|SLC4A4_uc010iid.2_5'UTR|SLC4A4_uc003hga.2_Silent_p.C311C|SLC4A4_uc003hgb.3_Silent_p.C389C	NM_001098484	NP_001091954	Q9Y6R1	S4A4_HUMAN	solute carrier family 4, sodium bicarbonate	433	Cytoplasmic (Potential).					basolateral plasma membrane|integral to plasma membrane	inorganic anion exchanger activity|protein binding|sodium:bicarbonate symporter activity			ovary(3)|kidney(1)|skin(1)	5			Lung(101;0.0739)|LUSC - Lung squamous cell carcinoma(112;0.225)			ATGGGGATTGTGAAGAATTGC	0.433000													8	39					0	0	0	0
FAM13A	10144	broad.mit.edu	37	4	89660214	89660214	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr4:89660214C>G	uc003hse.1	-	20	2737	c.2529G>C	c.(2527-2529)CAG>CAC	p.Q843H	FAM13A_uc011cdp.1_5'Flank|FAM13A_uc003hsa.1_Missense_Mutation_p.Q314H|FAM13A_uc003hsb.1_Missense_Mutation_p.Q517H|FAM13A_uc003hsd.1_Missense_Mutation_p.Q517H|FAM13A_uc003hsc.1_Missense_Mutation_p.Q503H|FAM13A_uc011cdq.1_Missense_Mutation_p.Q489H|FAM13A_uc003hsf.1_Missense_Mutation_p.Q429H|FAM13A_uc003hsg.1_Missense_Mutation_p.Q314H	NM_014883	NP_055698	O94988	FA13A_HUMAN	family with sequence similarity 13, member A1	843					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|liver(1)	2						GGGAGAGGATCTGTTTGACCA	0.493000													8	32					0	0	0	0
UNC5C	8633	broad.mit.edu	37	4	96256763	96256763	+	Silent	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr4:96256763T>C	uc003htp.1	-	2	298	c.144A>G	c.(142-144)GAA>GAG	p.E48E	UNC5C_uc010ilc.1_Silent_p.E48E|UNC5C_uc003htq.2_Silent_p.E48E	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	48	Extracellular (Potential).				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		TTTCTGGGAGTTCATGAAAAA	0.393000													5	24					0	0	0	0
PRDM5	11107	broad.mit.edu	37	4	121732584	121732584	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr4:121732584T>C	uc003idn.2	-	8	1136	c.886A>G	c.(886-888)ATA>GTA	p.I296V	PRDM5_uc003ido.2_Missense_Mutation_p.I265V|PRDM5_uc010ine.2_Missense_Mutation_p.I265V	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	296	C2H2-type 5.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						ACTGAACATATAAGCTTTTTC	0.299000													4	27					0	0	0	0
PCDH18	54510	broad.mit.edu	37	4	138450946	138450946	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr4:138450946T>C	uc003ihe.3	-	1	2684	c.2297A>G	c.(2296-2298)AAT>AGT	p.N766S	PCDH18_uc003ihf.3_Missense_Mutation_p.N759S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.N546S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	766	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CAGAGTGCCATTTATGGTAGG	0.517000													11	55					0	0	0	0
NPR3	4883	broad.mit.edu	37	5	32712139	32712139	+	Missense_Mutation	SNP	A	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr5:32712139A>G	uc003jhv.2	+	1	475	c.257A>G	c.(256-258)AAC>AGC	p.N86S	NPR3_uc010iuo.2_Intron|NPR3_uc011cnz.1_Intron|NPR3_uc003jhu.2_Missense_Mutation_p.N86S	NM_000908	NP_000899	P17342	ANPRC_HUMAN	natriuretic peptide receptor C/guanylate cyclase	86	Extracellular (Potential).				osteoclast proliferation|positive regulation of urine volume|regulation of blood pressure|regulation of osteoblast proliferation|skeletal system development	integral to membrane	hormone binding|natriuretic peptide receptor activity			ovary(1)|central_nervous_system(1)	2					Nesiritide(DB04899)	GTGGAGGGCAACGGGACTGGG	0.632000													4	46					0	0	0	0
