Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
KIAA1751	85452	genome.wustl.edu	37	1	1888083	1888083	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001080484.1	-1	predicted	p.D664	0.000	98	0%	101	28.7%	0	-	-	-	-	NULL
LZIC	84328	genome.wustl.edu	37	1	9992023	9992023	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032368.3	-1	provisional	p.A147V	0.986	148	0%	178	25.8%	11	36.3%	benign(0)	tolerated(0.24)	neutral(0.037)	HMMPfam_ICAT,superfamily_beta-catenin-interacting protein ICAT
EXOSC10	5394	genome.wustl.edu	37	1	11134035	11134035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001001998.1	-1	validated	p.V705I	0.778	212	0%	247	15.8%	42	21.4%	benign(0.005)	tolerated(0.65)	neutral(0.003)	NULL
VPS13D	55187	genome.wustl.edu	37	1	12428630	12428630	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015378.2	+1	reviewed	p.I3519N	1.000	231	0%	253	26.1%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1162
UBR4	23352	genome.wustl.edu	37	1	19441313	19441313	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020765.2	-1	validated	p.R3732W	1.000	149	0%	169	19.5%	9	55.5%	probably_damaging(1)	tolerated(0.1)	deleterious(0.786)	superfamily_ARM repeat
AIM1L	55057	genome.wustl.edu	37	1	26658032	26658032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001039775.2	-1	validated	p.A376V	1.000	85	0%	102	10.8%	4	0%	probably_damaging(0.981)	deleterious(0.01)	deleterious(0.831)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
PHACTR4	65979	genome.wustl.edu	37	1	28818222	28818222	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_023923.3	+1	reviewed	p.Y657H	1.000	108	0%	127	21.3%	18	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZMYM6	9204	genome.wustl.edu	37	1	35480309	35480309	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_007167.3	-1	validated	p.A262T	0.070	225	0%	273	18.3%	0	-	probably_damaging(0.959)	tolerated(0.65)	neutral(0.406)	HMMPfam_zf-FCS
ZMYM4	9202	genome.wustl.edu	37	1	35790987	35790987	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005095.2	+1	validated	p.F22	1.000	552	0%	672	17.6%	2	0%	-	-	-	NULL
MPL	4352	genome.wustl.edu	37	1	43818392	43818392	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005373.2	+1	reviewed	p.T619	0.435	98	1%	143	16.8%	0	-	-	-	-	NULL
PARS2	25973	genome.wustl.edu	37	1	55224666	55224666	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152268.3	-1	validated	p.L57F	0.252	42	0%	78	11.5%	2	0%	benign(0.005)	tolerated(0.26)	neutral(0.034)	superfamily_Class II aaRS and biotin synthetases
C1orf168	199920	genome.wustl.edu	37	1	57221596	57221596	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001004303.4	-1	validated	p.G368E	0.978	360	0%	379	16.4%	1	100%	benign(0.003)	tolerated(0.32)	neutral(0.024)	NULL
DOCK7	85440	genome.wustl.edu	37	1	62961354	62961354	+	Splice_Site	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_033407.2	-1	validated	e38-2	1.000	199	0%	300	20%	0	-	-	-	-	-
C1orf141	400757	genome.wustl.edu	37	1	67558921	67558921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001013674.1	-1	predicted	p.L324I	0.002	231	0%	347	22.8%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
NEGR1	257194	genome.wustl.edu	37	1	72748071	72748072	+	Frame_Shift_Del	DEL	TG	TG	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_173808.2	-1	validated	p.Q36fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
USP33	23032	genome.wustl.edu	37	1	78194166	78194166	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015017.3	-1	validated	p.M348V	1.000	292	0%	400	43.8%	3	66.6%	benign(0.104)	tolerated(0.21)	neutral(0.052)	HMMPfam_UCH,superfamily_Cysteine proteinases
LOC128322	128322	genome.wustl.edu	37	1	113290796	113290796	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	XM_060943.1	+1	model	p.T27M	0.998	65	0%	30	33.3%	0	-	-	-	-	HMMPfam_NTF2,superfamily_NTF2-like
TRIM33	51592	genome.wustl.edu	37	1	114942183	114942183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015906.3	-1	reviewed	p.V1006M	1.000	334	0%	376	15.4%	3	0%	probably_damaging(0.991)	tolerated(0.17)	deleterious(0.503)	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain
SELENBP1	8991	genome.wustl.edu	37	1	151341982	151341982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003944.2	-1	reviewed	p.G37D	0.919	65	0%	104	10.6%	220	16.3%	benign(0.001)	tolerated(0.7)	neutral(0.002)	HMMPfam_SBP56,superfamily_Cyt_cd1_haem_C
POGZ	23126	genome.wustl.edu	37	1	151381210	151381210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015100.2	-1	reviewed	p.R674H	1.000	724	0.1%	1301	17%	15	6.6%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	NULL
TDRKH	11022	genome.wustl.edu	37	1	151747185	151747185	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001083963.1	-1	validated	e11+1	1.000	478	0%	844	26.7%	0	-	-	-	-	-
IVL	3713	genome.wustl.edu	37	1	152883704	152883704	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005547.2	+1	reviewed	p.E477D	0.000	236	0%	287	10.5%	8	12.5%	possibly_damaging(0.94)	tolerated(0.18)	neutral(0.441)	HMMPfam_Involucrin
UBAP2L	9898	genome.wustl.edu	37	1	154224128	154224128	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014847.3	+1	validated	p.S555G	1.000	94	0%	173	19.1%	70	11.4%	possibly_damaging(0.88)	tolerated(0.29)	neutral(0.372)	NULL
PYGO2	90780	genome.wustl.edu	37	1	154931375	154931375	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_138300.3	-1	validated	p.G367	1.000	51	0%	95	15.8%	42	4.7%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
ASH1L	55870	genome.wustl.edu	37	1	155448184	155448184	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018489.2	-1	reviewed	p.R1493C	0.999	369	0%	676	20.3%	7	14.2%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
YY1AP1	55249	genome.wustl.edu	37	1	155631126	155631127	+	Frame_Shift_Del	DEL	TC	TC	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	TC	TC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_139118.1	-1	reviewed	p.E369fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
KIAA0907	22889	genome.wustl.edu	37	1	155896909	155896909	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014949.2	-1	predicted	p.R168L	1.000	299	0%	544	15.8%	8	25%	benign(0.312)	deleterious(0.01)	deleterious(0.503)	superfamily_Eukaryotic type KH-domain (KH-domain type I)
ETV3	2117	genome.wustl.edu	37	1	157105447	157105447	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001145312.1	-1	validated	p.Q34*	1.000	285	0.4%	428	15%	8	12.5%	-	-	-	"HMMPfam_Ets,HMMSmart_SM00413,superfamily_""Winged helix"" DNA-binding domain"
IGSF9	57549	genome.wustl.edu	37	1	159900173	159900173	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001135050.1	-1	validated	p.L624	0.869	73	0%	104	34.6%	13	61.5%	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
SLAMF7	57823	genome.wustl.edu	37	1	160722917	160722917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_021181.3	+1	provisional	p.L320F	0.000	353	0%	648	11.7%	2	0%	possibly_damaging(0.92)	tolerated(0.16)	neutral(0.430)	NULL
C1orf226	400793	genome.wustl.edu	37	1	162353173	162353173	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001085375.1	+1	validated	p.D173	0.000	71	0%	100	17%	12	0%	-	-	-	NULL
FAM5C	339479	genome.wustl.edu	37	1	190423928	190423928	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_199051.1	-1	provisional	p.A31	0.880	142	0%	346	16.8%	0	-	-	-	-	NULL
ATP6V1G3	127124	genome.wustl.edu	37	1	198492614	198492614	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_133262.2	-1	reviewed	p.Y88	0.953	606	0%	928	25.9%	0	-	-	-	-	HMMPfam_V-ATPase_G
NUAK2	81788	genome.wustl.edu	37	1	205277761	205277779	+	Frame_Shift_Del	DEL	TCGCGCTCACTGAGCTGCT	TCGCGCTCACTGAGCTGCT	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	TCGCGCTCACTGAGCTGCT	TCGCGCTCACTGAGCTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_030952.1	-1	provisional	p.Q146fs	0.988:0.988:0.001:0.055:0.932:0.957:1.000:1.000:0.890:0.978:0.983:0.990:1.000:0.994:0.792:0.808:0.993:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
PTPN14	5784	genome.wustl.edu	37	1	214537992	214537992	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005401.4	-1	reviewed	p.R1100C	1.000	145	0%	178	14.6%	4	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
DISP1	84976	genome.wustl.edu	37	1	223177026	223177026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032890.2	+1	reviewed	p.R763C	1.000	117	0%	212	12.3%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Patched
PARP1	142	genome.wustl.edu	37	1	226564877	226564877	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001618.3	-1	reviewed	p.A625T	0.989	249	0%	455	15.6%	61	13.1%	benign(0)	tolerated(0.56)	neutral(0.006)	HMMPfam_WGR,HMMSmart_SM00773
OBSCN	84033	genome.wustl.edu	37	1	228503673	228503673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001098623.1	+1	reviewed	p.V4380M	0.879	33	0%	33	33.3%	3	33.3%	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
PGBD5	79605	genome.wustl.edu	37	1	230461114	230461114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_024554.3	-1	reviewed	p.V471M	1.000	134	0%	280	29.6%	0	-	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	NULL
C1orf124	83932	genome.wustl.edu	37	1	231483639	231483639	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032018.4	+1	validated	p.R140C	1.000	222	0%	509	18.1%	10	10%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMSmart_SM00731,HMMPfam_SprT-like
SIPA1L2	57568	genome.wustl.edu	37	1	232551324	232551324	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020808.3	-1	validated	p.A1560T	0.941	134	0%	239	11.3%	52	23%	benign(0)	tolerated(0.21)	neutral(0.044)	NULL
MBOAT2	129642	genome.wustl.edu	37	2	9008641	9008641	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_138799.2	-1	validated	p.G308W	1.000	316	0%	365	26.6%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBOAT
ATP6V1C2	245973	genome.wustl.edu	37	2	10915114	10915114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001039362.1	+1	reviewed	p.R248C	0.992	468	0%	532	17.9%	24	8.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_V-ATPase_C
APOB	338	genome.wustl.edu	37	2	21231917	21231917	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000384.2	-1	reviewed	p.Q2608R	0.299	113	0%	130	20%	0	-	benign(0.001)	-	-	NULL
SLC5A6	8884	genome.wustl.edu	37	2	27430465	27430465	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_021095.2	-1	validated	p.S18	0.006	178	0%	168	21.4%	31	35.4%	-	-	-	NULL
SLC30A3	7781	genome.wustl.edu	37	2	27481121	27481121	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003459.4	-1	validated	p.A111V	1.000	37	0%	49	51%	1	100%	benign(0.001)	tolerated(0.12)	neutral(0.261)	HMMPfam_Cation_efflux
ZNF512	84450	genome.wustl.edu	37	2	27824260	27824260	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032434.2	+1	validated	p.R207H	1.000	681	0%	773	42.8%	3	66.6%	benign(0.009)	tolerated(0.18)	neutral(0.057)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2
CCDC121	79635	genome.wustl.edu	37	2	27850576	27850576	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001142683.2	-1	validated	p.L193I	0.000	352	0.3%	452	15.3%	2	0%	possibly_damaging(0.707)	tolerated(0.4)	neutral(0.271)	NULL
LTBP1	4052	genome.wustl.edu	37	2	33526605	33526605	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000415140	+1	known	p.S87N	0.998	276	0%	363	22.9%	22	9%	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
THADA	63892	genome.wustl.edu	37	2	43625142	43625142	+	Missense_Mutation	SNP	G	G	A	rs182266798	by1000genomes	TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001083953.1	-1	validated	p.R1399W	1.000	324	0%	472	18.9%	24	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
REL	5966	genome.wustl.edu	37	2	61118871	61118871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002908.2	+1	validated	p.R22C	1.000	361	0.3%	423	18.4%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P53_like_DNA_bnd,HMMPfam_RHD
