Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PLEKHN1	84069	genome.wustl.edu	37	1	909265	909265	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032129.2	+1	validated	p.P496L	0.280	39	0%	26	23.1%	8	62.5%	possibly_damaging(0.894)	tolerated(0.25)	neutral(0.389)	NULL
ARHGEF16	27237	genome.wustl.edu	37	1	3379836	3379836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014448.3	+1	reviewed	p.P63L	0.000	30	0%	25	28%	19	63.1%	benign(0.003)	deleterious(0.01)	neutral(0.406)	NULL
RPL22	6146	ucsc.edu	37	1	6257785	6257785	+	Frame_Shift_Del	DEL	T	-	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000983.3	-1	reviewed	p.K15fs	1	-	-	-	-	-	-	-	-	-	HMMPfam_Ribosomal_L22e
MTOR	2475	genome.wustl.edu	37	1	11273543	11273543	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004958.3	-1	reviewed	p.E1066D	0.976	108	0%	141	32.6%	9	44.4%	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	superfamily_ARM-type_fold
PTCHD2	57540	genome.wustl.edu	37	1	11594485	11594485	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000304391	+1	known	p.A28T	1.000	146	0%	146	32.2%	1	0%	unknown(0)	-	-	NULL
KIAA2013	90231	genome.wustl.edu	37	1	11983474	11983474	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_138346.1	-1	provisional	p.M369T	1.000	124	0%	109	33%	119	36.9%	benign(0.269)	tolerated(0.09)	neutral(0.325)	HMMPfam_DUF2152
SPEN	23013	genome.wustl.edu	37	1	16258764	16258764	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015001.2	+1	reviewed	p.R2010H	0.047	32	0%	18	22.2%	5	0%	possibly_damaging(0.574)	tolerated(0.08)	deleterious(0.497)	NULL
ZBTB17	7709	genome.wustl.edu	37	1	16271569	16271569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003443.2	-1	validated	p.E264K	1.000	232	0%	288	34.7%	18	27.7%	possibly_damaging(0.942)	deleterious(0.05)	deleterious(0.732)	NULL
AKR7A2	8574	genome.wustl.edu	37	1	19632595	19632595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003689.2	-1	validated	p.A279T	1.000	124	0%	115	34.8%	144	37.5%	probably_damaging(0.997)	tolerated(0.11)	deleterious(0.738)	superfamily_Aldo/ket_red
EIF4G3	8672	genome.wustl.edu	37	1	21137239	21137239	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003760.3	-1	validated	p.Q1523R	1.000	215	0%	276	29.3%	72	45.8%	possibly_damaging(0.511)	deleterious(0.03)	deleterious(0.536)	HMMPfam_W2,HMMSmart_SM00515,superfamily_ARM repeat
ECE1	1889	genome.wustl.edu	37	1	21586832	21586832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001397.2	-1	reviewed	p.R183C	1.000	353	0%	279	28.3%	52	19.2%	benign(0.117)	deleterious(0.05)	neutral(0.355)	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
ECE1	1889	genome.wustl.edu	37	1	21605779	21605779	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001397.2	-1	reviewed	p.R62Q	0.993	120	0%	91	14.3%	31	6.4%	possibly_damaging(0.859)	deleterious(0.03)	deleterious(0.697)	NULL
IL28RA	163702	genome.wustl.edu	37	1	24495946	24495946	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_170743.2	-1	reviewed	p.P110T	0.396	137	0%	106	20.8%	0	-	benign(0.163)	deleterious(0.04)	neutral(0.363)	superfamily_Fibronectin type III
RUNX3	864	genome.wustl.edu	37	1	25256086	25256086	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001031680.2	-1	reviewed	p.A106S	1.000	23	0%	24	62.5%	1	0%	possibly_damaging(0.497)	deleterious(0.01)	deleterious(0.572)	superfamily_p53-like transcription factors,HMMPfam_Runt
MAN1C1	57134	genome.wustl.edu	37	1	26107499	26107499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020379.2	+1	validated	p.E516K	1.000	64	0%	49	38.8%	8	0%	benign(0.132)	deleterious(0.04)	neutral(0.360)	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47
ARID1A	8289	genome.wustl.edu	37	1	27106245	27106245	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006015.4	+1	reviewed	p.K1953fs	1.000	-	-	-	-	-	-	-	-	-	NULL
SFN	2810	genome.wustl.edu	37	1	27189997	27189997	+	Silent	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006142.3	+1	validated	p.T98	0.020	71	0%	84	31%	110	40%	-	-	-	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein
ZMYM4	9202	genome.wustl.edu	37	1	35827384	35827384	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000457946	+1	known	p.C27R	1.000	228	0%	331	30.5%	6	50%	-	-	-	NULL
TEKT2	27285	genome.wustl.edu	37	1	36552435	36552435	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014466.2	+1	reviewed	p.R207C	0.990	183	0%	150	31.3%	194	48.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Tektin
ADPRHL2	54936	genome.wustl.edu	37	1	36557321	36557321	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017825.2	+1	reviewed	p.E137	1.000	183	0%	139	10.8%	37	0%	-	-	-	HMMPfam_ADP_ribosyl_GH,superfamily_Ribosyl_crysJ1
IPO13	9670	genome.wustl.edu	37	1	44421995	44421995	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014652.3	+1	reviewed	p.Y275	0.672	125	0%	153	32%	15	26.6%	-	-	-	superfamily_ARM-type_fold
PTCH2	8643	genome.wustl.edu	37	1	45288829	45288829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003738.4	-1	reviewed	p.A1090V	1.000	110	0%	142	33.1%	5	0%	benign(0.001)	tolerated(0.5)	neutral(0.010)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
TESK2	10420	genome.wustl.edu	37	1	45810729	45810729	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_007170.2	-1	reviewed	p.R500L	0.999	175	0%	268	28.4%	3	66.6%	benign(0.267)	tolerated(0.11)	neutral(0.300)	NULL
EPS15	2060	genome.wustl.edu	37	1	51873966	51873966	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001981.2	-1	reviewed	p.S438	0.006	450	0%	479	36.5%	9	22.2%	-	-	-	NULL
FAM159A	348378	genome.wustl.edu	37	1	53108542	53108542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001042693.1	+1	validated	p.A64T	0.998	352	0%	390	26.4%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
L1TD1	54596	genome.wustl.edu	37	1	62675692	62675694	+	In_Frame_Del	DEL	GAA	GAA	-	rs137939193	byCluster;by1000genomes	TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_019079.4	+1	validated	p.E419in_frame_del	0.016:0.007:0.000	-	-	-	-	-	-	-	-	-	NULL
FPGT	8790	genome.wustl.edu	37	1	74665362	74665362	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003838.2	+1	reviewed	p.R33C	0.931	340	0%	439	27.8%	5	0%	probably_damaging(0.991)	tolerated(0.08)	deleterious(0.744)	NULL
IFI44L	10964	genome.wustl.edu	37	1	79093741	79093741	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006820.2	+1	validated	p.Q47H	0.900	210	0%	268	25.7%	5	20%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
RNPC3	55599	genome.wustl.edu	37	1	104076415	104076415	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017619.3	+1	reviewed	p.F99I	1.000	300	0%	363	29.5%	2	0%	possibly_damaging(0.712)	deleterious(0.02)	deleterious(0.641)	superfamily_SSF54928
LOC100129138	100129138	genome.wustl.edu	37	1	104615785	104615785	+	RNA	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	XR_036957.2	+1	model	NULL	0.006	54	0%	38	44.7%	1	0%	-	-	-	-
KCNC4	3749	genome.wustl.edu	37	1	110774881	110774881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004978.3	+1	reviewed	p.P620S	0.027	178	0%	162	32.7%	4	25%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
KCND3	3752	genome.wustl.edu	37	1	112524667	112524669	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004980.3	-1	reviewed	p.F227in_frame_del	1.000:0.998:1.000	-	-	-	-	-	-	-	-	-	superfamily_Voltage-gated potassium channels
WNT2B	7482	genome.wustl.edu	37	1	113052049	113052049	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024494.2	+1	reviewed	p.R55	0.983	42	0%	21	19%	2	0%	-	-	-	NULL
PDE4DIP	9659	genome.wustl.edu	37	1	144867984	144867984	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014644.4	-1	validated	p.G1819W	1.000	568	0%	527	15.4%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TCHH	7062	genome.wustl.edu	37	1	152085445	152085445	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_007113.2	-1	provisional	p.Q83R	1.000	249	0%	204	17.2%	0	-	probably_damaging(0.962)	-	-	superfamily_SSF47473
HRNR	388697	genome.wustl.edu	37	1	152191382	152191382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001009931.1	-1	validated	p.R908Q	0.000	146	0%	195	30.8%	0	-	unknown(0)	-	-	NULL
INTS3	65123	genome.wustl.edu	37	1	153745128	153745128	+	Silent	SNP	G	G	A	rs6663011	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_023015.3	+1	validated	p.T945	0.955	116	0%	98	34.7%	83	49.3%	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155452086	155452086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018489.2	-1	reviewed	p.T192M	0.999	279	0%	370	31.4%	0	-	benign(0.01)	tolerated(0.09)	neutral(0.297)	NULL
GON4L	54856	genome.wustl.edu	37	1	155735399	155735399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001037533.1	-1	validated	p.R1289C	0.200	249	0%	304	35.9%	8	50%	possibly_damaging(0.783)	deleterious(0)	deleterious(0.738)	NULL
ETV3L	440695	genome.wustl.edu	37	1	157069064	157069064	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001004341.2	-1	validated	p.R55	1.000	195	0%	198	29.3%	2	0%	-	-	-	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785
ETV3	2117	genome.wustl.edu	37	1	157103900	157103900	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005240.1	-1	validated	p.K135T	1.000	534	0%	595	32.1%	1	100%	benign(0)	tolerated(0.78)	neutral(0.001)	superfamily_SSF46785
OR6K2	81448	genome.wustl.edu	37	1	158669691	158669691	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001005279.1	-1	provisional	p.L251R	0.009	257	0%	321	37.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C1orf111	284680	genome.wustl.edu	37	1	162344068	162344068	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_182581.3	-1	validated	p.V186M	0.022	88	0%	80	37.5%	1	0%	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
CFHR2	3080	genome.wustl.edu	37	1	196920147	196920147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005666.2	+1	validated	p.C140Y	0.053	228	0.4%	315	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
LHX9	56956	genome.wustl.edu	37	1	197890498	197890498	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020204.2	+1	reviewed	p.R148C	1.000	65	0%	48	10.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
SLC26A9	115019	genome.wustl.edu	37	1	205901027	205901027	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_134325.2	-1	reviewed	p.H171	0.967	83	0%	89	27%	1	0%	-	-	-	NULL
DTL	51514	genome.wustl.edu	37	1	212273891	212273891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016448.2	+1	validated	p.S520L	0.445	167	0%	187	28.9%	7	28.5%	possibly_damaging(0.918)	deleterious(0.02)	deleterious(0.752)	NULL
ANGEL2	90806	genome.wustl.edu	37	1	213180442	213180444	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	AAA	AAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000310246	-1	known	p.F226in_frame_del	0.007:0.006:0.011	-	-	-	-	-	-	-	-	-	HMMPfam_Exo_endo_phos
OBSCN	84033	genome.wustl.edu	37	1	228403423	228403423	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001098623.1	+1	reviewed	p.R663H	0.075	33	0%	35	11.4%	1	0%	probably_damaging(0.991)	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
AGT	183	genome.wustl.edu	37	1	230839047	230839047	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000029.3	-1	reviewed	p.E433A	0.945	201	0%	227	36.6%	1	100%	benign(0.004)	tolerated(0.39)	neutral(0.016)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
GNPAT	8443	genome.wustl.edu	37	1	231401831	231401831	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014236.3	+1	reviewed	p.I282F	1.000	348	0%	477	34.2%	34	47%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Acyltransferase,HMMSmart_PlsC,superfamily_SSF69593
SLC35F3	148641	genome.wustl.edu	37	1	234041319	234041319	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173508.2	+1	provisional	p.D33G	1.000	33	0%	27	18.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
B3GALNT2	148789	genome.wustl.edu	37	1	235658047	235658047	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_152490.2	-1	validated	p.N68	0.953	332	0%	348	31.3%	5	20%	-	-	-	NULL
FMN2	56776	genome.wustl.edu	37	1	240256677	240256677	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020066.4	+1	validated	p.R424fs	1.000	-	-	-	-	-	-	-	-	-	NULL
MAP1LC3C	440738	genome.wustl.edu	37	1	242161826	242161826	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001004343.2	-1	validated	p.S71G	0.919	64	0%	52	40.4%	0	-	benign(0)	tolerated(0.13)	neutral(0.253)	HMMPfam_MAP1_LC3,superfamily_SSF54236
OR2M3	127062	genome.wustl.edu	37	1	248367072	248367072	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001004689.1	+1	provisional	p.R235C	0.000	400	0%	538	29.6%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GRHL1	29841	genome.wustl.edu	37	2	10136032	10136032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_198182.2	+1	reviewed	p.G320S	0.001	228	0.4%	416	26.9%	16	25%	benign(0)	tolerated(0.54)	neutral(0.007)	NULL
KLF11	8462	genome.wustl.edu	37	2	10187922	10187922	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003597.4	+1	reviewed	p.A153V	0.000	98	0%	96	22.9%	8	0%	benign(0)	tolerated(0.76)	neutral(0.001)	NULL
NBAS	51594	genome.wustl.edu	37	2	15330431	15330431	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000442506	-1	known	p.W1224*	0.128	410	0%	548	20.6%	77	25.9%	benign(0.134)	tolerated(0.85)	neutral(0.012)	NULL
NBAS	51594	genome.wustl.edu	37	2	15608548	15608548	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015909.2	-1	validated	p.L612P	1.000	368	0%	560	35.7%	5	20%	unknown(0)	deleterious(0.01)	-	NULL
ADCY3	109	genome.wustl.edu	37	2	25046099	25046099	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004036.3	-1	reviewed	p.E954D	1.000	121	0%	194	25.3%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
OTOF	9381	genome.wustl.edu	37	2	26705445	26705445	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_194248.2	-1	reviewed	p.Q470*	1.000	85	0%	107	18.7%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CAD	790	genome.wustl.edu	37	2	27464041	27464041	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000456311	+1	known	p.A223T	1.000	119	0%	171	23.4%	38	23.6%	-	-	-	superfamily_Aspartate/ornithine carbamoyltransferase
XDH	7498	genome.wustl.edu	37	2	31609394	31609394	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000379.3	-1	reviewed	p.L227	1.000	190	0%	234	20.9%	0	-	-	-	-	superfamily_FAD-binding_2
SRD5A2	6716	genome.wustl.edu	37	2	31805778	31805778	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000233139	-1	known	p.A64T	0.993	12	0%	24	41.7%	0	-	-	-	-	NULL
LRPPRC	10128	genome.wustl.edu	37	2	44175302	44175302	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_133259.3	-1	reviewed	p.R627C	1.000	378	0.3%	674	15%	18	0%	benign(0.035)	tolerated(0.11)	neutral(0.274)	NULL
TTC7A	57217	genome.wustl.edu	37	2	47288073	47288073	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020458.2	+1	validated	p.T773M	0.994	51	0%	66	31.8%	50	32%	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like
C2orf61	285051	genome.wustl.edu	37	2	47314163	47314163	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000449846	-1	known	p.I124F	0.940	580	0%	994	16.6%	0	-	unknown(0)	-	-	NULL
ERLEC1	27248	genome.wustl.edu	37	2	54024698	54024698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015701.3	+1	validated	p.R132Q	1.000	337	0%	461	18.4%	44	18.1%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_PRKCSH
PRADC1	84279	genome.wustl.edu	37	2	73455586	73455586	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032319.1	-1	provisional	p.W188L	1.000	165	0%	253	49.8%	45	51.1%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	superfamily_Transferrin receptor ectodomain apical domain
SEMA4F	10505	genome.wustl.edu	37	2	74901710	74901710	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004263.3	+1	provisional	p.G303D	1.000	267	0%	317	54.9%	2	0%	benign(0.183)	tolerated(0.28)	neutral(0.049)	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
SEMA4F	10505	genome.wustl.edu	37	2	74902418	74902418	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004263.3	+1	provisional	p.L427	1.000	132	0%	200	27%	4	25%	-	-	-	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain
ANKRD36BP2	645784	genome.wustl.edu	37	2	89084340	89084340	+	RNA	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NR_015424.1	+1	predicted	NULL	0.030	81	0%	182	52.2%	0	-	-	-	-	-
SNRNP200	23020	genome.wustl.edu	37	2	96970473	96970473	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014014.3	-1	reviewed	p.K60I	1.000	247	0%	317	17%	28	17.8%	possibly_damaging(0.928)	deleterious(0.01)	deleterious(0.781)	NULL