GZMK	3003	broad.mit.edu	37	5	54329703	54329703	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr5:54329703G>C	uc003jpl.1	+	5	788	c.744G>C	c.(742-744)AAG>AAC	p.K248N		NM_002104	NP_002095	P49863	GRAK_HUMAN	granzyme K precursor	248	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				TGTTAACCAAGAAATACCAGA	0.423000													6	58					0	0	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431659	140431659	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr5:140431659C>T	uc003lik.1	+	1	681	c.604C>T	c.(604-606)CGA>TGA	p.R202*		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	202	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCCCTGGACCGAGAGGAGCA	0.577000													4	27					0	0	0	0
TLX3	30012	broad.mit.edu	37	5	170738466	170738466	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr5:170738466G>A	uc003mbf.2	+	3	821	c.739G>A	c.(739-741)GCC>ACC	p.A247T	uc003mbe.1_5'Flank	NM_021025	NP_066305	O43711	TLX3_HUMAN	T-cell leukemia homeobox 3	247						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1	Renal(175;0.000159)|Lung NSC(126;0.00576)|all_lung(126;0.00963)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GCAACACGACGCCTTCCAAAA	0.652000			T	BCL11B	T-ALL								5	14					0	0	0	0
TDP2	51567	broad.mit.edu	37	6	24658077	24658077	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:24658077G>A	uc003nej.2	-	4	505	c.480C>T	c.(478-480)TAC>TAT	p.Y160Y	TDP2_uc003nei.2_Silent_p.Y48Y|TDP2_uc010jpu.1_Silent_p.Y160Y	NM_016614	NP_057698	O95551	TYDP2_HUMAN	TRAF and TNF receptor-associated protein	160					cell surface receptor linked signaling pathway|double-strand break repair	PML body	5'-tyrosyl-DNA phosphodiesterase activity|magnesium ion binding|nuclease activity|protein binding|transcription corepressor activity			ovary(1)|lung(1)	2						TCTTCTTTAGGTAGCTATAAT	0.299000								Direct_reversal_of_damage|Editing_and_processing_nucleases					10	51					0	0	0	0
DHX16	8449	broad.mit.edu	37	6	30624814	30624814	+	Missense_Mutation	SNP	T	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:30624814T>A	uc003nqz.2	-	13	2275	c.2063A>T	c.(2062-2064)TAT>TTT	p.Y688F	DHX16_uc003nqy.2_Missense_Mutation_p.Y207F|DHX16_uc011dmo.1_Missense_Mutation_p.Y628F	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	688	Helicase C-terminal.				mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						ATCCAGCACATAAATGATGCC	0.542000													5	24					0	0	0	0
ITPR3	3710	broad.mit.edu	37	6	33636358	33636358	+	Silent	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:33636358C>G	uc011drk.1	+	17	2172	c.1953C>G	c.(1951-1953)CTC>CTG	p.L651L		NM_002224	NP_002215	Q14573	ITPR3_HUMAN	inositol 1,4,5-triphosphate receptor, type 3	651	Cytoplasmic (Potential).				activation of phospholipase C activity|calcium ion transport into cytosol|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|protein heterooligomerization|protein homooligomerization|regulation of insulin secretion|response to calcium ion	apical part of cell|brush border|endoplasmic reticulum membrane|integral to plasma membrane|myelin sheath|neuronal cell body|nuclear outer membrane|platelet dense tubular network membrane	inositol 1,3,4,5 tetrakisphosphate binding|inositol 1,4,5 trisphosphate binding|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|inositol hexakisphosphate binding|intracellular ligand-gated calcium channel activity|protein binding			ovary(6)|lung(5)|central_nervous_system(5)|breast(2)|kidney(1)	19						CCCAAGAGCTCATCTGCAAGT	0.617000													12	37					0	0	0	0
