Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CHD5	26038	genome.wustl.edu	37	1	6194862	6194862	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_015557.1	-1	provisional	p.G976	0.547	260	0%	175	10.3%	0	-	-	-	-	HMMPfam_SNF2_N
PTCHD2	57540	genome.wustl.edu	37	1	11580754	11580754	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_020780.1	+1	validated	p.V737	0.993	43	0%	41	46.3%	1	100%	-	-	-	HMMPfam_Patched
HIVEP3	59269	genome.wustl.edu	37	1	42048023	42048023	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_024503.3	-1	validated	p.S816R	0.046	51	0%	69	18.8%	1	0%	possibly_damaging(0.612)	tolerated(0.12)	deleterious(0.473)	NULL
GLMN	11146	genome.wustl.edu	37	1	92754482	92754482	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_053274.2	-1	reviewed	p.E207	0.998	272	0%	274	32.1%	5	60%	-	-	-	HMMPfam_FKBP12
ADAM15	8751	genome.wustl.edu	37	1	155034447	155034447	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_207197.1	+1	reviewed	p.P807R	0.974	40	0%	54	11.1%	231	16.4%	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	NULL
CD1E	913	genome.wustl.edu	37	1	158324229	158324230	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_030893.2	+1	reviewed	p.T42fs	0.226:0.234	-	-	-	-	-	-	-	-	-	superfamily_MHC antigen-recognition domain
IPO9	55705	genome.wustl.edu	37	1	201843466	201843466	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_018085.4	+1	validated	p.A933	0.546	134	0%	157	38.9%	74	47.2%	-	-	-	superfamily_ARM repeat
PPFIA4	8497	genome.wustl.edu	37	1	203023240	203023241	+	Frame_Shift_Ins	INS	-	-	GC	rs10635298	byCluster;by1000genomes	TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	ENST00000447715	+1	known	p.P584fs	0.005:0.000	-	-	-	-	-	-	-	-	-	NULL
POLR1B	84172	genome.wustl.edu	37	2	113309368	113309368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_019014.4	+1	validated	p.S260Y	1.000	146	0%	151	45%	6	66.6%	possibly_damaging(0.808)	deleterious(0)	deleterious(0.748)	HMMPfam_RNA_pol_Rpb2_1,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
GLB1L	79411	genome.wustl.edu	37	2	220107953	220107953	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_024506.3	-1	provisional	p.S52R	1.000	70	0%	70	42.9%	3	33.3%	unknown(0)	-	-	HMMPfam_Glyco_hydro_35,superfamily_(Trans)glycosidases
DOCK10	55619	genome.wustl.edu	37	2	225740826	225740826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_014689.2	-1	validated	p.R287H	1.000	199	0%	184	43.5%	0	-	possibly_damaging(0.579)	tolerated(0.05)	deleterious(0.544)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
LRRFIP1	9208	genome.wustl.edu	37	2	238672541	238672541	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001137552.1	+1	validated	p.E730fs	0.000	-	-	-	-	-	-	-	-	-	NULL
TADA3	10474	genome.wustl.edu	37	3	9831273	9831273	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_006354.2	-1	reviewed	p.C162S	1.000	79	0%	62	46.8%	74	50%	possibly_damaging(0.819)	deleterious(0.01)	deleterious(0.715)	NULL
TRAK1	22906	genome.wustl.edu	37	3	42264472	42264472	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001042646.1	+1	validated	p.S702N	0.998	98	1%	123	43.1%	33	69.6%	benign(0.005)	tolerated(0.13)	neutral(0.253)	NULL
SLITRK3	22865	genome.wustl.edu	37	3	164907829	164907829	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_014926.2	-1	validated	p.P264T	1.000	109	0%	112	41.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_LRRCT,superfamily_SSF52058
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_006218.2	+1	reviewed	p.E542K	1.000	215	0.5%	133	71.4%	2	100%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
NAA15	80155	genome.wustl.edu	37	4	140300008	140300008	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_057175.3	+1	validated	p.A719fs	1.000	-	-	-	-	-	-	-	-	-	NULL
CTXN3	613212	genome.wustl.edu	37	5	126993261	126993261	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001048252.2	+1	validated	p.N16K	0.001	125	0%	140	47.9%	0	-	possibly_damaging(0.661)	tolerated(0.11)	deleterious(0.505)	NULL
PCDHGA4	56111	genome.wustl.edu	37	5	140735922	140735922	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_018917.2	+1	reviewed	p.S385	0.374	74	0%	72	27.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
C5orf45	51149	genome.wustl.edu	37	5	179280247	179280247	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	ENST00000403396	-1	known	p.E68K	0.000	23	0%	25	24%	0	-	unknown(0)	-	-	NULL
RIMS1	22999	genome.wustl.edu	37	6	73108753	73108753	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_014989.4	+1	reviewed	p.Q1606L	1.000	363	0%	325	46.8%	0	-	probably_damaging(0.972)	deleterious(0)	deleterious(0.859)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