CNNM4	26504	genome.wustl.edu	37	2	97474316	97474316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020184.3	+1	reviewed	p.P656L	0.301	185	0%	270	29.6%	13	15.3%	benign(0.003)	tolerated(0.08)	neutral(0.300)	HMMSmart_cNMP
CNNM4	26504	genome.wustl.edu	37	2	97474387	97474387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020184.3	+1	reviewed	p.A680T	0.037	222	0%	330	47%	10	70%	benign(0.006)	tolerated(0.11)	neutral(0.272)	HMMSmart_cNMP
MFSD9	84804	genome.wustl.edu	37	2	103353082	103353082	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000421966	-1	known	p.G63V	0.002	48	0%	36	19.4%	1	0%	unknown(0)	-	-	NULL
RGPD4	285190	genome.wustl.edu	37	2	108460042	108460042	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_182588.2	+1	validated	p.E213G	0.994	724	0%	1078	6.1%	0	-	possibly_damaging(0.85)	tolerated(0.1)	deleterious(0.613)	superfamily_SSF48452
POTEF	728378	genome.wustl.edu	37	2	130877731	130877731	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001099771.2	-1	validated	p.W120R	0.000	169	0%	193	41.5%	0	-	benign(0.014)	deleterious(0.01)	neutral(0.406)	superfamily_ANK
LRP1B	53353	genome.wustl.edu	37	2	141298572	141298572	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018557.2	-1	validated	p.R2495*	0.981	414	0%	606	44.6%	0	-	-	-	-	HMMSmart_EGF,superfamily_SSF63825
DAPL1	92196	genome.wustl.edu	37	2	159718937	159718937	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000343761	+1	known	p.T81M	0.012	25	0%	44	31.8%	1	0%	benign(0.022)	deleterious(0.01)	neutral(0.407)	NULL
TANK	10010	genome.wustl.edu	37	2	162088035	162088035	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004180.2	+1	reviewed	p.P358	0.998	42	0%	107	45.8%	91	58.2%	-	-	-	NULL
COBLL1	22837	genome.wustl.edu	37	2	165557176	165557176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014900.3	-1	validated	p.P478L	0.067	382	0%	585	42.7%	2	0%	benign(0)	tolerated(0.53)	neutral(0.007)	NULL
SCN2A	6326	genome.wustl.edu	37	2	166165261	166165261	+	Missense_Mutation	SNP	C	C	T	rs121917748		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001040142.1	+1	reviewed	p.R188W	0.998	479	0.2%	751	25.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SP3	6670	genome.wustl.edu	37	2	174820868	174820868	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000416195	-1	known	p.V81A	1.000	193	0%	236	25.4%	16	37.5%	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179422066	179422066	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000356127	-1	known	p.Y26738C	1.000	474	0%	795	50.1%	0	-	probably_damaging(1)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179576811	179576811	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000356127	-1	known	p.T8005M	0.038	108	0%	118	25.4%	0	-	unknown(0)	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179643691	179643691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_133379.3	-1	reviewed	p.A1373V	1.000	204	0%	241	25.3%	0	-	possibly_damaging(0.741)	-	-	HMMPfam_I-set,superfamily_SSF48726
COL5A2	1290	genome.wustl.edu	37	2	189943268	189943269	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000393.3	-1	reviewed	p.G345fs	1.000:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_Collagen
CASP10	843	genome.wustl.edu	37	2	202050825	202050825	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032977.3	+1	reviewed	p.R109*	0.000	76	0%	85	31.8%	4	0%	-	-	-	superfamily_DEATH_like
ALS2	57679	genome.wustl.edu	37	2	202625903	202625903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020919.3	-1	reviewed	p.A272T	0.986	450	0%	684	22.2%	20	25%	possibly_damaging(0.575)	deleterious(0.02)	deleterious(0.580)	NULL
NRP2	8828	genome.wustl.edu	37	2	206562437	206562437	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_201266.1	+1	reviewed	p.H81	0.956	136	0%	276	41.7%	18	22.2%	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
SMARCAL1	50485	genome.wustl.edu	37	2	217340071	217340071	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001127207.1	+1	reviewed	p.E775G	0.082	97	0%	116	44.8%	28	28.5%	benign(0.008)	tolerated(0.17)	neutral(0.059)	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540
VIL1	7429	genome.wustl.edu	37	2	219292995	219292995	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_007127.2	+1	reviewed	p.L168M	1.000	185	0%	344	45.1%	4	75%	probably_damaging(0.98)	deleterious(0.03)	deleterious(0.788)	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753
STK36	27148	genome.wustl.edu	37	2	219559337	219559337	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000431040	+1	known	p.M24T	1.000	89	0%	146	43.8%	30	40%	-	-	-	NULL
DOCK10	55619	genome.wustl.edu	37	2	225651773	225651773	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014689.2	-1	validated	p.F1874S	1.000	224	0%	279	18.6%	3	0%	benign(0.023)	deleterious(0)	neutral(0.446)	NULL
DNER	92737	genome.wustl.edu	37	2	230231608	230231608	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_139072.3	-1	validated	p.A695T	1.000	49	0%	100	43%	0	-	possibly_damaging(0.905)	deleterious(0)	deleterious(0.804)	NULL
SH3BP4	23677	genome.wustl.edu	37	2	235951774	235951774	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014521.2	+1	reviewed	p.C787	1.000	34	0%	35	28.6%	36	38.8%	-	-	-	NULL
D2HGDH	728294	genome.wustl.edu	37	2	242689645	242689645	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000432449	+1	known	p.V65I	1.000	92	0%	140	49.3%	29	68.9%	-	-	-	HMMPfam_FAD-oxidase_C,superfamily_FAD-linked oxidases C-terminal domain
ITPR1	3708	genome.wustl.edu	37	3	4825556	4825556	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001099952.2	+1	reviewed	p.D2141	0.055	349	0%	384	27.3%	15	0%	-	-	-	NULL
RPUSD3	285367	genome.wustl.edu	37	3	9879839	9879839	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173659.3	-1	validated	p.A306V	0.934	110	0%	131	31.3%	52	30.7%	benign(0.065)	tolerated(0.34)	neutral(0.028)	superfamily_Pseudouridine synthase
ACVR2B	93	genome.wustl.edu	37	3	38518825	38518825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001106.3	+1	reviewed	p.A34T	1.000	82	0%	73	28.8%	9	55.5%	benign(0.001)	tolerated(0.55)	neutral(0.007)	HMMPfam_Activin_recp,superfamily_Snake toxin-like
SCN10A	6336	genome.wustl.edu	37	3	38753770	38753770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006514.2	-1	validated	p.S1324L	0.000	239	0%	252	27%	0	-	benign(0.005)	deleterious(0.02)	neutral(0.383)	HMMPfam_Ion_trans,superfamily_SSF81324
FYCO1	79443	genome.wustl.edu	37	3	46016789	46016789	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024513.2	-1	validated	p.V113L	1.000	229	0%	293	32.4%	8	12.5%	benign(0.098)	deleterious(0.03)	neutral(0.372)	NULL
NBEAL2	23218	genome.wustl.edu	37	3	47037248	47037248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015175.1	+1	validated	p.A648V	0.019	212	0.9%	200	33.5%	7	57.1%	possibly_damaging(0.633)	tolerated(0.67)	neutral(0.224)	NULL
CCDC51	79714	genome.wustl.edu	37	3	48475152	48475152	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024661.3	-1	validated	p.L148	1.000	129	0%	127	29.9%	17	35.2%	-	-	-	NULL
GRM2	2912	genome.wustl.edu	37	3	51743246	51743246	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000839.3	+1	reviewed	p.R83C	1.000	52	0%	51	19.6%	0	-	possibly_damaging(0.66)	deleterious(0)	deleterious(0.677)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
DNAH1	25981	genome.wustl.edu	37	3	52382985	52382985	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015512.4	+1	validated	p.R730W	0.922	69	0%	93	30.1%	2	50%	benign(0.145)	tolerated(0.06)	neutral(0.335)	NULL
IL17RD	54756	genome.wustl.edu	37	3	57132318	57132318	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017563.3	-1	validated	p.A471	0.244	79	0%	69	37.7%	4	0%	-	-	-	HMMPfam_SEFIR
ROBO1	6091	genome.wustl.edu	37	3	78700896	78700896	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002941.3	-1	reviewed	p.A933V	1.000	145	0%	146	30.1%	6	0%	benign(0.109)	deleterious(0)	neutral(0.453)	NULL
MYLK	4638	genome.wustl.edu	37	3	123419554	123419554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_053025.3	-1	reviewed	p.E921K	0.993	129	0%	131	35.9%	43	6.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MME	4311	genome.wustl.edu	37	3	154834290	154834290	+	Silent	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000902.3	+1	reviewed	p.T127	0.000	283	0%	387	27.9%	2	0%	-	-	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
RSRC1	51319	genome.wustl.edu	37	3	158178785	158178785	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000482822	+1	known	p.G109*	0.993	314	0%	482	29.5%	19	36.8%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
ZBBX	79740	genome.wustl.edu	37	3	167023446	167023446	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024687.2	-1	validated	p.T570	0.003	202	0%	161	27.3%	28	60.7%	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936095	178936095	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006218.2	+1	reviewed	p.Q546R	1.000	250	0%	289	31.8%	4	25%	probably_damaging(0.998)	deleterious(0.05)	deleterious(0.820)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
DVL3	1857	genome.wustl.edu	37	3	183885816	183885816	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004423.3	+1	reviewed	p.S487	0.062	214	0%	188	33%	96	40.6%	-	-	-	HMMPfam_DEP,HMMSmart_DEP,superfamily_SSF46785
LRRC15	131578	genome.wustl.edu	37	3	194080772	194080772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001135057.2	-1	validated	p.P340L	0.792	109	0%	83	33.7%	0	-	possibly_damaging(0.896)	deleterious(0.04)	deleterious(0.702)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
LRRC33	375387	genome.wustl.edu	37	3	196388277	196388277	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_198565.1	+1	provisional	p.T588I	0.085	100	0%	58	29.3%	3	0%	benign(0.282)	deleterious(0.03)	neutral(0.451)	superfamily_SSF52058
FGFRL1	53834	genome.wustl.edu	37	4	1018978	1018978	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001004356.2	+1	reviewed	p.P453L	0.009	18	0%	15	53.3%	7	28.5%	benign(0)	tolerated(0.75)	neutral(0.002)	NULL
SLBP	7884	genome.wustl.edu	37	4	1705398	1705398	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006527.2	-1	reviewed	p.R69H	0.523	431	0%	532	36.1%	27	29.6%	benign(0.099)	tolerated(0.25)	neutral(0.044)	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8228830	8228830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018986.3	+1	validated	p.A470V	0.000	34	0%	26	26.9%	1	0%	benign(0.042)	tolerated(0.28)	neutral(0.034)	NULL
KLF3	51274	genome.wustl.edu	37	4	38691425	38691425	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016531.5	+1	validated	p.R207M	1.000	266	0%	302	36.4%	20	10%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	NULL
LOC441016	441016	genome.wustl.edu	37	4	54442357	54442357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	XM_496693.4	+1	model	p.D209Y	0.273	19	0%	13	30.8%	0	-	-	-	-	HMMPfam_HCaRG
CLOCK	9575	genome.wustl.edu	37	4	56345859	56345859	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004898.2	-1	reviewed	p.S19G	0.999	561	0%	792	29.2%	0	-	benign(0)	tolerated(0.94)	-	NULL
LPHN3	23284	genome.wustl.edu	37	4	62845457	62845457	+	Silent	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000502815	+1	known	p.L384V	1.000	178	0%	140	22.1%	0	-	-	-	-	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
UGT2B15	7366	genome.wustl.edu	37	4	69536171	69536171	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001076.2	-1	validated	p.L56	0.817	177	0%	333	28.5%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SEC31A	22872	genome.wustl.edu	37	4	83788367	83788367	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001077207.1	-1	reviewed	p.S329G	1.000	282	0%	399	28.8%	28	0%	benign(0.147)	deleterious(0.02)	neutral(0.396)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
MEPE	56955	genome.wustl.edu	37	4	88766590	88766590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020203.3	+1	validated	p.H190Q	0.000	141	0%	169	36.1%	0	-	possibly_damaging(0.574)	tolerated(0.31)	neutral(0.224)	HMMPfam_Osteoregulin
PKD2	5311	genome.wustl.edu	37	4	88967960	88967960	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000297.2	+1	reviewed	p.R496C	1.000	512	0%	636	27.2%	10	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_PKD_channel,superfamily_SSF81324
DAPP1	27071	genome.wustl.edu	37	4	100756887	100756888	+	Frame_Shift_Ins	INS	-	-	CT	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014395.2	+1	validated	p.S74fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
EXOSC9	5393	genome.wustl.edu	37	4	122731125	122731126	+	Frame_Shift_Del	DEL	AT	AT	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001034194.1	+1	validated	p.Y204fs	0.451:0.982	-	-	-	-	-	-	-	-	-	HMMPfam_RNase_PH_C,superfamily_3_ExoRNase
INPP4B	8821	genome.wustl.edu	37	4	143129594	143129594	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001101669.1	-1	reviewed	p.H352	0.911	437	0%	445	35.7%	1	0%	-	-	-	NULL
FSTL5	56884	genome.wustl.edu	37	4	162841740	162841740	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020116.3	-1	validated	p.H75	1.000	189	0%	187	34.8%	0	-	-	-	-	superfamily_SSF100895
KLHL2	11275	genome.wustl.edu	37	4	166150052	166150052	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000421009	+1	known	p.M26T	0.988	399	0%	474	23.2%	6	50%	benign(0)	tolerated(0.08)	neutral(0.300)	NULL
MTNR1A	4543	genome.wustl.edu	37	4	187455454	187455454	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005958.3	-1	reviewed	p.V148M	0.317	194	0.5%	214	26.2%	0	-	probably_damaging(0.962)	tolerated(0.19)	neutral(0.455)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAT1	2195	genome.wustl.edu	37	4	187629099	187629099	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005245.3	-1	reviewed	p.R628Q	1.000	178	0%	165	26.7%	1	0%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
BRD9	65980	genome.wustl.edu	37	5	876276	876276	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_023924.4	-1	validated	p.D345	0.804	149	0%	125	24%	25	36%	-	-	-	NULL
SLC6A19	340024	genome.wustl.edu	37	5	1222001	1222001	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001003841.2	+1	reviewed	p.N629	0.672	106	0%	125	35.2%	0	-	-	-	-	HMMPfam_SNF
C5orf38	153571	genome.wustl.edu	37	5	2752497	2752497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_178569.2	+1	provisional	p.R40H	0.819	20	0%	22	27.3%	0	-	unknown(0)	-	-	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5303391	5303391	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_139056.2	+1	reviewed	p.G934R	0.997	56	0%	33	42.4%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
ANKH	56172	genome.wustl.edu	37	5	14716827	14716827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_054027.4	-1	reviewed	p.F377L	1.000	194	0%	289	27.7%	15	0%	possibly_damaging(0.882)	tolerated(0.93)	neutral(0.344)	NULL
PDZD2	23037	genome.wustl.edu	37	5	32087481	32087481	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_178140.2	+1	reviewed	p.S1309	0.001	51	0%	74	32.4%	1	0%	-	-	-	NULL
CCDC125	202243	genome.wustl.edu	37	5	68595926	68595926	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_176816.3	-1	validated	p.L243	0.648	361	0%	425	29.9%	8	100%	-	-	-	NULL
PAPD4	167153	genome.wustl.edu	37	5	78981027	78981027	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001114393.1	+1	validated	p.W462*	1.000	278	0%	304	30.6%	17	17.6%	-	-	-	superfamily_PAP/OAS1 substrate-binding domain
PCSK1	5122	genome.wustl.edu	37	5	95768621	95768621	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000439.4	-1	reviewed	p.G42	0.150	133	0%	116	29.3%	0	-	-	-	-	superfamily_Prot_inh_propept
FBN2	2201	genome.wustl.edu	37	5	127710322	127710323	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001999.3	-1	reviewed	p.D699fs	0.309:1.000	-	-	-	-	-	-	-	-	-	superfamily_TB module/8-cys domain,superfamily_Concanavalin A-like lectins/glucanases,superfamily_EGF/Laminin
TGFBI	7045	genome.wustl.edu	37	5	135391469	135391469	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000358.2	+1	reviewed	p.T504N	1.000	113	0%	98	22.4%	69	0%	benign(0.011)	tolerated(0.11)	neutral(0.272)	superfamily_FAS1 domain
FAM13B	51306	genome.wustl.edu	37	5	137342768	137342768	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016603.2	-1	validated	p.E253D	0.023	667	0%	827	25.3%	3	33.3%	benign(0)	tolerated(0.95)	-	NULL