ATP6V1B1	525	genome.wustl.edu	37	2	71189967	71189967	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001692.3	+1	reviewed	p.Q282	1.000	132	0%	126	23.8%	5	20%	-	-	-	HMMPfam_ATP-synt_ab,superfamily_SSF52540
RAB11FIP5	26056	genome.wustl.edu	37	2	73302805	73302805	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015470.2	-1	validated	p.H602	0.998	38	0%	47	19.1%	10	30%	-	-	-	HMMPfam_RBD-FIP
NOTO	344022	genome.wustl.edu	37	2	73435675	73435675	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001134462.1	+1	provisional	p.K177I	0.946	233	0%	292	14.4%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
REG3G	130120	genome.wustl.edu	37	2	79253245	79253245	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001008387.1	+1	validated	p.S9N	0.006	293	0%	385	20.3%	0	-	benign(0.013)	tolerated(0.34)	neutral(0.024)	NULL
ATOH8	84913	genome.wustl.edu	37	2	85991300	85991300	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032827.6	+1	validated	p.R319C	1.000	30	0%	29	20.7%	4	75%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LOC730268	730268	genome.wustl.edu	37	2	88037366	88037366	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	XM_002342213.1	+1	model	p.I648F	1.000	796	0%	983	8.7%	2	0%	-	-	-	NULL
CIAO1	9391	genome.wustl.edu	37	2	96935008	96935008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004804.2	+1	validated	p.V232M	1.000	259	0%	280	18.9%	39	12.8%	possibly_damaging(0.907)	tolerated(0.11)	deleterious(0.632)	superfamily_WD40_like
SCTR	6344	genome.wustl.edu	37	2	120204406	120204406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002980.2	-1	reviewed	p.V357I	0.415	180	0%	163	18.4%	1	100%	benign(0.006)	tolerated(0.31)	neutral(0.027)	HMMPfam_7tm_2,superfamily_Family A G protein-coupled receptor-like
GLI2	2736	genome.wustl.edu	37	2	121747795	121747795	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005270.4	+1	reviewed	p.D1435	0.012	14	0%	31	22.6%	0	-	-	-	-	NULL
UGGT1	56886	genome.wustl.edu	37	2	128877942	128877942	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020120.3	+1	validated	p.P295	0.994	194	0%	253	21.7%	2	0%	-	-	-	NULL
FAM123C	205147	genome.wustl.edu	37	2	131520783	131520783	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001105193.1	+1	validated	p.V380M	0.000	42	0%	67	46.3%	0	-	benign(0.073)	deleterious(0.01)	neutral(0.411)	HMMPfam_WTX
NEB	4703	genome.wustl.edu	37	2	152466600	152466600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004543.4	-1	reviewed	p.G3775D	1.000	439	0.2%	539	41.4%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Nebulin
GALNT5	11227	genome.wustl.edu	37	2	158115162	158115162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014568.1	+1	provisional	p.R190C	0.000	54	0%	82	24.4%	0	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
LRP2	4036	genome.wustl.edu	37	2	170113733	170113733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004525.2	-1	reviewed	p.R847H	1.000	227	0%	263	34.6%	0	-	possibly_damaging(0.444)	deleterious(0.04)	deleterious(0.494)	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825
PPIG	9360	genome.wustl.edu	37	2	170463635	170463635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004792.2	+1	validated	p.S89F	1.000	470	0%	513	31.6%	10	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
GORASP2	26003	genome.wustl.edu	37	2	171819366	171819366	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015530.3	+1	reviewed	p.A310P	0.973	293	0.3%	315	34.9%	128	46.8%	possibly_damaging(0.674)	tolerated(0.24)	neutral(0.277)	HMMPfam_GRASP55_65
TTN	7273	genome.wustl.edu	37	2	179571211	179571211	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000356127	-1	known	p.I8553N	1.000	542	0%	614	21.5%	0	-	unknown(0)	-	-	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197654703	197654703	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_012086.2	-1	provisional	p.A209	1.000	338	0%	487	24%	6	33.3%	-	-	-	HMMSmart_SM00028,superfamily_Protein prenylyltransferase
SF3B1	23451	genome.wustl.edu	37	2	198265158	198265158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_012433.2	-1	reviewed	p.D907Y	1.000	48	0%	92	44.6%	71	40.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM repeat
TUBA4A	7277	genome.wustl.edu	37	2	220115131	220115133	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006000.1	-1	reviewed	p.K430in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	superfamily_Tubulin C-terminal domain-like
CUL3	8452	genome.wustl.edu	37	2	225376111	225376111	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003590.3	-1	validated	p.N281	1.000	598	0%	664	17.2%	18	38.8%	-	-	-	HMMPfam_Cullin,superfamily_Cullin repeat
COL4A4	1286	genome.wustl.edu	37	2	227872777	227872777	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000092.4	-1	reviewed	p.P1589L	1.000	40	0%	43	32.6%	0	-	unknown(0)	deleterious(0)	-	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like
C2orf83	56918	genome.wustl.edu	37	2	228476206	228476206	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020161.3	-1	validated	p.S119	0.000	164	0%	194	23.2%	0	-	-	-	-	NULL
MLPH	79083	genome.wustl.edu	37	2	238451249	238451249	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_024101.5	+1	reviewed	p.A496T	0.682	62	0%	52	25%	62	25.8%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CAPN10	11132	genome.wustl.edu	37	2	241528770	241528770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_023083.2	+1	reviewed	p.A51V	0.790	71	0%	74	12.2%	3	33.3%	possibly_damaging(0.736)	tolerated(0.06)	deleterious(0.592)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
ITPR1	3708	genome.wustl.edu	37	3	4735413	4735413	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001099952.2	+1	reviewed	p.D1414	1.000	43	0%	61	14.8%	1	0%	-	-	-	NULL
SCN10A	6336	genome.wustl.edu	37	3	38739285	38739285	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006514.2	-1	validated	p.K1809R	0.998	120	0%	167	15.6%	0	-	possibly_damaging(0.947)	tolerated(0.06)	deleterious(0.713)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266097	41266097	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001098209.1	+1	reviewed	p.D32N	1.000	146	0%	141	14.9%	73	32.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTNNB1	1499	genome.wustl.edu	37	3	41266104	41266104	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001098209.1	+1	reviewed	p.G34V	1.000	139	0%	149	18.8%	82	21.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DHX30	22907	genome.wustl.edu	37	3	47891405	47891405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_138615.2	+1	reviewed	p.R1127Q	0.999	35	0%	33	21.2%	76	36.8%	benign(0.051)	tolerated(0.09)	neutral(0.299)	NULL
RAD54L2	23132	genome.wustl.edu	37	3	51624506	51624508	+	In_Frame_Del	DEL	GAG	GAG	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015106.2	+1	validated	p.E27in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
DNAH1	25981	genome.wustl.edu	37	3	52409266	52409266	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015512.4	+1	validated	p.K2332N	0.998	55	0%	63	25.4%	0	-	benign(0.406)	tolerated(0.13)	neutral(0.383)	HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
CACNA1D	776	genome.wustl.edu	37	3	53757969	53757969	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000720.2	+1	validated	p.T701	0.118	325	0%	393	20.6%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_SSF81324
CACNA1D	776	genome.wustl.edu	37	3	53844073	53844073	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000720.2	+1	validated	p.S2000	0.228	42	0%	39	20.5%	2	0%	-	-	-	NULL
ATP6V1A	523	genome.wustl.edu	37	3	113499957	113499957	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001690.2	+1	reviewed	p.S48I	0.998	338	0.3%	436	17%	8	25%	benign(0.011)	tolerated(0.22)	neutral(0.043)	HMMPfam_ATP-synt_ab_N,superfamily_N-terminal domain of alpha and beta subunits of F1 ATP synthase
POLQ	10721	genome.wustl.edu	37	3	121256010	121256010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_199420.3	-1	validated	p.R226Q	1.000	289	0.3%	395	26.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GOLGB1	2804	genome.wustl.edu	37	3	121388114	121388114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004487.3	-1	validated	p.G3084D	0.055	264	0%	292	15.4%	32	28.1%	benign(0.002)	deleterious(0.04)	neutral(0.349)	NULL
MYLK	4638	genome.wustl.edu	37	3	123401086	123401086	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_053025.3	-1	reviewed	p.V1213M	0.692	220	0%	223	25.6%	6	0%	benign(0.051)	tolerated(0.09)	neutral(0.299)	NULL
KALRN	8997	genome.wustl.edu	37	3	124397111	124397111	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000354186	+1	known	p.Q2392*	1.000	234	0%	271	26.2%	0	-	benign(0.314)	deleterious(0.05)	neutral(0.444)	NULL
PLXNA1	5361	genome.wustl.edu	37	3	126722311	126722311	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032242.3	+1	validated	p.Q483*	1.000	53	0%	55	12.7%	9	0%	-	-	-	superfamily_Sema domain
C3orf25	90288	genome.wustl.edu	37	3	129127656	129127656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000326085	-1	known	p.R361C	0.241	136	0%	138	10.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACAD11	84129	genome.wustl.edu	37	3	132345594	132345594	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032169.4	-1	validated	p.Q380*	1.000	487	0.2%	547	37.8%	3	33.3%	-	-	-	superfamily_Acyl-CoA dehydrogenase NM domain-like
HLTF	6596	genome.wustl.edu	37	3	148781310	148781310	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003071.3	-1	reviewed	p.D356	0.910	274	0%	357	15.4%	7	14.2%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GPR149	344758	genome.wustl.edu	37	3	154146619	154146619	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001038705.1	-1	provisional	p.R262	0.000	19	0%	20	35%	0	-	-	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G	rs121913279	byCluster	TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006218.2	+1	reviewed	p.H1047R	1.000	209	0%	311	38.6%	5	60%	possibly_damaging(0.926)	deleterious(0.03)	deleterious(0.739)	HMMSmart_PI3Kc,superfamily_Kinase_like
ECE2	9718	genome.wustl.edu	37	3	184005670	184005670	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014693.3	+1	validated	p.A555T	0.997	150	0%	170	15.9%	0	-	benign(0.003)	tolerated(1)	-	"HMMPfam_Peptidase_M13_N,superfamily_Metalloproteases (""zincins"") catalytic domain"
DGKG	1608	genome.wustl.edu	37	3	186038214	186038214	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001346.2	-1	reviewed	p.E12G	0.995	409	0%	454	14.3%	0	-	possibly_damaging(0.811)	tolerated(0.51)	neutral(0.315)	superfamily_EF-hand
MFI2	4241	genome.wustl.edu	37	3	196735691	196735691	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005929.4	-1	reviewed	p.R557	0.049	58	0%	70	42.9%	3	33.3%	-	-	-	HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_2,superfamily_Periplasmic binding protein-like II
HGFAC	3083	genome.wustl.edu	37	4	3444804	3444804	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001528.2	+1	reviewed	p.R109K	0.852	13	0%	14	28.6%	0	-	benign(0)	tolerated(0.69)	neutral(0.002)	HMMPfam_fn2,HMMSmart_FN2,PatternScan_FN2_1,superfamily_Kringle-like
STK32B	55351	genome.wustl.edu	37	4	5448438	5448438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018401.1	+1	provisional	p.G201R	0.986	74	0%	88	15.9%	9	22.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
MAN2B2	23324	genome.wustl.edu	37	4	6594921	6594921	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000505907	+1	known	p.A233V	0.004	109	0%	138	19.6%	25	16%	-	-	-	HMMPfam_Glyco_hydro_38,superfamily_Glycoside hydrolase/deacetylase
ACOX3	8310	genome.wustl.edu	37	4	8398737	8398737	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003501.2	-1	validated	p.R328H	0.997	88	0%	103	24.3%	9	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acyl-CoA_dh_1,superfamily_Acyl-CoA dehydrogenase C-terminal domain-like
LGI2	55203	genome.wustl.edu	37	4	25005432	25005432	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018176.3	-1	validated	p.R427*	0.163	78	0%	106	26.4%	1	100%	-	-	-	HMMPfam_EPTP
