Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PLCH2	9651	genome.wustl.edu	37	1	2430589	2430589	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014638.2	+1	provisional	p.R834H	1.000	67	0%	66	27.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
TP73	7161	genome.wustl.edu	37	1	3647612	3647612	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001126242.1	+1	reviewed	p.R391*	0.267	31	0%	25	48%	10	60%	-	-	-	NULL
GPR153	387509	genome.wustl.edu	37	1	6311467	6311467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_207370.2	-1	validated	p.R304W	1.000	43	0%	42	40.5%	19	57.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF81321
PLEKHG5	57449	genome.wustl.edu	37	1	6556583	6556583	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_198681.2	-1	reviewed	p.P38	0.298	113	0%	114	22.8%	4	25%	-	-	-	NULL
RERE	473	genome.wustl.edu	37	1	8482823	8482825	+	In_Frame_Del	DEL	GAA	GAA	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001042681.1	-1	reviewed	p.F416in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding
PLEKHM2	23207	genome.wustl.edu	37	1	16055611	16055611	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015164.2	+1	validated	p.Q667	1.000	147	0%	117	13.7%	43	23.2%	-	-	-	NULL
RSG1	79363	genome.wustl.edu	37	1	16560219	16560219	+	Nonstop_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000434014	-1	known	p.*24R	0.464	48	0%	48	14.6%	9	33.3%	unknown(0)	-	-	NULL
IFFO2	126917	genome.wustl.edu	37	1	19244897	19244897	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001136265.1	-1	validated	p.A308T	1.000	189	0%	220	33.2%	11	54.5%	probably_damaging(0.995)	tolerated(0.13)	deleterious(0.710)	HMMPfam_Filament
EXTL1	2134	genome.wustl.edu	37	1	26349521	26349521	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004455.2	+1	reviewed	p.P128	0.000	95	0%	64	17.2%	0	-	-	-	-	HMMPfam_Exostosin
PUM1	9698	genome.wustl.edu	37	1	31454254	31454254	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001020658.1	-1	reviewed	e7-2	1.000	71	0%	84	14.3%	3	33.3%	-	-	-	-
MPL	4352	genome.wustl.edu	37	1	43804289	43804289	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005373.2	+1	reviewed	p.D97Y	0.999	169	0%	123	13%	0	-	possibly_damaging(0.497)	tolerated(0.07)	deleterious(0.485)	superfamily_Fibronectin type III,HMMPfam_EpoR_lig-bind
SZT2	23334	genome.wustl.edu	37	1	43890851	43890851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015284.2	+1	predicted	p.P31L	1.000	199	0%	160	26.9%	4	100%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
KLF17	128209	genome.wustl.edu	37	1	44595294	44595294	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_173484.3	+1	validated	p.M117I	0.000	106	0%	79	27.8%	0	-	benign(0)	tolerated(0.37)	neutral(0.019)	NULL
FAAH	2166	genome.wustl.edu	37	1	46879175	46879175	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001441.2	+1	reviewed	p.W556*	1.000	241	0%	229	14.4%	43	23.2%	-	-	-	HMMPfam_Amidase,superfamily_Amidase_sig_enz
DMBX1	127343	genome.wustl.edu	37	1	46976789	46976789	+	Silent	SNP	T	T	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_147192.2	+1	reviewed	p.A177	0.873	31	0%	28	32.1%	0	-	-	-	-	NULL
OMA1	115209	genome.wustl.edu	37	1	59004899	59004899	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_145243.3	-1	provisional	p.S23Y	0.001	80	0%	68	26.5%	8	25%	benign(0.267)	deleterious(0)	deleterious(0.473)	NULL
KANK4	163782	genome.wustl.edu	37	1	62734001	62734001	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_181712.4	-1	validated	p.E730V	0.000	118	0%	97	26.8%	6	0%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
DEPDC1	55635	genome.wustl.edu	37	1	68960179	68960179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001114120.1	-1	validated	p.H83R	1.000	273	0%	223	27.8%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	HMMPfam_DEP,HMMSmart_DEP,superfamily_SSF46785
TTLL7	79739	genome.wustl.edu	37	1	84356121	84356121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_024686.4	-1	validated	p.R751H	1.000	124	0%	142	18.3%	4	25%	possibly_damaging(0.697)	tolerated(0.11)	deleterious(0.522)	NULL
GBP2	2634	genome.wustl.edu	37	1	89578223	89578223	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004120.3	-1	reviewed	p.R432C	0.005	301	0.3%	280	13.6%	65	6.1%	benign(0.006)	tolerated(0.23)	neutral(0.042)	HMMPfam_GBP_C,superfamily_GBP
SYPL2	284612	genome.wustl.edu	37	1	110019440	110019440	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001040709.1	+1	validated	p.E99	0.006	266	0%	218	23.9%	2	0%	-	-	-	HMMPfam_MARVEL
CHIA	27159	genome.wustl.edu	37	1	111854924	111854924	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_201653.2	+1	validated	p.Y56	0.992	202	0%	208	10.1%	0	-	-	-	-	HMMPfam_Glyco_hydro_18,HMMSmart_SM00636,superfamily_(Trans)glycosidases
FAM46C	54855	genome.wustl.edu	37	1	118166310	118166310	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_017709.3	+1	validated	p.F274L	1.000	153	0%	132	15.2%	7	42.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1693
NBPF9	400818	genome.wustl.edu	37	1	144822044	144822044	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001037675.2	+1	predicted	p.H339R	0.003	524	0%	518	7.7%	5	0%	-	-	-	NULL
FLG	2312	genome.wustl.edu	37	1	152287048	152287048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002016.1	-1	reviewed	p.S105I	0.000	619	0%	633	18.6%	0	-	probably_damaging(0.991)	tolerated(0.16)	deleterious(0.504)	NULL
CRNN	49860	genome.wustl.edu	37	1	152382484	152382484	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016190.2	-1	reviewed	p.V358	0.022	266	0%	259	28.6%	15	53.3%	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155327509	155327509	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018489.2	-1	reviewed	p.R2276Q	1.000	471	0%	451	18%	8	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FCRL3	115352	genome.wustl.edu	37	1	157660172	157660172	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_052939.3	-1	reviewed	p.S521	0.000	140	0%	136	22.8%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCRL3	115352	genome.wustl.edu	37	1	157665996	157665996	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_052939.3	-1	reviewed	p.W322*	1.000	195	0%	211	11.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ZBTB37	84614	genome.wustl.edu	37	1	173839547	173839547	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001122770.1	+1	provisional	p.S62P	1.000	177	0%	192	19.8%	1	100%	probably_damaging(0.999)	tolerated(0.11)	deleterious(0.762)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
SERPINC1	462	genome.wustl.edu	37	1	173878963	173878963	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000488.3	-1	reviewed	p.R294C	0.001	83	0%	122	12.3%	0	-	possibly_damaging(0.912)	tolerated(0.07)	deleterious(0.682)	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin
RC3H1	149041	genome.wustl.edu	37	1	173930366	173930366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_172071.2	-1	validated	p.R740Q	0.978	311	12.5%	346	36.7%	6	33.3%	benign(0.404)	tolerated(0.26)	neutral(0.164)	NULL
CACNA1E	777	genome.wustl.edu	37	1	181702838	181702838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000721.2	+1	reviewed	p.V1072I	0.891	39	0%	31	29%	0	-	possibly_damaging(0.649)	tolerated(0.44)	neutral(0.241)	NULL
TROVE2	6738	genome.wustl.edu	37	1	193051375	193051375	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004600.5	+1	validated	p.P421	0.931	296	0%	307	10.4%	8	37.5%	-	-	-	NULL
RABIF	5877	genome.wustl.edu	37	1	202850313	202850313	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002871.3	-1	provisional	p.S55	0.000	128	0%	109	19.3%	26	19.2%	-	-	-	HMMPfam_Mss4,superfamily_Mss4-like
FMOD	2331	genome.wustl.edu	37	1	203316893	203316893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002023.3	-1	reviewed	p.R169Q	1.000	135	0%	127	15%	45	4.4%	possibly_damaging(0.902)	deleterious(0.04)	deleterious(0.706)	superfamily_SSF52058
TAF1A	9015	genome.wustl.edu	37	1	222757512	222757512	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005681.2	-1	reviewed	p.T83	0.002	282	0%	314	10.8%	3	33.3%	-	-	-	NULL
DISP1	84976	genome.wustl.edu	37	1	223177842	223177842	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032890.2	+1	reviewed	p.N1035D	0.994	288	0.3%	304	10.5%	6	33.3%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Patched,superfamily_SSF82866
LBR	3930	genome.wustl.edu	37	1	225600156	225600156	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002296.2	-1	reviewed	p.G362R	1.000	107	0%	110	23.6%	23	8.6%	probably_damaging(0.975)	deleterious(0.02)	deleterious(0.800)	HMMPfam_ERG4_ERG24,PatternScan_STEROL_REDUCT_1
KIF26B	55083	genome.wustl.edu	37	1	245770996	245770996	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018012.3	+1	provisional	p.V534A	1.000	242	0%	197	15.7%	9	33.3%	possibly_damaging(0.942)	deleterious(0.02)	deleterious(0.770)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
OR2L3	391192	genome.wustl.edu	37	1	248224797	248224798	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001004687.1	+1	provisional	p.L273fs	0.000:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
SMC6	79677	genome.wustl.edu	37	2	17898377	17898377	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001142286.1	-1	validated	p.R387*	0.968	519	0%	482	13.9%	7	0%	-	-	-	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
IFT172	26160	genome.wustl.edu	37	2	27669181	27669181	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015662.1	-1	validated	p.H1567Q	1.000	196	0%	178	12.4%	63	22.2%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
FAM179A	165186	genome.wustl.edu	37	2	29222316	29222316	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_199280.2	+1	validated	p.L137	0.954	37	0%	35	11.4%	2	50%	-	-	-	NULL
C2orf71	388939	genome.wustl.edu	37	2	29294889	29294889	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001029883.1	-1	provisional	p.L747	0.004	126	0%	122	17.2%	0	-	-	-	-	NULL
PLEKHH2	130271	genome.wustl.edu	37	2	43937648	43937648	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_172069.3	+1	validated	p.P745	1.000	261	0%	247	15.4%	2	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
VPS54	51542	genome.wustl.edu	37	2	64211063	64211063	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016516.2	-1	reviewed	p.V24E	1.000	147	0%	139	32.4%	4	75%	benign(0.032)	tolerated(0.76)	neutral(0.003)	NULL
TET3	200424	genome.wustl.edu	37	2	74274489	74274489	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_144993.1	+1	provisional	p.E347G	0.916	72	0%	52	11.5%	1	0%	possibly_damaging(0.797)	deleterious(0.01)	deleterious(0.705)	NULL
IGKV1D-8	28904	genome.wustl.edu	37	2	90260230	90260230	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000471857	+1	known	p.Q111	0.923	676	0.1%	606	13.2%	0	-	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
ANKRD23	200539	genome.wustl.edu	37	2	97508103	97508105	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_144994.7	-1	reviewed	p.K58in_frame_del	0.844:0.858:0.829	-	-	-	-	-	-	-	-	-	NULL
LIPT1	51601	genome.wustl.edu	37	2	99778981	99778981	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015929.3	+1	reviewed	p.T187	0.000	241	0%	228	25%	9	33.3%	-	-	-	NULL
ST6GAL2	84620	genome.wustl.edu	37	2	107423223	107423223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001142351.1	-1	validated	p.G501W	0.555	107	0%	98	12.2%	1	0%	possibly_damaging(0.776)	deleterious(0.01)	deleterious(0.695)	HMMPfam_Glyco_transf_29
IL36G	56300	genome.wustl.edu	37	2	113742477	113742477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_019618.2	+1	reviewed	p.R121C	0.881	191	0%	196	28.1%	1	100%	benign(0.047)	deleterious(0)	neutral(0.448)	HMMPfam_IL1,HMMSmart_SM00125,superfamily_Cytokine