FAM53C	51307	genome.wustl.edu	37	5	137682562	137682562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001135647.1	+1	validated	p.R365W	0.921	69	0%	100	19%	8	37.5%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
KDM3B	51780	genome.wustl.edu	37	5	137763761	137763761	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016604.3	+1	validated	p.G1580V	1.000	495	0%	653	28.8%	63	36.5%	benign(0.408)	tolerated(0.27)	neutral(0.166)	HMMSmart_SM00558,superfamily_Clavaminate synthase-like
HSPA9	3313	genome.wustl.edu	37	5	137892255	137892255	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004134.6	-1	reviewed	p.S616	1.000	294	0%	304	29.6%	149	41.6%	unknown(0)	-	-	HMMPfam_HSP70
MZB1	51237	genome.wustl.edu	37	5	138725493	138725493	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016459.3	-1	validated	p.P18fs	0.628	-	-	-	-	-	-	-	-	-	NULL
PCDHA4	56144	genome.wustl.edu	37	5	140187491	140187491	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018907.2	+1	reviewed	p.P240Q	1.000	92	0%	116	22.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHA5	56143	genome.wustl.edu	37	5	140201623	140201623	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018908.2	+1	reviewed	p.R88Q	0.945	116	0%	114	26.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like
PCDHA11	56138	genome.wustl.edu	37	5	140250356	140250356	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018902.3	+1	reviewed	p.D556	0.982	63	0%	31	45.2%	0	-	-	-	-	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB7	56129	genome.wustl.edu	37	5	140553098	140553098	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018940.2	+1	reviewed	p.V228M	0.037	100	0%	87	42.5%	3	0%	possibly_damaging(0.864)	deleterious(0)	deleterious(0.779)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHB15	56121	genome.wustl.edu	37	5	140627399	140627399	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018935.2	+1	reviewed	p.Y751	0.978	145	0%	176	28.4%	3	0%	-	-	-	NULL
PCDHGA3	56112	genome.wustl.edu	37	5	140725565	140725565	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018916.3	+1	reviewed	p.S655	0.018	63	0%	44	15.9%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
SYNPO	11346	genome.wustl.edu	37	5	149998219	149998219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000314840	+1	known	p.A97V	0.000	52	0%	48	22.9%	0	-	benign(0)	tolerated(0.26)	neutral(0.034)	NULL
TIMD4	91937	genome.wustl.edu	37	5	156349116	156349116	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_138379.2	-1	validated	p.L336	0.230	301	0%	373	25.2%	0	-	-	-	-	NULL
C1QTNF2	114898	genome.wustl.edu	37	5	159776715	159776715	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_031908.4	-1	validated	p.G151	0.962	33	0%	29	24.1%	1	0%	-	-	-	HMMPfam_Collagen
ODZ2	57451	genome.wustl.edu	37	5	167689338	167689338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001122679.1	+1	inferred	p.K2607N	1.000	53	0%	40	15%	0	-	possibly_damaging(0.846)	tolerated(0.05)	deleterious(0.670)	NULL
SLIT3	6586	genome.wustl.edu	37	5	168180912	168180912	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003062.2	-1	validated	p.V596M	0.581	109	0.9%	103	12.6%	11	18.1%	benign(0.002)	tolerated(0.1)	neutral(0.286)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_RNI-like
DOCK2	1794	genome.wustl.edu	37	5	169506138	169506138	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004946.2	+1	validated	p.S1718	0.813	106	0%	153	41.2%	11	0%	-	-	-	NULL
UIMC1	51720	genome.wustl.edu	37	5	176335628	176335628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016290.3	-1	provisional	p.C582R	1.000	203	0%	249	25.3%	27	48.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SLC34A1	6569	genome.wustl.edu	37	5	176825050	176825050	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003052.4	+1	reviewed	p.L561	1.000	109	0%	109	38.5%	0	-	-	-	-	NULL
ADAMTS2	9509	genome.wustl.edu	37	5	178559304	178559304	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014244.2	-1	reviewed	p.I739	0.995	222	0.5%	238	33.2%	11	0%	-	-	-	HMMPfam_ADAM_spacer1
RUFY1	80230	genome.wustl.edu	37	5	179036467	179036467	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_025158.3	+1	validated	p.C692S	1.000	29	0%	28	14.3%	68	8.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FYVE,HMMSmart_SM00064,superfamily_FYVE/PHD zinc finger
IRF4	3662	genome.wustl.edu	37	6	394897	394897	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002460.2	+1	validated	p.R98L	0.998	84	0%	87	29.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_IRF,HMMSmart_SM00348,superfamily_""Winged helix"" DNA-binding domain"
BPHL	670	genome.wustl.edu	37	6	3140668	3140668	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004332.2	+1	reviewed	p.I238T	0.881	140	0%	135	25.2%	45	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
PSMG4	389362	genome.wustl.edu	37	6	3263988	3263988	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001128592.1	+1	validated	p.R82H	1.000	110	0%	118	33.1%	41	36.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TXNDC5	81567	genome.wustl.edu	37	6	7899812	7899812	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_030810.2	-1	reviewed	p.P172	0.000	129	0%	93	32.3%	77	28.5%	-	-	-	NULL
RBM24	221662	genome.wustl.edu	37	6	17292140	17292140	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000503965	+1	known	p.P132L	0.583	31	0%	17	47.1%	6	50%	-	-	-	NULL
LRRC16A	55604	genome.wustl.edu	37	6	25619728	25619728	+	Missense_Mutation	SNP	C	C	T	rs192384666	by1000genomes	TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017640.5	+1	validated	p.R1300W	0.084	224	0%	277	28.9%	26	30.7%	benign(0)	tolerated(0.13)	neutral(0.253)	NULL
HIST1H2BD	3017	genome.wustl.edu	37	6	26158426	26158426	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_021063.2	+1	reviewed	p.A10V	1.000	361	0%	377	22.8%	112	32.1%	benign(0.132)	tolerated(0.06)	neutral(0.334)	superfamily_Histone-fold
HIST1H4I	8294	genome.wustl.edu	37	6	27107259	27107259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003495.2	+1	reviewed	p.V58L	1.000	114	0%	138	32.6%	4	25%	benign(0.268)	deleterious(0.01)	neutral(0.434)	HMMSmart_SM00417,HMMSmart_SM00803,HMMPfam_Histone,superfamily_Histone-fold
HIST1H2AH	85235	genome.wustl.edu	37	6	27115271	27115272	+	Frame_Shift_Del	DEL	GA	GA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	GA	GA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_080596.1	+1	reviewed	p.S123fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00414,superfamily_Histone-fold
ZNF187	7741	genome.wustl.edu	37	6	28244190	28244191	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_152736.4	+1	validated	p.T120fs	0.000:0.000	-	-	-	-	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
DDR1	780	genome.wustl.edu	37	6	30865356	30865356	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_013994.2	+1	reviewed	p.A739V	0.007	45	0%	38	34.2%	142	39.4%	benign(0.008)	tolerated(0.3)	neutral(0.029)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
MSH5	4439	genome.wustl.edu	37	6	31721180	31721180	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_025259.5	+1	reviewed	p.M322I	0.999	146	0.7%	196	31.1%	2	50%	benign(0.256)	tolerated(0.6)	neutral(0.031)	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII
HSPA1L	3305	genome.wustl.edu	37	6	31778370	31778370	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005527.3	-1	reviewed	p.R460	0.998	197	0%	198	35.4%	6	33.3%	-	-	-	HMMPfam_HSP70,superfamily_SSF100920
LRFN2	57497	genome.wustl.edu	37	6	40400259	40400259	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020737.1	-1	provisional	p.K198fs	0.955	-	-	-	-	-	-	-	-	-	HMMSmart_SM00369,superfamily_L domain-like
CAPN11	11131	genome.wustl.edu	37	6	44145028	44145028	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_007058.3	+1	reviewed	p.D429	0.964	68	0%	65	26.2%	1	0%	-	-	-	HMMPfam_Calpain_III,HMMSmart_calpain_III,superfamily_Peptidase_C2
EFHC1	114327	genome.wustl.edu	37	6	52319011	52319011	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018100.3	+1	reviewed	p.R281Q	1.000	334	0%	368	32.3%	90	37.7%	benign(0.127)	tolerated(0.33)	neutral(0.035)	HMMSmart_SM00676,HMMPfam_DUF1126
EYS	346007	genome.wustl.edu	37	6	65300468	65300468	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001142800.1	-1	reviewed	p.I1764	0.000	130	0%	142	26.8%	0	-	-	-	-	superfamily_Concanavalin A-like lectins/glucanases
FBXL4	26235	genome.wustl.edu	37	6	99374458	99374458	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_012160.3	-1	reviewed	p.Y136F	1.000	101	0%	153	19%	7	42.8%	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
ALDH8A1	64577	genome.wustl.edu	37	6	135254073	135254073	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_022568.2	-1	reviewed	p.T230	0.053	63	0%	47	27.7%	0	-	-	-	-	HMMPfam_Aldedh,superfamily_ALDH-like
MAP7	9053	genome.wustl.edu	37	6	136710602	136710602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003980.3	-1	reviewed	p.E100K	1.000	359	0%	370	30.3%	10	30%	unknown(0)	deleterious(0)	-	NULL
KIAA1244	57221	genome.wustl.edu	37	6	138608314	138608315	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020340.4	+1	validated	p.Q965fs	0.218:0.222	-	-	-	-	-	-	-	-	-	NULL
ARID1B	57492	genome.wustl.edu	37	6	157528378	157528378	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017519.2	+1	validated	p.L2017	1.000	144	0%	223	37.2%	29	37.9%	-	-	-	NULL
TMEM181	57583	genome.wustl.edu	37	6	159010786	159010786	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020823.1	+1	validated	p.K292R	0.002	298	0%	333	36.9%	9	22.2%	benign(0.059)	tolerated(0.51)	neutral(0.013)	NULL
TAGAP	117289	genome.wustl.edu	37	6	159457356	159457356	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_054114.3	-1	reviewed	p.R567C	0.000	50	0%	32	50%	3	0%	possibly_damaging(0.736)	deleterious(0.04)	deleterious(0.618)	NULL
WTAP	9589	genome.wustl.edu	37	6	160169389	160169389	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004906.3	+1	reviewed	p.F147S	1.000	233	0%	364	38.7%	45	24.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LPA	4018	genome.wustl.edu	37	6	160969563	160969563	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005577.2	-1	reviewed	p.V1701A	0.000	191	0%	179	27.4%	0	-	probably_damaging(0.962)	tolerated(0.26)	neutral(0.439)	superfamily_Kringle-like
FAM20C	56975	genome.wustl.edu	37	7	195605	195605	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020223.2	+1	validated	p.A219	0.000	83	0%	63	36.5%	8	0%	-	-	-	NULL
FAM20C	56975	genome.wustl.edu	37	7	299804	299804	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020223.2	+1	validated	p.L538R	1.000	16	0%	15	33.3%	11	0%	unknown(0)	deleterious(0)	-	HMMPfam_DUF1193
INTS1	26173	genome.wustl.edu	37	7	1524821	1524821	+	Silent	SNP	A	A	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001080453.2	-1	validated	p.T1058	0.005	142	0.7%	169	35.5%	25	40%	-	-	-	NULL
CARD11	84433	genome.wustl.edu	37	7	2969648	2969648	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032415.3	-1	validated	p.I544T	0.921	78	0%	63	46%	2	0%	benign(0.002)	tolerated(0.08)	neutral(0.300)	NULL
SDK1	221935	genome.wustl.edu	37	7	4002440	4002440	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_152744.3	+1	validated	p.N462	0.212	57	0%	76	35.5%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
SDK1	221935	genome.wustl.edu	37	7	4050719	4050719	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_152744.3	+1	validated	p.R751	1.000	56	0%	65	26.2%	1	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PAPOLB	56903	genome.wustl.edu	37	7	4899793	4899793	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020144.4	-1	validated	p.S550N	0.427	144	0%	197	29.4%	0	-	benign(0.025)	tolerated(0.24)	neutral(0.038)	NULL
FAM126A	84668	genome.wustl.edu	37	7	23030705	23030705	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032581.3	-1	reviewed	p.V9A	1.000	553	0%	608	23.2%	5	0%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_Hyccin
HOXA7	3204	genome.wustl.edu	37	7	27195919	27195919	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006896.3	-1	reviewed	p.C82*	0.998	28	0%	30	40%	0	-	-	-	-	NULL
ANLN	54443	genome.wustl.edu	37	7	36464297	36464297	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000446635	+1	known	p.C239Y	0.827	313	0%	382	35.1%	3	66.6%	-	-	-	NULL
CDK13	8621	genome.wustl.edu	37	7	40027496	40027496	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003718.4	+1	reviewed	p.A504T	0.494	114	1.8%	158	31.6%	20	30%	possibly_damaging(0.792)	deleterious(0.03)	deleterious(0.661)	NULL
TYW1	55253	genome.wustl.edu	37	7	66703327	66703327	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018264.2	+1	validated	p.I670	0.997	542	0.2%	659	23.4%	4	50%	-	-	-	NULL
SEMA3D	223117	genome.wustl.edu	37	7	84629153	84629153	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_152754.2	-1	validated	p.T646M	1.000	182	0%	183	35.5%	1	100%	possibly_damaging(0.949)	tolerated(0.15)	deleterious(0.634)	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ABCB1	5243	genome.wustl.edu	37	7	87196106	87196106	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000927.3	-1	reviewed	p.L175	0.987	293	0%	346	33.8%	4	0%	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SAMD9	54809	genome.wustl.edu	37	7	92731627	92731627	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017654.2	-1	validated	p.F1262V	0.000	103	0%	86	39.5%	6	66.6%	benign(0.006)	tolerated(0.14)	neutral(0.249)	NULL
TRRAP	8295	genome.wustl.edu	37	7	98497120	98497120	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003496.2	+1	validated	p.Q237K	1.000	502	0.6%	644	27%	3	66.6%	unknown(0)	deleterious(0)	-	superfamily_ARM repeat
ZNF394	84124	genome.wustl.edu	37	7	99091517	99091517	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032164.2	-1	provisional	p.H441Y	0.128	302	0.3%	258	27.5%	25	36%	benign(0)	tolerated(0.34)	neutral(0.023)	NULL
NAPEPLD	222236	genome.wustl.edu	37	7	102755565	102755565	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001122838.1	-1	validated	p.D333G	1.000	532	0%	544	29.8%	3	66.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_SSF56281
LAMB1	3912	genome.wustl.edu	37	7	107618564	107618565	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002291.2	-1	reviewed	p.C309fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,PatternScan_EGF_1,superfamily_EGF/Laminin
FOXP2	93986	genome.wustl.edu	37	7	114270012	114270012	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_148898.2	+1	reviewed	p.Q208	0.996	24	0%	73	34.2%	1	0%	-	-	-	NULL
TES	26136	genome.wustl.edu	37	7	115889244	115889244	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015641.2	+1	reviewed	p.T95M	1.000	205	0%	258	34.9%	63	41.2%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_PET
SPAM1	6677	genome.wustl.edu	37	7	123594428	123594428	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003117.4	+1	reviewed	p.Q268	0.000	208	0.5%	289	11.1%	0	-	-	-	-	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
MEST	4232	genome.wustl.edu	37	7	130138027	130138027	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002402.2	+1	reviewed	p.A129	0.009	192	0%	186	30.6%	45	37.7%	-	-	-	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases
PODXL	5420	genome.wustl.edu	37	7	131191403	131191403	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001018111.2	-1	reviewed	p.C395Y	0.127	204	0%	220	27.7%	33	9%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_CD34_antigen
PLXNA4	91584	genome.wustl.edu	37	7	131870086	131870086	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020911.1	-1	validated	p.R1044W	1.000	233	0%	209	28.7%	0	-	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
SLC13A4	26266	genome.wustl.edu	37	7	135368986	135368986	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_012450.2	-1	validated	p.P543	0.235	143	0.7%	262	27.5%	3	66.6%	-	-	-	HMMPfam_Na_sulph_symp
TRBV4-1	28617	genome.wustl.edu	37	7	142013390	142013390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000390357	+1	known	p.R82H	0.004	185	1.1%	270	25.9%	3	0%	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	HMMPfam_V-set,superfamily_Immunoglobulin
ZYX	7791	genome.wustl.edu	37	7	143079447	143079447	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001010972.1	+1	reviewed	p.P105	1.000	28	0%	30	23.3%	168	8.9%	-	-	-	NULL
EPHA1	2041	genome.wustl.edu	37	7	143095948	143095948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005232.4	-1	reviewed	p.R361H	0.924	58	0%	39	28.2%	9	55.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CNTNAP2	26047	genome.wustl.edu	37	7	147964161	147964161	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014141.5	+1	reviewed	p.S1140G	0.510	536	0%	619	28.8%	0	-	benign(0.001)	tolerated(0.25)	neutral(0.037)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
