Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABAT	18	genome.wustl.edu	37	16	8862091	8862091	+	Silent	SNP	C	C	T	rs1139522	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	16	8862091	8862091	C	T	SNP	ABAT	NM_000663.4	human	genbank	58_37c	+1	reviewed	silent	c.645	p.G215	0.975	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major	HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3,superfamily_PyrdxlP-dep_Trfase_major	-	no_errors
ABCB11	8647	genome.wustl.edu	37	2	169826581	169826581	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	169826581	169826581	C	A	SNP	ABCB11	NM_003742.2	human	genbank	58_37c	-1	reviewed	missense	c.1783	p.A595S	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACTR8	93973	genome.wustl.edu	37	3	53908256	53908256	+	Silent	SNP	A	A	C	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	3	53908256	53908256	A	C	SNP	ACTR8	NM_022899.4	human	genbank	58_37c	-1	validated	silent	c.1047	p.T349	0.645	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067	-	no_errors
AHNAK2	113146	genome.wustl.edu	37	14	105417688	105417688	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	14	105417688	105417688	A	G	SNP	AHNAK2	NM_138420.2	human	genbank	58_37c	-1	validated	missense	c.4100	p.M1367T	0.001	NULL	HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
APOH	350	genome.wustl.edu	37	17	64219815	64219815	+	Splice_Site	SNP	C	C	T	rs113148457	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	17	64219815	64219815	C	T	SNP	APOH	NM_000042.2	human	genbank	58_37c	-1	reviewed	splice_site	c.415+1	e4+1	1.000	-	-	-	no_errors
ARPC1B	10095	genome.wustl.edu	37	7	98988555	98988555	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	7	98988555	98988555	G	A	SNP	ARPC1B	NM_005720.2	human	genbank	58_37c	+1	reviewed	silent	c.540	p.P180	0.033	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ATP6V0A2	23545	genome.wustl.edu	37	12	124241429	124241429	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	12	124241429	124241429	C	T	SNP	ATP6V0A2	NM_012463.3	human	genbank	58_37c	+1	reviewed	silent	c.2361	p.V787	0.945	HMMPfam_V_ATPase_I	HMMPfam_V_ATPase_I	-	no_errors
AWAT1	158833	genome.wustl.edu	37	X	69456923	69456923	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	X	69456923	69456923	G	C	SNP	AWAT1	NM_001013579.2	human	genbank	58_37c	+1	reviewed	missense	c.285	p.E95D	0.881	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
C3orf19	51244	genome.wustl.edu	37	3	14708387	14708387	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	3	14708387	14708387	G	A	SNP	C3orf19	NM_016474.4	human	genbank	58_37c	+1	validated	silent	c.657	p.E219	0.958	NULL	NULL	-	no_errors
CACNA1B	774	genome.wustl.edu	37	9	140901245	140901245	+	Silent	SNP	A	A	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	9	140901245	140901245	A	T	SNP	CACNA1B	NM_000718.2	human	genbank	58_37c	+1	validated	silent	c.2001	p.A667	0.069	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CDH12	1010	genome.wustl.edu	37	5	21752184	21752184	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	5	21752184	21752184	C	A	SNP	CDH12	NM_004061.3	human	genbank	58_37c	-1	reviewed	missense	c.2047	p.V683L	1.000	HMMPfam_Cadherin_C	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
CDK19	0	genome.wustl.edu	37	6	110942402	110942402	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	110942402	110942402	C	G	SNP	CDK19	NM_015076.3	human	genbank	58_37c	-1	reviewed	missense	c.1282	p.D428H	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CYP4F11	57834	genome.wustl.edu	37	19	16035659	16035659	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	16035659	16035659	C	T	SNP	CYP4F11	NM_001128932.1	human	genbank	58_37c	-1	reviewed	missense	c.559	p.A187T	0.000	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DEPDC4	120863	genome.wustl.edu	37	12	100660730	100660730	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	12	100660730	100660730	C	G	SNP	DEPDC4	NM_152317.2	human	genbank	58_37c	-1	provisional	missense	c.125	p.R42P	0.000	NULL	"HMMPfam_DEP,HMMSmart_SM00049,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