MAP3K2	10746	genome.wustl.edu	37	2	128066306	128066306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006609.3	-1	reviewed	p.V497I	1.000	209	0%	207	13.5%	6	33.3%	possibly_damaging(0.643)	tolerated(0.23)	neutral(0.267)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PROC	5624	genome.wustl.edu	37	2	128186211	128186211	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000312.3	+1	reviewed	p.V359I	0.000	37	0%	40	30%	21	33.3%	benign(0.002)	tolerated(1)	-	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys
POTEF	728378	genome.wustl.edu	37	2	130832835	130832835	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001099771.2	-1	validated	p.R737H	1.000	210	0.5%	195	21.5%	1	100%	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
NCKAP5	344148	genome.wustl.edu	37	2	133540096	133540096	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_207363.2	-1	validated	p.R1430G	0.034	93	0%	105	31.4%	0	-	benign(0.09)	deleterious(0)	neutral(0.451)	NULL
ZRANB3	84083	genome.wustl.edu	37	2	135988147	135988147	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032143.2	-1	provisional	p.C630	1.000	309	0%	320	10%	3	66.6%	-	-	-	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_NZF domain
TNFAIP6	7130	genome.wustl.edu	37	2	152236046	152236049	+	Frame_Shift_Del	DEL	AAAA	AAAA	-	rs71403164	byCluster	TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	AAAA	AAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_007115.2	+1	reviewed	p.*278fs	0.961:0.953	-	-	-	-	-	-	-	-	-	NULL
NEB	4703	genome.wustl.edu	37	2	152544187	152544187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004543.4	-1	reviewed	p.A826T	0.981	475	0%	465	12.7%	0	-	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	HMMPfam_Nebulin,HMMSmart_SM00227
SCN7A	6332	genome.wustl.edu	37	2	167322299	167322299	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002976.2	-1	validated	p.Y288C	0.004	282	0%	259	28.2%	0	-	benign(0.411)	tolerated(0.12)	neutral(0.394)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	168100553	168100553	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_152381.4	+1	validated	p.I884N	0.999	85	0%	58	24.1%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_Xin
B3GALT1	8708	genome.wustl.edu	37	2	168726345	168726345	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020981.2	+1	reviewed	p.V266I	1.000	133	0%	114	14.9%	0	-	probably_damaging(0.984)	tolerated(0.09)	deleterious(0.727)	HMMPfam_Galactosyl_T
MYO3B	140469	genome.wustl.edu	37	2	171358358	171358358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_138995.3	+1	validated	p.A1118V	1.000	264	0%	225	10.7%	1	0%	benign(0.004)	tolerated(0.38)	neutral(0.018)	NULL
HOXD3	3232	genome.wustl.edu	37	2	177036865	177036866	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006898.4	+1	reviewed	p.D388fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179410152	179410152	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_133378.4	-1	reviewed	p.A29327V	0.004	192	0%	210	15.7%	0	-	-	-	-	NULL
ITGA4	3676	genome.wustl.edu	37	2	182363436	182363436	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000885.4	+1	reviewed	p.V543M	0.277	267	0%	324	11.1%	1	0%	benign(0.004)	tolerated(0.11)	neutral(0.272)	HMMPfam_Integrin_alpha2,superfamily_Integrin domains
CCDC150	284992	genome.wustl.edu	37	2	197596875	197596875	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001080539.1	+1	provisional	p.K1063R	1.000	206	0%	216	27.3%	2	50%	benign(0.007)	tolerated(0.16)	neutral(0.059)	NULL
NDUFB3	4709	genome.wustl.edu	37	2	201950287	201950287	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002491.2	+1	validated	p.V82	0.403	505	0%	537	30.5%	125	45.6%	-	-	-	HMMPfam_NDUF_B12
CASP8	841	genome.wustl.edu	37	2	202149906	202149906	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000444430	+1	known	p.E170K	0.000	122	0%	109	11%	33	18.1%	-	-	-	HMMPfam_Peptidase_C14,HMMSmart_SM00115,superfamily_Caspase-like
UNC80	285175	genome.wustl.edu	37	2	210685260	210685260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032504.1	+1	validated	p.G730R	1.000	264	0%	248	20.2%	0	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
ATIC	471	genome.wustl.edu	37	2	216200802	216200802	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000426233	+1	known	p.D20N	1.000	220	0%	215	14%	48	10.4%	-	-	-	HMMPfam_AICARFT_IMPCHas,HMMSmart_SM00798,superfamily_AICAR transformylase domain of bifunctional purine biosynthesis enzyme ATIC
PAX3	5077	genome.wustl.edu	37	2	223161771	223161771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_181459.2	-1	reviewed	p.V83I	1.000	48	0%	55	20%	0	-	possibly_damaging(0.761)	deleterious(0)	deleterious(0.726)	HMMPfam_PAX,HMMSmart_SM00351,PatternScan_PAIRED_1,superfamily_Homeodomain-like
DOCK10	55619	genome.wustl.edu	37	2	225635040	225635040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014689.2	-1	validated	p.A2111V	1.000	264	0%	252	11.5%	7	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ded_cyto
COL4A3	1285	genome.wustl.edu	37	2	228173956	228173956	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000091.3	+1	reviewed	p.A1559	0.023	195	0%	205	15.6%	0	-	-	-	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
MFF	56947	genome.wustl.edu	37	2	228207512	228207512	+	Silent	SNP	A	A	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000436791	+1	known	p.T153S	1.000	159	0%	182	25.3%	9	0%	-	-	-	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233660917	233660918	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001103147.1	+1	reviewed	p.Q563fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF
INPP5D	3635	genome.wustl.edu	37	2	234107008	234107008	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000359570	+1	known	p.R987	0.177	49	0%	38	34.2%	7	28.5%	-	-	-	NULL
COL6A3	1293	genome.wustl.edu	37	2	238303525	238303525	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004369.3	-1	reviewed	p.A138	0.020	173	0%	153	11.8%	1	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
LRRFIP1	9208	genome.wustl.edu	37	2	238672228	238672228	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001137552.1	+1	validated	p.N624	0.000	428	0%	432	12.7%	49	30.6%	-	-	-	NULL
ITPR1	3708	genome.wustl.edu	37	3	4808357	4808357	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001099952.2	+1	reviewed	p.D1848	0.988	206	0%	211	13.3%	7	14.2%	-	-	-	NULL
SLC6A6	6533	genome.wustl.edu	37	3	14520022	14520022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001134367.1	+1	validated	p.V466I	1.000	904	0%	898	11.6%	29	34.4%	possibly_damaging(0.582)	tolerated(0.77)	neutral(0.201)	HMMPfam_SNF
TGFBR2	7048	genome.wustl.edu	37	3	30713718	30713718	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001024847.2	+1	reviewed	p.R373H	0.995	110	0%	89	29.2%	58	13.7%	possibly_damaging(0.66)	tolerated(0.14)	deleterious(0.483)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PTPN23	25930	genome.wustl.edu	37	3	47448222	47448222	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015466.2	+1	validated	p.Q263	1.000	95	0%	121	14.9%	13	7.6%	-	-	-	HMMPfam_BRO1
SMARCC1	6599	genome.wustl.edu	37	3	47651716	47651716	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003074.3	-1	validated	p.Q961	1.000	562	0%	565	12%	135	20.7%	-	-	-	NULL
TLR9	54106	genome.wustl.edu	37	3	52256366	52256366	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_017442.2	-1	reviewed	p.Q656*	0.002	39	0%	49	16.3%	0	-	-	-	-	superfamily_L domain-like
FAM3D	131177	genome.wustl.edu	37	3	58620097	58620098	+	Splice_Site	INS	-	-	AG	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_138805.2	-1	validated	e9-2	1.000:0.865	-	-	-	-	-	-	-	-	-	-
CNTN3	5067	genome.wustl.edu	37	3	74344350	74344350	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020872.1	-1	validated	p.S813	0.998	216	0%	215	28.4%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
GBE1	2632	genome.wustl.edu	37	3	81754676	81754676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000264326	-1	known	p.V78I	0.040	212	0%	272	12.9%	13	7.6%	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_CBM_48,superfamily_E set domains
VGLL3	389136	genome.wustl.edu	37	3	87027908	87027908	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016206.2	-1	validated	p.V57	1.000	136	0%	126	31.7%	0	-	-	-	-	NULL
GCET2	257144	genome.wustl.edu	37	3	111842310	111842310	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_152785.3	-1	reviewed	p.H177Y	0.000	244	0%	197	13.7%	2	0%	benign(0.002)	tolerated(0.7)	neutral(0.002)	NULL
BOC	91653	genome.wustl.edu	37	3	113004237	113004237	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_033254.2	+1	validated	p.P994	0.005	56	0%	61	14.8%	27	11.1%	-	-	-	NULL
SPICE1	152185	genome.wustl.edu	37	3	113175984	113175984	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_144718.3	-1	validated	p.D552	0.571	151	0%	129	26.4%	6	66.6%	-	-	-	NULL
ILDR1	286676	genome.wustl.edu	37	3	121720592	121720592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_175924.2	-1	provisional	p.H167Y	1.000	197	0%	220	23.2%	22	22.7%	benign(0.039)	deleterious(0.01)	neutral(0.408)	HMMPfam_LSR
CPNE4	131034	genome.wustl.edu	37	3	131418796	131418796	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_130808.1	-1	reviewed	p.S130Y	1.000	163	0%	171	29.2%	0	-	benign(0.133)	deleterious(0.04)	neutral(0.360)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
KY	339855	genome.wustl.edu	37	3	134339693	134339693	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_178554.4	-1	validated	p.A164T	0.719	155	0%	135	32.6%	0	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	NULL
DBR1	51163	genome.wustl.edu	37	3	137886125	137886125	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016216.2	-1	validated	p.F171S	1.000	78	0%	61	37.7%	4	50%	possibly_damaging(0.9)	deleterious(0)	deleterious(0.801)	HMMPfam_Metallophos,superfamily_Metallo-dependent phosphatases
ACPL2	92370	genome.wustl.edu	37	3	141011336	141011336	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001037172.1	+1	validated	p.S244	0.830	116	0%	120	11.7%	9	0%	-	-	-	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like
GYG1	2992	genome.wustl.edu	37	3	148714147	148714147	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004130.3	+1	validated	p.D68N	1.000	367	0%	323	29.4%	31	29%	benign(0.005)	tolerated(0.29)	neutral(0.029)	HMMPfam_Glyco_transf_8,superfamily_Nucleotide-diphospho-sugar transferases
SHOX2	6474	genome.wustl.edu	37	3	157823754	157823754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006884.3	-1	reviewed	p.K20N	1.000	20	0%	21	28.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164906156	164906156	+	Silent	SNP	T	T	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014926.2	-1	validated	p.A821	0.001	192	0%	185	27%	0	-	-	-	-	NULL
NCEH1	57552	genome.wustl.edu	37	3	172351527	172351527	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020792.4	-1	validated	p.A354V	0.414	173	0%	182	15.4%	19	15.7%	benign(0)	tolerated(1)	-	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
PIK3CA	5290	genome.wustl.edu	37	3	178916876	178916876	+	Missense_Mutation	SNP	G	G	A	rs121913287		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006218.2	+1	reviewed	p.R88Q	1.000	176	0%	156	25.6%	1	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B
ECE2	9718	genome.wustl.edu	37	3	184009181	184009181	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014693.3	+1	validated	p.A810V	0.993	116	0%	117	17.9%	0	-	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"