HTR5A	3361	genome.wustl.edu	37	7	154876043	154876043	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024012.2	+1	reviewed	p.I307T	1.000	383	0%	439	35.5%	0	-	benign(0.015)	tolerated(0.5)	neutral(0.011)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RBM33	155435	genome.wustl.edu	37	7	155504005	155504005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_053043.2	+1	validated	p.P353T	1.000	87	1.1%	125	30.4%	3	0%	unknown(0)	deleterious(0.05)	-	NULL
PTPRN2	5799	genome.wustl.edu	37	7	157475480	157475480	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002847.3	-1	reviewed	p.R646	0.651	173	0%	203	22.7%	3	0%	-	-	-	NULL
ERICH1	157697	genome.wustl.edu	37	8	623731	623731	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_207332.1	-1	provisional	p.E207D	0.000	96	0%	109	32.1%	7	28.5%	possibly_damaging(0.649)	tolerated(0.09)	deleterious(0.524)	NULL
MTMR7	9108	genome.wustl.edu	37	8	17157434	17157434	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004686.4	-1	reviewed	p.H640	0.000	112	0%	117	24.8%	1	100%	-	-	-	NULL
PIWIL2	55124	genome.wustl.edu	37	8	22146110	22146110	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001135721.1	+1	validated	p.I306N	1.000	368	0%	400	31.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_PAZ domain
SLC25A37	51312	genome.wustl.edu	37	8	23423645	23423645	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016612.2	+1	provisional	p.D79N	0.998	82	0%	88	25%	5	0%	benign(0.016)	tolerated(0.45)	neutral(0.013)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
FBXO16	157574	genome.wustl.edu	37	8	28314423	28314423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_172366.2	-1	reviewed	p.A123T	0.613	155	0%	210	35.7%	9	66.6%	benign(0)	tolerated(1)	-	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383
GSR	2936	genome.wustl.edu	37	8	30541704	30541704	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000637.2	-1	validated	p.D352N	1.000	381	0%	438	36.5%	106	39.6%	benign(0.172)	tolerated(1)	neutral(0.015)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
KAT6A	7994	genome.wustl.edu	37	8	41790512	41790512	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001099412.1	-1	validated	p.G1742	1.000	350	0.3%	385	32.2%	12	50%	-	-	-	NULL
KAT6A	7994	genome.wustl.edu	37	8	41790636	41790636	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001099412.1	-1	validated	p.P1701L	0.909	86	0%	91	37.4%	1	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
KIAA0146	23514	genome.wustl.edu	37	8	48320451	48320451	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001080394.1	+1	predicted	p.L269V	1.000	283	0%	392	32.4%	19	21%	possibly_damaging(0.868)	deleterious(0.02)	deleterious(0.720)	NULL
PRDM14	63978	genome.wustl.edu	37	8	70981731	70981731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024504.2	-1	validated	p.A122V	0.000	35	0%	33	39.4%	0	-	benign(0.009)	tolerated(0.15)	neutral(0.241)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77763461	77763461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024721.4	+1	validated	p.R1390H	1.000	82	0%	102	39.2%	0	-	possibly_damaging(0.646)	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RUNX1T1	862	genome.wustl.edu	37	8	92998418	92998418	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_175634.1	-1	reviewed	p.G405R	1.000	127	0%	107	31.8%	3	0%	possibly_damaging(0.904)	tolerated(0.31)	neutral(0.386)	NULL
ESRP1	54845	genome.wustl.edu	37	8	95683864	95683864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017697.3	+1	validated	p.R473C	1.000	248	0%	219	28.8%	33	36.3%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
CSMD3	114788	genome.wustl.edu	37	8	113402991	113402991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_198123.1	-1	validated	p.R1946C	1.000	319	0%	361	33.8%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
TNFRSF11B	4982	genome.wustl.edu	37	8	119941025	119941025	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002546.3	-1	reviewed	p.D182N	1.000	520	0.2%	592	32.3%	2	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMSmart_SM00208
ZNF623	9831	genome.wustl.edu	37	8	144732159	144732159	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014789.3	+1	validated	p.T39	0.000	97	0%	119	31.9%	7	28.5%	-	-	-	NULL
FOXH1	8928	genome.wustl.edu	37	8	145700372	145700372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003923.2	-1	reviewed	p.P116Q	0.935	12	0%	10	40%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
KIAA2026	158358	genome.wustl.edu	37	9	5921511	5921511	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001017969.2	-1	validated	p.A1495	0.051	241	0%	274	27%	10	10%	-	-	-	NULL
RECK	8434	genome.wustl.edu	37	9	36110070	36110070	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_021111.2	+1	reviewed	p.F628L	1.000	253	0%	315	33.3%	4	0%	benign(0.001)	tolerated(0.2)	neutral(0.049)	superfamily_Kazal-type serine protease inhibitors
SHB	6461	genome.wustl.edu	37	9	37948720	37948720	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003028.2	-1	validated	p.A420T	0.995	91	0%	85	22.4%	34	23.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
C9orf57	138240	genome.wustl.edu	37	9	74667321	74667321	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001128618.1	-1	validated	p.C126Y	1.000	337	0%	326	33.1%	0	-	possibly_damaging(0.819)	-	-	NULL
TLE1	7088	genome.wustl.edu	37	9	84202674	84202674	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005077.3	-1	provisional	p.T633	0.630	175	0%	161	34.2%	49	32.6%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40
NTRK2	4915	genome.wustl.edu	37	9	87570325	87570325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006180.3	+1	reviewed	p.V689M	1.000	76	0%	80	35%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like
PTCH1	5727	genome.wustl.edu	37	9	98224138	98224138	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000264.3	-1	reviewed	p.Q901H	1.000	146	0%	169	34.3%	23	60.8%	probably_damaging(0.991)	tolerated(0.13)	deleterious(0.697)	HMMPfam_Patched
ZNF189	7743	genome.wustl.edu	37	9	104171915	104171915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003452.2	+1	validated	p.T622I	0.990	108	0%	135	29.6%	16	12.5%	benign(0)	tolerated(0.08)	neutral(0.300)	superfamily_C2H2 and C2HC zinc fingers
PBX3	5090	genome.wustl.edu	37	9	128724473	128724473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006195.5	+1	validated	p.G368R	1.000	271	0%	275	37.1%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
GARNL3	84253	genome.wustl.edu	37	9	130147340	130147340	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032293.4	+1	validated	p.T768	0.633	111	0.9%	84	36.9%	5	0%	-	-	-	HMMPfam_CNH,HMMSmart_SM00036
SLC2A8	29988	genome.wustl.edu	37	9	130164873	130164873	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000419132	+1	known	p.A98V	1.000	26	0%	16	37.5%	19	26.3%	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
SPTAN1	6709	genome.wustl.edu	37	9	131331071	131331071	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001130438.1	+1	validated	p.Q86	0.957	145	0%	199	26.6%	37	21.6%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
RAPGEF1	2889	genome.wustl.edu	37	9	134526254	134526254	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_198679.1	-1	reviewed	p.S49	0.849	738	0%	843	27.6%	3	33.3%	-	-	-	NULL
CEL	1056	genome.wustl.edu	37	9	135939901	135939901	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001807.3	+1	reviewed	p.T62	0.063	162	0%	184	29.3%	39	41%	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
PTGDS	5730	genome.wustl.edu	37	9	139875307	139875307	+	Nonstop_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000954.5	+1	reviewed	p.*191Y	0.986	122	0%	112	26.8%	289	0.3%	-	-	-	NULL
TPRN	286262	genome.wustl.edu	37	9	140087025	140087027	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173691.3	-1	validated	p.E557in_frame_del	0.745:0.829:0.911	-	-	-	-	-	-	-	-	-	NULL
COBRA1	25920	genome.wustl.edu	37	9	140157577	140157577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015456.3	+1	validated	p.T229M	1.000	107	0.9%	117	37.6%	84	29.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COBRA1
SFMBT2	57713	genome.wustl.edu	37	10	7262396	7262396	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001029880.1	-1	provisional	p.R436Q	0.441	277	0%	301	28.9%	0	-	probably_damaging(0.976)	tolerated(0.33)	neutral(0.442)	HMMPfam_MBT,HMMSmart_SM00561,superfamily_Tudor/PWWP/MBT
USP6NL	9712	genome.wustl.edu	37	10	11505297	11505297	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001080491.2	-1	validated	p.R561W	1.000	54	0%	52	34.6%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHTKD1	55526	genome.wustl.edu	37	10	12136161	12136161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018706.5	+1	validated	p.R417C	1.000	247	0.4%	255	29.8%	9	11.1%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_E1_dh,superfamily_Thiamin diphosphate-binding fold (THDP-binding)
CAMK1D	57118	genome.wustl.edu	37	10	12858303	12858303	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_153498.2	+1	reviewed	p.C270Y	1.000	123	0%	176	34.1%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
RPP38	10557	genome.wustl.edu	37	10	15145393	15145393	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001097590.1	+1	validated	p.N27I	1.000	87	0%	125	37.6%	31	45.1%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
ARMC3	219681	genome.wustl.edu	37	10	23248346	23248346	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173081.3	+1	validated	p.E127G	1.000	97	0%	137	13.9%	56	48.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMSmart_SM00185,superfamily_ARM repeat
KIAA1217	56243	genome.wustl.edu	37	10	24816898	24816898	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_019590.3	+1	validated	p.N978H	1.000	275	0.4%	462	26.4%	26	53.8%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24817012	24817012	+	Silent	SNP	A	A	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_019590.3	+1	validated	p.R1016	0.292	100	0%	133	23.3%	20	40%	-	-	-	NULL
KIAA1217	56243	genome.wustl.edu	37	10	24832087	24832087	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_019590.3	+1	validated	p.T1296	0.337	86	0%	102	30.4%	33	42.4%	-	-	-	NULL
GPR158	57512	genome.wustl.edu	37	10	25465030	25465030	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020752.2	+1	validated	p.R227	1.000	29	0%	19	52.6%	0	-	-	-	-	NULL
APBB1IP	54518	genome.wustl.edu	37	10	26856408	26856408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000445780	+1	known	p.R608C	0.800	39	0%	64	26.6%	14	0%	unknown(0)	-	-	NULL
MTPAP	55149	genome.wustl.edu	37	10	30629364	30629364	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018109.3	-1	validated	p.V116I	0.881	155	0%	196	18.4%	10	20%	benign(0.33)	deleterious(0)	deleterious(0.548)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37508239	37508239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_052997.2	+1	validated	p.P1144H	0.124	73	0%	134	36.6%	0	-	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
BMS1	9790	genome.wustl.edu	37	10	43297586	43297586	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014753.3	+1	reviewed	p.V750A	1.000	271	0%	416	25.5%	8	12.5%	probably_damaging(0.988)	tolerated(0.25)	deleterious(0.474)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZNF32	7580	genome.wustl.edu	37	10	44141556	44141556	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001005368.1	-1	validated	p.L9fs	1.000	-	-	-	-	-	-	-	-	-	NULL
BICC1	80114	genome.wustl.edu	37	10	60549561	60549561	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001080512.1	+1	reviewed	p.S305	1.000	278	0%	361	26.3%	2	0%	-	-	-	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
ARID5B	84159	genome.wustl.edu	37	10	63845592	63845607	+	Frame_Shift_Del	DEL	TCAAACATGAAATACC	TCAAACATGAAATACC	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	TCAAACATGAAATACC	TCAAACATGAAATACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032199.2	+1	validated	p.H446fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000:1.000:1.000:0.994:0.986:0.961	-	-	-	-	-	-	-	-	-	NULL
H2AFY2	55506	genome.wustl.edu	37	10	71860048	71860048	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018649.2	+1	validated	p.A258V	0.996	105	0%	179	32.4%	104	33.6%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Macro,superfamily_SSF52949
PTEN	5728	genome.wustl.edu	37	10	89720749	89720749	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000371953	+1	known	p.I300fs	1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
KIF20B	9585	genome.wustl.edu	37	10	91469149	91469149	+	Silent	SNP	T	T	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016195.2	+1	validated	p.P94	0.866	294	0.3%	366	32%	1	100%	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
MARCH5	54708	genome.wustl.edu	37	10	94109562	94109562	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017824.4	+1	validated	p.S230C	1.000	295	0%	367	32.4%	39	33.3%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
LOXL4	84171	genome.wustl.edu	37	10	100010926	100010926	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032211.6	-1	reviewed	p.V699A	1.000	133	0%	129	26.4%	3	0%	possibly_damaging(0.678)	deleterious(0)	deleterious(0.686)	HMMPfam_Lysyl_oxidase
PITX3	5309	genome.wustl.edu	37	10	103990448	103990448	+	Silent	SNP	G	G	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005029.3	-1	reviewed	p.A244	0.329	18	0%	22	22.7%	0	-	-	-	-	NULL
GBF1	8729	genome.wustl.edu	37	10	104135324	104135324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004193.1	+1	provisional	p.A1289V	0.773	86	0%	73	27.4%	40	25%	benign(0)	tolerated(0.61)	neutral(0.004)	NULL
CUEDC2	79004	genome.wustl.edu	37	10	104183256	104183256	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024040.2	-1	validated	p.R264L	1.000	231	0%	305	32.1%	105	33.3%	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
CYP17A1	1586	genome.wustl.edu	37	10	104595135	104595135	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000102.3	-1	reviewed	p.I104	0.953	134	0%	91	24.2%	0	-	-	-	-	HMMPfam_p450,superfamily_Cytochrome P450
INA	9118	genome.wustl.edu	37	10	105048271	105048273	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032727.3	+1	reviewed	p.E452in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ITPRIP	85450	genome.wustl.edu	37	10	106075011	106075011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_033397.2	-1	provisional	p.L267M	1.000	40	0%	24	29.2%	6	16.6%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	NULL
INPP5F	22876	genome.wustl.edu	37	10	121586603	121586603	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014937.2	+1	reviewed	p.R904W	1.000	166	0.6%	202	31.7%	5	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TUBGCP2	10844	genome.wustl.edu	37	10	135101667	135101667	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006659.2	-1	validated	p.T563fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Spc97_Spc98
PHRF1	57661	genome.wustl.edu	37	11	606568	606568	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020901.2	+1	validated	p.R526	0.014	21	0%	11	36.4%	14	42.8%	-	-	-	NULL
AP2A2	161	genome.wustl.edu	37	11	993936	993936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_012305.2	+1	validated	p.R578H	1.000	45	0%	29	41.4%	73	41%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Adaptin_N,superfamily_ARM repeat
IGF2-AS1	51214	genome.wustl.edu	37	11	2167602	2167602	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000381361	+1	known	p.G144	0.000	85	0%	82	26.8%	1	0%	-	-	-	NULL
OR52A5	390054	genome.wustl.edu	37	11	5153839	5153840	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001005160.2	-1	validated	p.S11fs	0.127:0.132	-	-	-	-	-	-	-	-	-	superfamily_SSF81321
OR2D3	120775	genome.wustl.edu	37	11	6942409	6942409	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001004684.1	+1	provisional	p.Q59H	0.077	349	0%	321	27.4%	0	-	benign(0.004)	tolerated(0.54)	neutral(0.007)	HMMPfam_7tm_1,superfamily_SSF81321
TUB	7275	genome.wustl.edu	37	11	8118337	8118337	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003320.4	+1	reviewed	p.S279N	1.000	109	0%	105	29.5%	1	0%	probably_damaging(1)	tolerated(0.53)	deleterious(0.507)	NULL
ST5	6764	genome.wustl.edu	37	11	8732677	8732678	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005418.3	-1	reviewed	p.E758fs	0.979:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_uDENN,HMMSmart_SM00800