TRERF1	55809	broad.mit.edu	37	6	42222641	42222641	+	Silent	SNP	C	T	T	rs143046982		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:42222641C>T	uc003osd.2	-	13	3167	c.2604G>A	c.(2602-2604)CTG>CTA	p.L868L	TRERF1_uc011duq.1_Silent_p.L785L|TRERF1_uc003osb.2_Silent_p.L624L|TRERF1_uc003osc.2_Silent_p.L624L|TRERF1_uc003ose.2_Silent_p.L888L	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	868	ELM2.|Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CAGGCTTCCGCAGTAGCAGCA	0.522000													12	31					0	0	0	0
KLHDC3	116138	broad.mit.edu	37	6	42986153	42986153	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:42986153C>T	uc003otl.2	+	6	761	c.592C>T	c.(592-594)CGT>TGT	p.R198C	KLHDC3_uc003otm.2_RNA|KLHDC3_uc010jyf.2_Missense_Mutation_p.R174C|KLHDC3_uc003otn.2_Missense_Mutation_p.R82C|KLHDC3_uc003oto.2_Missense_Mutation_p.R139C	NM_057161	NP_476502	Q9BQ90	KLDC3_HUMAN	kelch domain containing 3	198	Kelch 4.				reciprocal meiotic recombination	cytoplasm|nuclear chromatin	chromatin binding|protein binding			upper_aerodigestive_tract(1)	1			Colorectal(64;0.00237)|all cancers(41;0.0034)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0539)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CTTTGGGGGCCGTGCCGACCG	0.577000													26	41					0	0	0	0
MCM3	4172	broad.mit.edu	37	6	52141938	52141938	+	Silent	SNP	T	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:52141938T>A	uc003pan.1	-	8	1202	c.1092A>T	c.(1090-1092)CGA>CGT	p.R364R	MCM3_uc011dwu.1_Silent_p.R318R	NM_002388	NP_002379	P25205	MCM3_HUMAN	minichromosome maintenance complex component 3	364	MCM.				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	alpha DNA polymerase:primase complex|centrosome|MCM complex|perinuclear region of cytoplasm	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)|lung(1)|skin(1)	3	Lung NSC(77;0.0931)					TGGGGATAGCTCGGGGTGCAG	0.592000													12	50					0	0	0	0
COL19A1	1310	broad.mit.edu	37	6	70639472	70639472	+	Silent	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:70639472C>T	uc003pfc.1	+	6	663	c.546C>T	c.(544-546)GTC>GTT	p.V182V	COL19A1_uc010kam.1_Silent_p.V78V	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	182	TSP N-terminal.				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						AATCCCAGGTCATTTCACTTT	0.418000													11	68					0	0	0	0
FAM184A	79632	broad.mit.edu	37	6	119295660	119295660	+	Missense_Mutation	SNP	T	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:119295660T>C	uc003pyj.2	-	14	3196	c.2848A>G	c.(2848-2850)ATC>GTC	p.I950V	FAM184A_uc003pyk.3_Intron|FAM184A_uc003pyl.3_Intron|FAM184A_uc003pyi.2_RNA	NM_024581	NP_078857	Q8NB25	F184A_HUMAN	hypothetical protein LOC79632 isoform 1	950										ovary(2)|central_nervous_system(2)|skin(2)|pancreas(1)	7						GCCCGCATGATATTTTTCTCT	0.338000													58	177					0	0	0	0