MAP3K13	9175	genome.wustl.edu	37	3	185169166	185169169	+	Frame_Shift_Del	DEL	ACTT	ACTT	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	ACTT	ACTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004721.3	+1	reviewed	p.Y422fs	1.000:1.000:0.900:1.000	-	-	-	-	-	-	-	-	-	superfamily_Protein kinase-like (PK-like)
HRG	3273	genome.wustl.edu	37	3	186390614	186390615	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000412.2	+1	reviewed	p.V200fs	0.500:0.525	-	-	-	-	-	-	-	-	-	HMMSmart_SM00043,superfamily_Cystatin/monellin
LPP	4026	genome.wustl.edu	37	3	188426172	188426172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005578.3	+1	reviewed	p.E411K	1.000	220	0%	197	26.9%	7	14.2%	possibly_damaging(0.767)	deleterious(0.03)	deleterious(0.649)	NULL
FAM193A	8603	genome.wustl.edu	37	4	2696715	2696715	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003704.3	+1	validated	p.Y754	0.137	81	0%	78	16.7%	27	25.9%	-	-	-	NULL
SH3TC1	54436	genome.wustl.edu	37	4	8237273	8237275	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018986.3	+1	validated	p.F1133in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_TPR-like
LOC650293	650293	genome.wustl.edu	37	4	8951847	8951847	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001040071.1	+1	provisional	p.Q124R	0.000	522	0%	476	14.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PGM2	55276	genome.wustl.edu	37	4	37836241	37836241	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018290.3	+1	validated	p.G84A	1.000	142	0%	129	20.2%	14	42.8%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_PGM_PMM_I,superfamily_A-D-PHexomutase_a/b/a-I/II/III
FRAS1	80144	genome.wustl.edu	37	4	79238600	79238600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_025074.6	+1	reviewed	p.R633H	0.952	264	0%	212	13.7%	1	0%	benign(0.02)	tolerated(0.22)	neutral(0.043)	HMMSmart_SM00261,superfamily_Growth factor receptor domain
FRAS1	80144	genome.wustl.edu	37	4	79420941	79420941	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_025074.6	+1	reviewed	p.A3060V	0.982	245	0%	254	19.3%	3	0%	benign(0.029)	tolerated(0.46)	neutral(0.013)	HMMPfam_Calx-beta,HMMSmart_SM00237
PHF17	79960	genome.wustl.edu	37	4	129783097	129783097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_199320.2	+1	validated	p.R407Q	1.000	155	0%	117	13.7%	5	0%	benign(0)	tolerated(0.84)	neutral(0.001)	NULL
OTUD4	54726	genome.wustl.edu	37	4	146059564	146059564	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001102653.1	-1	reviewed	p.P723L	0.874	227	0.4%	190	12.6%	25	28%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
TLR2	7097	genome.wustl.edu	37	4	154626316	154626316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003264.3	+1	reviewed	p.R753W	1.000	162	0%	161	11.2%	6	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
PLRG1	5356	genome.wustl.edu	37	4	155462021	155462021	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000506627	-1	known	p.A23V	0.597	242	0%	220	15.5%	51	11.7%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ODZ3	55714	genome.wustl.edu	37	4	183245382	183245382	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001080477.1	+1	provisional	p.E70G	1.000	167	0%	185	18.9%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Ten_N
ODZ3	55714	genome.wustl.edu	37	4	183710518	183710518	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001080477.1	+1	provisional	p.T1859	0.000	230	0%	249	30.1%	0	-	-	-	-	HMMPfam_RHS_repeat
SORBS2	8470	genome.wustl.edu	37	4	186545010	186545010	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_021069.4	-1	reviewed	p.K521E	0.999	148	0%	144	18.1%	2	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
CEP72	55722	genome.wustl.edu	37	5	637731	637731	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018140.3	+1	reviewed	p.R335Q	0.000	114	0%	101	36.6%	2	0%	possibly_damaging(0.949)	deleterious(0)	deleterious(0.838)	NULL
BRD9	65980	genome.wustl.edu	37	5	879940	879940	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_023924.4	-1	validated	p.T273	0.003	454	0%	405	9.6%	18	11.1%	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13867994	13867994	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001369.2	-1	reviewed	p.G1314	0.094	237	0.4%	226	25.7%	1	100%	-	-	-	superfamily_Spectrin
PTGER4	5734	genome.wustl.edu	37	5	40692070	40692070	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000958.2	+1	reviewed	p.G353R	0.987	73	0%	74	16.2%	1	0%	benign(0.047)	tolerated(0.47)	neutral(0.014)	superfamily_SSF81321
PDE4D	5144	genome.wustl.edu	37	5	58511763	58511763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001104631.1	-1	validated	p.R163W	1.000	139	0%	124	21%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
UTP15	84135	genome.wustl.edu	37	5	72874921	72874921	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032175.2	+1	validated	p.A409V	1.000	366	0%	394	13.7%	2	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_U3_snoRNA_C
ANKRD31	256006	genome.wustl.edu	37	5	74450170	74450170	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000274361	-1	known	p.V570L	1.000	216	0%	150	35.3%	0	-	probably_damaging(0.988)	deleterious(0.04)	deleterious(0.786)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
FEM1C	56929	genome.wustl.edu	37	5	114860915	114860915	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020177.2	-1	validated	p.P315H	1.000	198	0%	215	10.7%	13	7.6%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	superfamily_ANK
CATSPER3	347732	genome.wustl.edu	37	5	134343745	134343745	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_178019.2	+1	validated	p.C197	0.961	291	0%	265	12.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
SLC23A1	9963	genome.wustl.edu	37	5	138715929	138715929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000448329	-1	known	p.P168S	0.996	143	0%	132	18.9%	1	0%	-	-	-	NULL
ENSG00000228672	0	genome.wustl.edu	37	5	138728663	138728663	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000434752	-1	known	p.D142G	0.001	10	0.000	9	0.444	2	0%	possibly_damaging(0.832)	tolerated(0.47)	neutral(0.328)	NULL
TMEM173	340061	genome.wustl.edu	37	5	138855863	138855863	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_198282.2	-1	validated	p.R375C	0.797	182	0%	146	24%	164	44.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PCDHA1	56147	genome.wustl.edu	37	5	140168136	140168136	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018900.2	+1	reviewed	p.R754K	0.964	104	0%	119	21%	0	-	benign(0.041)	tolerated(0.15)	neutral(0.243)	NULL
PCDHGB7	56099	genome.wustl.edu	37	5	140798879	140798879	+	Missense_Mutation	SNP	G	G	A	rs35892780	byCluster	TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018927.2	+1	reviewed	p.G485S	0.990	42	0%	49	44.9%	17	76.4%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC5	56097	genome.wustl.edu	37	5	140871422	140871422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032407.1	+1	reviewed	p.R872H	0.001	27	0%	26	26.9%	0	-	-	-	-	NULL
FCHSD1	89848	genome.wustl.edu	37	5	141027590	141027590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_033449.1	-1	provisional	p.A217V	1.000	191	0%	183	31.1%	11	54.5%	benign(0.418)	deleterious(0.01)	deleterious(0.541)	NULL
NDST1	3340	genome.wustl.edu	37	5	149919738	149919738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001543.4	+1	validated	p.T554M	1.000	127	0%	103	16.5%	20	35%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RNF44	22838	genome.wustl.edu	37	5	175958573	175958573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014901.4	-1	reviewed	p.F119S	1.000	75	0%	70	31.4%	45	33.3%	benign(0.268)	deleterious(0)	deleterious(0.473)	NULL
DSP	1832	genome.wustl.edu	37	6	7580345	7580345	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004415.2	+1	reviewed	p.R1308W	0.000	83	0%	76	26.3%	58	10.3%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	NULL
HIVEP1	3096	genome.wustl.edu	37	6	12123362	12123362	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002114.2	+1	validated	p.M1112V	0.000	131	0%	122	10.7%	3	33.3%	benign(0)	tolerated(0.42)	neutral(0.014)	NULL
SOX4	6659	genome.wustl.edu	37	6	21595042	21595042	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003107.2	+1	reviewed	p.L93	1.000	46	0%	30	16.7%	231	20.3%	-	-	-	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box
GMNN	51053	genome.wustl.edu	37	6	24785955	24785955	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015895.3	+1	validated	p.V186	0.012	175	0%	182	12.1%	31	38.7%	-	-	-	HMMPfam_Geminin
SCAND3	114821	genome.wustl.edu	37	6	28543817	28543817	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_052923.1	-1	provisional	p.M222T	1.000	290	0%	296	15.5%	1	0%	possibly_damaging(0.616)	deleterious(0.01)	deleterious(0.620)	NULL
HLA-DRB5	3127	genome.wustl.edu	37	6	32485856	32485856	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002125.3	-1	reviewed	e5-2	0.280	162	0%	139	10.8%	1	0%	-	-	-	-
UHRF1BP1	54887	genome.wustl.edu	37	6	34825153	34825153	+	Silent	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_017754.3	+1	validated	p.S493	1.000	277	0%	315	30.2%	3	33.3%	-	-	-	NULL
CLPSL2	389383	genome.wustl.edu	37	6	35745300	35745300	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_207409.2	+1	validated	p.D50G	0.000	46	0%	43	23.3%	0	-	possibly_damaging(0.86)	tolerated(0.05)	deleterious(0.678)	NULL
CUL9	23113	genome.wustl.edu	37	6	43153210	43153210	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015089.2	+1	validated	p.V204	1.000	177	0%	152	11.2%	3	33.3%	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56600082	56600082	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000370769	-1	known	p.R33W	1.000	218	0%	206	17%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Calponin-homology domain CH-domain
FKBP1C	642489	genome.wustl.edu	37	6	63921726	63921726	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000370659	+1	known	p.P89T	1.000	195	0%	203	10.8%	264	0%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	HMMPfam_FKBP_C,superfamily_SSF54534
HTR1E	3354	genome.wustl.edu	37	6	87725675	87725675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000865.2	+1	validated	p.A208V	1.000	265	0%	277	18.8%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_7tm_1,superfamily_SSF81321
NDUFAF4	29078	genome.wustl.edu	37	6	97345675	97345675	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014165.3	-1	reviewed	p.M1I	1.000	266	0%	224	30.4%	21	23.8%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_UPF0240
CDK19	23097	genome.wustl.edu	37	6	110935837	110935837	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015076.3	-1	reviewed	p.S470	0.999	265	0%	258	12%	7	14.2%	-	-	-	NULL
ROS1	6098	genome.wustl.edu	37	6	117662779	117662779	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002944.2	-1	reviewed	p.Q1562	0.000	313	0.3%	344	30.5%	1	100%	-	-	-	HMMSmart_FN3,superfamily_FN_III-like
STXBP5	134957	genome.wustl.edu	37	6	147525815	147525815	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001127715.1	+1	reviewed	p.C49	1.000	41	0%	33	27.3%	1	0%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
C6orf97	80129	genome.wustl.edu	37	6	151939086	151939086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_025059.3	+1	validated	p.A651V	0.978	291	0%	244	25%	16	6.2%	benign(0)	tolerated(0.45)	neutral(0.012)	NULL
IGF2R	3482	genome.wustl.edu	37	6	160500626	160500626	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000876.2	+1	reviewed	p.S1831	0.036	163	0%	155	25.8%	38	21%	-	-	-	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
LPA	4018	genome.wustl.edu	37	6	160977176	160977176	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005577.2	-1	reviewed	p.H1618	0.996	627	0%	621	15.1%	0	-	-	-	-	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like