IGSF22	283284	genome.wustl.edu	37	11	18731225	18731225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173588.3	-1	validated	p.P802S	1.000	66	0%	38	36.8%	0	-	probably_damaging(0.998)	tolerated(0.13)	deleterious(0.727)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
C11orf41	25758	genome.wustl.edu	37	11	33604925	33604925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_012194.1	+1	validated	p.A1191T	1.000	139	0%	121	38.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NAT10	55226	genome.wustl.edu	37	11	34139806	34139806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024662.2	+1	validated	p.V213I	0.001	174	0%	199	34.2%	10	50%	benign(0)	tolerated(0.67)	neutral(0.003)	NULL
ABTB2	25841	genome.wustl.edu	37	11	34173941	34173941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_145804.1	-1	provisional	p.R838Q	1.000	20	0%	13	38.5%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
OR4A47	403253	genome.wustl.edu	37	11	48510665	48510665	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001005512.2	+1	validated	p.G107	0.004	219	0%	293	25.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
FAM111B	374393	genome.wustl.edu	37	11	58892887	58892887	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_198947.3	+1	validated	p.G439	0.036	146	0%	169	34.3%	1	100%	-	-	-	superfamily_Trypsin-like serine proteases
SLC22A25	387601	genome.wustl.edu	37	11	62931534	62931534	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_199352.3	-1	validated	p.T469I	0.000	176	0%	211	28%	0	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
SLC22A11	55867	genome.wustl.edu	37	11	64329795	64329795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018484.2	+1	reviewed	p.A237T	0.000	37	0%	22	45.5%	0	-	benign(0.005)	tolerated(0.13)	neutral(0.253)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
CCDC87	55231	genome.wustl.edu	37	11	66360143	66360143	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018219.2	-1	validated	p.R115Q	0.994	43	0%	35	48.6%	0	-	probably_damaging(0.999)	tolerated(0.17)	deleterious(0.549)	NULL
CARNS1	57571	genome.wustl.edu	37	11	67191964	67191964	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020811.1	+1	validated	p.A792	0.839	25	0%	20	30%	4	75%	-	-	-	superfamily_Glutathione synthetase ATP-binding domain-like
GPR152	390212	genome.wustl.edu	37	11	67219093	67219093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_206997.1	-1	validated	p.S368L	0.000	89	0%	70	31.4%	1	100%	benign(0)	tolerated(1)	-	NULL
CCND1	595	genome.wustl.edu	37	11	69466019	69466019	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_053056.2	+1	reviewed	p.T286I	1.000	13	0%	17	35.3%	38	47.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ARAP1	116985	genome.wustl.edu	37	11	72437837	72437837	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001040118.2	-1	reviewed	p.A113T	0.000	26	0%	30	33.3%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
PGM2L1	283209	genome.wustl.edu	37	11	74056662	74056662	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173582.3	-1	validated	p.L357S	0.998	396	0%	569	25.3%	3	33.3%	benign(0.416)	deleterious(0)	deleterious(0.579)	superfamily_Phosphoglucomutase first 3 domains
KCTD14	65987	genome.wustl.edu	37	11	77727840	77727840	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_023930.3	-1	validated	p.L189	1.000	184	0%	218	32.1%	12	16.6%	-	-	-	NULL
SESN3	143686	genome.wustl.edu	37	11	94923096	94923099	+	Frame_Shift_Del	DEL	TAAG	TAAG	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	TAAG	TAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_144665.2	-1	provisional	p.Y123fs	1.000:1.000:0.822:0.988	-	-	-	-	-	-	-	-	-	HMMPfam_PA26
DIXDC1	85458	genome.wustl.edu	37	11	111865796	111865796	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001037954.2	+1	validated	p.R497Q	0.013	128	0%	195	29.2%	20	5%	-	-	-	NULL
IL10RA	3587	genome.wustl.edu	37	11	117869601	117869601	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001558.3	+1	reviewed	p.L328	1.000	96	0%	116	25.9%	9	0%	-	-	-	NULL
HMBS	3145	genome.wustl.edu	37	11	118963199	118963199	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000190.3	+1	reviewed	p.R246H	1.000	117	0%	75	25.3%	26	26.9%	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	HMMPfam_Porphobil_deamC,superfamily_Porphobilinogen deaminase (hydroxymethylbilane synthase) C-terminal domain
HINFP	25988	genome.wustl.edu	37	11	119003827	119003827	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015517.3	+1	validated	p.K346T	1.000	132	0%	145	22.8%	17	35.2%	possibly_damaging(0.553)	tolerated(0.54)	neutral(0.196)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CBL	867	genome.wustl.edu	37	11	119170319	119170319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005188.2	+1	reviewed	p.A850V	0.000	106	0%	127	44.1%	2	50%	benign(0.086)	deleterious(0.05)	neutral(0.352)	NULL
SNORD14D	85390	genome.wustl.edu	37	11	122929542	122929542	+	RNA	SNP	G	G	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NR_001454.2	-1	provisional	NULL	0.002	142	0%	157	33.8%	3	0%	-	-	-	-
KDM5A	5927	genome.wustl.edu	37	12	432362	432362	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001042603.1	-1	reviewed	p.P721T	1.000	74	0%	115	28.7%	4	0%	benign(0)	tolerated(1)	-	HMMPfam_zf-C5HC2
NCAPD2	9918	genome.wustl.edu	37	12	6619866	6619866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014865.3	+1	validated	p.A112T	0.888	208	0%	272	32.7%	10	60%	benign(0.056)	tolerated(0.67)	neutral(0.006)	NULL
LAG3	3902	genome.wustl.edu	37	12	6886966	6886966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002286.5	+1	reviewed	p.R437H	0.000	131	0%	149	10.1%	14	0%	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	NULL
GUCY2C	2984	genome.wustl.edu	37	12	14772224	14772224	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004963.3	-1	validated	p.V932	0.942	204	0%	237	16.9%	8	37.5%	-	-	-	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain,PatternScan_GUANYLATE_CYCLASE_1
KLHDC5	57542	genome.wustl.edu	37	12	27944687	27944687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020782.1	+1	validated	p.G307R	1.000	265	0%	276	30.4%	10	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
ZCRB1	85437	genome.wustl.edu	37	12	42711698	42711698	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_033114.3	-1	reviewed	p.V39D	1.000	205	0%	235	35.3%	83	34.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TMEM117	84216	genome.wustl.edu	37	12	44238578	44238578	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032256.1	+1	provisional	p.A42T	1.000	487	0%	482	25.5%	3	66.6%	probably_damaging(0.998)	tolerated(0.09)	deleterious(0.771)	NULL
CCNT1	904	genome.wustl.edu	37	12	49087433	49087434	+	In_Frame_Ins	INS	-	-	ATG	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001240.2	-1	reviewed	p.521in_frame_insH	1.000:0.817	-	-	-	-	-	-	-	-	-	NULL
FAM186B	84070	genome.wustl.edu	37	12	49993459	49993459	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032130.2	-1	validated	p.A655V	0.000	105	0%	114	28.1%	2	0%	benign(0.001)	tolerated(0.5)	neutral(0.010)	NULL
KRT6C	286887	genome.wustl.edu	37	12	52867004	52867006	+	In_Frame_Del	DEL	TTG	TTG	-	rs58401785		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	TTG	TTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173086.4	-1	reviewed	p.N172in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Filament
ITGA5	3678	genome.wustl.edu	37	12	54803020	54803020	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002205.2	-1	reviewed	p.R193	1.000	118	0%	102	20.6%	10	0%	-	-	-	superfamily_SSF69318
TIMELESS	8914	genome.wustl.edu	37	12	56816656	56816656	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003920.3	-1	validated	p.E805K	0.999	179	0%	181	34.8%	10	60%	benign(0.245)	tolerated(0.59)	neutral(0.030)	HMMPfam_TIMELESS_C
BAZ2A	11176	genome.wustl.edu	37	12	56994977	56994977	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_013449.3	-1	validated	p.Q1429	1.000	196	0.5%	223	29.6%	17	23.5%	-	-	-	NULL
TMEM194A	23306	genome.wustl.edu	37	12	57464673	57464673	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001130963.1	-1	validated	p.R86*	0.996	144	0%	133	30.8%	2	0%	-	-	-	NULL
KIF5A	3798	genome.wustl.edu	37	12	57944175	57944175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004984.2	+1	reviewed	p.V41I	1.000	52	0%	58	29.3%	0	-	benign(0)	tolerated(0.21)	neutral(0.044)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
AGAP2	116986	genome.wustl.edu	37	12	58125612	58125612	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001122772.1	-1	validated	p.R645C	1.000	53	0%	56	41.1%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
TSPAN31	6302	genome.wustl.edu	37	12	58139530	58139530	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005981.3	+1	reviewed	p.L22	1.000	438	0%	445	27.9%	19	10.5%	-	-	-	HMMPfam_Tetraspannin
USP15	9958	genome.wustl.edu	37	12	62786931	62786932	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006313.1	+1	provisional	p.Y811fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_UCH,superfamily_SSF54001
AVPR1A	552	genome.wustl.edu	37	12	63544126	63544126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000706.3	-1	reviewed	p.A164V	1.000	40	0%	19	47.4%	6	0%	benign(0.064)	tolerated(0.06)	neutral(0.327)	HMMPfam_7tm_1,superfamily_SSF81321
ENSG00000246966	0	genome.wustl.edu	37	12	70931917	70931917	+	RNA	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000501222	+1	known	NULL	0.000	247	0%	280	29.6%	0	-	-	-	-	-
CEP290	80184	genome.wustl.edu	37	12	88496784	88496784	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_025114.3	-1	reviewed	p.M941T	0.999	138	0%	152	24.3%	3	0%	benign(0.001)	tolerated(0.98)	-	NULL
STAB2	55576	genome.wustl.edu	37	12	104084218	104084218	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017564.9	+1	reviewed	p.G1067C	0.987	356	0%	428	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1
ACACB	32	genome.wustl.edu	37	12	109625926	109625926	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001093.3	+1	reviewed	p.G701	0.782	208	0%	191	28.3%	1	0%	-	-	-	HMMPfam_Biotin_carb_C,superfamily_Rudiment single hybrid motif
ACACB	32	genome.wustl.edu	37	12	109675151	109675151	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001093.3	+1	reviewed	p.R1543H	1.000	194	0%	204	36.3%	1	0%	possibly_damaging(0.797)	deleterious(0)	deleterious(0.744)	HMMPfam_ACC_central
GLTP	51228	genome.wustl.edu	37	12	110295443	110295443	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016433.3	-1	reviewed	p.T62A	1.000	260	0%	327	13.8%	63	9.5%	benign(0.014)	deleterious(0.02)	neutral(0.384)	HMMPfam_GLTP,superfamily_Glycolipid transfer protein GLTP
SLC24A6	80024	genome.wustl.edu	37	12	113737756	113737756	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024959.2	-1	validated	p.V527	0.998	62	0%	53	47.2%	18	22.2%	-	-	-	HMMPfam_Na_Ca_ex
CCDC64	92558	genome.wustl.edu	37	12	120518739	120518739	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_207311.2	+1	validated	p.R453*	1.000	149	0%	186	20.4%	5	0%	-	-	-	NULL
EP400	57634	genome.wustl.edu	37	12	132471209	132471209	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015409.3	+1	validated	p.A693T	0.805	182	0%	190	31.6%	3	33.3%	unknown(0)	-	-	NULL
CHFR	55743	genome.wustl.edu	37	12	133434124	133434124	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018223.2	-1	validated	p.T282	0.980	92	0%	98	18.4%	12	16.6%	-	-	-	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box
PSPC1	55269	genome.wustl.edu	37	13	20279934	20279934	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001042414.1	-1	validated	p.P418	1.000	429	0.2%	493	16%	71	32.3%	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23907759	23907759	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014363.4	-1	reviewed	p.R3419H	1.000	172	0%	174	36.2%	1	0%	possibly_damaging(0.895)	deleterious(0.03)	deleterious(0.718)	NULL
SPATA13	221178	genome.wustl.edu	37	13	24871623	24871623	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000424834	+1	known	p.Q1149*	1.000	141	0%	179	28.5%	4	25%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
FAM123A	219287	genome.wustl.edu	37	13	25744772	25744772	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_152704.2	-1	validated	p.T329M	0.388	30	0%	35	31.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_WTX
LNX2	222484	genome.wustl.edu	37	13	28127466	28127466	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_153371.3	-1	validated	p.L553F	0.971	153	0%	123	25.2%	5	60%	probably_damaging(0.98)	deleterious(0.05)	deleterious(0.769)	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ
SLC7A1	6541	genome.wustl.edu	37	13	30088675	30088675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003045.4	-1	validated	p.A611V	1.000	40	0%	31	19.4%	6	33.3%	possibly_damaging(0.897)	tolerated(0.31)	neutral(0.381)	NULL
DCLK1	9201	genome.wustl.edu	37	13	36686146	36686146	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004734.3	-1	validated	p.V195M	1.000	166	0%	153	36.6%	1	0%	benign(0.253)	deleterious(0.02)	neutral(0.409)	HMMSmart_DCX,superfamily_SSF89837
CCNA1	8900	genome.wustl.edu	37	13	37012830	37012830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003914.3	+1	reviewed	p.T240M	1.000	233	0.4%	343	16%	63	12.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cyclin_N,superfamily_Cyclin-like
FREM2	341640	genome.wustl.edu	37	13	39264281	39264281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_207361.4	+1	reviewed	p.R934W	0.942	66	0%	65	27.7%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	NULL
FOXO1	2308	genome.wustl.edu	37	13	41134406	41134406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002015.3	-1	reviewed	p.A408T	1.000	157	0%	234	29.9%	11	0%	benign(0)	tolerated(0.98)	-	NULL
ELF1	1997	genome.wustl.edu	37	13	41508071	41508072	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_172373.3	-1	reviewed	p.T450fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KIAA0564	23078	genome.wustl.edu	37	13	42306245	42306245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015058.1	-1	validated	p.G825R	1.000	264	0%	305	24.6%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
TSC22D1	8848	genome.wustl.edu	37	13	45148708	45148708	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_183422.2	-1	validated	p.Q501	0.000	53	0%	51	37.3%	18	44.4%	-	-	-	NULL
FAM194B	220081	genome.wustl.edu	37	13	46115775	46115775	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_182542.2	-1	predicted	p.T638I	0.000	483	0.2%	489	23.7%	0	-	benign(0.01)	tolerated(0.1)	neutral(0.287)	NULL
ENSG00000247181	0	genome.wustl.edu	37	13	76100787	76100787	+	RNA	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000499458	+1	known	NULL	0.000	268	0%	226	31.4%	0	-	-	-	-	-
LMO7	4008	genome.wustl.edu	37	13	76395591	76395591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015842.2	+1	reviewed	p.R596H	0.255	173	0%	173	24.3%	21	47.6%	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
DOCK9	23348	genome.wustl.edu	37	13	99489817	99489817	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000450257	-1	known	p.K89R	1.000	206	0%	310	24.8%	10	30%	-	-	-	NULL
NALCN	259232	genome.wustl.edu	37	13	101736067	101736067	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_052867.2	-1	validated	p.R1193H	1.000	199	0%	189	34.4%	1	0%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
GRK1	6011	genome.wustl.edu	37	13	114438067	114438067	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000335678	+1	known	p.D475N	1.000	93	0%	78	30.8%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMSmart_S_TK_X,superfamily_Kinase_like
NDRG2	57447	genome.wustl.edu	37	14	21490570	21490570	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_201535.1	-1	reviewed	p.Y68	1.000	426	0%	451	27.5%	108	21.2%	-	-	-	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
MYH6	4624	genome.wustl.edu	37	14	23862174	23862174	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002471.3	-1	validated	p.E1066D	1.000	367	0%	436	29.1%	0	-	probably_damaging(0.983)	deleterious(0.04)	deleterious(0.778)	superfamily_Prefoldin
RNF31	55072	genome.wustl.edu	37	14	24627149	24627149	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017999.4	+1	validated	p.G924S	1.000	133	0%	154	29.9%	67	43.2%	possibly_damaging(0.919)	deleterious(0.03)	deleterious(0.734)	HMMSmart_SM00647