TECRL	253017	genome.wustl.edu	37	4	65165701	65165701	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001010874.4	-1	validated	p.I255M	0.991	413	0%	379	47.8%	0	-	possibly_damaging(0.46)	tolerated(0.16)	neutral(0.210)	NULL
AMBN	258	genome.wustl.edu	37	4	71471925	71471925	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_016519.4	+1	reviewed	p.A274	0.997	108	0%	118	12.7%	0	-	-	-	-	HMMPfam_Amelin,HMMSmart_SM00817
HSD17B11	51170	genome.wustl.edu	37	4	88258504	88258504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_016245.3	-1	validated	p.R276H	1.000	325	0%	389	22.1%	13	46.1%	possibly_damaging(0.722)	deleterious(0.01)	deleterious(0.667)	NULL
DSPP	1834	genome.wustl.edu	37	4	88535707	88535707	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014208.3	+1	reviewed	p.S631	0.982	551	0.2%	542	16.8%	0	-	-	-	-	NULL
MTTP	4547	genome.wustl.edu	37	4	100534204	100534204	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000253.2	+1	reviewed	p.N708	0.039	380	0%	490	25.1%	0	-	-	-	-	NULL
TACR3	6870	genome.wustl.edu	37	4	104640369	104640369	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001059.1	-1	reviewed	p.A155V	1.000	102	0%	88	18.2%	0	-	benign(0.046)	tolerated(0.29)	neutral(0.032)	HMMPfam_7tm_1,superfamily_SSF81321
FAT4	79633	genome.wustl.edu	37	4	126238739	126238739	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_024582.4	+1	validated	p.N391	1.000	33	0%	24	20.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
FREM3	166752	genome.wustl.edu	37	4	144619428	144619428	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000329798	-1	known	p.Q801*	1.000	281	0%	342	19%	0	-	-	-	-	NULL
WDR17	116966	genome.wustl.edu	37	4	177069470	177069470	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_170710.4	+1	reviewed	p.H651	0.994	160	0%	246	23.6%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
FAT1	2195	genome.wustl.edu	37	4	187539651	187539651	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005245.3	-1	reviewed	p.E2697*	0.997	148	0%	182	47.3%	2	0%	-	-	-	HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases
LOC100128063	100128063	genome.wustl.edu	37	5	1052736	1052740	+	RNA	DEL	GAGCA	GAGCA	-	rs68188619	byCluster;by1000genomes	TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	GAGCA	GAGCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	XR_079180.1	+1	model	NULL	0.000:0.000:0.000:0.001:0.000	-	-	-	-	-	-	-	-	-	-
SLC12A7	10723	genome.wustl.edu	37	5	1081739	1081739	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006598.2	-1	validated	p.A417V	0.937	47	0%	66	15.2%	17	23.5%	benign(0.003)	tolerated(0.2)	neutral(0.049)	HMMPfam_AA_permease
CDH10	1008	genome.wustl.edu	37	5	24535232	24535232	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006727.2	-1	reviewed	p.R268L	0.988	321	0%	321	39.6%	0	-	probably_damaging(0.985)	deleterious(0.04)	deleterious(0.781)	superfamily_Cadherin
C6	729	genome.wustl.edu	37	5	41176696	41176696	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000065.2	-1	reviewed	p.N350T	1.000	288	0.3%	384	44.8%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_MACPF,HMMSmart_MACPF
ERCC8	1161	genome.wustl.edu	37	5	60240783	60240783	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000082.3	-1	reviewed	p.L18P	0.764	142	0%	132	12.1%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
IPO11	51194	genome.wustl.edu	37	5	61923044	61923044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001134779.1	+1	validated	p.A983T	1.000	255	0%	280	22.1%	14	21.4%	benign(0.015)	tolerated(0.42)	neutral(0.015)	NULL
CWC27	10283	genome.wustl.edu	37	5	64081367	64081367	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005869.2	+1	validated	p.D152	0.588	339	0%	385	11.4%	7	28.5%	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
PIK3R1	5295	genome.wustl.edu	37	5	67569842	67569845	+	Splice_Site	DEL	GTGA	GTGA	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	GTGA	GTGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_181523.1	+1	reviewed	e3+1	1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	-
CMYA5	202333	genome.wustl.edu	37	5	79031308	79031308	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_153610.3	+1	validated	p.E2240D	0.033	76	0%	112	17%	0	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	NULL
GPR98	84059	genome.wustl.edu	37	5	89923207	89923207	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032119.3	+1	reviewed	p.V284	1.000	170	0%	248	15.7%	0	-	-	-	-	NULL
NR2F1	7025	genome.wustl.edu	37	5	92923673	92923673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005654.4	+1	provisional	p.A172T	1.000	42	0%	40	22.5%	2	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	superfamily_Str_ncl_receptor,HMMPfam_zf-C4_C,superfamily_SSF57716
ERAP2	64167	genome.wustl.edu	37	5	96237332	96237332	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001130140.1	+1	validated	p.R565	0.999	126	0%	147	27.9%	23	8.6%	-	-	-	NULL
APC	324	genome.wustl.edu	37	5	112173857	112173857	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000038.4	+1	reviewed	p.R856G	0.919	137	0%	148	12.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
FBN2	2201	genome.wustl.edu	37	5	127670411	127670411	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001999.3	-1	reviewed	p.D1367Y	1.000	212	0%	239	13.4%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00179,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
ADAMTS19	171019	genome.wustl.edu	37	5	128862117	128862117	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_133638.3	+1	reviewed	p.A346T	1.000	220	0%	300	15%	0	-	benign(0.022)	tolerated(0.2)	neutral(0.050)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
PHF15	23338	genome.wustl.edu	37	5	133914805	133914805	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015288.4	+1	provisional	p.R724M	0.380	60	0%	51	25.5%	6	0%	possibly_damaging(0.923)	tolerated(0.25)	neutral(0.409)	NULL
KIF20A	10112	genome.wustl.edu	37	5	137521312	137521312	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005733.2	+1	validated	p.L680	0.998	71	0%	112	20.5%	15	26.6%	-	-	-	NULL
PCDHA8	56140	genome.wustl.edu	37	5	140222569	140222569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018911.2	+1	reviewed	p.V555M	0.977	31	0%	31	19.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHGB4	8641	genome.wustl.edu	37	5	140767466	140767466	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003736.2	+1	reviewed	p.A5	0.001	127	0%	125	20.8%	0	-	-	-	-	NULL
ARAP3	64411	genome.wustl.edu	37	5	141039479	141039479	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_022481.5	-1	reviewed	p.A1045V	1.000	47	0%	44	13.6%	8	25%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
TCOF1	6949	genome.wustl.edu	37	5	149756155	149756155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001135243.1	+1	reviewed	p.S771N	0.054	122	0%	168	15.5%	11	18.1%	possibly_damaging(0.873)	tolerated(0.23)	neutral(0.381)	HMMPfam_Treacle
NDST1	3340	genome.wustl.edu	37	5	149901260	149901260	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001543.4	+1	validated	p.D148	0.879	60	0%	81	29.6%	6	0%	-	-	-	NULL
C5orf4	10826	genome.wustl.edu	37	5	154200976	154200976	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032385.3	-1	validated	p.M230T	1.000	341	0%	391	29.9%	6	33.3%	benign(0)	deleterious(0.04)	neutral(0.349)	HMMPfam_FA_hydroxylase
C5orf52	100190949	genome.wustl.edu	37	5	157106887	157106887	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001145132.1	+1	validated	p.H120	0.535	144	0%	148	15.5%	0	-	-	-	-	NULL
FBXW11	23291	genome.wustl.edu	37	5	171337724	171337724	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_012300.2	-1	reviewed	p.L75	1.000	265	0%	268	22.4%	6	0%	-	-	-	NULL
NSD1	64324	genome.wustl.edu	37	5	176700780	176700780	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_022455.4	+1	reviewed	p.I1873V	1.000	233	0%	273	45.4%	6	33.3%	probably_damaging(0.961)	deleterious(0.01)	deleterious(0.810)	superfamily_Tudor/PWWP/MBT,superfamily_SET domain
N4BP3	23138	genome.wustl.edu	37	5	177546703	177546703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015111.1	+1	validated	p.R40H	1.000	27	0%	26	15.4%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
GRM6	2916	genome.wustl.edu	37	5	178418473	178418473	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000843.3	-1	reviewed	p.T270M	0.997	227	0%	180	30.6%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_ANF_receptor,superfamily_SSF53822
C5orf45	51149	genome.wustl.edu	37	5	179275033	179275033	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_016175.3	-1	validated	p.R54C	0.999	238	0%	292	29.8%	7	0%	possibly_damaging(0.479)	tolerated(0.1)	neutral(0.445)	NULL
FARS2	10667	genome.wustl.edu	37	6	5613464	5613464	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006567.3	+1	reviewed	p.Y376	0.875	528	0%	567	22.6%	13	15.3%	-	-	-	HMMPfam_FDX-ACB,superfamily_Fdx_AntiC_bd
KDM1B	221656	genome.wustl.edu	37	6	18197354	18197354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_153042.3	+1	validated	p.V214I	1.000	280	0%	334	18.3%	3	66.6%	benign(0.065)	tolerated(0.91)	neutral(0.004)	NULL
PPP1R10	5514	genome.wustl.edu	37	6	30569384	30569384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002714.2	-1	reviewed	p.R922H	1.000	106	0%	110	20%	64	31.2%	unknown(0)	deleterious(0.01)	-	HMMPfam_zf-CCCH,HMMSmart_SM00356
TNXB	7148	genome.wustl.edu	37	6	32065664	32065664	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_019105.6	-1	reviewed	p.R104	0.481	61	0%	71	32.4%	0	-	-	-	-	NULL
CLPSL1	340204	genome.wustl.edu	37	6	35748915	35748915	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001010886.3	+1	predicted	p.L10	0.080	336	0%	438	12.8%	2	0%	-	-	-	NULL
BRPF3	27154	genome.wustl.edu	37	6	36168931	36168931	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015695.2	+1	validated	p.A278T	1.000	31	0%	55	14.5%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
FGD2	221472	genome.wustl.edu	37	6	36989380	36989380	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_173558.3	+1	validated	p.E442D	0.970	103	0%	83	12%	0	-	benign(0)	tolerated(0.47)	neutral(0.011)	superfamily_PH domain-like
DNAH8	1769	genome.wustl.edu	37	6	38794124	38794124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001371.2	+1	validated	p.R1130H	1.000	171	0%	226	15.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TSPO2	222642	genome.wustl.edu	37	6	41011397	41011397	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001010873.2	+1	validated	p.T92I	0.001	122	0%	180	30%	0	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	HMMPfam_TspO_MBR
FOXP4	116113	genome.wustl.edu	37	6	41553195	41553202	+	Frame_Shift_Del	DEL	GGAGCAGC	GGAGCAGC	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	GGAGCAGC	GGAGCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001012426.1	+1	reviewed	p.Q150fs	0.995:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PEX6	5190	genome.wustl.edu	37	6	42942666	42942666	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000287.3	-1	reviewed	p.Y331	1.000	312	0%	336	16.1%	12	16.6%	-	-	-	NULL
CUL9	23113	genome.wustl.edu	37	6	43153889	43153889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015089.2	+1	validated	p.S316N	1.000	150	0%	116	13.8%	4	50%	unknown(0)	deleterious(0.01)	-	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83848473	83848473	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015018.2	+1	validated	p.E1571G	1.000	170	0%	230	17.4%	2	0%	possibly_damaging(0.904)	tolerated(0.13)	deleterious(0.611)	NULL
FBXL4	26235	genome.wustl.edu	37	6	99374515	99374515	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_012160.3	-1	reviewed	p.T117M	1.000	138	0%	146	12.3%	6	50%	probably_damaging(0.998)	tolerated(0.08)	deleterious(0.774)	NULL
ENPP3	5169	genome.wustl.edu	37	6	132007037	132007037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005021.3	+1	reviewed	p.R425K	0.457	210	0%	212	10.4%	2	50%	benign(0.001)	tolerated(1)	-	HMMPfam_Phosphodiest,superfamily_Alkaline_phosphatase_core