DPPA2	151871	genome.wustl.edu	37	3	109027096	109027096	+	Silent	SNP	C	C	G	rs188432946	by1000genomes	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	3	109027096	109027096	C	G	SNP	DPPA2	NM_138815.3	human	genbank	58_37c	-1	validated	silent	c.441	p.S147	0.000	NULL	HMMSmart_SAP	-	no_errors
ENSG00000196758	0	genome.wustl.edu	37	2	240500438	240500438	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	240500438	240500438	G	A	SNP	ENSG00000196758	ENST00000358775	human	ensembl	58_37c	+1	known	missense	c.319	p.V107I	0.003	NULL	NULL	-	no_errors
ENTPD1	953	genome.wustl.edu	37	10	97602252	97602252	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	10	97602252	97602252	G	A	SNP	ENTPD1	NM_001776.5	human	genbank	58_37c	+1	validated	splice_site	c.413+1	e4+1	1.000	-	-	-	no_errors
ETF1	2107	genome.wustl.edu	37	5	137844062	137844062	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	5	137844062	137844062	G	A	SNP	ETF1	NM_004730.2	human	genbank	58_37c	-1	validated	nonsense	c.1246	p.R416*	1.000	HMMPfam_eRF1_3,superfamily_L30e-like	HMMPfam_eRF1_1,HMMPfam_eRF1_2,HMMPfam_eRF1_3,superfamily_Translational machinery components,superfamily_L30e-like,superfamily_N-terminal domain of eukaryotic peptide chain release factor subunit 1 ERF1	-	no_errors
FAM21A	387680	genome.wustl.edu	37	10	51827934	51827934	+	Missense_Mutation	SNP	G	A	A	rs55875820	byCluster;by1000genomes	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	10	51827934	51827934	G	A	SNP	FAM21A	NM_001005751.1	human	genbank	58_37c	+1	validated	missense	c.73	p.V25M	1.000	NULL	NULL	-	no_errors
FAM58A	92002	genome.wustl.edu	37	X	152860089	152860089	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	X	152860089	152860089	C	T	SNP	FAM58A	ENST00000276345	human	ensembl	58_37c	-1	known	nonsense	c.339	p.W113*	1.000	HMMSmart_CYCLIN,superfamily_Cyclin_like	HMMSmart_CYCLIN,superfamily_Cyclin_like	-	no_errors
FDPS	2224	genome.wustl.edu	37	1	155290277	155290277	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	155290277	155290277	G	A	SNP	FDPS	NM_001135821.1	human	genbank	58_37c	+1	reviewed	silent	c.1137	p.V379	0.001	HMMPfam_polyprenyl_synt,superfamily_Terpenoid_synth	HMMPfam_polyprenyl_synt,PatternScan_POLYPRENYL_SYNTHET_2,PatternScan_POLYPRENYL_SYNTHET_1,superfamily_Terpenoid_synth	-	no_errors
FGD5	152273	genome.wustl.edu	37	3	14862067	14862067	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	3	14862067	14862067	G	A	SNP	FGD5	NM_152536.3	human	genbank	58_37c	+1	validated	missense	c.1489	p.V497I	1.000	NULL	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_PH,HMMSmart_SM00233,superfamily_FYVE/PHD zinc finger,PatternScan_C_TYPE_LECTIN_1,superfamily_PH domain-like	-	no_errors
FGFR1	2260	genome.wustl.edu	37	8	38275446	38275446	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	38275446	38275446	G	A	SNP	FGFR1	NM_023110.2	human	genbank	58_37c	-1	reviewed	silent	c.1494	p.I498	0.060	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin	-	no_errors
FRMPD4	9758	genome.wustl.edu	37	X	12704307	12704307	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	X	12704307	12704307	G	T	SNP	FRMPD4	NM_014728.3	human	genbank	58_37c	+1	reviewed	missense	c.665	p.C222F	1.000	HMMSmart_B41	PatternScan_WW_DOMAIN_1,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41	-	no_errors