CNKSR3	154043	broad.mit.edu	37	6	154831199	154831199	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:154831199C>G	uc003qpy.2	-	1	555	c.50G>C	c.(49-51)AGA>ACA	p.R17T		NM_173515	NP_775786	Q6P9H4	CNKR3_HUMAN	CNKSR family member 3	17	SAM.				negative regulation of ERK1 and ERK2 cascade|negative regulation of peptidyl-serine phosphorylation|positive regulation of sodium ion transport	cytoplasm|membrane				ovary(2)|breast(1)|skin(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;5.03e-11)|BRCA - Breast invasive adenocarcinoma(81;0.00627)		CCGCGCACCTCTAGTCCAGTC	0.647000													21	126					0	0	0	0
RPS6KA2	6196	broad.mit.edu	37	6	166944753	166944753	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr6:166944753C>T	uc003qvb.1	-	3	484	c.265G>A	c.(265-267)GCC>ACC	p.A89T	RPS6KA2_uc011ego.1_5'UTR|RPS6KA2_uc010kkl.1_5'UTR|RPS6KA2_uc003qvc.1_Missense_Mutation_p.A97T|RPS6KA2_uc003qvd.1_Missense_Mutation_p.A114T	NM_021135	NP_066958	Q15349	KS6A2_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	89	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|skin(2)|large_intestine(1)|central_nervous_system(1)	8		Breast(66;2.04e-05)|Ovarian(120;0.0652)|Prostate(117;0.105)		OV - Ovarian serous cystadenocarcinoma(33;2.76e-18)|GBM - Glioblastoma multiforme(31;9.94e-06)|BRCA - Breast invasive adenocarcinoma(81;1.36e-05)		ACCTTCATGGCGTAGAGCTGC	0.502000													17	85					0	0	0	0
ASNS	440	broad.mit.edu	37	7	97498327	97498327	+	Missense_Mutation	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr7:97498327G>C	uc003uot.3	-	3	648	c.142C>G	c.(142-144)CAC>GAC	p.H48D	ASNS_uc011kin.1_Intron|ASNS_uc003uou.3_Missense_Mutation_p.H48D|ASNS_uc003uov.3_Missense_Mutation_p.H48D|ASNS_uc011kio.1_Missense_Mutation_p.H27D|ASNS_uc003uow.3_Missense_Mutation_p.H27D|ASNS_uc003uox.3_Intron	NM_133436	NP_597680	P08243	ASNS_HUMAN	asparagine synthetase	48	Glutamine amidotransferase type-2.				cellular response to glucose starvation|glutamine metabolic process|negative regulation of apoptosis|positive regulation of mitotic cell cycle	cytosol|soluble fraction	asparagine synthase (glutamine-hydrolyzing) activity|ATP binding			ovary(1)	1	all_cancers(62;6.64e-09)|all_epithelial(64;1.58e-09)|Esophageal squamous(72;0.00448)|Lung NSC(181;0.0342)|all_lung(186;0.0369)				Adenosine triphosphate(DB00171)|L-Asparagine(DB00174)|L-Aspartic Acid(DB00128)|L-Glutamic Acid(DB00142)|L-Glutamine(DB00130)	GCCAACCGGTGAAATCCAAAG	0.448000													13	49					0	0	0	0
LAMB4	22798	broad.mit.edu	37	7	107696162	107696162	+	Missense_Mutation	SNP	C	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr7:107696162C>A	uc010ljo.1	-	25	3754	c.3670G>T	c.(3670-3672)GTG>TTG	p.V1224L	LAMB4_uc003vey.2_Missense_Mutation_p.V1224L|LAMB4_uc010ljp.1_Missense_Mutation_p.V193L	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1224	Domain II.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						ATTTCAGACACGTTCCCTCTG	0.423000													16	62					6.31663e-08	6.67873e-08	1	0
LAMB4	22798	broad.mit.edu	37	7	107696408	107696408	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr7:107696408G>A	uc010ljo.1	-	25	3508	c.3424C>T	c.(3424-3426)CCA>TCA	p.P1142S	LAMB4_uc003vey.2_Missense_Mutation_p.P1142S|LAMB4_uc010ljp.1_Missense_Mutation_p.P111S	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1142	Laminin EGF-like 13.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CCTGTGTCTGGATCACAGATG	0.532000													8	36					0	0	0	0