MAP3K4	4216	genome.wustl.edu	37	6	161470851	161470851	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005922.2	+1	reviewed	p.G516V	0.992	109	0%	110	16.4%	8	37.5%	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	NULL
MLLT4	4301	genome.wustl.edu	37	6	168347417	168347417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001040001.1	+1	validated	p.R1122Q	1.000	222	0%	201	12.4%	29	20.6%	probably_damaging(1)	tolerated(0.28)	deleterious(0.531)	superfamily_PDZ
SDK1	221935	genome.wustl.edu	37	7	4089055	4089055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_152744.3	+1	validated	p.P893L	0.991	99	0%	101	11.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SDK1	221935	genome.wustl.edu	37	7	4272966	4272966	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_152744.3	+1	validated	p.R1969	0.834	95	0%	98	15.3%	4	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FOXK1	221937	genome.wustl.edu	37	7	4800735	4800735	+	Silent	SNP	C	C	T	rs182098207	by1000genomes	TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001037165.1	+1	validated	p.P579	0.006	26	0%	24	29.2%	13	7.6%	-	-	-	NULL
FERD3L	222894	genome.wustl.edu	37	7	19184597	19184597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_152898.2	-1	validated	p.T130M	1.000	160	0%	168	28%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic
DNAH11	8701	genome.wustl.edu	37	7	21678630	21678630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003777.3	+1	reviewed	p.V1636I	1.000	402	0.2%	441	12.9%	8	0%	benign(0)	tolerated(0.35)	neutral(0.021)	HMMPfam_DHC_N2
ENSG00000251528	0	genome.wustl.edu	37	7	34980269	34980269	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000508348	+1	novel	NULL	0.002	151	0%	147	11.6%	1	0%	-	-	-	-
ADCY1	107	genome.wustl.edu	37	7	45632457	45632457	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_021116.2	+1	reviewed	p.R247W	1.000	365	0%	328	15.9%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
PHKG1	5260	genome.wustl.edu	37	7	56149625	56149625	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006213.3	-1	reviewed	p.S251	0.027	46	0%	35	22.9%	1	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF716	441234	genome.wustl.edu	37	7	57528628	57528628	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	XM_002342727.1	+1	model	p.N154S	0.132	427	0%	475	33.9%	0	-	benign(0.001)	tolerated(1)	-	superfamily_C2H2 and C2HC zinc fingers
SEMA3C	10512	genome.wustl.edu	37	7	80427521	80427522	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006379.2	-1	validated	p.Y340fs	1.000:0.993	-	-	-	-	-	-	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
DBF4	10926	genome.wustl.edu	37	7	87530094	87530094	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006716.3	+1	validated	p.G275	0.814	331	0%	276	23.6%	0	-	-	-	-	NULL
ENSG00000240720	0	genome.wustl.edu	37	7	91792840	91792840	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000430130	-1	known	p.H559	0.001	55	0%	50	16%	0	-	-	-	-	superfamily_L domain-like
FOXP2	93986	genome.wustl.edu	37	7	114271582	114271582	+	Splice_Site	SNP	G	G	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_148898.2	+1	reviewed	e6-1	0.135	36	0%	41	24.4%	0	-	-	-	-	-
SPAM1	6677	genome.wustl.edu	37	7	123594428	123594428	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003117.4	+1	reviewed	p.Q268	0.000	196	0%	175	14.9%	0	-	-	-	-	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat
FAM71F2	346653	genome.wustl.edu	37	7	128320095	128320095	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001012454.3	+1	validated	p.S209N	0.718	109	0%	78	11.5%	0	-	possibly_damaging(0.915)	tolerated(0.34)	neutral(0.390)	NULL
FLNC	2318	genome.wustl.edu	37	7	128484133	128484133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001458.4	+1	reviewed	p.R1002Q	1.000	66	0%	71	19.7%	13	0%	benign(0.092)	tolerated(0.28)	neutral(0.038)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
ATP6V0A4	50617	genome.wustl.edu	37	7	138417772	138417772	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020632.2	-1	reviewed	p.L586	0.997	288	0%	339	10.3%	3	33.3%	-	-	-	HMMPfam_V_ATPase_I
CUL1	8454	genome.wustl.edu	37	7	148483687	148483687	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003592.2	+1	validated	p.Q448R	1.000	244	0%	264	14%	35	25.7%	benign(0.278)	tolerated(0.13)	neutral(0.282)	HMMPfam_Cullin,HMMSmart_SM00182,superfamily_Cullin homology domain
SSPO	23145	genome.wustl.edu	37	7	149492400	149492400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000378016	+1	known	p.A2097S	0.000	32	0%	26	30.8%	0	-	-	-	-	HMMSmart_SM00231,superfamily_Galactose-binding domain-like
ZNF862	643641	genome.wustl.edu	37	7	149559002	149559002	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001099220.1	+1	provisional	p.Q918R	0.997	69	0%	60	11.7%	9	11.1%	benign(0.001)	tolerated(0.32)	neutral(0.024)	NULL
RP1L1	94137	genome.wustl.edu	37	8	10466259	10466259	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_178857.5	-1	validated	p.A1783	0.000	378	0%	499	26.1%	1	0%	-	-	-	HMMPfam_S-antigen
BMP1	649	genome.wustl.edu	37	8	22037964	22037964	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006129.4	+1	reviewed	p.V349M	0.037	144	0%	165	10.9%	29	13.7%	possibly_damaging(0.823)	tolerated(0.17)	neutral(0.370)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
PIWIL2	55124	genome.wustl.edu	37	8	22136972	22136972	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001135721.1	+1	validated	p.P25S	1.000	160	0%	171	21.6%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
PIWIL2	55124	genome.wustl.edu	37	8	22141741	22141742	+	Frame_Shift_Del	DEL	AC	AC	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	AC	AC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001135721.1	+1	validated	p.Q234fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_PAZ domain
MAK16	84549	genome.wustl.edu	37	8	33347842	33347842	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032509.3	+1	validated	p.R144S	0.991	596	0%	743	23%	6	16.6%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_Mak16
ZMAT4	79698	genome.wustl.edu	37	8	40554877	40554877	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_024645.2	-1	validated	p.L79H	1.000	244	0%	326	10.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00451,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355
CRISPLD1	83690	genome.wustl.edu	37	8	75929600	75929600	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_031461.4	+1	validated	p.N348D	1.000	290	0%	362	11.6%	21	0%	benign(0.013)	tolerated(0.34)	neutral(0.024)	HMMPfam_LCCL,HMMSmart_SM00603,superfamily_LCCL domain
CPNE3	8895	genome.wustl.edu	37	8	87568446	87568446	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003909.3	+1	reviewed	p.G457	0.975	351	0%	397	20.7%	50	32%	-	-	-	HMMSmart_VWA,HMMPfam_Copine,superfamily_SSF53300
DCAF4L2	138009	genome.wustl.edu	37	8	88885797	88885797	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_152418.3	-1	validated	p.L135	0.858	179	0%	239	11.3%	0	-	-	-	-	superfamily_WD40_like
INTS8	55656	genome.wustl.edu	37	8	95869029	95869030	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_017864.2	+1	provisional	p.F593fs	0.994:1.000	-	-	-	-	-	-	-	-	-	NULL
OSR2	116039	genome.wustl.edu	37	8	99961313	99961313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001142462.1	+1	validated	p.A45T	1.000	50	0%	58	15.5%	58	3.4%	possibly_damaging(0.792)	deleterious(0)	deleterious(0.742)	NULL
TNFRSF11B	4982	genome.wustl.edu	37	8	119945263	119945263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002546.3	-1	reviewed	p.R103C	1.000	174	0%	175	11.4%	6	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_TNFR_c6,HMMSmart_SM00208,PatternScan_TNFR_NGFR_1,superfamily_TNF receptor-like
FAM83A	84985	genome.wustl.edu	37	8	124221769	124221769	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000360681	+1	known	p.D293	0.000	153	0%	176	15.9%	110	20%	-	-	-	NULL
TG	7038	genome.wustl.edu	37	8	134125686	134125686	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003235.4	+1	reviewed	p.G2531	0.938	176	0%	199	11.6%	0	-	-	-	-	HMMPfam_COesterase,superfamily_alpha/beta-Hydrolases
PLEC	5339	genome.wustl.edu	37	8	144996775	144996776	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_201380.2	-1	reviewed	p.S2578fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
SLC39A4	55630	genome.wustl.edu	37	8	145638016	145638016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_130849.2	-1	reviewed	p.P617L	1.000	119	0%	127	11%	210	15.2%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_Zip
KANK1	23189	genome.wustl.edu	37	9	738367	738367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015158.2	+1	reviewed	p.Y1139C	1.000	228	0%	184	31%	40	45%	benign(0.42)	deleterious(0.04)	deleterious(0.485)	superfamily_ANK
RANBP6	26953	genome.wustl.edu	37	9	6012633	6012633	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_012416.2	-1	validated	p.P992H	1.000	347	0%	300	14%	7	0%	benign(0.111)	tolerated(0.21)	neutral(0.052)	NULL
IFNW1	3467	genome.wustl.edu	37	9	21141496	21141496	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002177.1	-1	provisional	p.D25G	0.971	68	0%	50	16%	0	-	benign(0.012)	deleterious(0.03)	neutral(0.365)	HMMPfam_Interferon,superfamily_4_helix_cytokine
ACO1	48	genome.wustl.edu	37	9	32431734	32431734	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002197.2	+1	reviewed	p.Q582*	0.960	188	0%	195	11.3%	13	0%	-	-	-	superfamily_Aconitase iron-sulfur domain
RPP25L	138716	genome.wustl.edu	37	9	34611203	34611203	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_148178.1	-1	validated	p.R31*	1.000	142	0%	107	23.4%	63	22.2%	-	-	-	HMMPfam_Alba,superfamily_SSF82704
NPR2	4882	genome.wustl.edu	37	9	35808596	35808596	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003995.3	+1	reviewed	p.L935I	1.000	151	0%	157	15.9%	9	11.1%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
TJP2	9414	genome.wustl.edu	37	9	71869243	71869243	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004817.3	+1	reviewed	p.R1176C	0.967	107	0%	116	17.2%	112	23.2%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
SHC3	53358	genome.wustl.edu	37	9	91690037	91690037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016848.4	-1	validated	p.P239L	0.944	301	0%	293	28.3%	2	100%	benign(0.108)	tolerated(0.44)	neutral(0.021)	HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like
FSD1L	83856	genome.wustl.edu	37	9	108230528	108230528	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001145313.1	+1	validated	p.S88P	1.000	215	0%	164	25.6%	1	100%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMSmart_SM00502
ACTL7B	10880	genome.wustl.edu	37	9	111617698	111617699	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006686.3	-1	reviewed	p.G172fs	0.838:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
ACTL7A	10881	genome.wustl.edu	37	9	111625559	111625559	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006687.2	+1	reviewed	p.S319	0.005	50	0%	60	15%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
PAPPA	5069	genome.wustl.edu	37	9	118950237	118950237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002581.3	+1	reviewed	p.R407H	0.942	41	0%	35	25.7%	2	0%	benign(0.001)	tolerated(0.67)	neutral(0.003)	HMMPfam_Notch,HMMSmart_NL,superfamily_SSF55486
ENSG00000249728	0	genome.wustl.edu	37	9	133346366	133346366	+	RNA	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000503205	-1	novel	NULL	0.000	123	0%	126	14.3%	0	-	-	-	-	-
TSC1	7248	genome.wustl.edu	37	9	135771937	135771937	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000368.4	-1	reviewed	p.S1060	0.984	77	0%	73	13.7%	2	0%	unknown(0)	-	-	NULL