FSD2	123722	genome.wustl.edu	37	15	83437686	83437686	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	15	83437686	83437686	G	A	SNP	FSD2	NM_001007122.2	human	genbank	58_37c	-1	provisional	missense	c.1499	p.S500L	1.000	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like	-	no_errors
GALNT7	51809	genome.wustl.edu	37	4	174223291	174223291	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	4	174223291	174223291	T	C	SNP	GALNT7	ENST00000505308	human	ensembl	58_37c	+1	known	missense	c.632	p.V211A	1.000	superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GLI3	2737	genome.wustl.edu	37	7	42005086	42005086	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	7	42005086	42005086	G	A	SNP	GLI3	NM_000168.5	human	genbank	58_37c	-1	reviewed	silent	c.3585	p.N1195	0.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
GRIA2	2891	genome.wustl.edu	37	4	158282695	158282695	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	4	158282695	158282695	C	T	SNP	GRIA2	NM_000826.3	human	genbank	58_37c	+1	reviewed	missense	c.2297	p.P766L	1.000	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
GRIA3	2892	genome.wustl.edu	37	X	122598837	122598837	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	X	122598837	122598837	C	A	SNP	GRIA3	ENST00000264357	human	ensembl	58_37c	+1	known	missense	c.2198	p.A733D	1.000	HMMPfam_Lig_chan,HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HDAC9	9734	genome.wustl.edu	37	7	18833076	18833076	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	7	18833076	18833076	G	T	SNP	HDAC9	NM_178425.2	human	genbank	58_37c	+1	reviewed	splice_site	c.2322+1	e16+1	1.000	-	-	-	no_errors
HLA-DRB1	3123	genome.wustl.edu	37	6	32549362	32549362	+	Silent	SNP	G	G	A	rs3200488	byFrequency	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	32549362	32549362	G	A	SNP	HLA-DRB1	NM_002124.2	human	genbank	58_37c	-1	reviewed	silent	c.624	p.S208	0.270	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
INTS7	25896	genome.wustl.edu	37	1	212148707	212148707	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	212148707	212148707	T	C	SNP	INTS7	NM_015434.2	human	genbank	58_37c	-1	provisional	missense	c.1616	p.H539R	1.000	NULL	superfamily_ARM repeat	-	no_errors
KERA	11081	genome.wustl.edu	37	12	91449597	91449597	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	12	91449597	91449597	C	T	SNP	KERA	NM_007035.3	human	genbank	58_37c	-1	reviewed	silent	c.462	p.V154	0.997	HMMPfam_LRR_1,superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
KIAA1009	22832	genome.wustl.edu	37	6	84904772	84904772	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	84904772	84904772	C	T	SNP	KIAA1009	NM_014895.2	human	genbank	58_37c	-1	validated	missense	c.857	p.S286N	0.971	NULL	NULL	-	no_errors
KLC4	89953	genome.wustl.edu	37	6	43029294	43029294	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	43029294	43029294	C	T	SNP	KLC4	NM_201523.1	human	genbank	58_37c	+1	validated	missense	c.275	p.S92F	1.000	superfamily_TPR-like	HMMPfam_TPR_1,HMMPfam_Rab5-bind,PatternScan_KINESIN_LIGHT,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
LENEP	55891	genome.wustl.edu	37	1	154966145	154966145	+	Missense_Mutation	SNP	G	G	A	rs142005786	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	154966145	154966145	G	A	SNP	LENEP	NM_018655.2	human	genbank	58_37c	+1	reviewed	missense	c.62	p.R21Q	0.000	NULL	NULL	-	no_errors
LGSN	51557	genome.wustl.edu	37	6	63989962	63989962	+	Silent	SNP	A	A	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	63989962	63989962	A	T	SNP	LGSN	NM_016571.2	human	genbank	58_37c	-1	reviewed	silent	c.1494	p.A498	0.903	superfamily_Glutamine synthetase/guanido kinase	HMMPfam_Gln-synt_C,HMMPfam_Gln-synt_N,superfamily_Glutamine synthetase N-terminal domain,superfamily_Glutamine synthetase/guanido kinase	-	no_errors