FAM110B	90362	broad.mit.edu	37	8	59059573	59059573	+	Missense_Mutation	SNP	G	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr8:59059573G>T	uc003xtj.1	+	5	1664	c.784G>T	c.(784-786)GAC>TAC	p.D262Y		NM_147189	NP_671722	Q8TC76	F110B_HUMAN	hypothetical protein LOC90362	262						microtubule organizing center|mitochondrion|nucleus				large_intestine(1)	1		all_epithelial(80;0.025)|all_lung(136;0.0274)|Lung NSC(129;0.0355)				GTCTAAGTCAGACTTGAGTGA	0.562000													13	94					9.31168e-06	9.66087e-06	1	0
MAPK15	225689	broad.mit.edu	37	8	144802878	144802878	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr8:144802878G>A	uc003yzj.2	+	9	826	c.785G>A	c.(784-786)CGA>CAA	p.R262Q		NM_139021	NP_620590	Q8TD08	MK15_HUMAN	mitogen-activated protein kinase 15	262	Protein kinase.				protein autophosphorylation	extracellular region	ATP binding|MAP kinase activity|SH3 domain binding			lung(2)	2	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CACAGGCCACGACAGACGCTG	0.662000													3	28					0	0	0	0
EXOSC4	54512	broad.mit.edu	37	8	145135305	145135305	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr8:145135305C>T	uc003zau.2	+	3	649	c.539C>T	c.(538-540)GCT>GTT	p.A180V	GPAA1_uc003zav.1_5'Flank|GPAA1_uc003zaw.1_5'Flank|GPAA1_uc003zax.2_5'Flank	NM_019037	NP_061910	Q9NPD3	EXOS4_HUMAN	exosome component 4	180					DNA deamination|exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|maturation of 5.8S rRNA|nuclear mRNA surveillance|positive regulation of cell growth	cytosol|exosome (RNase complex)|nucleolus|transcriptionally active chromatin	3'-5'-exoribonuclease activity|AU-rich element binding|protein binding				0	all_cancers(97;2.87e-11)|all_epithelial(106;2.16e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.48e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GAGGAAGCAGCTGGTGGCCCC	0.657000													7	64					0	0	0	0
SMARCA2	6595	broad.mit.edu	37	9	2086833	2086833	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:2086833G>A	uc003zhc.2	+	18	2630	c.2531G>A	c.(2530-2532)CGG>CAG	p.R844Q	SMARCA2_uc003zhd.2_Missense_Mutation_p.R844Q|SMARCA2_uc010mha.2_Missense_Mutation_p.R835Q	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	844	Helicase ATP-binding.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		TTATAGATTCGGTGGAAATAC	0.468000													15	56					0	0	0	0
ZCCHC6	79670	broad.mit.edu	37	9	88925620	88925620	+	Splice_Site	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:88925620C>T	uc004aoq.2	-	18	3593	c.3378_splice	c.e18+1	p.L1126_splice	ZCCHC6_uc010mqe.2_Splice_Site_p.L64_splice|ZCCHC6_uc011ltf.1_Intron|ZCCHC6_uc004aor.2_Splice_Site|ZCCHC6_uc004aos.2_Splice_Site|ZCCHC6_uc004aot.2_Splice_Site_p.L890_splice|ZCCHC6_uc004aou.2_Splice_Site_p.L1126_splice	NM_024617	NP_078893	Q5VYS8	TUT7_HUMAN	zinc finger, CCHC domain containing 6						RNA 3'-end processing		nucleic acid binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)	2						AAAAATCTTACCAATGTGTTA	0.353000													4	21					0	0	0	0
Unknown	0	broad.mit.edu	37	9	90746760	90746760	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:90746760C>T	uc011lti.1	-	4	1221	c.1192G>A	c.(1192-1194)GAA>AAA	p.E398K						SubName: Full=cDNA FLJ59639;																		AAAGGCCTTTCAGGGTGCTGA	0.488000													35	167					0	0	0	0