OLFM1	10439	genome.wustl.edu	37	9	138011764	138011764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014279.4	+1	validated	p.R382C	1.000	35	0%	25	32%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_OLF,HMMSmart_OLF
CAMSAP1	157922	genome.wustl.edu	37	9	138712840	138712840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015447.3	-1	validated	p.V1223M	0.000	62	0%	51	31.4%	17	41.1%	benign(0.003)	tolerated(0.14)	neutral(0.249)	NULL
WDR37	22884	genome.wustl.edu	37	10	1123944	1123944	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014023.3	+1	reviewed	e2+1	1.000	198	0%	181	26.5%	0	-	-	-	-	-
SEC61A2	55176	genome.wustl.edu	37	10	12209885	12209885	+	RNA	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NR_024576.1	+1	reviewed	NULL	0.000	96	0%	82	14.6%	3	0%	-	-	-	-
MCM10	55388	genome.wustl.edu	37	10	13213065	13213065	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_182751.2	+1	validated	p.D51N	0.998	146	0%	174	17.2%	1	0%	possibly_damaging(0.717)	tolerated(0.19)	neutral(0.309)	NULL
FAM21A	387680	genome.wustl.edu	37	10	51829472	51829472	+	Splice_Site	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001005751.1	+1	validated	e3+1	1.000	441	0%	457	11.2%	0	-	-	-	-	-
PCDH15	65217	genome.wustl.edu	37	10	55587307	55587307	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001142763.1	-1	reviewed	p.R1410C	1.000	144	0%	150	11.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AIFM2	84883	genome.wustl.edu	37	10	71880342	71880342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032797.4	-1	reviewed	p.R143Q	0.472	328	0%	300	30%	17	41.1%	benign(0.001)	tolerated(0.61)	neutral(0.004)	HMMPfam_Pyr_redox_2,superfamily_FAD/NAD(P)-binding domain
CDH23	64072	genome.wustl.edu	37	10	73464766	73464766	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_022124.5	+1	reviewed	p.S944	0.684	14	0%	18	33.3%	1	0%	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PPIF	10105	genome.wustl.edu	37	10	81109426	81109426	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005729.3	+1	reviewed	p.F78L	1.000	237	0%	241	14.9%	75	20%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase
PTEN	5728	genome.wustl.edu	37	10	89712008	89712009	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000371953	+1	known	p.T210fs	1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720670	89720670	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000371953	+1	known	p.W274*	1.000	150	0%	163	33.1%	13	23%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
LIPM	340654	genome.wustl.edu	37	10	90562724	90562724	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001128215.1	+1	validated	p.A24V	0.232	274	0%	276	25.7%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
SEC31B	25956	genome.wustl.edu	37	10	102256985	102256985	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015490.3	-1	reviewed	p.E681D	0.998	91	0%	94	12.8%	3	66.6%	benign(0.01)	tolerated(0.31)	neutral(0.028)	NULL
PDZD8	118987	genome.wustl.edu	37	10	119043399	119043399	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_173791.3	-1	provisional	p.R949C	1.000	243	0%	227	24.2%	27	37%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FGFR2	2263	genome.wustl.edu	37	10	123325005	123325005	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_022970.3	-1	reviewed	p.T108S	1.000	234	0%	244	14.3%	18	5.5%	benign(0)	tolerated(0.32)	neutral(0.024)	HMMSmart_IGc2,HMMPfam_ig,superfamily_SSF48726
DMBT1	1755	genome.wustl.edu	37	10	124352100	124352100	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_007329.2	+1	reviewed	p.V830G	1.000	235	0%	192	13.5%	369	14.3%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like
MKI67	4288	genome.wustl.edu	37	10	129902979	129902979	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002417.4	-1	reviewed	p.A2375	0.000	1082	0%	986	10.8%	7	57.1%	-	-	-	HMMPfam_K167R
MUC5B	727897	genome.wustl.edu	37	11	1274056	1274056	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002458.1	+1	validated	p.T5024	0.928	84	0%	80	13.8%	754	28.9%	-	-	-	NULL
NUP98	4928	genome.wustl.edu	37	11	3765739	3765739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016320.4	-1	reviewed	p.A470S	1.000	50	0%	70	11.4%	8	0%	probably_damaging(0.998)	tolerated(0.16)	deleterious(0.534)	NULL
OR52B6	340980	genome.wustl.edu	37	11	5602861	5602861	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001005162.2	+1	validated	p.A252V	0.817	604	0%	584	13.4%	0	-	probably_damaging(0.983)	deleterious(0.01)	deleterious(0.835)	HMMPfam_7tm_1,superfamily_SSF81321
USP47	55031	genome.wustl.edu	37	11	11964496	11964496	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_017944.3	+1	validated	p.T908	1.000	411	0%	414	12.1%	30	20%	-	-	-	NULL
MRGPRX4	117196	genome.wustl.edu	37	11	18195145	18195145	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_054032.3	+1	validated	p.S114	0.001	284	0%	278	13.3%	0	-	-	-	-	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
KCNA4	3739	genome.wustl.edu	37	11	30033155	30033155	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002233.2	-1	reviewed	p.P357	0.048	77	0%	83	15.7%	0	-	-	-	-	superfamily_Voltage-gated potassium channels
MADD	8567	genome.wustl.edu	37	11	47330145	47330145	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003682.3	+1	reviewed	p.K1255E	0.998	119	0%	115	16.5%	20	20%	possibly_damaging(0.579)	tolerated(0.32)	neutral(0.223)	NULL
VEGFB	7423	genome.wustl.edu	37	11	64003286	64003286	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003377.3	+1	provisional	p.V35	1.000	128	0%	129	10.1%	76	9.2%	-	-	-	superfamily_Cystine-knot cytokines
CDCA5	113130	genome.wustl.edu	37	11	64846731	64846731	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000404147	-1	known	p.R258G	0.000	129	0%	115	12.2%	1	0%	unknown(0)	-	-	NULL
RBM14	10432	genome.wustl.edu	37	11	66393101	66393101	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006328.3	+1	validated	p.R585Q	1.000	69	0%	68	11.8%	50	20%	unknown(0)	tolerated(0.25)	-	NULL
RBM4	5936	genome.wustl.edu	37	11	66407320	66407320	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002896.2	+1	validated	p.T46	0.975	356	0.3%	351	10.8%	147	16.3%	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ADRBK1	156	genome.wustl.edu	37	11	67050619	67050621	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001619.3	+1	reviewed	p.F417in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
UNC93B1	81622	genome.wustl.edu	37	11	67764221	67764221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000227471	-1	known	p.T313M	1.000	69	0%	66	16.7%	173	22.5%	probably_damaging(1)	tolerated(0.11)	deleterious(0.772)	NULL
ARAP1	116985	genome.wustl.edu	37	11	72406085	72406085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001040118.2	-1	reviewed	p.V1212M	0.766	187	0%	146	34.9%	116	40.5%	possibly_damaging(0.592)	tolerated(0.21)	neutral(0.248)	HMMPfam_RA
ATM	472	genome.wustl.edu	37	11	108190745	108190746	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000051.3	+1	reviewed	p.E2139fs	1.000:0.999	-	-	-	-	-	-	-	-	-	HMMPfam_FAT,superfamily_ARM repeat
ARHGAP20	57569	genome.wustl.edu	37	11	110450579	110450579	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020809.2	-1	validated	p.T1031A	1.000	140	0%	142	14.1%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
C11orf88	399949	genome.wustl.edu	37	11	111407527	111407527	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_207430.2	+1	validated	p.Q189R	0.882	304	0%	281	27.4%	55	80%	benign(0.021)	deleterious(0)	neutral(0.446)	NULL
SIK2	23235	genome.wustl.edu	37	11	111590662	111590662	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015191.1	+1	validated	p.R477H	1.000	79	0%	71	16.9%	15	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Protein kinase-like (PK-like)
DIXDC1	85458	genome.wustl.edu	37	11	111864294	111864294	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001037954.2	+1	validated	p.L449P	0.552	167	0.6%	157	24.2%	8	12.5%	-	-	-	NULL
SORL1	6653	genome.wustl.edu	37	11	121490626	121490626	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003105.4	+1	reviewed	p.L1963F	1.000	222	0%	213	12.7%	13	23%	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
CDON	50937	genome.wustl.edu	37	11	125873951	125873951	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016952.4	-1	validated	p.M624I	0.029	124	0%	140	12.1%	1	0%	benign(0.005)	tolerated(0.54)	neutral(0.007)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
VWF	7450	genome.wustl.edu	37	12	6125770	6125770	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000552.3	-1	reviewed	p.I1741	0.090	152	0%	134	13.4%	66	0%	-	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PTMS	5763	genome.wustl.edu	37	12	6879330	6879330	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002824.4	+1	validated	p.E68	1.000	119	0%	123	21.1%	460	17.8%	unknown(0)	-	-	HMMPfam_Prothymosin
EPS8	2059	genome.wustl.edu	37	12	15834226	15834226	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004447.5	-1	reviewed	p.S24P	1.000	68	0%	85	27.1%	22	31.8%	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
SLCO1A2	6579	genome.wustl.edu	37	12	21428270	21428270	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000390670	-1	known	p.H565Y	0.001	44	0%	57	15.8%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
CASC1	55259	genome.wustl.edu	37	12	25311420	25311420	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018272.3	-1	validated	p.R62	0.000	473	0.2%	584	19.5%	4	0%	-	-	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25398284	25398284	+	Missense_Mutation	SNP	C	C	T	rs121913529	byCluster	TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_033360.2	-1	reviewed	p.G12D	1.000	340	0%	417	43.4%	10	80%	possibly_damaging(0.886)	deleterious(0)	deleterious(0.791)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
KLHDC5	57542	genome.wustl.edu	37	12	27950766	27950766	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020782.1	+1	validated	p.I395	0.995	47	0%	45	15.6%	16	31.2%	-	-	-	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
DNM1L	10059	genome.wustl.edu	37	12	32873712	32873712	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_012062.3	+1	reviewed	p.L285	1.000	256	0%	275	11.6%	5	40%	-	-	-	HMMPfam_Dynamin_M,superfamily_P-loop containing nucleoside triphosphate hydrolases
TUBA1A	7846	genome.wustl.edu	37	12	49579767	49579767	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006009.2	-1	reviewed	p.Q128K	1.000	160	0%	172	12.2%	415	26.7%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
CERS5	91012	genome.wustl.edu	37	12	50529536	50529536	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_147190.2	-1	provisional	p.R284Q	1.000	147	0%	145	12.4%	29	34.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRAM_LAG1_CLN8,HMMSmart_TLC
OR2AP1	121129	genome.wustl.edu	37	12	55968615	55968615	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000321688	+1	known	p.C139	0.000	111	0%	133	18.8%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
OSBPL8	114882	genome.wustl.edu	37	12	76769071	76769071	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020841.4	-1	reviewed	p.I603M	1.000	346	0%	356	27.5%	9	44.4%	benign(0.057)	deleterious(0.01)	neutral(0.409)	HMMPfam_Oxysterol_BP
PLXNC1	10154	genome.wustl.edu	37	12	94654530	94654530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005761.1	+1	provisional	p.P1122S	1.000	201	0%	191	14.1%	7	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_Rho_GAP,HMMPfam_Plexin_cytopl
ACACB	32	genome.wustl.edu	37	12	109704126	109704126	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001093.3	+1	reviewed	p.V2446I	0.000	20	0%	17	23.5%	5	0%	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