EPB41L2	2037	genome.wustl.edu	37	6	131191021	131191021	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001431.3	-1	validated	p.T763	0.000	148	0%	187	38.5%	128	38.2%	-	-	-	NULL
TAAR6	319100	genome.wustl.edu	37	6	132891535	132891535	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_175067.1	+1	reviewed	p.I25M	0.000	372	0%	412	41.3%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_SSF81321
PDCD2	5134	genome.wustl.edu	37	6	170892198	170892198	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_002598.2	-1	reviewed	p.I202S	0.000	433	0%	463	44.3%	99	46.4%	benign(0)	tolerated(0.74)	neutral(0.002)	HMMPfam_PDCD2_C
PDGFA	5154	genome.wustl.edu	37	7	540834	540834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_002607.5	-1	reviewed	p.V167I	1.000	287	0%	276	34.4%	20	60%	possibly_damaging(0.896)	tolerated(0.1)	deleterious(0.640)	HMMPfam_PDGF,HMMSmart_SM00141,superfamily_Cystine-knot cytokines
PRKAR1B	5575	genome.wustl.edu	37	7	624198	624198	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_002735.2	-1	validated	p.T239M	0.999	101	0%	89	38.2%	83	48.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_cNMP_binding,HMMSmart_cNMP,superfamily_cNMP_binding
HEATR2	54919	genome.wustl.edu	37	7	801433	801433	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_017802.3	+1	validated	p.V505A	0.349	66	0%	96	38.5%	36	52.7%	benign(0.071)	deleterious(0.02)	neutral(0.388)	superfamily_ARM repeat
BRAT1	221927	genome.wustl.edu	37	7	2586990	2586990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_152743.2	-1	provisional	p.A84T	0.897	50	0%	53	37.7%	61	45.9%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_ARM repeat
CCDC129	223075	genome.wustl.edu	37	7	31592725	31592725	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_194300.2	+1	validated	p.S29R	0.000	152	0%	151	11.3%	3	0%	benign(0)	tolerated(1)	-	NULL
AKAP9	10142	genome.wustl.edu	37	7	91652174	91652174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_005751.4	+1	reviewed	p.K1333N	0.014	82	0%	105	40%	2	0%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
PRRT4	401399	genome.wustl.edu	37	7	127999459	127999459	+	Missense_Mutation	SNP	G	G	A	rs145413607	by1000genomes	TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001114726.2	-1	validated	p.T196M	0.351	19	0%	25	36%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
NOL8	55035	genome.wustl.edu	37	9	95063978	95063978	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_017948.5	-1	validated	p.K1010	0.001	217	0%	143	79.7%	9	77.7%	-	-	-	NULL
NOTCH1	4851	genome.wustl.edu	37	9	139402446	139402446	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_017617.3	-1	reviewed	p.G1157	0.118	21	0%	22	86.4%	9	66.6%	-	-	-	HMMSmart_EGF_CA,HMMPfam_EGF,superfamily_SSF57196
DDX50	79009	genome.wustl.edu	37	10	70661146	70661146	+	Silent	SNP	T	T	G	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_024045.1	+1	reviewed	p.P2	0.999	39	0%	49	46.9%	14	50%	-	-	-	NULL
LIPN	643418	genome.wustl.edu	37	10	90537860	90537860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001102469.1	+1	validated	p.A353V	0.992	291	0%	35	14.3%	0	-	benign(0.001)	tolerated(0.22)	neutral(0.042)	HMMPfam_Abhydrolase_1,superfamily_SSF53474
PLCE1	51196	genome.wustl.edu	37	10	96043587	96043587	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_016341.3	+1	reviewed	p.N1612	0.204	249	0%	139	69.1%	1	100%	-	-	-	superfamily_PLC-like phosphodiesterases
JAKMIP3	282973	genome.wustl.edu	37	10	133967268	133967268	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001105521.2	+1	provisional	p.L691	0.736	73	0%	41	85.4%	0	-	-	-	-	NULL
ENSG00000221553	0	genome.wustl.edu	37	11	67700745	67700745	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	ENST00000408626	+1	novel	NULL	0.217	76	0%	79	35.4%	0	-	-	-	-	-
ARHGAP20	57569	genome.wustl.edu	37	11	110477468	110477468	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_020809.2	-1	validated	p.E261*	1.000	118	0%	164	43.9%	0	-	-	-	-	HMMPfam_RA
MANSC1	54682	genome.wustl.edu	37	12	12483036	12483036	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_018050.2	-1	validated	p.I407	0.019	137	0%	172	39.5%	103	20.3%	-	-	-	NULL
SLCO1C1	53919	genome.wustl.edu	37	12	20893265	20893265	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_017435.4	+1	reviewed	p.S566T	1.000	350	0%	441	32.9%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
TUBA1A	7846	genome.wustl.edu	37	12	49579493	49579493	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_006009.2	-1	reviewed	p.I219S	1.000	255	0%	292	45.2%	127	29.9%	possibly_damaging(0.564)	deleterious(0)	deleterious(0.637)	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like