FAM22F	54754	broad.mit.edu	37	9	97080990	97080990	+	Silent	SNP	A	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:97080990A>T	uc004aup.1	-	7	2049	c.2028T>A	c.(2026-2028)CTT>CTA	p.L676L		NM_017561	NP_060031	A1L443	FA22F_HUMAN	hypothetical protein LOC54754	676											0		Acute lymphoblastic leukemia(62;0.136)				ATGGAGACTGAAGAGCTCCCT	0.612000													5	15					0	0	0	0
LPPR1	54886	broad.mit.edu	37	9	104071492	104071492	+	Splice_Site	SNP	G	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:104071492G>T	uc004bbb.2	+	5	785	c.386_splice	c.e5-1	p.G129_splice	LPPR1_uc011lvi.1_Splice_Site_p.G105_splice|LPPR1_uc004bbc.2_Splice_Site_p.G129_splice|LPPR1_uc010mtc.2_Splice_Site_p.G113_splice	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3							integral to membrane	catalytic activity				0						TCTTCTTATAGGGGTGTTTGC	0.413000													11	99					6.40141e-05	6.60021e-05	1	0
LPPR1	54886	broad.mit.edu	37	9	104071519	104071519	+	Missense_Mutation	SNP	A	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:104071519A>T	uc004bbb.2	+	5	811	c.412A>T	c.(412-414)ACT>TCT	p.T138S	LPPR1_uc011lvi.1_Missense_Mutation_p.T114S|LPPR1_uc004bbc.2_Missense_Mutation_p.T138S|LPPR1_uc010mtc.2_Missense_Mutation_p.T122S	NM_207299	NP_997182	Q8TBJ4	LPPR1_HUMAN	plasticity related gene 3	138	Helical; (Potential).					integral to membrane	catalytic activity				0						ACTTTTTGCTACTGACATTTT	0.418000													13	92					0	0	0	0
OR1N1	138883	broad.mit.edu	37	9	125289435	125289435	+	Silent	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:125289435G>A	uc004bmn.1	-	1	138	c.138C>T	c.(136-138)GCC>GCT	p.A46A		NM_012363	NP_036495	Q8NGS0	OR1N1_HUMAN	olfactory receptor, family 1, subfamily N,	46	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)|breast(1)|skin(1)	3						CAGAGCCAATGGCCAGGATGA	0.502000													5	36					0	0	0	0
SURF2	6835	broad.mit.edu	37	9	136226921	136226921	+	Missense_Mutation	SNP	C	T	T			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:136226921C>T	uc004cdi.2	+	4	481	c.433C>T	c.(433-435)CGC>TGC	p.R145C		NM_017503	NP_059973	Q15527	SURF2_HUMAN	surfeit 2	145							protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.87e-07)|Epithelial(140;4.02e-06)|all cancers(34;3.71e-05)		TGACGGGCCTCGCCCGCGGGA	0.627000													4	15					0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139401405	139401405	+	Missense_Mutation	SNP	C	T	T	rs112900950		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr9:139401405C>T	uc004chz.2	-	23	3664	c.3664G>A	c.(3664-3666)GTG>ATG	p.V1222M	NOTCH1_uc004cia.1_Missense_Mutation_p.V452M	NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	1222	Extracellular (Potential).|EGF-like 32; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		CAGTCGTCCACGTTGATCTCA	0.672000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			4	13					0	0	0	0
DMD	1756	broad.mit.edu	37	X	32613911	32613911	+	Missense_Mutation	SNP	C	G	G			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chrX:32613911C>G	uc004dda.1	-	13	1809	c.1565G>C	c.(1564-1566)GGA>GCA	p.G522A	DMD_uc004dcz.2_Missense_Mutation_p.G399A|DMD_uc004dcy.1_Missense_Mutation_p.G518A|DMD_uc004ddb.1_Missense_Mutation_p.G514A|DMD_uc010ngo.1_Intron|DMD_uc004ddf.2_Missense_Mutation_p.G514A|DMD_uc010ngp.1_Intron|DMD_uc010ngq.1_Intron	NM_004006	NP_003997	P11532	DMD_HUMAN	dystrophin Dp427m isoform	522	Spectrin 2.		