TGM1	7051	genome.wustl.edu	37	14	24729227	24729227	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000359.2	-1	reviewed	p.Q265H	1.000	69	0%	107	29.9%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_SSF54001
RIPK3	11035	genome.wustl.edu	37	14	24808368	24808368	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006871.3	-1	reviewed	p.S108	0.024	82	0%	67	28.4%	8	37.5%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ARHGAP5	394	genome.wustl.edu	37	14	32560800	32560800	+	Frame_Shift_Del	DEL	T	T	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001030055.1	+1	reviewed	p.L309fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_FF,HMMSmart_SM00441
AKAP6	9472	genome.wustl.edu	37	14	33014801	33014801	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004274.4	+1	reviewed	p.A314	0.007	104	1%	128	28.1%	0	-	-	-	-	NULL
FAM179B	23116	genome.wustl.edu	37	14	45433542	45433542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015091.2	+1	validated	p.Y640H	0.998	131	0%	191	28.3%	3	0%	benign(0.183)	deleterious(0.01)	neutral(0.423)	superfamily_ARM repeat
PTGER2	5732	genome.wustl.edu	37	14	52781995	52781995	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000956.3	+1	reviewed	p.G243	0.001	58	0%	51	37.3%	3	33.3%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
LGALS3	3958	genome.wustl.edu	37	14	55611931	55611931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002306.3	+1	reviewed	p.S232N	0.000	205	0%	262	26.7%	674	25.9%	benign(0.003)	tolerated(1)	-	HMMPfam_Gal-bind_lectin,HMMSmart_SM00276,superfamily_Concanavalin A-like lectins/glucanases
KTN1	3895	genome.wustl.edu	37	14	56096811	56096811	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001079521.1	+1	validated	p.M406K	1.000	165	0%	301	33.2%	44	31.8%	benign(0.379)	tolerated(0.08)	neutral(0.421)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58790256	58790256	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002892.3	+1	reviewed	p.R168H	0.997	286	0%	456	35.5%	2	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RBB1NT
ARID4A	5926	genome.wustl.edu	37	14	58830926	58830926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002892.3	+1	reviewed	p.E707K	0.996	30	0%	29	24.1%	0	-	possibly_damaging(0.614)	deleterious(0.01)	deleterious(0.619)	NULL
GALNTL1	57452	genome.wustl.edu	37	14	69806319	69806319	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020692.2	+1	validated	p.I390	0.804	121	0%	179	33.5%	2	0%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
DCAF4	26094	genome.wustl.edu	37	14	73404734	73404734	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015604.3	+1	reviewed	p.S16	0.029	93	0%	105	28.6%	4	50%	-	-	-	NULL
C14orf43	91748	genome.wustl.edu	37	14	74203738	74203738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001043318.1	-1	validated	p.R571Q	1.000	79	0%	75	34.7%	9	44.4%	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	NULL
C14orf142	84520	genome.wustl.edu	37	14	93670110	93670110	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032490.4	-1	validated	p.A76T	0.997	630	0%	945	28.7%	47	48.9%	benign(0.118)	tolerated(0.51)	neutral(0.018)	NULL
SERPINA6	866	genome.wustl.edu	37	14	94780755	94780755	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001756.3	-1	reviewed	p.L77	1.000	202	0%	208	29.3%	55	50.9%	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
JAG2	3714	genome.wustl.edu	37	14	105611365	105611365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002226.3	-1	reviewed	p.R996S	1.000	16	0%	18	33.3%	22	27.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATP10A	57194	genome.wustl.edu	37	15	25924616	25924616	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024490.3	-1	reviewed	p.R1458W	0.001	48	0%	61	29.5%	2	0%	probably_damaging(0.983)	deleterious(0.04)	deleterious(0.778)	NULL
OTUD7A	161725	genome.wustl.edu	37	15	31776860	31776860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_130901.1	-1	provisional	p.S473L	1.000	55	0%	89	29.2%	2	0%	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
ZNF770	54989	genome.wustl.edu	37	15	35273760	35273760	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014106.2	-1	validated	p.R626*	1.000	278	0%	299	31.1%	21	14.2%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
VPS18	57617	genome.wustl.edu	37	15	41192235	41192235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020857.2	+1	reviewed	p.R407C	1.000	31	0%	28	35.7%	13	15.3%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Pep3_Vps18
SHF	90525	genome.wustl.edu	37	15	45491044	45491045	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_138356.2	-1	validated	p.K77fs	0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48063368	48063368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_153618.1	+1	reviewed	p.R870W	1.000	132	0%	161	27.3%	1	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LIPC	3990	genome.wustl.edu	37	15	58837951	58837951	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000236.2	+1	reviewed	p.A195	0.003	266	0%	227	29.1%	0	-	-	-	-	HMMPfam_Lipase,superfamily_alpha/beta-Hydrolases
RORA	6095	genome.wustl.edu	37	15	60803744	60803744	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_134260.2	-1	reviewed	p.Q200	1.000	132	0%	169	34.3%	1	0%	-	-	-	NULL
USP3	9960	genome.wustl.edu	37	15	63862667	63862667	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006537.2	+1	validated	p.R266H	1.000	242	0%	258	32.6%	15	20%	possibly_damaging(0.515)	tolerated(0.39)	neutral(0.190)	HMMPfam_UCH,superfamily_SSF54001
HERC1	8925	genome.wustl.edu	37	15	64017518	64017518	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003922.3	-1	reviewed	p.G1181S	1.000	164	0%	189	29.1%	0	-	probably_damaging(1)	-	-	NULL
PDCD7	10081	genome.wustl.edu	37	15	65425258	65425258	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005707.1	-1	reviewed	p.K288E	1.000	155	0%	256	31.6%	7	14.2%	probably_damaging(0.99)	tolerated(0.45)	neutral(0.454)	NULL
MAP2K5	5607	genome.wustl.edu	37	15	67984845	67984845	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_145160.1	+1	reviewed	p.N292	1.000	619	0%	749	24.3%	10	30%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ANP32A	8125	genome.wustl.edu	37	15	69080119	69080119	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006305.3	-1	validated	p.K65T	1.000	417	0%	506	31.6%	168	36.3%	probably_damaging(0.978)	deleterious(0.02)	deleterious(0.803)	superfamily_SSF52058
ENSG00000246762	0	genome.wustl.edu	37	15	72637760	72637760	+	RNA	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000498972	+1	known	NULL	0.000	107	0%	110	37.3%	5	60%	-	-	-	-
CD276	80381	genome.wustl.edu	37	15	73994829	73994829	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001024736.1	+1	validated	p.A105T	0.998	47	0%	37	32.4%	42	33.3%	possibly_damaging(0.905)	tolerated(0.07)	deleterious(0.678)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
RASGRF1	5923	genome.wustl.edu	37	15	79291062	79291062	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002891.4	-1	reviewed	p.Q967R	1.000	134	0%	101	26.7%	0	-	benign(0.335)	deleterious(0.02)	deleterious(0.488)	HMMPfam_RasGEF_N,HMMSmart_SM00229,superfamily_Ras GEF
EFTUD1	79631	genome.wustl.edu	37	15	82444641	82444641	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024580.5	-1	validated	p.I718M	0.558	309	0%	400	27.3%	18	27.7%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_Ribosomal protein S5 domain 2-like
RHCG	51458	genome.wustl.edu	37	15	90023542	90023542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016321.1	-1	provisional	p.S207N	1.000	267	0%	273	29.3%	0	-	benign(0.011)	tolerated(0.09)	neutral(0.297)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)
C15orf42	90381	genome.wustl.edu	37	15	90168724	90168724	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_152259.3	+1	validated	p.S1728N	0.000	70	0%	83	33.7%	1	0%	benign(0.039)	tolerated(0.4)	neutral(0.018)	NULL
KIF7	374654	genome.wustl.edu	37	15	90190109	90190109	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_198525.2	-1	validated	p.P580	0.000	58	0%	72	37.5%	2	0%	-	-	-	NULL
ANPEP	290	genome.wustl.edu	37	15	90347182	90347182	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001150.2	-1	reviewed	p.E411K	1.000	84	0%	66	30.3%	7	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M1,superfamily_SSF55486
IQGAP1	8826	genome.wustl.edu	37	15	91017141	91017141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003870.3	+1	reviewed	p.A816V	0.997	111	0%	146	30.8%	38	31.5%	benign(0)	tolerated(1)	-	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
BLM	641	genome.wustl.edu	37	15	91354578	91354578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000057.2	+1	reviewed	p.P1340S	0.063	254	0%	323	27.2%	10	50%	benign(0)	tolerated(0.86)	neutral(0.001)	NULL
THOC6	79228	genome.wustl.edu	37	16	3077037	3077037	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024339.3	+1	validated	p.R221L	1.000	381	0%	374	31.8%	62	38.7%	benign(0.282)	deleterious(0.04)	neutral(0.435)	superfamily_WD40 repeat-like
CREBBP	1387	genome.wustl.edu	37	16	3778177	3778177	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004380.2	-1	reviewed	p.L2291M	1.000	65	0%	89	30.3%	39	30.7%	unknown(0)	tolerated(0.38)	-	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7568166	7568166	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_145891.2	+1	reviewed	p.A35	0.924	116	0%	125	34.4%	0	-	-	-	-	NULL
CIITA	4261	genome.wustl.edu	37	16	11016049	11016049	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000246.3	+1	reviewed	p.V1059M	0.000	172	0%	183	30.6%	14	0%	possibly_damaging(0.944)	tolerated(0.1)	deleterious(0.675)	HMMSmart_SM00368,superfamily_RNI-like
DEXI	28955	genome.wustl.edu	37	16	11035795	11035795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014015.3	-1	validated	p.P23L	0.966	64	0%	74	28.4%	11	45.4%	possibly_damaging(0.877)	deleterious(0.02)	deleterious(0.725)	NULL
ABCC1	4363	genome.wustl.edu	37	16	16149959	16149959	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004996.3	+1	reviewed	p.M495T	1.000	228	0%	212	26.4%	14	28.5%	benign(0.349)	deleterious(0)	deleterious(0.555)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
DNAH3	55567	genome.wustl.edu	37	16	21011750	21011750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017539.1	-1	provisional	p.V2073M	1.000	415	0.2%	651	40.9%	4	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
TAOK2	9344	genome.wustl.edu	37	16	30002221	30002221	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004783.2	+1	validated	p.Q854	0.997	31	0%	31	41.9%	28	32.1%	-	-	-	NULL
TBC1D10B	26000	genome.wustl.edu	37	16	30369989	30369989	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015527.3	-1	validated	p.H598Y	1.000	46	0%	40	50%	37	29.7%	benign(0.034)	tolerated(0.12)	neutral(0.263)	superfamily_Ypt/Rab-GAP domain of gyp1p
ZNF689	115509	genome.wustl.edu	37	16	30615594	30615594	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_138447.1	-1	provisional	p.N498	0.000	33	0%	37	29.7%	3	0%	-	-	-	NULL
TRIM72	493829	genome.wustl.edu	37	16	31234185	31234185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001008274.3	+1	validated	p.R260C	0.971	74	0%	76	31.6%	0	-	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
ITGAX	3687	genome.wustl.edu	37	16	31368637	31368637	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000887.3	+1	reviewed	p.L128I	0.848	28	0%	30	33.3%	7	0%	benign(0.4)	deleterious(0.02)	deleterious(0.512)	superfamily_SSF69318
ABCC12	94160	genome.wustl.edu	37	16	48121955	48121955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_033226.2	-1	reviewed	p.P1173T	1.000	68	0%	95	31.6%	0	-	benign(0.205)	tolerated(0.24)	neutral(0.057)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
BRD7	29117	genome.wustl.edu	37	16	50368678	50368679	+	Frame_Shift_Del	DEL	CT	CT	-	rs145896392	byCluster;by1000genomes	TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_013263.3	-1	validated	p.E277fs	0.079:0.258	-	-	-	-	-	-	-	-	-	NULL
KCTD19	146212	genome.wustl.edu	37	16	67333285	67333285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001100915.1	-1	provisional	p.V323I	1.000	128	0%	116	23.3%	0	-	benign(0.052)	tolerated(0.36)	neutral(0.023)	NULL
TPPP3	51673	genome.wustl.edu	37	16	67424890	67424890	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015964.2	-1	validated	p.C42Y	1.000	198	0%	171	35.7%	2013	47.9%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_p25-alpha
RLTPR	146206	genome.wustl.edu	37	16	67680144	67680144	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001013838.1	+1	provisional	p.A102V	0.012	90	0%	90	34.4%	1	0%	possibly_damaging(0.916)	tolerated(0.06)	deleterious(0.690)	NULL
HP	3240	genome.wustl.edu	37	16	72089958	72089959	+	Frame_Shift_Ins	INS	-	-	TG	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000357763	+1	known	p.V1fs	0.002:0.002	-	-	-	-	-	-	-	-	-	NULL
GAN	8139	genome.wustl.edu	37	16	81411040	81411040	+	Missense_Mutation	SNP	C	C	T	rs112201678		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_022041.3	+1	reviewed	p.R545C	1.000	253	0%	288	10.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_Kelch,superfamily_Gal_oxid_central
ZC3H18	124245	genome.wustl.edu	37	16	88691637	88691637	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_144604.3	+1	validated	p.G690	1.000	62	0%	62	17.7%	20	25%	-	-	-	NULL
PIEZO1	9780	genome.wustl.edu	37	16	88800396	88800398	+	In_Frame_Del	DEL	CTG	CTG	-	rs144777557		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CTG	CTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000451779	-1	known	p.Q286in_frame_del	0.035:0.030:0.018	-	-	-	-	-	-	-	-	-	NULL
CBFA2T3	863	genome.wustl.edu	37	16	88958654	88958654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005187.4	-1	reviewed	p.V207L	1.000	59	0%	59	40.7%	3	0%	benign(0.003)	deleterious(0.02)	neutral(0.383)	HMMPfam_TAFH,HMMSmart_SM00549
TUSC5	286753	genome.wustl.edu	37	17	1198837	1198837	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_172367.2	+1	validated	p.R147H	1.000	63	0%	67	16.4%	0	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_CD225
GGT6	124975	genome.wustl.edu	37	17	4461796	4461796	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001122890.1	-1	validated	p.A332	0.001	18	0%	21	42.9%	22	50%	-	-	-	HMMPfam_G_glu_transpept
SLC52A1	55065	genome.wustl.edu	37	17	4937879	4937879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001104577.1	-1	validated	p.R8H	0.391	102	0%	153	30.1%	7	57.1%	benign(0.019)	tolerated(0.15)	neutral(0.242)	NULL
ZNF594	84622	genome.wustl.edu	37	17	5085452	5085452	+	Silent	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032530.1	-1	validated	p.R700	0.201	246	0%	272	22.4%	2	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
SPEM1	374768	genome.wustl.edu	37	17	7324691	7324691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_199339.2	+1	provisional	p.A233T	0.000	25	0%	29	37.9%	0	-	benign(0.063)	tolerated(0.44)	neutral(0.017)	NULL
CHD3	1107	genome.wustl.edu	37	17	7807196	7807196	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001005271.2	+1	reviewed	p.A1320T	0.998	210	0%	222	24.8%	77	36.3%	benign(0.001)	-	-	NULL
KCNAB3	9196	genome.wustl.edu	37	17	7827491	7827491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004732.2	-1	reviewed	p.M268I	1.000	241	0.4%	273	30.4%	4	0%	benign(0.002)	tolerated(0.22)	neutral(0.042)	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red
ALOX12B	242	genome.wustl.edu	37	17	7978925	7978925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001139.2	-1	reviewed	p.R548W	0.083	176	0%	161	26.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
ALOX12B	242	genome.wustl.edu	37	17	7979620	7979620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001139.2	-1	reviewed	p.R469W	0.056	80	0%	73	31.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
MYH2	4620	genome.wustl.edu	37	17	10430027	10430027	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001100112.1	-1	reviewed	p.S1359F	1.000	494	0%	447	25.7%	0	-	benign(0.258)	deleterious(0)	deleterious(0.472)	HMMPfam_Myosin_tail_1
CCDC144A	9720	genome.wustl.edu	37	17	16593810	16593810	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014695.1	+1	provisional	p.Q32	0.002	70	0%	82	36.6%	0	-	-	-	-	NULL
MAP2K3	5606	genome.wustl.edu	37	17	21207763	21207763	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_145109.2	+1	reviewed	p.I198M	1.000	360	0%	459	15.5%	65	0%	benign(0.043)	tolerated(0.06)	neutral(0.325)	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