UTRN	7402	genome.wustl.edu	37	6	145093073	145093073	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_007124.2	+1	reviewed	p.H2842	1.000	178	0%	226	33.6%	10	40%	-	-	-	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_SSF47473
IGF2R	3482	genome.wustl.edu	37	6	160484659	160484659	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000876.2	+1	reviewed	p.A1295T	1.000	152	0%	181	17.1%	4	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_CIMR,superfamily_Mannose 6-phosphate receptor domain
BRAT1	221927	genome.wustl.edu	37	7	2581437	2581437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152743.2	-1	provisional	p.T350M	0.000	12	0%	20	35%	41	14.6%	possibly_damaging(0.952)	tolerated(0.21)	neutral(0.440)	superfamily_ARM repeat
PHF14	9678	genome.wustl.edu	37	7	11022445	11022445	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000303905	+1	known	p.R187*	0.994	312	0%	409	24.7%	5	0%	-	-	-	NULL
CDCA7L	55536	genome.wustl.edu	37	7	21945239	21945239	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018719.4	-1	validated	p.R311Q	0.975	150	0%	169	18.9%	6	0%	benign(0.004)	tolerated(0.73)	neutral(0.002)	NULL
GCK	2645	genome.wustl.edu	37	7	44198690	44198690	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_033507.1	-1	reviewed	p.A10	0.006	140	0%	107	24.3%	0	-	-	-	-	NULL
TNS3	64759	genome.wustl.edu	37	7	47343149	47343149	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_022748.10	-1	validated	p.S952fs	0.999	-	-	-	-	-	-	-	-	-	NULL
ABCA13	154664	genome.wustl.edu	37	7	48318902	48318902	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152701.3	+1	reviewed	p.G2704D	0.000	100	0%	132	21.2%	0	-	benign(0)	-	-	NULL
GRB10	2887	genome.wustl.edu	37	7	50742350	50742350	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005311.4	-1	reviewed	p.D49N	1.000	103	0%	119	33.6%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TYW1	55253	genome.wustl.edu	37	7	66582544	66582544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018264.2	+1	validated	p.R546H	1.000	332	0%	444	15.3%	6	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Radical_SAM,superfamily_Radical SAM enzymes
NSUN5P2	260294	genome.wustl.edu	37	7	72419542	72419542	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000330999	-1	known	p.A161V	0.990	79	0%	87	12.6%	9	0%	-	-	-	HMMPfam_Nol1_Nop2_Fmu,superfamily_S-adenosyl-L-methionine-dependent methyltransferases
NSUN5	55695	genome.wustl.edu	37	7	72718852	72718852	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_148956.2	-1	reviewed	p.C216Y	1.000	90	0%	115	22.6%	20	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Nol1_Nop2_Fmu,superfamily_SSF53335
FZD9	8326	genome.wustl.edu	37	7	72849130	72849130	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003508.2	+1	reviewed	p.R265C	1.000	104	0%	114	15.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Frizzled
GTF2IRD2	84163	genome.wustl.edu	37	7	74211470	74211470	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_173537.2	-1	validated	p.W794L	0.960	258	0%	338	17.2%	7	14.2%	probably_damaging(0.999)	tolerated(0.33)	deleterious(0.514)	NULL
SEMA3D	223117	genome.wustl.edu	37	7	84727164	84727164	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152754.2	-1	validated	p.I90N	1.000	122	0%	194	17.5%	0	-	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
MBLAC1	255374	genome.wustl.edu	37	7	99725808	99725808	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_203397.1	+1	validated	p.A264T	0.000	28	0%	39	30.8%	4	50%	benign(0)	-	-	NULL
MUC17	140453	genome.wustl.edu	37	7	100677857	100677857	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001040105.1	+1	provisional	p.V1054M	0.000	378	0%	229	13.1%	0	-	unknown(0)	-	-	NULL
COG5	10466	genome.wustl.edu	37	7	106924134	106924134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006348.3	-1	validated	p.A484P	1.000	429	0%	538	11.5%	6	33.3%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
LAMB1	3912	genome.wustl.edu	37	7	107642064	107642064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002291.2	-1	reviewed	p.S51L	0.255	16	0%	17	35.3%	6	16.6%	benign(0.02)	tolerated(0.3)	neutral(0.030)	HMMPfam_Laminin_N,HMMSmart_SM00136
AASS	10157	genome.wustl.edu	37	7	121773617	121773617	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005763.3	-1	reviewed	p.Y55C	1.000	269	0%	275	24.7%	0	-	benign(0.422)	tolerated(0.13)	neutral(0.390)	HMMPfam_AlaDh_PNT_N,superfamily_Formate/glycerate dehydrogenase catalytic domain-like
GRM8	2918	genome.wustl.edu	37	7	126883175	126883175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000845.2	-1	reviewed	p.M28I	1.000	93	0%	104	18.3%	0	-	benign(0.003)	tolerated(0.46)	neutral(0.012)	NULL
JHDM1D	80853	genome.wustl.edu	37	7	139833439	139833439	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_030647.1	-1	validated	p.W100R	1.000	420	0%	566	15.9%	3	0%	probably_damaging(0.996)	deleterious(0.05)	deleterious(0.807)	superfamily_FYVE/PHD zinc finger
DENND2A	27147	genome.wustl.edu	37	7	140285482	140285482	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015689.3	-1	validated	p.E384D	1.000	231	0%	358	23.2%	7	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
OR6B1	135946	genome.wustl.edu	37	7	143701744	143701744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001005281.1	+1	provisional	p.G219R	0.021	236	0%	329	27.1%	0	-	benign(0.053)	tolerated(0.07)	neutral(0.323)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
GIMAP8	155038	genome.wustl.edu	37	7	150164090	150164090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_175571.2	+1	reviewed	p.A102T	0.000	139	0%	197	30.5%	1	0%	benign(0.291)	tolerated(0.22)	neutral(0.132)	HMMPfam_AIG1,superfamily_SSF52540
ASB10	136371	genome.wustl.edu	37	7	150883923	150883923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001142459.1	-1	reviewed	p.R144C	0.999	31	0%	43	18.6%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	superfamily_Ankyrin repeat
HTR5A	3361	genome.wustl.edu	37	7	154862970	154862970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_024012.2	+1	reviewed	p.D121N	1.000	25	0%	32	21.9%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
C8orf74	203076	genome.wustl.edu	37	8	10557947	10557947	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001040032.1	+1	validated	p.A284V	0.000	161	0%	156	31.4%	0	-	unknown(0)	tolerated(0.11)	-	NULL
RHOBTB2	23221	genome.wustl.edu	37	8	22863610	22863610	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015178.2	+1	validated	p.R145H	1.000	193	0%	215	23.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_RHO,HMMPfam_Ras,superfamily_SSF52540
ADRA1A	148	genome.wustl.edu	37	8	26722219	26722219	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_033303.3	-1	reviewed	p.G90C	1.000	89	0%	90	15.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
ADAM9	8754	genome.wustl.edu	37	8	38948816	38948816	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003816.2	+1	reviewed	p.P750L	0.266	243	0%	352	10.5%	70	2.8%	benign(0.03)	deleterious(0)	neutral(0.446)	NULL
CHD7	55636	genome.wustl.edu	37	8	61729019	61729019	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_017780.2	+1	reviewed	p.R858*	1.000	343	0%	421	22.6%	1	0%	-	-	-	HMMPfam_Chromo,HMMSmart_SM00298,superfamily_Chromo domain-like
PRDM14	63978	genome.wustl.edu	37	8	70964324	70964324	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_024504.2	-1	validated	p.H568	0.236	111	0%	174	22.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PRDM14	63978	genome.wustl.edu	37	8	70981474	70981474	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_024504.2	-1	validated	p.G208R	0.997	59	0%	92	23.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C8orf84	157869	genome.wustl.edu	37	8	73993380	73993380	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_153225.3	-1	validated	p.R95C	0.981	25	0%	28	32.1%	153	20.9%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	HMMSmart_TSP1,superfamily_TSP1
GEM	2669	genome.wustl.edu	37	8	95272707	95272707	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005261.3	-1	reviewed	p.R9C	1.000	95	0%	136	16.9%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FBXO43	286151	genome.wustl.edu	37	8	101153861	101153861	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001029860.2	-1	validated	p.V207	0.046	39	0%	56	17.9%	0	-	-	-	-	NULL
CSMD3	114788	genome.wustl.edu	37	8	113241081	113241081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_198123.1	-1	validated	p.P3623L	1.000	216	0%	290	11.7%	0	-	possibly_damaging(0.907)	tolerated(0.39)	neutral(0.377)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113353748	113353748	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_198123.1	-1	validated	p.D2204Y	1.000	426	0%	546	13.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113841955	113841955	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_198123.1	-1	validated	p.D607N	1.000	297	0%	342	12%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
COL14A1	7373	genome.wustl.edu	37	8	121256207	121256207	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_021110.1	+1	validated	p.T813	0.059	156	0%	201	23.4%	3	0%	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MTSS1	9788	genome.wustl.edu	37	8	125565703	125565703	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014751.4	-1	validated	p.R600C	1.000	129	0%	146	24.7%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
HHLA1	10086	genome.wustl.edu	37	8	133078137	133078137	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001145095.1	-1	provisional	p.S516	0.074	407	0.2%	517	41.6%	0	-	-	-	-	NULL
PLEC	5339	genome.wustl.edu	37	8	144991559	144991559	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_201380.2	-1	reviewed	p.V4281M	1.000	38	0%	38	18.4%	85	25.8%	probably_damaging(0.999)	-	-	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Plakin repeat
HSF1	3297	genome.wustl.edu	37	8	145535491	145535491	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005526.2	+1	reviewed	p.M277V	0.064	20	0%	20	30%	50	14%	benign(0)	tolerated(0.68)	neutral(0.002)	HMMPfam_Vert_HS_TF
ZNF34	80778	genome.wustl.edu	37	8	145999522	145999522	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_030580.3	-1	validated	p.R271L	0.007	129	0%	130	26.2%	0	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PLAA	9373	genome.wustl.edu	37	9	26905722	26905722	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001031689.2	-1	validated	p.C725	0.997	338	0%	417	16.3%	22	22.7%	-	-	-	HMMPfam_PUL,superfamily_ARM-type_fold
PLAA	9373	genome.wustl.edu	37	9	26925944	26925944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001031689.2	-1	validated	p.A250T	1.000	198	0%	281	19.6%	7	28.5%	unknown(0)	deleterious(0.01)	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
TOPORS	10210	genome.wustl.edu	37	9	32541988	32541988	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005802.3	-1	reviewed	p.D845	0.971	673	0%	790	15.1%	12	8.3%	-	-	-	NULL
TAF1L	138474	genome.wustl.edu	37	9	32630589	32630589	+	Silent	SNP	A	A	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_153809.2	-1	provisional	p.S1663	1.000	404	0%	328	23.8%	0	-	-	-	-	NULL
TLN1	7094	genome.wustl.edu	37	9	35722175	35722175	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006289.3	-1	reviewed	p.R297C	0.997	171	0%	280	24.6%	14	7.1%	benign(0.011)	deleterious(0.03)	neutral(0.365)	PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
C9orf135	138255	genome.wustl.edu	37	9	72435901	72435901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001010940.1	+1	validated	p.R36C	1.000	37	0%	48	54.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
FGD3	89846	genome.wustl.edu	37	9	95772579	95772579	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001083536.1	+1	validated	p.V297M	0.999	39	0%	45	20%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
RNF20	56254	genome.wustl.edu	37	9	104314839	104314839	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_019592.5	+1	reviewed	p.R569*	1.000	625	0%	551	13.4%	11	9%	-	-	-	NULL