OR6C65	403282	genome.wustl.edu	37	12	55794637	55794637	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001005518.1	+1	provisional	p.E109K	0.811	130	0%	121	38%	0	-	possibly_damaging(0.925)	deleterious(0.01)	deleterious(0.779)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
MTUS2	23281	genome.wustl.edu	37	13	30071441	30071441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001033602.2	+1	validated	p.A1226T	1.000	76	0%	75	26.7%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
FOXO1	2308	genome.wustl.edu	37	13	41133979	41133979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_002015.3	-1	reviewed	p.S550L	0.815	157	0%	140	35%	16	25%	benign(0.075)	tolerated(0.11)	neutral(0.277)	NULL
SPTBN5	51332	genome.wustl.edu	37	15	42149884	42149884	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_016642.2	-1	validated	p.G2716R	0.039	31	0%	20	85%	1	100%	possibly_damaging(0.88)	tolerated(0.16)	neutral(0.403)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
CACNG3	10368	genome.wustl.edu	37	16	24373179	24373179	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_006539.2	+1	reviewed	p.V315I	1.000	27	0%	29	44.8%	0	-	possibly_damaging(0.791)	deleterious(0.01)	deleterious(0.702)	NULL
USP6	9098	genome.wustl.edu	37	17	5038539	5038539	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_004505.2	+1	validated	p.L169	0.998	298	0%	328	85.4%	0	-	-	-	-	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
TP53	7157	genome.wustl.edu	37	17	7578429	7578429	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_000546.4	-1	reviewed	p.Q167fs	0.986	-	-	-	-	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
DNAH2	146754	genome.wustl.edu	37	17	7678610	7678610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_020877.2	+1	validated	p.G1591S	1.000	241	0%	190	84.7%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_DHC_N2
LGALS9B	284194	genome.wustl.edu	37	17	20370782	20370783	+	Frame_Shift_Ins	INS	-	-	TC	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_001042685.1	-1	validated	p.M1fs	0.878:0.831	-	-	-	-	-	-	-	-	-	NULL
C17orf28	283987	genome.wustl.edu	37	17	72951984	72951984	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_030630.2	-1	validated	p.F513L	1.000	247	0%	291	89.7%	128	99.2%	possibly_damaging(0.903)	deleterious(0)	deleterious(0.802)	HMMPfam_Hid1
FHOD3	80206	genome.wustl.edu	37	18	34205670	34205670	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_025135.2	+1	validated	p.A385V	0.605	58	0%	48	14.6%	0	-	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
SERPINB3	6317	genome.wustl.edu	37	18	61323250	61323250	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_006919.2	-1	validated	p.L272	0.000	253	0%	132	68.9%	2	0%	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
FFAR3	2865	genome.wustl.edu	37	19	35850313	35850313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_005304.3	+1	validated	p.R174Q	0.014	102	0%	134	20.1%	0	-	benign(0.058)	tolerated(0.59)	neutral(0.008)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF574	64763	genome.wustl.edu	37	19	42585390	42585390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_022752.5	+1	validated	p.V878L	1.000	30	0%	27	37%	68	48.5%	benign(0.014)	tolerated(0.3)	neutral(0.029)	NULL
CCDC114	93233	genome.wustl.edu	37	19	48814869	48814869	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_144577.3	-1	validated	p.L143	1.000	108	0%	154	46.1%	0	-	-	-	-	NULL
JAG1	182	genome.wustl.edu	37	20	10639252	10639252	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_000214.2	-1	reviewed	p.T186	1.000	230	0%	247	37.7%	4	25%	-	-	-	HMMPfam_DSL,HMMSmart_DSL
FOXA2	3170	genome.wustl.edu	37	20	22563132	22563132	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_021784.4	-1	reviewed	p.E250*	1.000	26	0%	25	76%	54	87%	-	-	-	HMMPfam_Fork_head,HMMSmart_FH,superfamily_SSF46785
CYP2D6	1565	genome.wustl.edu	37	22	42523581	42523581	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_000106.4	-1	reviewed	p.M347I	0.936	64	0%	63	79.4%	2	100%	benign(0.072)	tolerated(0.14)	neutral(0.255)	HMMPfam_p450,superfamily_Cytochrome_P450
MAGEB6	158809	genome.wustl.edu	37	X	26213018	26213018	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_173523.2	+1	reviewed	p.P352L	0.025	341	0%	317	30%	0	-	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_MAGE
WNK3	65267	genome.wustl.edu	37	X	54319596	54319596	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17K-01A-11D-A12J-09	TCGA-D1-A17K-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	50723947-4ab0-4e78-8b30-204b60c24bfb	2b39f34d-3657-46be-bb34-89ee658b77bd	NM_020922.4	-1	reviewed	p.L620V	0.538	264	0%	248	10.9%	0	-	benign(0.027)	tolerated(0.42)	neutral(0.015)	superfamily_Kinase_like
