Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
COBL	23242	genome.wustl.edu	37	7	51095504	51095504	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	7	51095504	51095504	G	T	SNP	COBL	NM_015198.3	human	genbank	58_37c	-1	validated	missense	c.3289	p.P1097T	0.845	NULL	HMMPfam_WH2,HMMSmart_SM00246,HMMPfam_Cobl	-	no_errors
EIF2AK3	9451	genome.wustl.edu	37	2	88885398	88885398	+	Silent	SNP	C	C	A	rs186435400	by1000genomes	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	2	88885398	88885398	C	A	SNP	EIF2AK3	NM_004836.5	human	genbank	58_37c	-1	reviewed	silent	c.1611	p.T537	0.884	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_Quinoprotein alcohol dehydrogenase-like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
GP1BA	2811	genome.wustl.edu	37	17	4837701	4837701	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	17	4837701	4837701	C	G	SNP	GP1BA	NM_000173.5	human	genbank	58_37c	+1	reviewed	missense	c.1763	p.S588W	0.001	NULL	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
GPKOW	27238	genome.wustl.edu	37	X	48978773	48978773	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	X	48978773	48978773	G	T	SNP	GPKOW	NM_015698.4	human	genbank	58_37c	-1	validated	missense	c.431	p.A144E	0.467	NULL	HMMPfam_G-patch,HMMSmart_G_patch,HMMPfam_KOW,HMMSmart_KOW	-	no_errors
HIST1H2AE	3012	genome.wustl.edu	37	6	26217367	26217367	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	6	26217367	26217367	G	A	SNP	HIST1H2AE	NM_021052.2	human	genbank	58_37c	+1	reviewed	silent	c.165	p.V55	1.000	HMMSmart_SM00414,HMMPfam_Histone,superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
KCNK2	3776	genome.wustl.edu	37	1	215408369	215408369	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	1	215408369	215408369	C	T	SNP	KCNK2	NM_001017425.2	human	genbank	58_37c	+1	reviewed	missense	c.1162	p.H388Y	1.000	NULL	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels	-	no_errors
KIAA1543	57662	genome.wustl.edu	37	19	7682810	7682810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	19	7682810	7682810	C	T	SNP	KIAA1543	NM_001080429.2	human	genbank	58_37c	+1	validated	missense	c.3698	p.S1233L	0.998	superfamily_PRC-barrel domain,HMMPfam_DUF1781	superfamily_PRC-barrel domain,HMMPfam_DUF1781,superfamily_Calponin-homology domain CH-domain	-	no_errors
NEK3	4752	genome.wustl.edu	37	13	52726763	52726763	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	13	52726763	52726763	T	-	DEL	NEK3	ENST00000258597	human	ensembl	58_37c	-1	known	frame_shift_del	c.374	p.H125fs	1.000	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
PHLDA1	22822	genome.wustl.edu	37	12	76424952	76424952	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	12	76424952	76424952	C	G	SNP	PHLDA1	NM_007350.3	human	genbank	58_37c	-1	reviewed	missense	c.570	p.Q190H	0.996	HMMSmart_PH,superfamily_SSF50729	HMMSmart_PH,superfamily_SSF50729	-	no_errors
RECQL4	9401	genome.wustl.edu	37	8	145739483	145739483	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	8	145739483	145739483	C	T	SNP	RECQL4	ENST00000428558	human	ensembl	58_37c	-1	known	silent	c.1887	p.R629	0.998	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RUNX1	861	genome.wustl.edu	37	21	36252853	36252853	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	21	36252853	36252853	C	G	SNP	RUNX1	NM_001754.4	human	genbank	58_37c	-1	reviewed	splice_site	c.508+1	e4+1	1.000	-	-	-	no_errors
SLC46A1	113235	genome.wustl.edu	37	17	26732105	26732105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	17	26732105	26732105	G	A	SNP	SLC46A1	NM_080669.3	human	genbank	58_37c	-1	reviewed	missense	c.610	p.R204W	0.340	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	PatternScan_SUGAR_TRANSPORT_1,HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
THNSL1	79896	genome.wustl.edu	37	10	25313006	25313006	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	10	25313006	25313006	G	T	SNP	THNSL1	NM_024838.4	human	genbank	58_37c	+1	validated	missense	c.854	p.G285V	0.674	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes	HMMPfam_SKI,HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TLR8	51311	genome.wustl.edu	37	X	12937272	12937272	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	X	12937272	12937272	A	G	SNP	TLR8	NM_138636.4	human	genbank	58_37c	+1	reviewed	missense	c.113	p.E38G	0.009	superfamily_SSF52058	HMMPfam_TIR,superfamily_TIR,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52047,superfamily_SSF52058	-	no_errors
TRERF1	55809	genome.wustl.edu	37	6	42227276	42227276	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	6	42227276	42227276	C	T	SNP	TRERF1	NM_033502.2	human	genbank	58_37c	-1	reviewed	silent	c.2070	p.P690	0.811	NULL	HMMPfam_ELM2,HMMSmart_SM00717,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
TRHDE	29953	genome.wustl.edu	37	12	72956762	72956762	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	12	72956762	72956762	C	G	SNP	TRHDE	NM_013381.2	human	genbank	58_37c	+1	reviewed	missense	c.1849	p.Q617E	1.000	NULL	PatternScan_ZINC_PROTEASE,HMMPfam_Peptidase_M1,superfamily_SSF55486,superfamily_SSF63737	-	no_errors
TRIM11	81559	genome.wustl.edu	37	1	228582831	228582831	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	1	228582831	228582831	C	T	SNP	TRIM11	NM_145214.2	human	genbank	58_37c	-1	reviewed	missense	c.982	p.G328S	0.044	HMMSmart_SM00589	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,HMMSmart_SM00589,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
ZMYM3	9203	genome.wustl.edu	37	X	70461089	70461089	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A141-01A-11D-A10Y-09	TCGA-D8-A141-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	807791d8-b6c0-4722-bf5c-d5fa30baffc6	8bd52c2f-131d-40cc-8c24-f8021128cb93	X	70461089	70461089	T	C	SNP	ZMYM3	NM_005096.3	human	genbank	58_37c	-1	reviewed	missense	c.3908	p.Y1303C	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_SM00746	-	no_errors