ABCA1	19	genome.wustl.edu	37	9	107547790	107547790	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005502.2	-1	reviewed	p.Y2178fs	1.000	-	-	-	-	-	-	-	-	-	NULL
PAPPA	5069	genome.wustl.edu	37	9	119106824	119106824	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002581.3	+1	reviewed	p.C1205Y	1.000	126	0%	176	29.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	superfamily_SSF55486
ZBTB6	10773	genome.wustl.edu	37	9	125673304	125673304	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006626.4	-1	provisional	p.G350C	1.000	106	0%	121	21.5%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_C2H2 and C2HC zinc fingers
DOLPP1	57171	genome.wustl.edu	37	9	131847867	131847867	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020438.4	+1	validated	p.A145T	1.000	90	1.1%	99	30.3%	16	18.7%	benign(0)	tolerated(0.89)	-	HMMPfam_PAP2,HMMSmart_acidPPc,superfamily_AcPase_VanPerase
USP20	10868	genome.wustl.edu	37	9	132625468	132625468	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001008563.3	+1	validated	p.P167	0.636	79	0%	139	28.1%	1	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
SDCCAG3	10807	genome.wustl.edu	37	9	139301763	139301763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001039707.1	-1	validated	p.P218L	0.376	37	0%	45	33.3%	15	20%	possibly_damaging(0.772)	tolerated(0.07)	deleterious(0.606)	NULL
SEC16A	9919	genome.wustl.edu	37	9	139368521	139368521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014866.1	-1	validated	p.A1183T	0.000	85	0%	91	16.5%	22	31.8%	possibly_damaging(0.922)	tolerated(0.57)	neutral(0.378)	NULL
ANKRD30A	91074	genome.wustl.edu	37	10	37430800	37430800	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_052997.2	+1	validated	p.P269	0.009	214	0%	239	15.9%	0	-	-	-	-	NULL
RHOBTB1	9886	genome.wustl.edu	37	10	62648216	62648216	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014836.4	-1	reviewed	p.A404T	0.350	52	0%	91	31.9%	0	-	benign(0)	tolerated(0.42)	neutral(0.014)	HMMSmart_BTB,superfamily_BTB/POZ_fold
HK1	3098	genome.wustl.edu	37	10	71146123	71146123	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_033497.2	+1	reviewed	p.C632	0.740	418	0.5%	507	14.2%	29	13.7%	-	-	-	HMMPfam_Hexokinase_1,superfamily_SSF53067
COL13A1	1305	genome.wustl.edu	37	10	71697454	71697454	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001130103.1	+1	reviewed	p.G610C	1.000	96	0%	56	17.9%	2	0%	unknown(0)	-	-	HMMPfam_Collagen
KCNMA1	3778	genome.wustl.edu	37	10	78761170	78761170	+	Missense_Mutation	SNP	C	C	T	rs145788902	by1000genomes	TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000406533	-1	known	p.R754H	1.000	177	0%	131	13%	0	-	possibly_damaging(0.771)	tolerated(0.37)	neutral(0.305)	NULL
KLLN	100144748	genome.wustl.edu	37	10	89621895	89621895	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001126049.1	-1	validated	p.T117I	0.000	28	0%	25	40%	0	-	possibly_damaging(0.45)	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000371953	+1	known	p.R233*	0.984	281	0%	314	23.2%	13	7.6%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
PTEN	5728	genome.wustl.edu	37	10	89720672	89720672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000371953	+1	known	p.V275L	1.000	175	0%	250	24%	1	0%	benign(0)	tolerated(0.59)	neutral(0.004)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
ACTA2	59	genome.wustl.edu	37	10	90707053	90707053	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001141945.1	-1	reviewed	p.E74*	1.000	671	0%	760	17.1%	97	0%	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
SORCS1	114815	genome.wustl.edu	37	10	108389034	108389034	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001013031.1	-1	reviewed	p.G863D	1.000	137	0%	159	25.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PKD,HMMSmart_PKD,superfamily_PKD
VAX1	11023	genome.wustl.edu	37	10	118893529	118893529	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001112704.1	-1	reviewed	p.A332V	1.000	64	0%	78	17.9%	0	-	unknown(0)	tolerated(1)	-	NULL
BUB3	9184	genome.wustl.edu	37	10	124922194	124922194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004725.3	+1	reviewed	p.R274L	1.000	288	0%	384	16.7%	87	29.8%	benign(0.012)	tolerated(0.06)	neutral(0.323)	HMMSmart_SM00320,superfamily_WD40 repeat-like
CHST15	51363	genome.wustl.edu	37	10	125769686	125769686	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015892.2	-1	validated	p.A555	0.891	44	0%	50	20%	4	25%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
MKI67	4288	genome.wustl.edu	37	10	129905806	129905806	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002417.4	-1	reviewed	p.A1433V	0.000	750	0%	753	26.3%	7	0%	benign(0)	tolerated(0.38)	neutral(0.018)	HMMPfam_K167R
OLFML1	283298	genome.wustl.edu	37	11	7530999	7530999	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_198474.3	+1	validated	p.Q263	1.000	71	0%	82	15.9%	3	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
USH1C	10083	genome.wustl.edu	37	11	17517181	17517181	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_153676.3	-1	reviewed	p.R864*	0.889	148	0%	124	25%	0	-	-	-	-	NULL
EHF	26298	genome.wustl.edu	37	11	34668056	34668056	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_012153.4	+1	validated	p.W56*	1.000	93	0%	99	21.2%	26	3.8%	-	-	-	HMMPfam_SAM_PNT,HMMSmart_SM00251,superfamily_SAM/Pointed domain
CD44	960	genome.wustl.edu	37	11	35223242	35223242	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000610.3	+1	reviewed	p.A354V	0.011	253	0%	305	13.8%	46	15.2%	benign(0.15)	tolerated(0.08)	neutral(0.313)	NULL
MYBPC3	4607	genome.wustl.edu	37	11	47365113	47365113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000256.3	-1	reviewed	p.V385M	0.981	101	0%	121	20.7%	0	-	possibly_damaging(0.691)	deleterious(0.01)	deleterious(0.653)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
FNBP4	23360	genome.wustl.edu	37	11	47772788	47772788	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015308.2	-1	validated	p.Y231C	1.000	281	0%	314	23.9%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_WW,HMMSmart_SM00456,superfamily_WW domain
OR4C6	219432	genome.wustl.edu	37	11	55433528	55433528	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001004704.1	+1	provisional	p.M296V	0.578	213	0%	310	18.4%	0	-	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_Family A G protein-coupled receptor-like
B3GAT3	26229	genome.wustl.edu	37	11	62388015	62388015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_012200.2	-1	reviewed	p.P71T	0.998	45	0%	45	15.6%	30	13.3%	benign(0.062)	tolerated(0.31)	neutral(0.031)	NULL
KAT5	10524	genome.wustl.edu	37	11	65486078	65486078	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_182710.1	+1	reviewed	p.V428M	1.000	73	0%	76	18.4%	33	9%	possibly_damaging(0.86)	tolerated(0.18)	neutral(0.389)	HMMPfam_MOZ_SAS,superfamily_Acyl-CoA N-acyltransferases (Nat)
TMEM134	80194	genome.wustl.edu	37	11	67235039	67235039	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_025124.2	-1	validated	p.R88C	0.250	42	0%	67	16.4%	53	22.6%	probably_damaging(0.997)	tolerated(0.2)	deleterious(0.515)	HMMPfam_DUF872
RELT	84957	genome.wustl.edu	37	11	73101856	73101856	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032871.3	+1	reviewed	p.A59	0.000	44	0%	48	14.6%	3	33.3%	-	-	-	HMMSmart_TNFR
UVRAG	7405	genome.wustl.edu	37	11	75562961	75562961	+	Silent	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003369.3	+1	reviewed	p.R51	1.000	295	0%	416	11.5%	3	0%	-	-	-	HMMSmart_C2,superfamily_C2_CaLB
FUT4	2526	genome.wustl.edu	37	11	94278550	94278550	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002033.3	+1	reviewed	p.Q417H	1.000	27	0%	28	14.3%	2	50%	probably_damaging(0.992)	tolerated(0.54)	neutral(0.455)	HMMPfam_Glyco_transf_10
ARHGAP42	143872	genome.wustl.edu	37	11	100806958	100806958	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152432.2	+1	provisional	p.R243*	0.993	153	0%	233	20.2%	0	-	-	-	-	NULL
PDGFD	80310	genome.wustl.edu	37	11	104034555	104034555	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_025208.4	-1	reviewed	p.R34H	1.000	118	0%	171	23.4%	6	0%	possibly_damaging(0.859)	deleterious(0)	deleterious(0.776)	PatternScan_TONB_DEPENDENT_REC_1
C11orf34	349633	genome.wustl.edu	37	11	112126171	112126171	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001145024.1	-1	provisional	p.T109K	0.000	315	0%	373	82%	0	-	possibly_damaging(0.484)	tolerated(0.65)	neutral(0.164)	NULL
FAM55D	54827	genome.wustl.edu	37	11	114453474	114453474	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001077639.1	-1	validated	p.E122D	0.233	649	0%	808	14.5%	0	-	benign(0.002)	tolerated(0.35)	neutral(0.021)	superfamily_E set domains
APOA5	116519	genome.wustl.edu	37	11	116662400	116662400	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_052968.4	-1	reviewed	p.T21	0.003	126	0%	149	26.8%	0	-	-	-	-	superfamily_SSF47162
ENSG00000244817	0	genome.wustl.edu	37	11	118184401	118184401	+	RNA	SNP	T	T	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000501549	-1	known	NULL	0.000	63	0%	88	12.5%	0	-	-	-	-	-
ARCN1	372	genome.wustl.edu	37	11	118463466	118463466	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001655.4	+1	reviewed	p.L343V	0.997	221	0%	282	11.3%	19	36.8%	benign(0)	tolerated(0.83)	neutral(0.001)	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
TREH	11181	genome.wustl.edu	37	11	118531287	118531287	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000264029	-1	known	p.Q355*	1.000	152	0%	186	29.6%	0	-	-	-	-	HMMPfam_Trehalase,superfamily_Six-hairpin glycosidases
TECTA	7007	genome.wustl.edu	37	11	121035999	121035999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005422.2	+1	reviewed	p.P1764S	1.000	702	0%	685	14.5%	0	-	probably_damaging(0.978)	tolerated(0.22)	neutral(0.462)	NULL
ROBO3	64221	genome.wustl.edu	37	11	124747921	124747921	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_022370.3	+1	reviewed	p.A1025	0.197	37	0%	46	26.1%	0	-	-	-	-	NULL
STT3A	3703	genome.wustl.edu	37	11	125478146	125478146	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152713.3	+1	validated	p.F308S	1.000	290	0.3%	437	25.4%	75	20%	benign(0)	tolerated(0.44)	neutral(0.013)	HMMPfam_STT3
KCNJ5	3762	genome.wustl.edu	37	11	128781826	128781826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000890.3	+1	reviewed	p.R220W	1.000	154	0%	144	16.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IRK,superfamily_Ig_E-set
TMEM45B	120224	genome.wustl.edu	37	11	129722495	129722495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_138788.3	+1	provisional	p.H40Y	0.001	202	0%	251	15.5%	6	50%	benign(0.017)	tolerated(0.36)	neutral(0.021)	NULL
WNK1	65125	genome.wustl.edu	37	12	991165	991165	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018979.3	+1	reviewed	p.R1100W	1.000	180	0%	240	21.7%	5	0%	unknown(0)	deleterious(0)	-	NULL
CD4	920	genome.wustl.edu	37	12	6927663	6927663	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000616.3	+1	validated	p.F411	0.001	98	0%	124	25.8%	4	0%	-	-	-	NULL
CLEC2D	29121	genome.wustl.edu	37	12	9840596	9840596	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001004419.2	+1	reviewed	p.D91N	0.371	212	0%	234	16.7%	4	0%	benign(0.123)	tolerated(0.32)	neutral(0.034)	HMMSmart_CLECT,superfamily_C-type_lectin_fold
WBP11	51729	genome.wustl.edu	37	12	14947656	14947656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_016312.2	-1	reviewed	p.A179V	1.000	45	0%	43	39.5%	41	24.3%	probably_damaging(0.978)	deleterious(0.04)	deleterious(0.769)	NULL
ASUN	55726	genome.wustl.edu	37	12	27066542	27066542	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018164.2	-1	validated	p.Q551	0.944	684	0%	876	12.3%	15	0%	-	-	-	HMMPfam_DUF2151
LOC100288986	100288986	genome.wustl.edu	37	12	47628858	47628858	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	XM_002343197.1	-1	model	p.Q212*	0.005	84	0%	77	24.7%	7	57.1%	-	-	-	NULL
AQP6	363	genome.wustl.edu	37	12	50367155	50367155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001652.3	+1	reviewed	p.A67T	0.997	46	0%	41	24.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_MIP,superfamily_MIP