DDX54	79039	genome.wustl.edu	37	12	113612890	113612890	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001111322.1	-1	reviewed	p.V275	1.000	47	0%	44	13.6%	57	24.5%	-	-	-	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
SDSL	113675	genome.wustl.edu	37	12	113866973	113866973	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_138432.2	+1	provisional	p.A75T	1.000	68	0%	63	20.6%	16	6.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PALP,superfamily_PyrdxlP-dep_enz_bsu
PRKAB1	5564	genome.wustl.edu	37	12	120117782	120117782	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006253.4	+1	reviewed	p.N237	1.000	384	0%	340	10.6%	88	12.5%	-	-	-	HMMPfam_AMPKBI
DHX37	57647	genome.wustl.edu	37	12	125437064	125437064	+	Silent	SNP	C	C	T	rs34950844	byCluster;byFrequency;by1000genomes	TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032656.2	-1	reviewed	p.P916	0.132	53	0%	56	23.2%	14	14.2%	-	-	-	HMMPfam_DUF1605
RIMBP2	23504	genome.wustl.edu	37	12	130921588	130921588	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015347.4	-1	validated	p.H618	0.010	147	0%	130	20.8%	0	-	-	-	-	NULL
PARP4	143	genome.wustl.edu	37	13	25068713	25068713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006437.3	-1	reviewed	p.A247T	0.938	446	0%	438	13.9%	17	35.2%	possibly_damaging(0.911)	tolerated(0.1)	deleterious(0.649)	NULL
NBEA	26960	genome.wustl.edu	37	13	35734112	35734112	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015678.4	+1	validated	p.D1268	0.970	148	0%	117	16.2%	1	0%	-	-	-	superfamily_ARM repeat
FREM2	341640	genome.wustl.edu	37	13	39263338	39263338	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_207361.4	+1	reviewed	p.H619	0.000	446	0%	421	13.8%	0	-	-	-	-	NULL
SLC25A15	10166	genome.wustl.edu	37	13	41381530	41381532	+	In_Frame_Del	DEL	TTC	TTC	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014252.3	+1	reviewed	p.F188in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
LOC341689	341689	genome.wustl.edu	37	13	59103567	59103567	+	RNA	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	XR_017487.3	+1	model	NULL	0.217	198	0%	210	17.1%	0	-	-	-	-	-
MYO16	23026	genome.wustl.edu	37	13	109365071	109365071	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015011.1	+1	validated	p.L97I	1.000	113	0%	92	37%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
TOX4	9878	genome.wustl.edu	37	14	21961130	21961130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014828.2	+1	validated	p.P452L	1.000	45	0%	47	10.6%	45	17.7%	possibly_damaging(0.877)	deleterious(0)	deleterious(0.786)	NULL
G2E3	55632	genome.wustl.edu	37	14	31074967	31074969	+	In_Frame_Del	DEL	TCA	TCA	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	TCA	TCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_017769.3	+1	validated	p.S424in_frame_del	1.000:1.000:0.997	-	-	-	-	-	-	-	-	-	HMMPfam_HECT,superfamily_HECT
SLC39A9	55334	genome.wustl.edu	37	14	69866089	69866089	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018375.3	+1	validated	p.M1I	1.000	634	0%	658	33%	16	31.2%	benign(0.016)	deleterious(0)	neutral(0.445)	NULL
AHSA1	10598	genome.wustl.edu	37	14	77929019	77929019	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_012111.2	+1	validated	p.T130K	1.000	297	0%	260	30.4%	170	40.5%	possibly_damaging(0.942)	tolerated(0.27)	neutral(0.420)	HMMPfam_Aha1_N,superfamily_Activator of Hsp90 ATPase Aha1
SLC24A4	123041	genome.wustl.edu	37	14	92909078	92909078	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_153646.2	+1	validated	p.D150G	1.000	431	0%	423	29.6%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMPfam_Na_Ca_ex
PPP2R5C	5527	genome.wustl.edu	37	14	102384272	102384272	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002719.3	+1	reviewed	p.D477	0.997	285	0%	226	23.9%	6	0%	-	-	-	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102499764	102499764	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001376.4	+1	reviewed	p.A3452	0.037	108	0%	83	15.7%	135	16.2%	-	-	-	NULL
PPP1R13B	23368	genome.wustl.edu	37	14	104205139	104205139	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015316.2	-1	reviewed	p.P914H	1.000	118	0%	121	15.7%	49	16.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_ANK
IGHV3-7	28452	genome.wustl.edu	37	14	106518460	106518460	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000390598	-1	known	p.S97	0.000	376	0%	439	10.5%	47	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
HERC2	8924	genome.wustl.edu	37	15	28473477	28473477	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004667.4	-1	reviewed	p.R1784H	1.000	358	0%	364	29.1%	7	28.5%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
HERC2	8924	genome.wustl.edu	37	15	28493757	28493757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004667.4	-1	reviewed	p.R1059H	1.000	257	0%	262	29%	2	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZNF770	54989	genome.wustl.edu	37	15	35275533	35275533	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014106.2	-1	validated	p.H35Y	1.000	279	0%	245	22.4%	7	14.2%	possibly_damaging(0.861)	tolerated(0.33)	neutral(0.357)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100288995	100288995	genome.wustl.edu	37	15	41228676	41228676	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	XM_002343338.1	-1	model	p.G134S	0.000	80	0%	53	17%	18	0%	-	-	-	NULL
MAPKBP1	23005	genome.wustl.edu	37	15	42110725	42110725	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001128608.1	+1	validated	p.T707A	1.000	599	0%	563	19%	5	20%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FRMD5	84978	genome.wustl.edu	37	15	44177949	44177949	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032892.3	-1	validated	p.E297K	1.000	141	0%	125	18.4%	0	-	probably_damaging(0.998)	tolerated(0.61)	deleterious(0.478)	HMMPfam_FERM_C,superfamily_PH domain-like
EID1	23741	genome.wustl.edu	37	15	49170530	49170530	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014335.2	+1	validated	p.E53K	0.912	65	0%	74	27%	228	34.6%	probably_damaging(0.968)	tolerated(0.2)	neutral(0.459)	NULL
HERC1	8925	genome.wustl.edu	37	15	64039185	64039185	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003922.3	-1	reviewed	p.Q818*	1.000	159	0%	153	11.8%	3	0%	-	-	-	NULL
NPRL3	8131	genome.wustl.edu	37	16	142708	142708	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000399953	-1	known	p.A349	0.069	164	0%	104	32.7%	97	44.3%	-	-	-	HMMPfam_UPF0171
CASKIN1	57524	genome.wustl.edu	37	16	2235129	2235129	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020764.3	-1	validated	p.G408S	0.304	50	0%	36	19.4%	0	-	possibly_damaging(0.932)	tolerated(0.12)	deleterious(0.639)	NULL
SLX4	84464	genome.wustl.edu	37	16	3640795	3640795	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032444.2	-1	provisional	p.A948	0.000	38	0%	65	13.8%	2	0%	-	-	-	NULL
TRAP1	10131	genome.wustl.edu	37	16	3721734	3721734	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016292.2	-1	validated	p.S408	0.701	38	0%	40	25%	144	34%	-	-	-	superfamily_Ribosomal_S5_D2-typ_fold
CORO7	79585	genome.wustl.edu	37	16	4410510	4410510	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_024535.3	-1	validated	p.A653T	1.000	50	0%	62	19.4%	19	15.7%	possibly_damaging(0.912)	deleterious(0)	deleterious(0.808)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
GP2	2813	genome.wustl.edu	37	16	20329561	20329561	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001007240.1	-1	validated	p.A403V	1.000	247	0%	221	16.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Zona_pellucida,HMMSmart_SM00241,PatternScan_ZP_1
C16orf92	146378	genome.wustl.edu	37	16	30035326	30035326	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001109660.1	+1	predicted	p.S99I	0.000	586	0%	584	30%	0	-	probably_damaging(0.965)	deleterious(0.01)	deleterious(0.812)	NULL
ARMC5	79798	genome.wustl.edu	37	16	31473906	31473906	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001105247.1	+1	validated	p.Q346	1.000	96	0%	67	14.9%	7	28.5%	-	-	-	HMMSmart_SM00185,superfamily_ARM repeat
LOC100287647	100287647	genome.wustl.edu	37	16	33941831	33941831	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	XM_002343473.1	+1	model	p.Q91	0.998	372	0%	403	12.4%	0	-	-	-	-	NULL
OGFOD1	55239	genome.wustl.edu	37	16	56485605	56485605	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018233.3	+1	validated	p.S27	0.748	130	0%	110	11.8%	14	42.8%	-	-	-	NULL
KATNB1	10300	genome.wustl.edu	37	16	57787372	57787372	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005886.2	+1	reviewed	p.R373H	0.002	33	0%	34	29.4%	45	22.2%	possibly_damaging(0.598)	tolerated(0.36)	neutral(0.227)	NULL
SLC9A5	6553	genome.wustl.edu	37	16	67292325	67292325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004594.2	+1	validated	p.R534Q	1.000	86	0%	92	41.3%	1	0%	possibly_damaging(0.707)	tolerated(0.1)	deleterious(0.541)	NULL
AGRP	181	genome.wustl.edu	37	16	67516618	67516618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001138.1	-1	reviewed	p.T107M	1.000	67	0%	89	33.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Agouti,HMMSmart_Agouti,PatternScan_AGOUTI_1,superfamily_Agouti
ZFHX3	463	genome.wustl.edu	37	16	72829284	72829284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006885.3	-1	reviewed	p.A2433T	0.120	239	0%	224	10.7%	10	10%	unknown(0)	-	-	NULL
ENSG00000226351	0	genome.wustl.edu	37	16	73127092	73127092	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000433532	+1	known	p.T46M	0.000	126	0%	139	10.8%	0	-	-	-	-	NULL
TMEM170A	124491	genome.wustl.edu	37	16	75481528	75481528	+	Silent	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_145254.1	-1	provisional	p.A121	0.999	300	0%	310	11.9%	9	11.1%	-	-	-	HMMPfam_Tmemb_170
COX4I1	1327	genome.wustl.edu	37	16	85839355	85839355	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001861.2	+1	reviewed	p.F86L	1.000	300	0%	229	27.5%	847	39.1%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_COX4,superfamily_Mitochondrial cytochrome c oxidase subunit IV
MTHFSD	64779	genome.wustl.edu	37	16	86585863	86585863	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000381214	-1	known	p.L52	0.968	184	0%	178	20.2%	3	0%	-	-	-	HMMPfam_5-FTHF_cyc-lig,superfamily_NagB/RpiA/CoA transferase-like
FAM157C	100132055	genome.wustl.edu	37	16	90172952	90172952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	XM_001714162.2	+1	model	p.A247T	0.063	46	0%	31	12.9%	0	-	-	-	-	NULL
MNT	4335	genome.wustl.edu	37	17	2290553	2290553	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020310.2	-1	reviewed	p.G464D	0.987	132	0%	115	14.8%	31	19.3%	unknown(0)	tolerated(0.48)	-	NULL
KIAA0664	23277	genome.wustl.edu	37	17	2601268	2601268	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015229.3	-1	validated	p.R590H	0.310	32	0%	24	29.2%	47	25.5%	possibly_damaging(0.732)	tolerated(0.12)	deleterious(0.528)	NULL
CTNS	1497	genome.wustl.edu	37	17	3558526	3558526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001031681.2	+1	reviewed	p.R114H	0.946	133	0%	127	29.9%	10	20%	possibly_damaging(0.888)	tolerated(0.06)	deleterious(0.670)	NULL
ANKFY1	51479	genome.wustl.edu	37	17	4085525	4085525	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016376.3	-1	validated	p.P692L	1.000	80	0%	99	20.2%	14	7.1%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
MINK1	50488	genome.wustl.edu	37	17	4797386	4797386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_153827.4	+1	reviewed	p.R890C	1.000	62	0%	52	15.4%	67	14.9%	possibly_damaging(0.817)	deleterious(0)	deleterious(0.754)	NULL
ALOXE3	59344	genome.wustl.edu	37	17	8013593	8013593	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_021628.2	-1	reviewed	p.P374	0.003	32	0%	37	18.9%	0	-	-	-	-	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