Missing (in BMD).		muscle filament sliding|peptide biosynthetic process	cell surface|costamere|cytoskeleton|cytosol|dystrophin-associated glycoprotein complex|sarcolemma	actin binding|dystroglycan binding|nitric-oxide synthase binding|protein binding|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(3)|pancreas(2)|large_intestine(1)	6		all_cancers(2;1.22e-16)|Acute lymphoblastic leukemia(2;4.65e-06)|all_hematologic(2;0.00108)|all_epithelial(3;0.00626)|all_neural(2;0.0189)|all_lung(315;0.182)|Glioma(3;0.203)				TGCGTGATCTCCACTAGATTC	0.353000													7	23					0	0	0	0
XIST	7503	broad.mit.edu	37	X	73066414	73066414	+	RNA	SNP	G	C	C			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chrX:73066414G>C	uc004ebm.1	-	1		c.6175C>G				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AAATGTCCAAGATGCATGCTT	0.473000													7	48					0	0	0	0
C1GALT1C1	29071	broad.mit.edu	37	X	119760090	119760090	+	Missense_Mutation	SNP	G	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chrX:119760090G>A	uc004esy.2	-	3	1279	c.932C>T	c.(931-933)CCT>CTT	p.P311L	C1GALT1C1_uc004esz.2_Missense_Mutation_p.P311L	NM_152692	NP_689905	Q96EU7	C1GLC_HUMAN	C1GALT1-specific chaperone 1	311	Lumenal (Potential).					integral to membrane					0						ACCATTTGGAGGTAAGAAAAC	0.378000													16	34					0	0	0	0
Unknown	0	broad.mit.edu	37	11	11158591	11158592	+	IGR	DEL	AG	-	-			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr11:11158591_11158592delAG								ZBED5 (278971 upstream) : GALNTL4 (133829 downstream)																							aaaaaaaaaaagaaaaaaaaat	0.153													---	---	---							
MBD6	114785	broad.mit.edu	37	12	57920022	57920022	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr12:57920022delC	uc001soj.1	+	6	1495	c.1271delC	c.(1270-1272)TCCfs	p.S424fs	MBD6_uc001sok.1_Frame_Shift_Del_p.S291fs|MBD6_uc001sol.1_5'Flank	NM_052897	NP_443129	Q96DN6	MBD6_HUMAN	methyl-CpG binding domain protein 6	424	Pro-rich.					chromosome|nucleus	chromatin binding|DNA binding			central_nervous_system(3)|ovary(1)	4						CCTGGCCCTTCCCACTCTGAT	0.627													---	---	---							
Unknown	0	broad.mit.edu	37	15	75544855	75544855	+	IGR	DEL	T	-	-	rs138336820		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr15:75544855delT								C15orf39 (40347 upstream) : GOLGA6C (6044 downstream)																							tttttttttcttttttttttt	0.214													---	---	---							
FAT1	2195	broad.mit.edu	37	4	187557335	187557336	+	Frame_Shift_Ins	INS	-	A	A			TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr4:187557335_187557336insA	uc003izf.2	-	6	4214_4215	c.4026_4027insT	c.(4024-4029)CATATTfs	p.H1342fs		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1342_1343	Extracellular (Potential).|Cadherin 11.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						ATCCATTCAATATGGAGTCTGG	0.436										HNSCC(5;0.00058)			---	---	---							
Unknown	0	broad.mit.edu	37	8	101908414	101908414	+	IGR	DEL	A	-	-	rs112706717		TCGA-CN-6016-01A-11D-1683-08	TCGA-CN-6016-10A-01D-1683-08									Somatic	Phase_I	Capture				Illumina GAIIx	fcb6e29c-864d-483f-a848-8a61202d9516	06bd7b3a-430d-4d4f-8846-e7997440d241	g.chr8:101908414delA								PABPC1 (174099 upstream) : YWHAZ (22390 downstream)																							AATTGTACTTAAAAAAAAAAA	0.438													---	---	---							