C12orf44	60673	genome.wustl.edu	37	12	52467573	52467573	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001098673.1	+1	validated	p.I47V	1.000	221	0%	239	31%	63	22.2%	benign(0.004)	tolerated(0.67)	neutral(0.003)	HMMPfam_DUF1649
KRT5	3852	genome.wustl.edu	37	12	52910981	52910981	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000424.3	-1	reviewed	p.G376	0.000	201	0%	215	13%	107	0.9%	-	-	-	HMMPfam_Filament
GLI1	2735	genome.wustl.edu	37	12	57864806	57864806	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005269.2	+1	reviewed	p.Y761*	0.014	32	0%	39	48.7%	0	-	-	-	-	NULL
CDK17	5128	genome.wustl.edu	37	12	96680442	96680442	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002595.3	-1	reviewed	p.G406*	1.000	220	0%	258	14%	3	33.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
STAB2	55576	genome.wustl.edu	37	12	103988219	103988219	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_017564.9	+1	reviewed	p.R88C	1.000	222	0%	265	26.8%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
STAB2	55576	genome.wustl.edu	37	12	104086652	104086652	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_017564.9	+1	reviewed	p.I1120M	0.244	318	0%	344	24.1%	0	-	benign(0.235)	deleterious(0.02)	neutral(0.407)	HMMPfam_Fasciclin,HMMSmart_FAS1,superfamily_BIgH3_FAS1
CMKLR1	1240	genome.wustl.edu	37	12	108686010	108686010	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001142343.1	-1	validated	p.V244M	1.000	160	0%	181	42.5%	1	0%	benign(0.406)	deleterious(0.03)	deleterious(0.495)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TBX5	6910	genome.wustl.edu	37	12	114836499	114836499	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000192.3	-1	reviewed	p.A130V	1.000	69	0%	90	44.4%	0	-	possibly_damaging(0.921)	deleterious(0.04)	deleterious(0.720)	HMMPfam_T-box,HMMSmart_SM00425,superfamily_p53-like transcription factors
CAMKK2	10645	genome.wustl.edu	37	12	121712016	121712016	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006549.3	-1	reviewed	p.S105Y	1.000	16	0%	19	36.8%	8	0%	benign(0.305)	deleterious(0.01)	deleterious(0.501)	NULL
TMEM120B	144404	genome.wustl.edu	37	12	122213624	122213624	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001080825.2	+1	validated	p.P339L	0.004	64	0%	74	17.6%	1	0%	possibly_damaging(0.913)	deleterious(0)	deleterious(0.809)	NULL
RIMBP2	23504	genome.wustl.edu	37	12	130941156	130941156	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015347.4	-1	validated	p.H64	0.997	44	0%	33	30.3%	1	0%	-	-	-	NULL
SACS	26278	genome.wustl.edu	37	13	23908277	23908277	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014363.4	-1	reviewed	p.N3246	0.960	356	0%	483	15.1%	0	-	-	-	-	NULL
BRCA2	675	genome.wustl.edu	37	13	32913026	32913026	+	Missense_Mutation	SNP	C	C	T	rs80358684		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000059.3	+1	reviewed	p.R1512C	0.000	87	1.1%	134	53%	1	0%	benign(0)	tolerated(0.18)	neutral(0.056)	NULL
BRCA2	675	genome.wustl.edu	37	13	32914477	32914477	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000059.3	+1	reviewed	p.N1995	1.000	76	0%	85	23.5%	0	-	-	-	-	HMMPfam_BRCA2
NBEA	26960	genome.wustl.edu	37	13	35733686	35733686	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015678.4	+1	validated	p.N1126	0.989	241	0%	336	27.7%	0	-	-	-	-	superfamily_ARM repeat
RNF113B	140432	genome.wustl.edu	37	13	98829332	98829332	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_178861.4	-1	validated	p.G53	0.005	14	0%	18	38.9%	0	-	-	-	-	NULL
TMEM55B	90809	genome.wustl.edu	37	14	20927580	20927580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001100814.1	-1	validated	p.R196H	1.000	465	0%	600	19.8%	31	32.2%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Tmemb_55A
PRKD1	5587	genome.wustl.edu	37	14	30194848	30194850	+	In_Frame_Del	DEL	ATC	ATC	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	ATC	ATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002742.2	-1	validated	p.D99in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
NID2	22795	genome.wustl.edu	37	14	52520942	52520942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_007361.3	-1	validated	p.A289T	0.000	80	0%	84	20.2%	1	0%	benign(0)	tolerated(0.57)	neutral(0.006)	NULL
HSPA2	3306	genome.wustl.edu	37	14	65008064	65008064	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_021979.3	+1	validated	p.T166M	1.000	16	0%	27	33.3%	16	25%	possibly_damaging(0.91)	deleterious(0)	deleterious(0.807)	HMMPfam_HSP70,superfamily_SSF53067
GALNTL1	57452	genome.wustl.edu	37	14	69814781	69814781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000448469	+1	known	p.A534V	0.116	52	1.9%	52	19.2%	0	-	benign(0.013)	tolerated(0.39)	neutral(0.017)	NULL
CEP128	145508	genome.wustl.edu	37	14	81302669	81302669	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152446.3	-1	validated	p.R313C	0.993	479	0%	640	12.2%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
DYNC1H1	1778	genome.wustl.edu	37	14	102483836	102483836	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001376.4	+1	reviewed	p.S2724	0.865	203	0%	205	14.1%	13	15.3%	-	-	-	HMMSmart_AAA,HMMPfam_AAA_5,superfamily_SSF52540
CDC42BPB	9578	genome.wustl.edu	37	14	103470316	103470316	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006035.3	-1	reviewed	p.D132	1.000	48	0%	74	18.9%	18	16.6%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TMEM87A	25963	genome.wustl.edu	37	15	42556349	42556349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015497.3	-1	validated	p.S115Y	1.000	409	0.2%	581	11.4%	12	25%	probably_damaging(0.996)	tolerated(0.25)	deleterious(0.498)	NULL
USP8	9101	genome.wustl.edu	37	15	50751197	50751197	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001128610.1	+1	validated	p.R112S	1.000	270	0%	389	22.9%	2	50%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_DUF1873
DPP8	54878	genome.wustl.edu	37	15	65793045	65793045	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_197960.2	-1	reviewed	p.G165R	0.998	478	0%	571	13.7%	2	50%	probably_damaging(0.979)	deleterious(0)	deleterious(0.867)	superfamily_Dipeptidyl peptidase IV/CD26 N-terminal domain
STRA6	64220	genome.wustl.edu	37	15	74481532	74481532	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001142617.1	-1	reviewed	p.A338	0.032	51	0%	52	32.7%	41	14.6%	-	-	-	NULL
ACSBG1	23205	genome.wustl.edu	37	15	78486864	78486864	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015162.3	-1	reviewed	p.A146D	1.000	101	0%	135	15.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
DET1	55070	genome.wustl.edu	37	15	89073985	89073985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_017996.3	-1	validated	p.R329C	1.000	59	0%	93	20.4%	3	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Det1
DET1	55070	genome.wustl.edu	37	15	89074021	89074021	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_017996.3	-1	validated	p.R317W	1.000	77	0%	100	27%	5	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Det1
IGFALS	3483	genome.wustl.edu	37	16	1841079	1841079	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004970.2	-1	reviewed	p.T447M	0.712	4	0.000	7	0.571	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047
NMRAL1	57407	genome.wustl.edu	37	16	4519459	4519459	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020677.3	-1	provisional	p.Q16H	0.996	85	0%	116	33.6%	46	19.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NmrA,superfamily_NAD(P)-bd
PARN	5073	genome.wustl.edu	37	16	14676087	14676087	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002582.2	-1	reviewed	p.Y381	0.996	211	0%	393	16.3%	15	20%	-	-	-	HMMPfam_CAF1,superfamily_Ribonuclease H-like
BFAR	51283	genome.wustl.edu	37	16	14742253	14742253	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_016561.2	+1	validated	p.I91T	1.000	136	0%	165	24.2%	25	8%	benign(0.002)	tolerated(0.26)	neutral(0.034)	superfamily_RING/U-box
ABCC1	4363	genome.wustl.edu	37	16	16108454	16108454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004996.3	+1	reviewed	p.L153P	1.000	243	0%	309	19.1%	18	16.6%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
XYLT1	64131	genome.wustl.edu	37	16	17228564	17228564	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_022166.3	-1	reviewed	p.R598H	1.000	133	0%	141	14.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GGA2	23062	genome.wustl.edu	37	16	23505688	23505688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015044.4	-1	reviewed	p.A63V	1.000	176	0%	163	44.2%	13	23%	possibly_damaging(0.939)	deleterious(0)	deleterious(0.829)	HMMPfam_VHS,superfamily_ENTH_VHS,HMMSmart_VHS
SNX29P1	100652781	genome.wustl.edu	37	16	29370630	29370630	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000507381	+1	known	p.S25Y	1.000	650	0%	749	10.7%	0	-	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	HMMSmart_SM00593
ZNF688	146542	genome.wustl.edu	37	16	30581727	30581727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_145271.3	-1	validated	p.P114Q	0.001	39	0%	37	29.7%	16	12.5%	benign(0.071)	tolerated(0.6)	neutral(0.009)	NULL
ZNF646	9726	genome.wustl.edu	37	16	31091097	31091097	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014699.3	+1	validated	p.K1151M	0.419	105	0%	69	20.3%	6	16.6%	possibly_damaging(0.888)	deleterious(0.04)	deleterious(0.696)	NULL
ENSG00000198555	0	genome.wustl.edu	37	16	33784516	33784516	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000359871	+1	known	p.R461*	1.000	79	0%	75	22.7%	2	0%	-	-	-	HMMPfam_SNF
GPT2	84706	genome.wustl.edu	37	16	46952547	46952547	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_133443.2	+1	validated	p.N305	0.962	61	0%	87	25.3%	29	20.6%	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
GPR97	222487	genome.wustl.edu	37	16	57712105	57712105	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_170776.4	+1	validated	p.D123	0.000	113	0%	133	15.8%	0	-	-	-	-	NULL
KIAA0664	23277	genome.wustl.edu	37	17	2597826	2597826	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015229.3	-1	validated	p.G923V	0.971	60	0%	77	13%	19	21%	benign(0.269)	tolerated(0.08)	neutral(0.329)	NULL
ALOX15	246	genome.wustl.edu	37	17	4536468	4536468	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001140.3	-1	validated	p.A464V	0.479	198	0%	213	14.6%	0	-	benign(0.225)	deleterious(0)	neutral(0.467)	HMMPfam_Lipoxygenase,superfamily_Lipoxygenase
SLC16A11	162515	genome.wustl.edu	37	17	6945388	6945388	+	Silent	SNP	T	T	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_153357.1	-1	validated	p.G371	0.232	29	0%	38	39.5%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ACADVL	37	genome.wustl.edu	37	17	7124899	7124899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000018.2	+1	reviewed	p.V174M	0.966	79	0%	80	13.8%	131	13.7%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_Acyl-CoA_dh_N,superfamily_Acyl-CoA dehydrogenase NM domain-like
NEURL4	84461	genome.wustl.edu	37	17	7230793	7230794	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032442.2	-1	validated	p.S231fs	0.059:0.136	-	-	-	-	-	-	-	-	-	NULL
MPRIP	23164	genome.wustl.edu	37	17	17049353	17049353	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015134.2	+1	validated	p.D385N	1.000	266	0%	306	42.2%	15	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAI1	10743	genome.wustl.edu	37	17	17698901	17698901	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_030665.3	+1	reviewed	p.S880N	1.000	31	0%	33	12.1%	9	11.1%	benign(0.323)	deleterious(0.02)	deleterious(0.484)	NULL
NOS2	4843	genome.wustl.edu	37	17	26096041	26096041	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000625.4	-1	reviewed	p.E666K	1.000	43	0%	58	46.6%	0	-	possibly_damaging(0.926)	deleterious(0)	deleterious(0.819)	HMMPfam_Flavodoxin_1,superfamily_Flavoproteins
ADAP2	55803	genome.wustl.edu	37	17	29250074	29250074	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018404.2	+1	validated	p.D71N	0.994	244	0%	272	17.6%	0	-	benign(0.355)	tolerated(0.09)	neutral(0.409)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