LOC440419	440419	genome.wustl.edu	37	17	25746825	25746825	+	RNA	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	XR_040504.2	+1	model	NULL	0.897	74	0%	89	29.2%	0	-	-	-	-	-
MYO18A	399687	genome.wustl.edu	37	17	27434173	27434173	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_078471.3	-1	validated	p.R1122	0.981	185	0%	179	35.8%	7	42.8%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
TMEM132E	124842	genome.wustl.edu	37	17	32963205	32963205	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_207313.1	+1	provisional	p.S629R	1.000	44	0%	33	36.4%	0	-	possibly_damaging(0.513)	tolerated(0.87)	neutral(0.173)	NULL
RAD51D	5892	genome.wustl.edu	37	17	33428353	33428353	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001142571.1	-1	reviewed	p.S277N	0.974	105	0%	92	27.2%	11	18.1%	benign(0.011)	tolerated(0.5)	neutral(0.011)	HMMSmart_AAA,superfamily_SSF52540
MLLT6	4302	genome.wustl.edu	37	17	36871867	36871869	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005937.3	+1	validated	p.S277in_frame_del	0.967:0.994:0.998	-	-	-	-	-	-	-	-	-	NULL
MLLT6	4302	genome.wustl.edu	37	17	36876025	36876025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005937.3	+1	validated	p.A678T	0.715	46	0%	50	28%	37	45.9%	benign(0.005)	tolerated(0.38)	neutral(0.018)	NULL
KRTAP3-1	83896	genome.wustl.edu	37	17	39165306	39165306	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_031958.1	-1	reviewed	p.R7	0.877	199	0%	245	27.3%	0	-	-	-	-	HMMPfam_Keratin_matx
KRTAP1-5	83895	genome.wustl.edu	37	17	39183040	39183043	+	Frame_Shift_Del	DEL	CTGT	CTGT	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CTGT	CTGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_031957.1	-1	reviewed	p.D122fs	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Keratin_B2
ENSG00000241241	0	genome.wustl.edu	37	17	39258307	39258307	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000440582	-1	known	p.Q52R	0.000	46	0%	53	28.3%	0	-	unknown(0)	tolerated(0.52)	-	PatternScan_TNFR_NGFR_1,HMMPfam_Keratin_B2
KRTAP4-9	100132386	genome.wustl.edu	37	17	39262121	39262121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000391415	+1	known	p.R161C	0.005	89	0%	78	23.1%	0	-	unknown(0)	deleterious(0.02)	-	HMMPfam_Keratin_B2
LEPREL4	10609	genome.wustl.edu	37	17	39964157	39964157	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006455.2	-1	validated	p.H339R	1.000	93	0%	47	23.4%	18	27.7%	probably_damaging(0.956)	deleterious(0.01)	deleterious(0.805)	NULL
NAGLU	4669	genome.wustl.edu	37	17	40695866	40695866	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000263.3	+1	reviewed	p.S614	0.005	45	0%	30	33.3%	34	44.1%	-	-	-	HMMPfam_NAGLU
VPS25	84313	genome.wustl.edu	37	17	40925775	40925775	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032353.2	+1	provisional	p.R26	1.000	74	0%	32	18.8%	106	5.6%	-	-	-	"HMMPfam_ESCRT-II,superfamily_""Winged helix"" DNA-binding domain"
AARSD1	80755	genome.wustl.edu	37	17	41113333	41113334	+	Frame_Shift_Del	DEL	CA	CA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CA	CA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001136042.2	-1	validated	p.V243fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TMEM101	84336	genome.wustl.edu	37	17	42089473	42089473	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032376.2	-1	provisional	p.Y199	0.994	94	0%	100	29%	71	25.3%	-	-	-	NULL
TEX34	124783	genome.wustl.edu	37	17	43333399	43333399	+	Silent	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_152343.2	-1	validated	p.V50	0.003	125	0%	105	35.2%	0	-	-	-	-	NULL
PRR15L	79170	genome.wustl.edu	37	17	46030441	46030459	+	Frame_Shift_Del	DEL	GGGTGTTAAAGTCGCTGTT	GGGTGTTAAAGTCGCTGTT	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	GGGTGTTAAAGTCGCTGTT	GGGTGTTAAAGTCGCTGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024320.2	-1	provisional	p.N48fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.998:1.000:1.000:1.000:1.000:0.773:0.697:0.986:0.987:0.958:0.078:0.044	-	-	-	-	-	-	-	-	-	NULL
GNGT2	2793	genome.wustl.edu	37	17	47284761	47284763	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_031498.2	-1	reviewed	p.K8in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_G-gamma,HMMSmart_SM00224,superfamily_Transducin (heterotrimeric G protein) gamma chain
SPOP	8405	genome.wustl.edu	37	17	47699372	47699372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001007226.1	-1	reviewed	p.E46K	1.000	242	0%	355	40%	22	18.1%	probably_damaging(0.988)	tolerated(0.3)	neutral(0.466)	HMMPfam_MATH,HMMSmart_SM00061,superfamily_TRAF domain-like
CACNA1G	8913	genome.wustl.edu	37	17	48694808	48694808	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_018896.3	+1	validated	p.Q1677	1.000	102	0%	109	27.5%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ABCC3	8714	genome.wustl.edu	37	17	48745245	48745250	+	In_Frame_Del	DEL	GTGTAC	GTGTAC	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	GTGTAC	GTGTAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003786.3	+1	reviewed	p.YV556in_frame_del	0.992:0.995:0.963:1.000:1.000:0.998	-	-	-	-	-	-	-	-	-	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
MED13	9969	genome.wustl.edu	37	17	60042472	60042472	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005121.2	-1	reviewed	p.Q1580R	1.000	266	0%	268	27.6%	10	30%	benign(0.037)	tolerated(0.44)	neutral(0.015)	HMMPfam_TRAP_240kDa
KCNH6	81033	genome.wustl.edu	37	17	61611625	61611625	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_030779.2	+1	reviewed	p.A352T	1.000	99	0%	106	30.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
ERN1	2081	genome.wustl.edu	37	17	62122749	62122749	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001433.3	-1	reviewed	p.R875W	1.000	143	0%	144	32.6%	5	40%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	HMMPfam_Ribonuc_2-5A
HELZ	9931	genome.wustl.edu	37	17	65104745	65104745	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014877.3	-1	validated	p.S1529	0.000	294	0%	369	30.4%	7	71.4%	-	-	-	NULL
ABCA8	10351	genome.wustl.edu	37	17	66871807	66871807	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_007168.2	-1	reviewed	p.E1440Q	1.000	162	0%	192	19.8%	5	0%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR142	350383	genome.wustl.edu	37	17	72368479	72368479	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_181790.1	+1	provisional	p.M377V	1.000	75	0%	67	31.3%	0	-	benign(0.003)	tolerated(0.36)	neutral(0.020)	HMMPfam_7tm_1,superfamily_SSF81321
UNK	85451	genome.wustl.edu	37	17	73805899	73805899	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001080419.1	+1	provisional	p.Q131*	1.000	39	0%	37	21.6%	13	23%	-	-	-	NULL
UNC13D	201294	genome.wustl.edu	37	17	73836363	73836363	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_199242.2	-1	reviewed	p.T267	0.074	81	0%	76	30.3%	6	16.6%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
RNF213	57674	genome.wustl.edu	37	17	78356844	78356844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000508628	+1	known	p.A4682T	0.000	356	0%	372	32.3%	25	36%	possibly_damaging(0.455)	tolerated(0.46)	neutral(0.161)	NULL
ADCYAP1	116	genome.wustl.edu	37	18	905464	905464	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001099733.1	+1	reviewed	p.P26H	1.000	52	0%	65	44.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PTPRM	5797	genome.wustl.edu	37	18	8296437	8296437	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001105244.1	+1	reviewed	p.Y942	0.241	297	0%	540	28.3%	18	0%	-	-	-	HMMPfam_Y_phosphatase,HMMSmart_SM00194,superfamily_(Phosphotyrosine protein) phosphatases II
MIB1	57534	genome.wustl.edu	37	18	19424189	19424189	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020774.2	+1	validated	p.A729V	1.000	297	0%	318	29.6%	16	18.7%	benign(0.071)	tolerated(0.06)	neutral(0.328)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
INO80C	125476	genome.wustl.edu	37	18	33077820	33077820	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001098817.1	-1	validated	p.I7F	0.556	78	0%	72	36.1%	12	41.6%	possibly_damaging(0.733)	deleterious(0)	deleterious(0.713)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42281471	42281471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015559.2	+1	validated	p.R54C	0.918	88	0%	102	26.5%	4	0%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	NULL
SETBP1	26040	genome.wustl.edu	37	18	42532386	42532386	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015559.2	+1	validated	p.D1027	1.000	137	0%	121	26.4%	6	16.6%	-	-	-	HMMPfam_AT_hook,HMMSmart_SM00384
LOXHD1	125336	genome.wustl.edu	37	18	44057674	44057674	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001145472.2	-1	reviewed	p.R1084C	1.000	107	0%	101	29.7%	0	-	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_PLAT,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
CXXC1	30827	genome.wustl.edu	37	18	47809321	47809321	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001101654.1	-1	validated	p.T580M	1.000	101	1%	144	25.7%	105	37.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SHC2	25759	genome.wustl.edu	37	19	438736	438736	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_012435.2	-1	validated	p.S234	0.001	81	1.2%	105	38.1%	22	9%	-	-	-	HMMPfam_PID,HMMSmart_PTB,superfamily_SSF50729
BSG	682	genome.wustl.edu	37	19	580779	580779	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001728.2	+1	reviewed	p.D263	0.000	48	0%	57	35.1%	778	31.3%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
PTBP1	5725	genome.wustl.edu	37	19	804372	804372	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002819.4	+1	reviewed	p.G123	1.000	92	0%	97	27.8%	110	39%	-	-	-	HMMSmart_RRM,superfamily_SSF54928
C19orf6	91304	genome.wustl.edu	37	19	1014350	1014350	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001033026.1	-1	validated	p.R116	0.997	39	0%	40	35%	84	35.7%	-	-	-	HMMPfam_Membralin
SBNO2	22904	genome.wustl.edu	37	19	1149405	1149407	+	In_Frame_Del	DEL	AGA	AGA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014963.2	-1	validated	p.F43in_frame_del	0.010:0.012:0.010	-	-	-	-	-	-	-	-	-	NULL
TLE2	7089	genome.wustl.edu	37	19	3006493	3006493	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003260.4	-1	validated	p.G475	0.762	24	0%	20	20%	42	19%	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
MPND	84954	genome.wustl.edu	37	19	4352912	4352935	+	In_Frame_Del	DEL	GAGGAGGAGGAGTTGCTGATGGAA	GAGGAGGAGGAGTTGCTGATGGAA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	GAGGAGGAGGAGTTGCTGATGGAA	GAGGAGGAGGAGTTGCTGATGGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032868.4	+1	validated	p.ELLMEEEE187in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.997:1.000:1.000:1.000:0.999:0.999:0.998:0.998:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.999	-	-	-	-	-	-	-	-	-	NULL
CHAF1A	10036	genome.wustl.edu	37	19	4429578	4429578	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005483.2	+1	validated	p.A583V	0.986	125	0%	117	24.8%	14	21.4%	possibly_damaging(0.911)	deleterious(0.02)	deleterious(0.746)	NULL
HDGFRP2	84717	genome.wustl.edu	37	19	4499546	4499546	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001001520.1	+1	reviewed	p.R545Q	0.996	91	0%	129	32.6%	85	36.4%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
SAFB	6294	genome.wustl.edu	37	19	5667093	5667093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002967.2	+1	reviewed	p.G791S	0.936	25	0%	31	29%	87	35.6%	unknown(0)	tolerated(0.22)	-	superfamily_SSF54928
PRR22	163154	genome.wustl.edu	37	19	5783604	5783604	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001134316.1	-1	validated	p.L218	0.004	20	0%	24	25%	5	20%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9073256	9073256	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024690.2	-1	validated	p.D4730	0.000	176	0%	193	41.5%	0	-	-	-	-	NULL
OR1M1	125963	genome.wustl.edu	37	19	9204034	9204034	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001004456.1	+1	provisional	p.M38I	0.000	187	0.5%	234	30.3%	0	-	benign(0)	deleterious(0)	neutral(0.445)	superfamily_Family A G protein-coupled receptor-like
TYK2	7297	genome.wustl.edu	37	19	10476340	10476340	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003331.4	-1	reviewed	p.G288	0.000	25	0%	18	38.9%	22	22.7%	-	-	-	NULL
ZNF442	79973	genome.wustl.edu	37	19	12460865	12460865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_030824.2	-1	validated	p.A512T	0.116	263	0.4%	377	24.1%	1	100%	benign(0.029)	deleterious(0.01)	neutral(0.407)	superfamily_SSF57667
CYP4F11	57834	genome.wustl.edu	37	19	16045079	16045079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001128932.1	-1	reviewed	p.R47L	0.000	119	0%	116	25%	0	-	benign(0.029)	tolerated(0.22)	neutral(0.044)	NULL
IFI30	10437	genome.wustl.edu	37	19	18286486	18286486	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006332.3	+1	reviewed	p.D154	0.657	82	0%	86	29.1%	291	16.8%	-	-	-	HMMPfam_GILT
KIAA1683	80726	genome.wustl.edu	37	19	18378170	18378170	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001145304.1	-1	validated	p.K60	0.000	156	0%	163	33.7%	0	-	-	-	-	NULL
UPF1	5976	genome.wustl.edu	37	19	18958581	18958581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002911.3	+1	reviewed	p.V134M	1.000	230	0%	333	28.8%	22	40.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF1_Zn_bind
ZNF507	22847	genome.wustl.edu	37	19	32851497	32851497	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001136156.1	+1	validated	p.R778Q	1.000	338	0%	419	26.7%	8	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LSM14A	26065	genome.wustl.edu	37	19	34712590	34712590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001114093.1	+1	validated	p.G439S	1.000	250	0%	267	31.5%	85	36.4%	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	NULL
KIRREL2	84063	genome.wustl.edu	37	19	36349690	36349690	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_199180.2	+1	validated	p.R149H	0.022	202	0%	138	38.4%	0	-	benign(0.002)	tolerated(0.46)	neutral(0.012)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_C2-set_2,superfamily_Immunoglobulin
WDR87	83889	genome.wustl.edu	37	19	38385624	38385624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_031951.3	-1	provisional	p.S201N	0.010	90	0%	123	30.1%	0	-	possibly_damaging(0.786)	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
NUMBL	9253	genome.wustl.edu	37	19	41174010	41174010	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004756.3	-1	validated	p.P398L	0.994	19	0%	29	37.9%	30	23.3%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
ZNF574	64763	genome.wustl.edu	37	19	42585370	42585370	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_022752.5	+1	validated	p.A871V	0.977	33	0%	36	25%	28	32.1%	probably_damaging(0.965)	tolerated(0.2)	neutral(0.456)	NULL
CIC	23152	genome.wustl.edu	37	19	42794056	42794056	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015125.3	+1	validated	p.D473N	0.998	137	0%	141	34.8%	24	12.5%	possibly_damaging(0.636)	deleterious(0)	deleterious(0.667)	NULL
XRCC1	7515	genome.wustl.edu	37	19	44056353	44056353	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006297.2	-1	reviewed	p.R300*	0.004	142	0%	91	30.8%	42	4.7%	-	-	-	NULL
ZNF283	284349	genome.wustl.edu	37	19	44341227	44341227	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_181845.1	+1	validated	p.V78A	1.000	627	0%	838	25.4%	4	0%	possibly_damaging(0.942)	deleterious(0)	deleterious(0.832)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
SYMPK	8189	genome.wustl.edu	37	19	46330878	46330878	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004819.2	-1	reviewed	p.R691C	1.000	99	0%	124	31.5%	81	41.9%	probably_damaging(0.999)	tolerated(0.18)	deleterious(0.546)	superfamily_ARM repeat
ENSG00000230510	0	genome.wustl.edu	37	19	47030298	47030298	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000414155	-1	known	p.A37G	1.000	106	0%	168	11.9%	1	0%	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	NULL
CYTH2	9266	genome.wustl.edu	37	19	48982432	48982432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017457.4	+1	reviewed	p.R390W	1.000	166	0%	160	28.7%	120	34.1%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	NULL
TRPM4	54795	genome.wustl.edu	37	19	49713496	49713496	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017636.2	+1	provisional	p.S1054	0.994	115	0%	109	28.4%	214	45.3%	-	-	-	NULL
PTH2	113091	genome.wustl.edu	37	19	49926533	49926533	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_178449.3	-1	validated	p.L22V	0.132	10	0.000	9	0.444	0	-	unknown(0)	deleterious(0)	-	NULL