MYH8	4626	genome.wustl.edu	37	17	10293859	10293859	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002472.2	-1	reviewed	p.A1909V	1.000	291	0%	302	36.8%	0	-	possibly_damaging(0.945)	deleterious(0.02)	deleterious(0.772)	HMMPfam_Myosin_tail_1
MYH8	4626	genome.wustl.edu	37	17	10323417	10323417	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002472.2	-1	reviewed	p.A43V	0.000	615	0.3%	619	28.8%	0	-	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Myosin_N
MAPK7	5598	genome.wustl.edu	37	17	19286405	19286406	+	Frame_Shift_Ins	INS	-	-	CG	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002749.3	+1	reviewed	p.S772fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26966356	26966356	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014680.2	-1	validated	p.P402	0.001	301	0.3%	274	12%	27	11.1%	-	-	-	NULL
LYZL6	57151	genome.wustl.edu	37	17	34263832	34263832	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_020426.1	-1	provisional	p.L102	0.167	128	0%	111	18.9%	0	-	-	-	-	HMMPfam_Lys,HMMSmart_LYZ1,PatternScan_LACTALBUMIN_LYSOZYME_1,superfamily_SSF53955
TADA2A	6871	genome.wustl.edu	37	17	35825640	35825640	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001488.3	+1	reviewed	p.H273R	1.000	503	0%	541	26.1%	10	60%	possibly_damaging(0.925)	tolerated(0.06)	deleterious(0.696)	NULL
PSMD3	5709	genome.wustl.edu	37	17	38151531	38151533	+	In_Frame_Del	DEL	ACA	ACA	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002809.2	+1	reviewed	p.N401in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
PSMD3	5709	genome.wustl.edu	37	17	38153760	38153760	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_002809.2	+1	reviewed	p.R511W	1.000	179	0%	172	14%	227	20.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Rpn3_C
RARA	5914	genome.wustl.edu	37	17	38506177	38506177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000964.2	+1	validated	p.S157P	1.000	170	0%	170	21.2%	66	19.6%	possibly_damaging(0.7)	tolerated(0.22)	neutral(0.293)	HMMPfam_zf-C4,superfamily_Nuclear receptor ligand-binding domain
FZD2	2535	genome.wustl.edu	37	17	42635787	42635787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001466.2	+1	reviewed	p.A244V	1.000	54	0%	62	33.9%	34	35.2%	probably_damaging(0.968)	tolerated(0.1)	deleterious(0.696)	HMMPfam_Frizzled
MAPT	4137	genome.wustl.edu	37	17	44087690	44087690	+	Silent	SNP	T	T	C	rs63750756		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001123066.3	+1	validated	p.N614	1.000	182	0%	141	37.6%	0	-	-	-	-	HMMPfam_Tubulin-binding
KPNB1	3837	genome.wustl.edu	37	17	45754460	45754460	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000290158	+1	known	p.D690	0.999	330	0%	334	31.1%	143	32.1%	-	-	-	superfamily_ARM repeat
EME1	146956	genome.wustl.edu	37	17	48456217	48456218	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_152463.2	+1	reviewed	p.L359fs	0.974:0.970	-	-	-	-	-	-	-	-	-	HMMPfam_ERCC4
SCN4A	6329	genome.wustl.edu	37	17	62041914	62041914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000334.4	-1	reviewed	p.A456T	1.000	278	0%	249	18.9%	0	-	benign(0.135)	deleterious(0.05)	neutral(0.357)	NULL
ABCA6	23460	genome.wustl.edu	37	17	67084318	67084318	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_080284.2	-1	reviewed	p.P1230T	0.997	406	0%	371	22.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MRPS7	51081	genome.wustl.edu	37	17	73258940	73258940	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015971.3	+1	reviewed	p.M111V	1.000	484	0%	418	19.1%	111	21.6%	benign(0)	tolerated(1)	-	superfamily_Ribosomal protein S7
KIAA0195	9772	genome.wustl.edu	37	17	73488745	73488745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014738.4	+1	validated	p.A596V	0.998	141	0%	109	30.3%	34	41.1%	possibly_damaging(0.798)	tolerated(0.47)	neutral(0.311)	NULL
FBF1	85302	genome.wustl.edu	37	17	73915875	73915875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001080542.1	-1	provisional	p.R656Q	0.002	128	0%	94	12.8%	7	14.2%	benign(0.007)	tolerated(1)	-	NULL
MGAT5B	146664	genome.wustl.edu	37	17	74869037	74869037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_198955.1	+1	validated	p.R69H	1.000	157	0%	161	15.5%	0	-	benign(0.064)	deleterious(0.01)	neutral(0.410)	NULL
USP36	57602	genome.wustl.edu	37	17	76823323	76823323	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000432878	-1	known	p.C231	0.978	42	0%	30	16.7%	0	-	-	-	-	NULL
CCDC40	55036	genome.wustl.edu	37	17	78023994	78023994	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_017950.2	+1	validated	p.S357	0.000	22	0%	27	18.5%	26	19.2%	-	-	-	NULL
CD7	924	genome.wustl.edu	37	17	80273286	80273286	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006137.6	-1	reviewed	p.R212W	0.000	75	1.3%	67	14.9%	11	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
AFG3L2	10939	genome.wustl.edu	37	18	12329639	12329639	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006796.1	-1	reviewed	p.P773	0.197	263	0%	257	10.5%	49	18.3%	-	-	-	NULL
RNF125	54941	genome.wustl.edu	37	18	29617224	29617224	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_017831.3	+1	reviewed	p.D104N	0.025	287	0%	260	17.7%	4	0%	benign(0)	tolerated(0.59)	neutral(0.004)	NULL
PIAS2	9063	genome.wustl.edu	37	18	44470944	44470944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004671.2	-1	validated	p.R33H	1.000	68	0%	75	16%	9	22.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_SAP,HMMSmart_SM00513
SLC25A41	284427	genome.wustl.edu	37	19	6427453	6427453	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_173637.3	-1	validated	p.C228	0.980	52	0%	47	12.8%	3	0%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
PNPLA6	10908	genome.wustl.edu	37	19	7623747	7623747	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006702.4	+1	reviewed	p.R1099C	0.998	54	0%	43	16.3%	109	19.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Patatin,superfamily_Acyl_Trfase/lysoPlipase
ZNF558	148156	genome.wustl.edu	37	19	8932718	8932718	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_144693.1	-1	provisional	p.G27	0.000	510	0%	525	30.1%	8	50%	-	-	-	NULL
ENSG00000188314	0	genome.wustl.edu	37	19	9346320	9346320	+	Silent	SNP	C	C	A	rs34854496	byCluster;by1000genomes	TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000344049	+1	known	p.T62	0.139	174	0.6%	184	10.9%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
S1PR2	9294	genome.wustl.edu	37	19	10334939	10334939	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004230.3	-1	validated	p.V215M	1.000	36	0%	50	30%	20	40%	benign(0.008)	tolerated(0.09)	neutral(0.296)	HMMPfam_7tm_1,superfamily_SSF81321
ATG4D	84971	genome.wustl.edu	37	19	10662719	10662719	+	Splice_Site	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_032885.4	+1	reviewed	e8-2	1.000	91	0%	96	15.6%	7	100%	-	-	-	-
KANK2	25959	genome.wustl.edu	37	19	11287389	11287389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001136191.2	-1	validated	p.A542V	0.000	183	0%	179	17.9%	69	2.8%	benign(0)	tolerated(0.29)	neutral(0.029)	NULL
ELAVL3	1995	genome.wustl.edu	37	19	11568981	11568981	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001420.3	-1	reviewed	p.A203V	1.000	74	0%	64	14.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_RNA-binding domain RBD
ZNF69	7620	genome.wustl.edu	37	19	12016514	12016514	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000429654	+1	known	p.H434	0.361	185	0%	199	10.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ASNA1	439	genome.wustl.edu	37	19	12848478	12848478	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004317.2	+1	validated	p.C53	1.000	54	0%	59	11.9%	106	18.8%	-	-	-	HMMPfam_ArsA_ATPase,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNA1A	773	genome.wustl.edu	37	19	13482585	13482585	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001127222.1	-1	reviewed	p.A183V	0.993	39	0%	41	12.2%	0	-	possibly_damaging(0.508)	deleterious(0.02)	deleterious(0.553)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
NOTCH3	4854	genome.wustl.edu	37	19	15285055	15285055	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000435.2	-1	reviewed	p.P1520	0.569	12	0%	10	50%	103	40.7%	-	-	-	HMMPfam_NOD
AKAP8	10270	genome.wustl.edu	37	19	15472978	15472979	+	Frame_Shift_Del	DEL	TT	TT	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005858.2	-1	reviewed	p.K415fs	0.995:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_AKAP95
CIB3	117286	genome.wustl.edu	37	19	16275663	16275663	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_054113.2	-1	reviewed	p.T136	0.004	322	0%	344	29.4%	0	-	-	-	-	superfamily_EF-hand
MYO9B	4650	genome.wustl.edu	37	19	17305633	17305633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004145.3	+1	reviewed	p.V1133M	0.002	84	0%	79	32.9%	19	15.7%	possibly_damaging(0.852)	tolerated(0.23)	neutral(0.369)	NULL
UNC13A	23025	genome.wustl.edu	37	19	17766129	17766129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001080421.2	-1	validated	p.A537V	1.000	47	0%	50	14%	1	0%	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
HAPLN4	404037	genome.wustl.edu	37	19	19371814	19371814	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_023002.2	-1	validated	p.V98I	1.000	29	0%	26	15.4%	1	0%	probably_damaging(0.966)	tolerated(0.39)	neutral(0.424)	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PBX4	80714	genome.wustl.edu	37	19	19672883	19672883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_025245.1	-1	reviewed	p.A359V	0.056	115	0%	96	24%	3	33.3%	possibly_damaging(0.556)	deleterious(0)	deleterious(0.634)	NULL
ZNF429	353088	genome.wustl.edu	37	19	21720863	21720863	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001001415.2	+1	provisional	p.R670*	0.000	24	0%	21	19%	8	25%	-	-	-	NULL
ZNF43	7594	genome.wustl.edu	37	19	21990990	21990990	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003423.2	-1	validated	p.T617A	1.000	156	0%	177	29.4%	3	0%	benign(0.023)	deleterious(0)	neutral(0.446)	superfamily_C2H2 and C2HC zinc fingers
UBA2	10054	genome.wustl.edu	37	19	34960032	34960032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005499.2	+1	validated	p.R610H	1.000	209	0%	202	27.7%	47	40.4%	benign(0.016)	tolerated(0.22)	neutral(0.043)	NULL
ZNF792	126375	genome.wustl.edu	37	19	35449452	35449452	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_175872.4	-1	validated	p.S436N	0.000	242	0%	232	11.6%	10	20%	benign(0.122)	tolerated(0.64)	neutral(0.013)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
APLP1	333	genome.wustl.edu	37	19	36362251	36362251	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001024807.1	+1	reviewed	p.E179D	1.000	157	0%	126	17.5%	2	0%	benign(0.235)	deleterious(0.01)	neutral(0.429)	HMMPfam_A4_EXTRA,HMMSmart_SM00006,superfamily_Amyloid beta a4 protein copper binding domain (domain 2)
COX7A1	1346	genome.wustl.edu	37	19	36642594	36642594	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001864.2	-1	reviewed	p.R27C	0.027	76	0%	76	10.5%	16	0%	benign(0.075)	deleterious(0)	neutral(0.450)	HMMPfam_COX7a,superfamily_Mitochondrial cytochrome c oxidase subunit VIIa
ZNF461	92283	genome.wustl.edu	37	19	37130173	37130173	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_153257.2	-1	validated	p.E358	0.161	237	0%	284	19%	3	33.3%	-	-	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RYR1	6261	genome.wustl.edu	37	19	38959616	38959616	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000540.2	+1	reviewed	p.W1131L	1.000	113	0%	112	27.7%	0	-	possibly_damaging(0.649)	-	-	HMMPfam_SPRY,HMMSmart_SM00449