NF1	4763	genome.wustl.edu	37	17	29684089	29684089	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001042492.2	+1	reviewed	p.A2617V	1.000	243	0%	328	19.8%	10	0%	benign(0.009)	tolerated(0.3)	neutral(0.029)	NULL
LIG3	3980	genome.wustl.edu	37	17	33328949	33328949	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_013975.2	+1	reviewed	p.E834*	1.000	93	0%	105	12.4%	12	0%	-	-	-	NULL
ARHGAP23	57636	genome.wustl.edu	37	17	36623337	36623337	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020876.1	+1	provisional	p.P377	0.599	24	0%	30	26.7%	1	0%	-	-	-	NULL
AOC3	8639	genome.wustl.edu	37	17	41003572	41003572	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003734.2	+1	reviewed	p.V71A	1.000	52	0%	56	10.7%	0	-	probably_damaging(0.983)	deleterious(0.04)	deleterious(0.778)	HMMPfam_Cu_amine_oxidN2,superfamily_Cu_amine_oxidase_N-reg
RSAD1	55316	genome.wustl.edu	37	17	48557407	48557407	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018346.1	+1	provisional	p.G146R	0.003	58	0%	75	13.3%	11	9%	benign(0)	tolerated(1)	-	HMMSmart_Elp3,HMMPfam_Radical_SAM,superfamily_SSF102114
SPATA20	64847	genome.wustl.edu	37	17	48629483	48629483	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_022827.2	+1	provisional	p.G633	0.020	56	0%	58	15.5%	22	9%	-	-	-	superfamily_Six-hairpin glycosidases
LUC7L3	51747	genome.wustl.edu	37	17	48823303	48823304	+	Frame_Shift_Del	DEL	AG	AG	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006107.3	+1	reviewed	p.R306fs	0.994:0.998	-	-	-	-	-	-	-	-	-	NULL
LPO	4025	genome.wustl.edu	37	17	56342203	56342203	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_006151.2	+1	reviewed	p.A463T	1.000	149	0.7%	189	16.9%	5	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_An_peroxidase,superfamily_Peroxidase_super
RNF43	54894	genome.wustl.edu	37	17	56440011	56440011	+	Splice_Site	SNP	T	T	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_017763.4	-1	validated	e5-2	1.000	125	0%	141	39.7%	0	-	-	-	-	-
TBX4	9496	genome.wustl.edu	37	17	59544956	59544956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018488.2	+1	reviewed	p.R163W	1.000	47	0%	68	13.2%	0	-	probably_damaging(0.956)	deleterious(0)	deleterious(0.844)	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2
RHBDF2	79651	genome.wustl.edu	37	17	74469373	74469373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_024599.3	-1	validated	p.M619I	1.000	128	0%	112	11.6%	25	32%	possibly_damaging(0.949)	tolerated(0.06)	deleterious(0.716)	NULL
CBX2	84733	genome.wustl.edu	37	17	77757651	77757651	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005189.2	+1	reviewed	p.R137C	1.000	56	0%	71	29.6%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CBX2	84733	genome.wustl.edu	37	17	77757653	77757653	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005189.2	+1	reviewed	p.R137	0.001	50	0%	70	30%	6	0%	-	-	-	NULL
RNF213	57674	genome.wustl.edu	37	17	78306008	78306008	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000508628	+1	known	p.A1240	0.000	29	0%	45	22.2%	1	0%	-	-	-	NULL
NPC1	4864	genome.wustl.edu	37	18	21152117	21152117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000271.4	-1	reviewed	p.N70D	1.000	140	0%	202	15.3%	4	0%	benign(0)	tolerated(0.35)	neutral(0.021)	NULL
DTNA	1837	genome.wustl.edu	37	18	32395926	32395926	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001390.4	+1	reviewed	p.P219	0.002	348	0%	437	23.3%	1	0%	-	-	-	HMMPfam_efhand_2,superfamily_EF-hand
EPG5	57724	genome.wustl.edu	37	18	43458370	43458370	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020964.2	-1	validated	p.P1971	0.965	253	0%	293	18.1%	2	0%	-	-	-	NULL
CDH20	28316	genome.wustl.edu	37	18	59157872	59157872	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_031891.2	+1	reviewed	p.T29M	0.009	179	0%	237	28.7%	0	-	possibly_damaging(0.555)	tolerated(0.06)	deleterious(0.512)	NULL
FAM69C	125704	genome.wustl.edu	37	18	72114037	72114037	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001044369.2	-1	validated	p.A227V	0.989	40	0%	56	23.2%	0	-	probably_damaging(0.995)	tolerated(0.24)	deleterious(0.495)	NULL
C19orf21	126353	genome.wustl.edu	37	19	757734	757734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_173481.2	+1	predicted	p.A263V	0.000	23	0%	22	22.7%	20	15%	benign(0.072)	tolerated(0.52)	neutral(0.014)	NULL
ENSG00000207507	0	genome.wustl.edu	37	19	893586	893588	+	RNA	DEL	TTT	TTT	-	rs78469799		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	TTT	TTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000384776	+1	known	NULL	0.863:0.853:0.816	-	-	-	-	-	-	-	-	-	-
ENSG00000005206	0	genome.wustl.edu	37	19	2340154	2340155	+	Frame_Shift_Ins	INS	-	-	C	rs5826760	byCluster;by1000genomes	TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000452401	+1	known	p.F274fs	1.000:0.997	-	-	-	-	-	-	-	-	-	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
THOP1	7064	genome.wustl.edu	37	19	2810361	2810361	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_003249.3	+1	provisional	p.S505	0.015	61	0%	58	12.1%	36	16.6%	-	-	-	HMMPfam_Peptidase_M3,superfamily_SSF55486
ZNF556	80032	genome.wustl.edu	37	19	2878237	2878237	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_024967.1	+1	provisional	p.C427	0.332	89	0%	94	27.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MFSD12	126321	genome.wustl.edu	37	19	3542923	3542923	+	Silent	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_021731.2	-1	validated	p.S491	0.005	90	0%	107	23.4%	4	0%	-	-	-	NULL
EEF2	1938	genome.wustl.edu	37	19	3979938	3979938	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001961.3	-1	reviewed	p.A491	0.899	32	0%	57	21.1%	1327	25.6%	-	-	-	superfamily_Translation proteins
PIAS4	51588	genome.wustl.edu	37	19	4012977	4012977	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015897.2	+1	provisional	p.G28	1.000	43	0%	63	31.7%	18	27.7%	-	-	-	HMMPfam_SAP,HMMSmart_SAP
MPND	84954	genome.wustl.edu	37	19	4359979	4359979	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032868.4	+1	validated	p.V466I	0.000	36	0%	40	25%	14	28.5%	benign(0)	tolerated(0.23)	neutral(0.042)	NULL
MYO1F	4542	genome.wustl.edu	37	19	8618246	8618246	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_012335.3	-1	validated	p.G134	0.038	180	0%	195	46.2%	1	0%	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAVER1	125950	genome.wustl.edu	37	19	10434174	10434174	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_133452.2	-1	validated	p.A292	0.156	17	0%	16	37.5%	34	8.8%	-	-	-	HMMSmart_SM00360,superfamily_RNA-binding domain RBD
DCAF15	90379	genome.wustl.edu	37	19	14065247	14065247	+	Silent	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_138353.2	+1	provisional	p.A76	0.994	47	0%	46	23.9%	10	30%	-	-	-	NULL
LPHN1	22859	genome.wustl.edu	37	19	14268166	14268166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001008701.2	-1	reviewed	p.R886L	1.000	100	0%	124	28.2%	15	6.6%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_7tm_2
DDX39A	10212	genome.wustl.edu	37	19	14523893	14523893	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005804.2	-1	reviewed	p.R47Q	1.000	130	0%	156	11.5%	28	39.2%	possibly_damaging(0.44)	tolerated(0.23)	neutral(0.185)	superfamily_SSF52540
PKN1	5585	genome.wustl.edu	37	19	14580247	14580248	+	Frame_Shift_Del	DEL	GT	GT	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	GT	GT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_213560.1	+1	reviewed	p.C698fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
SIN3B	23309	genome.wustl.edu	37	19	16974569	16974569	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015260.1	+1	provisional	p.E481K	1.000	88	0%	88	11.4%	13	23%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_HDAC_interact,HMMSmart_SM00761
NR2F6	2063	genome.wustl.edu	37	19	17351572	17351572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005234.3	-1	validated	p.S94Y	1.000	122	0.8%	137	21.9%	81	13.5%	probably_damaging(0.98)	deleterious(0)	deleterious(0.869)	HMMPfam_zf-C4,HMMSmart_SM00399,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
USHBP1	83878	genome.wustl.edu	37	19	17375054	17375054	+	Splice_Site	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_031941.3	-1	validated	e1+1	0.835	76	0%	69	29%	0	-	-	-	-	-
DDX49	54555	genome.wustl.edu	37	19	19038639	19038639	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_019070.4	+1	validated	p.N389	1.000	149	0%	150	14.7%	58	13.7%	-	-	-	superfamily_SSF52540
LPAR2	9170	genome.wustl.edu	37	19	19735210	19735210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004720.5	-1	reviewed	p.R304H	1.000	59	0%	77	22.1%	36	19.4%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	superfamily_SSF81321
GMIP	51291	genome.wustl.edu	37	19	19740808	19740808	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_016573.2	-1	reviewed	p.P959	0.000	37	0%	55	20%	21	19%	-	-	-	NULL
ZNF181	339318	genome.wustl.edu	37	19	35232265	35232265	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001029997.3	+1	validated	p.G327*	1.000	224	0%	203	12.3%	1	100%	-	-	-	HMMSmart_SM00614,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF383	163087	genome.wustl.edu	37	19	37733693	37733693	+	Silent	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152604.1	+1	provisional	p.F185	0.854	138	0%	156	18.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CYP2B6	1555	genome.wustl.edu	37	19	41510225	41510225	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000767.4	+1	reviewed	p.R120C	0.000	301	0%	381	24.4%	0	-	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	HMMPfam_p450,superfamily_Cytochrome_P450
CYP2B6	1555	genome.wustl.edu	37	19	41515911	41515911	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000767.4	+1	reviewed	p.A279T	0.000	157	0%	217	16.1%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_p450,superfamily_Cytochrome_P450
CADM4	199731	genome.wustl.edu	37	19	44131331	44131331	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_145296.1	-1	validated	p.T117	0.982	286	0%	265	13.6%	38	23.6%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ZNF229	7772	genome.wustl.edu	37	19	44933000	44933000	+	Silent	SNP	G	G	A	rs189094366	by1000genomes	TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014518.2	-1	validated	p.G652	0.086	153	0%	197	18.3%	1	0%	-	-	-	superfamily_C2H2 and C2HC zinc fingers
MYH14	79784	genome.wustl.edu	37	19	50789839	50789839	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001077186.1	+1	reviewed	p.T1514R	0.898	31	0%	37	40.5%	43	48.8%	possibly_damaging(0.492)	tolerated(0.32)	neutral(0.188)	HMMPfam_Myosin_tail_1
POLD1	5424	genome.wustl.edu	37	19	50910411	50910411	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002691.2	+1	validated	p.V556I	1.000	38	0%	24	29.2%	12	0%	benign(0.053)	tolerated(0.94)	neutral(0.004)	HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,superfamily_SSF56672
MYBPC2	4606	genome.wustl.edu	37	19	50957558	50957558	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_004533.3	+1	validated	p.S649L	0.378	24	0%	26	30.8%	0	-	benign(0.289)	deleterious(0.04)	neutral(0.438)	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
ZNF766	90321	genome.wustl.edu	37	19	52793730	52793730	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001010851.2	+1	validated	p.G229D	0.000	101	0%	119	23.5%	1	0%	benign(0.004)	tolerated(0.19)	neutral(0.050)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PRKCG	5582	genome.wustl.edu	37	19	54394955	54394955	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002739.3	+1	reviewed	p.M186T	1.000	203	0.5%	233	18%	0	-	probably_damaging(0.973)	deleterious(0)	deleterious(0.859)	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB
TTYH1	57348	genome.wustl.edu	37	19	54930463	54930463	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001005367.1	+1	reviewed	p.V96	0.949	24	0%	41	17.1%	0	-	-	-	-	HMMPfam_Tweety
BRSK1	84446	genome.wustl.edu	37	19	55817694	55817694	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_032430.1	+1	validated	p.S655	0.996	54	0%	67	20.9%	1	0%	-	-	-	NULL