ZNF808	388558	genome.wustl.edu	37	19	53056766	53056766	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001039886.3	+1	validated	p.R199	0.015	504	0%	677	37.4%	2	50%	-	-	-	NULL
ZNF331	55422	genome.wustl.edu	37	19	54081146	54081146	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001079906.1	+1	validated	p.C444	0.993	98	0%	78	39.7%	7	14.2%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MBOAT7	79143	genome.wustl.edu	37	19	54684691	54684691	+	Missense_Mutation	SNP	C	C	T	rs185682596	by1000genomes	TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_024298.3	-1	reviewed	p.R218H	1.000	17	0%	27	25.9%	43	39.5%	possibly_damaging(0.843)	tolerated(0.2)	neutral(0.372)	HMMPfam_MBOAT
TNNT1	7138	genome.wustl.edu	37	19	55658506	55658506	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003283.4	-1	reviewed	p.Q7R	0.993	167	0%	161	29.8%	2	50%	unknown(0)	tolerated(0.32)	-	NULL
NLRP4	147945	genome.wustl.edu	37	19	56379194	56379194	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_134444.4	+1	validated	p.L769P	0.000	265	0%	243	31.7%	0	-	benign(0.004)	tolerated(0.18)	neutral(0.056)	HMMSmart_SM00368,superfamily_RNI-like
ZNF211	10520	genome.wustl.edu	37	19	58153484	58153484	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006385.3	+1	validated	p.K557E	0.970	202	0%	299	30.4%	12	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF606	80095	genome.wustl.edu	37	19	58512672	58512672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_025027.3	-1	validated	p.P6T	0.885	95	0%	142	19.7%	1	0%	unknown(0)	deleterious(0)	-	NULL
FAM110A	83541	genome.wustl.edu	37	20	825658	825658	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001042353.1	+1	validated	p.L71	1.000	10	0%	14	35.7%	25	32%	-	-	-	NULL
SLC4A11	83959	genome.wustl.edu	37	20	3209220	3209220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032034.3	-1	reviewed	p.A792T	1.000	35	0%	45	33.3%	28	21.4%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_HCO3_cotransp
RBBP9	10741	genome.wustl.edu	37	20	18476509	18476509	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006606.2	-1	reviewed	p.C39R	1.000	249	0%	350	28%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DUF1234,superfamily_alpha/beta-Hydrolases
RBM39	9584	genome.wustl.edu	37	20	34302145	34302145	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_184234.1	-1	reviewed	p.T353I	1.000	311	0%	334	32%	164	37.8%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SOGA1	140710	genome.wustl.edu	37	20	35422657	35422657	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000237536	-1	known	p.I1276	0.892	62	1.6%	63	25.4%	1	100%	-	-	-	NULL
CTNNBL1	56259	genome.wustl.edu	37	20	36468564	36468564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_030877.3	+1	reviewed	p.R425Q	1.000	172	0%	146	31.5%	61	27.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
TGM2	7052	genome.wustl.edu	37	20	36770574	36770574	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004613.2	-1	reviewed	p.R296H	0.961	320	0%	280	26.4%	126	3.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Transglut_core,HMMSmart_SM00460,superfamily_Cysteine proteinases
HNF4A	3172	genome.wustl.edu	37	20	43043187	43043187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000457.3	+1	reviewed	p.A178V	0.212	184	0%	193	25.9%	0	-	benign(0)	tolerated(0.34)	neutral(0.023)	superfamily_Nuclear receptor ligand-binding domain
CSE1L	1434	genome.wustl.edu	37	20	47679882	47679885	+	Splice_Site	DEL	GTAA	GTAA	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	GTAA	GTAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001316.2	+1	reviewed	e2+1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
KCNG1	3755	genome.wustl.edu	37	20	49620691	49620691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002237.3	-1	reviewed	p.R476M	0.998	126	0%	127	29.9%	7	42.8%	probably_damaging(0.994)	tolerated(0.06)	deleterious(0.774)	NULL
RTEL1	51750	genome.wustl.edu	37	20	62321689	62321689	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_032957.3	+1	reviewed	p.G770R	0.012	83	0%	73	32.9%	11	18.1%	benign(0.138)	tolerated(0.08)	neutral(0.311)	NULL
UCKL1	54963	genome.wustl.edu	37	20	62572183	62572183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000358711	-1	known	p.A398T	0.982	35	0%	32	18.8%	47	34%	possibly_damaging(0.507)	-	-	NULL
USP25	29761	genome.wustl.edu	37	21	17177486	17177486	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_013396.3	+1	validated	p.A230V	1.000	493	0%	529	25.5%	10	20%	benign(0.131)	tolerated(0.1)	neutral(0.297)	HMMPfam_UCH,superfamily_Cysteine proteinases
NCAM2	4685	genome.wustl.edu	37	21	22696749	22696750	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004540.2	+1	reviewed	p.G225fs	0.999:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_IGc2,HMMPfam_I-set,superfamily_SSF48726
KRTAP6-3	337968	genome.wustl.edu	37	21	31964993	31964993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_181605.3	+1	validated	p.D77N	0.705	327	0%	381	31.2%	0	-	unknown(0)	-	-	NULL
C21orf59	56683	genome.wustl.edu	37	21	33979957	33979957	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_021254.1	-1	predicted	e3+2	1.000	519	0%	542	23.8%	0	-	-	-	-	-
SYNJ1	8867	genome.wustl.edu	37	21	34038359	34038359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003895.3	-1	validated	p.T680I	1.000	151	0%	156	26.9%	1	0%	probably_damaging(0.969)	deleterious(0)	deleterious(0.856)	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
DOPEY2	9980	genome.wustl.edu	37	21	37623571	37623571	+	Missense_Mutation	SNP	A	A	G	rs144310448	by1000genomes	TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005128.2	+1	validated	p.S1704G	1.000	235	0%	262	32.4%	9	33.3%	possibly_damaging(0.458)	tolerated(0.2)	neutral(0.199)	NULL
ERG	2078	genome.wustl.edu	37	21	39764312	39764312	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001136154.1	-1	validated	p.T274M	0.933	95	0%	90	34.4%	13	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
PCNT	5116	genome.wustl.edu	37	21	47850530	47850530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006031.5	+1	reviewed	p.R2675W	0.618	36	0%	36	33.3%	6	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MICAL3	57553	genome.wustl.edu	37	22	18314825	18314827	+	In_Frame_Del	DEL	CTC	CTC	-	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015241.2	-1	provisional	p.E950in_frame_del	0.639:0.995:1.000	-	-	-	-	-	-	-	-	-	NULL
FAM108A5P	729495	genome.wustl.edu	37	22	21024954	21024954	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	XM_002343784.1	-1	model	p.V202M	1.000	103	0%	76	44.7%	0	-	-	-	-	superfamily_alpha/beta-Hydrolases
ZNF70	7621	genome.wustl.edu	37	22	24087148	24087148	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_021916.2	-1	provisional	p.N60	0.000	170	0%	215	34%	1	0%	-	-	-	NULL
ADRBK2	157	genome.wustl.edu	37	22	26091171	26091172	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005160.3	+1	reviewed	p.L385fs	0.996:0.995	-	-	-	-	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
SRRD	402055	genome.wustl.edu	37	22	26884148	26884148	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001013694.2	+1	validated	p.G135E	0.000	333	0.3%	320	29.4%	10	20%	possibly_damaging(0.898)	deleterious(0.02)	deleterious(0.738)	NULL
TFIP11	24144	genome.wustl.edu	37	22	26892176	26892176	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001008697.1	-1	validated	p.R571H	1.000	152	0.7%	160	27.5%	29	34.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TFP11
PICK1	9463	genome.wustl.edu	37	22	38468494	38468494	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001039583.1	+1	reviewed	p.D189	1.000	83	0%	77	29.9%	26	26.9%	-	-	-	HMMPfam_Arfaptin
PLA2G6	8398	genome.wustl.edu	37	22	38536074	38536074	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_003560.2	-1	reviewed	p.V238M	0.765	93	0%	84	45.2%	7	28.5%	probably_damaging(0.992)	tolerated(0.86)	neutral(0.448)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
KCNJ4	3761	genome.wustl.edu	37	22	38822948	38822948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004981.1	-1	reviewed	p.V397A	0.904	13	0%	11	36.4%	0	-	benign(0)	tolerated(1)	-	NULL
CELSR1	9620	genome.wustl.edu	37	22	46794514	46794514	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014246.1	-1	reviewed	p.G1811	1.000	71	0%	49	26.5%	13	23%	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
GRAMD4	23151	genome.wustl.edu	37	22	47064785	47064785	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_015124.2	+1	validated	p.R355H	1.000	214	0%	139	29.5%	32	31.2%	possibly_damaging(0.951)	deleterious(0.03)	deleterious(0.758)	NULL
TUBGCP6	85378	genome.wustl.edu	37	22	50658202	50658202	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020461.3	-1	reviewed	p.S1396G	0.004	45	0%	26	30.8%	19	31.5%	benign(0.003)	tolerated(0.21)	neutral(0.044)	HMMPfam_Spc97_Spc98
TUBGCP6	85378	genome.wustl.edu	37	22	50666396	50666396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_020461.3	-1	reviewed	p.P451L	0.996	97	0%	104	30.8%	8	25%	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_Spc97_Spc98
ARSA	410	genome.wustl.edu	37	22	51065999	51065999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_000487.4	-1	reviewed	p.L68R	0.994	17	0%	22	31.8%	37	35.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfatase,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core
ENSG00000215608	0	genome.wustl.edu	37	GL000212.1	126762	126762	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000400673	+1	known	p.E153K	NULL	107	0%	99	55.6%	5	0%	-	-	-	NULL
ENSG00000198888	0	genome.wustl.edu	37	MT	4224	4224	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000361390	+1	known	p.S306	NULL	13	0.000	4	1.000	3849	67.5%	-	-	-	HMMPfam_NADHdh
KLHL15	80311	genome.wustl.edu	37	X	24024737	24024737	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_030624.2	-1	reviewed	p.Y25F	1.000	134	0%	171	30.4%	0	-	possibly_damaging(0.928)	deleterious(0.02)	deleterious(0.758)	superfamily_BTB/POZ_fold,HMMPfam_BTB
DMD	1756	genome.wustl.edu	37	X	31224764	31224764	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004006.2	-1	reviewed	p.R3195P	1.000	351	0%	453	30.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_efhand_1,superfamily_EF-hand
CXorf59	286464	genome.wustl.edu	37	X	36103594	36103594	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173695.2	+1	validated	p.N194D	0.000	262	0%	265	35.5%	5	100%	possibly_damaging(0.873)	tolerated(0.27)	neutral(0.373)	NULL
CXorf27	25763	genome.wustl.edu	37	X	37850252	37850252	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_012274.1	+1	validated	p.L54I	0.000	205	0%	223	31.8%	0	-	possibly_damaging(0.868)	deleterious(0)	deleterious(0.782)	superfamily_Histone-fold
SYTL5	94122	genome.wustl.edu	37	X	37981397	37981397	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_138780.2	+1	reviewed	p.E590D	1.000	375	0.3%	464	29.5%	0	-	probably_damaging(0.957)	tolerated(0.15)	deleterious(0.641)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
GPR34	2857	genome.wustl.edu	37	X	41554957	41554957	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001097579.1	+1	validated	p.R24H	0.000	147	0.7%	156	29.5%	5	0%	benign(0)	tolerated(0.75)	neutral(0.002)	superfamily_Family A G protein-coupled receptor-like
CFP	5199	genome.wustl.edu	37	X	47486974	47486974	+	Missense_Mutation	SNP	C	C	T	rs34484382		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001145252.1	-1	reviewed	p.R157Q	0.000	56	0%	55	29.1%	3	0%	benign(0.073)	tolerated(0.6)	neutral(0.009)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
SSX3	10214	genome.wustl.edu	37	X	48213516	48213516	+	Silent	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_021014.2	-1	reviewed	p.I66	0.000	546	0%	826	32.8%	0	-	-	-	-	HMMSmart_KRAB,superfamily_Krueppel-associated_box
IQSEC2	23096	genome.wustl.edu	37	X	53265011	53265011	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001111125.1	-1	validated	p.K1152R	1.000	47	0%	58	37.9%	0	-	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
MAGED2	10916	genome.wustl.edu	37	X	54837339	54837339	+	Splice_Site	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	ENST00000375060	+1	known	e4+2	1.000	119	0%	135	25.2%	121	0%	-	-	-	-
OTUD6A	139562	genome.wustl.edu	37	X	69283055	69283055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_207320.1	+1	provisional	p.H227	0.138	45	0%	35	42.9%	0	-	-	-	-	HMMPfam_OTU,superfamily_SSF54001
MED12	9968	genome.wustl.edu	37	X	70343076	70343076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005120.2	+1	reviewed	p.E539D	1.000	227	0%	280	25%	10	10%	benign(0.066)	tolerated(0.24)	neutral(0.042)	NULL
HDX	139324	genome.wustl.edu	37	X	83724391	83724391	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_144657.4	-1	validated	p.A114T	0.397	772	0%	907	31.4%	0	-	benign(0.049)	deleterious(0.03)	neutral(0.367)	NULL
KLHL4	56062	genome.wustl.edu	37	X	86890627	86890627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_057162.2	+1	reviewed	p.H593Y	1.000	335	0%	488	30.7%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
KLHL4	56062	genome.wustl.edu	37	X	86890711	86890711	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_057162.2	+1	reviewed	p.V621I	1.000	269	0%	317	27.8%	0	-	benign(0.103)	deleterious(0)	neutral(0.453)	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
DIAPH2	1730	genome.wustl.edu	37	X	96212929	96212929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_006729.4	+1	reviewed	p.G573R	0.002	229	0%	243	31.7%	2	0%	unknown(0)	deleterious(0.04)	-	NULL
COL4A6	1288	genome.wustl.edu	37	X	107434698	107434698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001847.2	-1	reviewed	p.R417C	0.846	235	0%	248	28.2%	3	0%	unknown(0)	deleterious(0.01)	-	HMMPfam_Collagen
NKRF	55922	genome.wustl.edu	37	X	118726439	118726439	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_017544.3	-1	reviewed	p.A8T	1.000	441	0%	478	30.5%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TFDP3	51270	genome.wustl.edu	37	X	132351158	132351158	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_016521.2	-1	reviewed	p.G377D	1.000	125	0%	89	22.5%	0	-	probably_damaging(0.96)	tolerated(0.11)	deleterious(0.675)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135863011	135863011	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_004840.2	-1	reviewed	p.L11I	1.000	273	0%	270	31.1%	1	0%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
RBMX	27316	genome.wustl.edu	37	X	135956318	135956318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002139.3	-1	reviewed	p.G387S	1.000	142	0%	142	22.5%	132	0%	unknown(0)	deleterious(0.03)	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140992754	140992754	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005462.4	+1	reviewed	e1-2	0.058	230	0%	222	27%	0	-	-	-	-	-
SLITRK4	139065	genome.wustl.edu	37	X	142718107	142718107	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_173078.3	-1	reviewed	p.R273H	0.996	161	0%	155	26.5%	0	-	benign(0.347)	tolerated(0.16)	neutral(0.169)	NULL
AFF2	2334	genome.wustl.edu	37	X	148068912	148068912	+	Silent	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_002025.3	+1	reviewed	p.P1213	0.223	218	0%	308	35.7%	0	-	-	-	-	HMMPfam_AF-4
MAMLD1	10046	genome.wustl.edu	37	X	149639660	149639660	+	Silent	SNP	G	G	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_005491.3	+1	reviewed	p.Q605	0.998	96	0%	107	30.8%	1	0%	-	-	-	NULL
ZNF185	7739	genome.wustl.edu	37	X	152083325	152083325	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_007150.3	+1	reviewed	p.K36E	1.000	90	0%	133	17.3%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
FLNA	2316	genome.wustl.edu	37	X	153577918	153577918	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_001110556.1	-1	reviewed	p.S2523T	0.981	114	0%	109	20.2%	915	6.3%	benign(0)	tolerated(0.16)	neutral(0.059)	NULL
UBL4A	8266	genome.wustl.edu	37	X	153714111	153714111	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014235.3	-1	provisional	p.R121M	1.000	165	0%	112	33.9%	11	0%	possibly_damaging(0.924)	deleterious(0)	deleterious(0.818)	NULL
UBL4A	8266	genome.wustl.edu	37	X	153714191	153714191	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A0ZO-01A-11D-A122-09	TCGA-D1-A0ZO-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	e9b9c153-1487-41a6-8443-2dff1d0bf16e	aea746b2-c02f-44d5-9709-c77c7a57adef	NM_014235.3	-1	provisional	p.Q94H	0.000	72	0%	66	12.1%	8	12.5%	benign(0)	tolerated(0.14)	neutral(0.249)	NULL