PAPL	390928	genome.wustl.edu	37	19	39589194	39589194	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001004318.2	+1	validated	p.R73H	0.246	79	0%	80	31.2%	0	-	possibly_damaging(0.473)	tolerated(0.09)	neutral(0.453)	superfamily_Purple_Pase_N
ZNF155	7711	genome.wustl.edu	37	19	44500667	44500667	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003445.2	+1	validated	p.Q220*	0.000	420	0%	395	10.6%	9	11.1%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF229	7772	genome.wustl.edu	37	19	44932566	44932566	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014518.2	-1	validated	p.T797M	0.000	232	0%	241	17.4%	0	-	possibly_damaging(0.593)	deleterious(0.01)	deleterious(0.611)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SYMPK	8189	genome.wustl.edu	37	19	46338404	46338404	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004819.2	-1	reviewed	p.T442M	1.000	100	0%	115	29.6%	57	42.1%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	superfamily_ARM repeat
BCAT2	587	genome.wustl.edu	37	19	49299964	49299964	+	Silent	SNP	C	C	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001190.3	-1	reviewed	p.R312	0.934	21	0%	17	23.5%	72	40.2%	-	-	-	HMMPfam_Aminotran_4,superfamily_D-aminoacid aminotransferase-like PLP-dependent enzymes
NOSIP	51070	genome.wustl.edu	37	19	50059577	50059577	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_015953.3	-1	provisional	p.Q277	1.000	70	0%	83	10.8%	195	19.4%	-	-	-	NULL
MYH14	79784	genome.wustl.edu	37	19	50775825	50775825	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001077186.1	+1	reviewed	p.R1069W	0.990	59	0%	60	10%	89	19.1%	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
ZNF615	284370	genome.wustl.edu	37	19	52497257	52497257	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_198480.2	-1	provisional	p.R358C	0.031	263	0%	276	29.3%	4	25%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC388559	388559	genome.wustl.edu	37	19	53411187	53411187	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	XM_496322.5	-1	model	p.A112T	0.000	485	0.2%	478	13.2%	8	25%	-	-	-	NULL
ZNF550	162972	genome.wustl.edu	37	19	58058953	58058953	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001039654.1	-1	provisional	p.R179Q	0.019	324	0%	308	10.7%	8	12.5%	probably_damaging(0.998)	tolerated(1)	deleterious(0.474)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100130710	100130710	genome.wustl.edu	37	19	58153051	58153051	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	XM_001718544.2	-1	model	p.A181T	0.075	199	0%	203	11.3%	18	16.6%	-	-	-	NULL
ZNF552	79818	genome.wustl.edu	37	19	58320161	58320161	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_024762.3	-1	validated	p.A157	0.000	588	0%	498	14.7%	11	27.2%	-	-	-	NULL
RBBP9	10741	genome.wustl.edu	37	20	18476489	18476489	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_006606.2	-1	reviewed	p.P45	1.000	201	0%	217	25.8%	14	14.2%	-	-	-	HMMPfam_DUF1234,superfamily_alpha/beta-Hydrolases
THBD	7056	genome.wustl.edu	37	20	23028510	23028510	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000361.2	-1	reviewed	p.G544	0.000	43	0%	28	32.1%	9	0%	-	-	-	NULL
ZNF334	55713	genome.wustl.edu	37	20	45130930	45130930	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_018102.3	-1	validated	p.E350K	0.001	370	0.3%	367	18.5%	0	-	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF831	128611	genome.wustl.edu	37	20	57769615	57769615	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_178457.1	+1	provisional	p.P1181fs	0.992	-	-	-	-	-	-	-	-	-	NULL
PHACTR3	116154	genome.wustl.edu	37	20	58349367	58349367	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_080672.3	+1	reviewed	p.S332	0.985	266	0.4%	240	17.9%	0	-	-	-	-	NULL
PHACTR3	116154	genome.wustl.edu	37	20	58349442	58349442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_080672.3	+1	reviewed	p.K357N	0.049	363	0%	306	13.7%	0	-	possibly_damaging(0.863)	tolerated(0.17)	neutral(0.393)	NULL
KCNQ2	3785	genome.wustl.edu	37	20	62071056	62071056	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_172107.2	-1	reviewed	p.T274	0.750	101	0%	94	11.7%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RBM11	54033	genome.wustl.edu	37	21	15588530	15588530	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_144770.3	+1	validated	p.A8V	1.000	115	0%	123	14.6%	0	-	benign(0.003)	tolerated(0.13)	neutral(0.253)	superfamily_RNA-binding domain RBD
GRIK1	2897	genome.wustl.edu	37	21	31066220	31066220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000830.3	-1	reviewed	p.R94Q	0.998	294	0%	303	32.3%	0	-	possibly_damaging(0.921)	tolerated(0.23)	neutral(0.412)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
KRTAP25-1	100131902	genome.wustl.edu	37	21	31661714	31661714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001128598.1	-1	validated	p.R32H	0.000	272	0%	284	18.3%	0	-	benign(0.356)	-	-	NULL
C21orf59	56683	genome.wustl.edu	37	21	33974538	33974538	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000425336	-1	known	p.H116	0.000	248	0%	262	18.3%	5	20%	unknown(0)	-	-	NULL
GCFC1	94104	genome.wustl.edu	37	21	34134467	34134467	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_016631.3	-1	reviewed	p.R271C	1.000	374	0%	396	31.8%	3	0%	probably_damaging(0.999)	tolerated(0.15)	deleterious(0.732)	NULL
MED15	51586	genome.wustl.edu	37	22	20937674	20937674	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001003891.1	+1	reviewed	p.S577L	0.996	104	0%	86	31.4%	85	32.9%	probably_damaging(0.962)	deleterious(0.03)	deleterious(0.770)	NULL
BCR	613	genome.wustl.edu	37	22	23651650	23651650	+	Missense_Mutation	SNP	A	A	G	rs71316760		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004327.3	+1	reviewed	p.T1018A	0.971	33	18.2%	26	34.6%	104	15.3%	benign(0.055)	tolerated(0.36)	neutral(0.024)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
LRP5L	91355	genome.wustl.edu	37	22	25750681	25750681	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001135772.1	-1	validated	p.T179	0.271	254	0%	272	17.6%	9	22.2%	-	-	-	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,superfamily_YWTD domain
SF3A1	10291	genome.wustl.edu	37	22	30733844	30733844	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005877.4	-1	reviewed	p.V596I	1.000	83	0%	82	11%	97	11.3%	possibly_damaging(0.444)	-	-	NULL
SFI1	9814	genome.wustl.edu	37	22	32000374	32000374	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001007467.1	+1	validated	p.A654V	0.003	24	0%	22	31.8%	18	44.4%	benign(0.007)	deleterious(0.03)	neutral(0.364)	NULL
RBFOX2	23543	genome.wustl.edu	37	22	36142013	36142013	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001082578.1	-1	reviewed	p.Y423F	1.000	113	0%	98	14.3%	41	14.6%	possibly_damaging(0.942)	deleterious(0.01)	deleterious(0.792)	NULL
EP300	2033	genome.wustl.edu	37	22	41542813	41542813	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001429.3	+1	reviewed	p.P708	0.647	169	0%	164	12.8%	20	20%	-	-	-	NULL
ZBED4	9889	genome.wustl.edu	37	22	50280695	50280695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014838.2	+1	validated	p.V1129I	0.997	66	0%	56	17.9%	20	45%	benign(0.103)	tolerated(0.18)	neutral(0.064)	HMMPfam_hATC
ARSH	347527	genome.wustl.edu	37	X	2933377	2933377	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001011719.1	+1	validated	p.M236T	0.647	387	0%	403	29%	0	-	probably_damaging(0.98)	tolerated(0.26)	neutral(0.458)	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core
MID1	4281	genome.wustl.edu	37	X	10535360	10535360	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000381.2	-1	reviewed	p.N76	1.000	155	0%	136	15.4%	7	0%	-	-	-	superfamily_RING/U-box
ASB9	140462	genome.wustl.edu	37	X	15270503	15270503	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001031739.2	-1	reviewed	p.W102*	1.000	76	0%	83	14.5%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
GPR64	10149	genome.wustl.edu	37	X	19058338	19058338	+	Silent	SNP	A	A	G	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001079858.2	-1	validated	p.D41	0.054	422	0%	367	35.4%	2	0%	-	-	-	NULL
RPS6KA3	6197	genome.wustl.edu	37	X	20185716	20185716	+	Silent	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004586.2	-1	reviewed	p.H531	0.057	368	0%	357	10.6%	10	0%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
CNKSR2	22866	genome.wustl.edu	37	X	21667020	21667020	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_014927.3	+1	reviewed	p.S922T	1.000	119	0%	115	20%	0	-	benign(0)	tolerated(0.32)	neutral(0.024)	NULL
ZNF645	158506	genome.wustl.edu	37	X	22291388	22291388	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_152577.2	+1	provisional	p.P94T	0.199	82	0%	85	12.9%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	HMMSmart_RING,superfamily_SSF57850
MAGEB6	158809	genome.wustl.edu	37	X	26212647	26212647	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_173523.2	+1	reviewed	p.E228D	0.000	112	0%	69	30.4%	0	-	benign(0.016)	tolerated(0.13)	neutral(0.253)	HMMPfam_MAGE
BCOR	54880	genome.wustl.edu	37	X	39932429	39932429	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001123385.1	-1	reviewed	p.M724V	1.000	118	0%	100	13%	4	0%	possibly_damaging(0.952)	deleterious(0)	deleterious(0.840)	NULL
USP9X	8239	genome.wustl.edu	37	X	41057933	41057933	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001039590.2	+1	reviewed	p.G1511	0.997	254	0%	247	10.1%	14	14.2%	-	-	-	NULL
LOC729275	729275	genome.wustl.edu	37	X	48433430	48433430	+	RNA	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	XR_078586.1	-1	model	NULL	0.000	22	0%	21	28.6%	3	0%	-	-	-	-
SUV39H1	6839	genome.wustl.edu	37	X	48559022	48559022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_003173.2	+1	reviewed	p.V236M	0.996	60	0%	59	16.9%	9	55.5%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	superfamily_SET domain
CLCN5	1184	genome.wustl.edu	37	X	49840586	49840586	+	Silent	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001127898.1	+1	reviewed	p.D184	1.000	382	0%	431	15.8%	1	0%	-	-	-	superfamily_Clc chloride channel
SNX12	29934	genome.wustl.edu	37	X	70288021	70288021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_013346.2	-1	reviewed	p.R46C	1.000	103	0%	78	21.8%	40	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CHRDL1	91851	genome.wustl.edu	37	X	109922563	109922563	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001143981.1	-1	reviewed	e10+1	1.000	426	0%	402	29.6%	2	100%	-	-	-	-
ALG13	79868	genome.wustl.edu	37	X	110968236	110968236	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	ENST00000394780	+1	known	p.S559N	0.533	563	0%	597	17.3%	9	33.3%	possibly_damaging(0.55)	tolerated(0.4)	neutral(0.203)	NULL
ARHGEF6	9459	genome.wustl.edu	37	X	135861592	135861592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_004840.2	-1	reviewed	p.C77Y	1.000	474	0%	448	19.6%	4	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
MAGEC1	9947	genome.wustl.edu	37	X	140994741	140994741	+	Silent	SNP	T	T	C	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_005462.4	+1	reviewed	p.P517	0.999	315	0%	274	20.8%	0	-	-	-	-	NULL
ATP6AP1	537	genome.wustl.edu	37	X	153663830	153663830	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_001183.4	+1	reviewed	p.Q394H	0.001	43	0%	48	16.7%	245	0%	benign(0.003)	tolerated(0.17)	neutral(0.059)	HMMPfam_ATP-synt_S1
G6PD	2539	genome.wustl.edu	37	X	153760967	153760967	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A16F-01A-11D-A12J-09	TCGA-D1-A16F-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2eca7ba9-fdbd-4208-82a7-64055597230b	f1aab667-9406-4030-be2a-d7690ac8a57b	NM_000402.3	-1	reviewed	p.E398K	0.995	76	0%	38	13.2%	92	36.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_G6PD_C,superfamily_SSF55347