CCDC106	29903	genome.wustl.edu	37	19	56163994	56163994	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_013301.2	+1	validated	p.R242H	1.000	17	0%	17	35.3%	34	29.4%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
NLRP11	204801	genome.wustl.edu	37	19	56321510	56321511	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_145007.3	-1	validated	p.R155fs	0.036:0.013	-	-	-	-	-	-	-	-	-	HMMPfam_NACHT
ZNF749	388567	genome.wustl.edu	37	19	57956648	57956650	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	TTA	TTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001023561.2	+1	provisional	p.I713in_frame_del	0.145:0.001:0.000	-	-	-	-	-	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ATRN	8455	genome.wustl.edu	37	20	3529951	3529951	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_139321.2	+1	reviewed	p.M360V	1.000	334	0%	497	40.2%	6	66.6%	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain
ENSG00000251955	0	genome.wustl.edu	37	20	17168248	17168248	+	RNA	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000516146	+1	novel	NULL	0.262	19	0.000	9	0.444	0	-	-	-	-	-
PCSK2	5126	genome.wustl.edu	37	20	17389940	17389940	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002594.2	+1	reviewed	p.N192	0.782	361	0%	334	26.9%	0	-	-	-	-	HMMPfam_Peptidase_S8,superfamily_Subtilisin-like
MYLK2	85366	genome.wustl.edu	37	20	30419615	30419615	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_033118.3	+1	reviewed	p.E512K	1.000	127	0%	170	15.9%	1	0%	probably_damaging(0.976)	deleterious(0.04)	deleterious(0.767)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
ASXL1	171023	genome.wustl.edu	37	20	31024926	31024926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015338.5	+1	reviewed	p.V1471M	1.000	113	0%	149	43.6%	20	65%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
CTNNBL1	56259	genome.wustl.edu	37	20	36407692	36407692	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_030877.3	+1	reviewed	p.R329H	1.000	482	0%	592	23.6%	13	23%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	superfamily_ARM repeat
DHX35	60625	genome.wustl.edu	37	20	37657133	37657133	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_021931.2	+1	reviewed	p.G625V	1.000	249	0%	335	14.6%	3	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DUF1605
PABPC1L	80336	genome.wustl.edu	37	20	43550311	43550311	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001124756.1	+1	provisional	p.R272Q	1.000	55	0%	60	20%	2	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
PIGT	51604	genome.wustl.edu	37	20	44047614	44047614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015937.4	+1	reviewed	p.A163V	1.000	262	0%	340	13.8%	143	25.8%	unknown(0)	tolerated(0.89)	-	HMMPfam_Gpi16
TSHZ2	128553	genome.wustl.edu	37	20	51871373	51871376	+	Frame_Shift_Del	DEL	AGTT	AGTT	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	AGTT	AGTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_173485.4	+1	validated	p.L460fs	0.983:0.844:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
CYP24A1	1591	genome.wustl.edu	37	20	52781092	52781092	+	Missense_Mutation	SNP	G	G	A	rs16999131	byCluster	TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000782.4	-1	reviewed	p.T248M	0.993	333	0%	414	42.3%	38	36.8%	benign(0.069)	deleterious(0.02)	neutral(0.388)	HMMPfam_p450,superfamily_Cytochrome_P450
PMEPA1	56937	genome.wustl.edu	37	20	56234686	56234686	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020182.3	-1	validated	p.T59	0.906	33	0%	48	20.8%	114	21.9%	-	-	-	NULL
CDH26	60437	genome.wustl.edu	37	20	58569533	58569533	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000370991	+1	known	p.G144*	0.690	65	0%	76	21.1%	0	-	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_Cadherin,superfamily_Cadherin-like
RIPK4	54101	genome.wustl.edu	37	21	43176748	43176748	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_020639.2	-1	reviewed	p.P137	0.268	48	0%	50	36%	7	0%	-	-	-	superfamily_Kinase_like,HMMPfam_Pkinase
LSS	4047	genome.wustl.edu	37	21	47628170	47628170	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001001438.2	-1	reviewed	p.R438C	0.911	194	0%	188	20.2%	18	16.6%	benign(0.007)	deleterious(0.04)	neutral(0.349)	superfamily_Terp_cyc_toroid
LOC100288309	100288309	genome.wustl.edu	37	22	19163568	19163568	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	XM_002344193.1	+1	model	p.H47Y	0.996	71	0%	83	20.5%	179	29%	-	-	-	NULL
RNF185	91445	genome.wustl.edu	37	22	31601320	31601320	+	RNA	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NR_024209.1	+1	validated	NULL	0.000	61	0%	83	27.7%	12	25%	-	-	-	-
RBFOX2	23543	genome.wustl.edu	37	22	36156026	36156026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001082578.1	-1	reviewed	p.A340T	1.000	137	0%	168	16.7%	10	10%	benign(0.038)	deleterious(0.02)	neutral(0.385)	NULL
CSF2RB	1439	genome.wustl.edu	37	22	37326776	37326776	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000395.2	+1	reviewed	p.C306R	0.438	16	0%	21	23.8%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Fibronectin type III
CDC42EP1	11135	genome.wustl.edu	37	22	37964409	37964429	+	In_Frame_Del	DEL	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT	-	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	CAGCGCCTGCTGCAAACCCCT	CAGCGCCTGCTGCAAACCCCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152243.2	+1	reviewed	p.ANPSAPA257in_frame_del	0.003:0.000:0.000:0.000:0.000:0.019:0.024:0.016:0.013:0.013:0.000:0.000:0.000:0.001:0.000:0.001:0.004:0.011:0.056:0.092:0.133	-	-	-	-	-	-	-	-	-	NULL
FAM83F	113828	genome.wustl.edu	37	22	40415332	40415332	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_138435.2	+1	validated	p.R217Q	0.937	125	0%	167	38.3%	1	0%	possibly_damaging(0.528)	tolerated(0.38)	neutral(0.196)	HMMPfam_DUF1669,superfamily_Phospholipase D/nuclease
TNRC6B	23112	genome.wustl.edu	37	22	40696540	40696540	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_015088.2	+1	validated	p.Q1154*	1.000	269	0%	370	22.7%	4	25%	-	-	-	NULL
EFCAB6	64800	genome.wustl.edu	37	22	44062998	44062998	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_022785.2	-1	validated	p.H657Y	0.000	546	0%	596	24.7%	0	-	benign(0.014)	tolerated(0.05)	neutral(0.346)	HMMSmart_SM00054,superfamily_EF-hand
ZBED4	9889	genome.wustl.edu	37	22	50279042	50279042	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014838.2	+1	validated	p.V578M	0.990	75	0%	78	24.4%	9	33.3%	possibly_damaging(0.814)	deleterious(0.02)	deleterious(0.691)	HMMPfam_zf-BED,HMMSmart_SM00614
SBF1	6305	genome.wustl.edu	37	22	50906297	50906297	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002972.2	-1	validated	p.F66S	1.000	42	0%	56	17.9%	6	16.6%	probably_damaging(0.965)	deleterious(0)	deleterious(0.851)	HMMPfam_uDENN,HMMSmart_SM00800
IL3RA	3563	genome.wustl.edu	37	X	1471069	1471069	+	Silent	SNP	G	G	A	rs17880680		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002183.2	+1	reviewed	p.A125	0.000	271	0%	333	29.4%	4	25%	-	-	-	HMMPfam_Haemat_rec_S_F2,PatternScan_HEMATOPO_REC_S_F2,superfamily_FN_III-like
AKAP17A	8227	genome.wustl.edu	37	X	1719945	1719945	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_005088.2	+1	validated	p.V516M	0.001	23	0%	29	17.2%	10	40%	benign(0.229)	-	-	NULL
FAM47B	170062	genome.wustl.edu	37	X	34962716	34962716	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_152631.2	+1	validated	p.I590F	0.474	313	0%	229	11.8%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
PORCN	64840	genome.wustl.edu	37	X	48368317	48368317	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_203475.1	+1	reviewed	p.L37I	1.000	46	0%	46	19.6%	20	25%	possibly_damaging(0.779)	tolerated(0.42)	neutral(0.305)	NULL
PLP2	5355	genome.wustl.edu	37	X	49029779	49029779	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_002668.2	+1	reviewed	p.T98	1.000	284	0.4%	368	18.2%	195	61%	-	-	-	HMMPfam_MARVEL
USP27X	389856	genome.wustl.edu	37	X	49645375	49645375	+	Silent	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001145073.1	+1	provisional	p.R155	0.262	205	0%	200	26.5%	3	0%	-	-	-	HMMPfam_UCH,superfamily_SSF54001
AR	367	genome.wustl.edu	37	X	66765542	66765542	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000044.2	+1	reviewed	p.L185P	1.000	25	0%	57	26.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Androgen_recep
OGT	8473	genome.wustl.edu	37	X	70774430	70774430	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_181672.2	+1	reviewed	p.R239H	1.000	356	0%	521	23.6%	14	35.7%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
PABPC5	140886	genome.wustl.edu	37	X	90691338	90691338	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_080832.2	+1	reviewed	p.K254	0.995	175	0%	215	25.1%	0	-	-	-	-	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD
SRPX2	27286	genome.wustl.edu	37	X	99917286	99917286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_014467.2	+1	reviewed	p.R93W	1.000	203	0%	292	14%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Sushi,HMMSmart_CCP,superfamily_Complement_control_module
DRP2	1821	genome.wustl.edu	37	X	100509879	100509880	+	Frame_Shift_Ins	INS	-	-	AC	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001939.2	+1	reviewed	p.S719fs	1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114426760	114426760	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001145346.1	+1	validated	p.R919P	0.223	16	0%	19	26.3%	0	-	possibly_damaging(0.809)	deleterious(0)	deleterious(0.749)	NULL
GRIA3	2892	genome.wustl.edu	37	X	122599620	122599620	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000264357	+1	known	p.S807I	1.000	294	0%	317	47.3%	0	-	benign(0.269)	tolerated(0.06)	neutral(0.351)	HMMPfam_Lig_chan
ACTRT1	139741	genome.wustl.edu	37	X	127185478	127185478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_138289.3	-1	reviewed	p.E236D	0.000	167	0%	180	21.7%	0	-	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
MBNL3	55796	genome.wustl.edu	37	X	131525093	131525093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_018388.3	-1	reviewed	p.R185C	1.000	137	0%	176	15.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-CCCH,HMMSmart_SM00356,superfamily_CCCH zinc finger
LOC100131128	100131128	genome.wustl.edu	37	X	133300928	133300928	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	XM_001719937.2	+1	model	p.R106Q	1.000	237	0%	221	17.2%	1	0%	-	-	-	HMMPfam_zf-Tim10_DDP
FAM122C	159091	genome.wustl.edu	37	X	133979420	133979420	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_138819.3	+1	validated	p.G112C	0.012	98	0%	154	18.8%	0	-	probably_damaging(0.992)	tolerated(0.25)	deleterious(0.484)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138813831	138813831	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	ENST00000433868	-1	known	p.R160*	1.000	400	0.3%	386	37.8%	3	0%	-	-	-	NULL
NSDHL	50814	genome.wustl.edu	37	X	152014976	152014976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001129765.1	+1	reviewed	p.Q36H	0.012	233	0%	264	17.8%	6	0%	possibly_damaging(0.823)	deleterious(0.03)	deleterious(0.676)	NULL
ATP2B3	492	genome.wustl.edu	37	X	152807350	152807350	+	Silent	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001001344.2	+1	reviewed	p.A210	0.221	70	0%	98	12.2%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transduction domain A,superfamily_Calcium ATPase transmembrane domain M
L1CAM	3897	genome.wustl.edu	37	X	153132202	153132202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_000425.3	-1	reviewed	p.T778M	0.985	105	0%	98	34.7%	1	0%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SLC10A3	8273	genome.wustl.edu	37	X	153716714	153716714	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A17M-01A-21D-A12J-09	TCGA-D1-A17M-10A-01D-A12J-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	afa81d2a-5cbd-4b24-b764-7ee19fd75130	c5a3eca5-500e-494c-99dc-59b0133bab76	NM_001142392.1	-1	reviewed	p.E189G	1.000	56	0%	61	18%	37	0%	probably_damaging(0.985)	deleterious(0.02)	deleterious(0.815)	NULL