LOC100288105	0	genome.wustl.edu	37	5	140242970	140242970	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	5	140242970	140242970	G	A	SNP	LOC100288105	XM_002342568.1	human	genbank	58_37c	-1	model	silent	c.6	p.H2	0.000	NULL	NULL	-	no_errors
LOC342346	342346	genome.wustl.edu	37	16	4626490	4626490	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	16	4626490	4626490	C	-	DEL	LOC342346	NM_001145011.1	human	genbank	58_37c	+1	predicted	frame_shift_del	c.2009	p.K671fs	0.006	NULL	NULL	-	no_errors
LOC441228	441228	genome.wustl.edu	37	7	56358575	56358575	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	7	56358575	56358575	C	T	SNP	LOC441228	XR_016387.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LRRC40	55631	genome.wustl.edu	37	1	70641557	70641557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	70641557	70641557	G	A	SNP	LRRC40	NM_017768.4	human	genbank	58_37c	-1	validated	missense	c.913	p.P305S	1.000	superfamily_SSF52058	HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
LRRC7	57554	genome.wustl.edu	37	1	70446130	70446130	+	Silent	SNP	A	A	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	70446130	70446130	A	G	SNP	LRRC7	NM_020794.2	human	genbank	58_37c	+1	validated	silent	c.666	p.L222	0.996	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like	-	no_errors
MEP1A	4224	genome.wustl.edu	37	6	46787380	46787380	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	46787380	46787380	C	A	SNP	MEP1A	NM_005588.2	human	genbank	58_37c	+1	validated	missense	c.495	p.H165Q	0.948	HMMPfam_Astacin,HMMSmart_ZnMc,superfamily_SSF55486	HMMPfam_MAM,HMMSmart_MAM,PatternScan_MAM_1,HMMPfam_Astacin,HMMPfam_MATH,HMMSmart_MATH,PatternScan_ZINC_PROTEASE,HMMSmart_ZnMc,HMMPfam_EGF,HMMSmart_EGF,superfamily_Traf_like,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF55486,superfamily_SSF57196	-	no_errors
MIR342	0	genome.wustl.edu	37	14	100576047	100576047	+	RNA	SNP	A	A	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	14	100576047	100576047	A	G	SNP	MIR342	ENST00000362212	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.993	-	-	-	no_errors
MTMR12	54545	genome.wustl.edu	37	5	32233991	32233991	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	5	32233991	32233991	A	C	SNP	MTMR12	NM_001040446.1	human	genbank	58_37c	-1	reviewed	missense	c.1562	p.V521G	1.000	superfamily_(Phosphotyrosine protein) phosphatases II	HMMPfam_Myotub-related,superfamily_PH domain-like,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1269544	1269544	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	11	1269544	1269544	A	-	DEL	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.11443	p.T3815fs	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MYB	4602	genome.wustl.edu	37	6	135520049	135520049	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	135520049	135520049	T	G	SNP	MYB	NM_001130173.1	human	genbank	58_37c	+1	reviewed	missense	c.1570	p.L524V	1.000	HMMPfam_Cmyb_C	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Wos2,HMMPfam_Myb_DNA-binding,HMMPfam_Cmyb_C	-	no_errors
NDUFA10	4705	genome.wustl.edu	37	2	240954240	240954242	+	In_Frame_Del	DEL	GAT	GAT	-	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	240954240	240954242	GAT	-	DEL	NDUFA10	NM_004544.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.585_583	p.I195in_frame_del	0.000:0.000:0.000	HMMPfam_dNK,superfamily_SSF52540	HMMPfam_dNK,superfamily_SSF52540	-	no_errors
NINJ2	4815	genome.wustl.edu	37	12	675138	675138	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	12	675138	675138	G	A	SNP	NINJ2	NM_016533.4	human	genbank	58_37c	-1	validated	silent	c.378	p.I126	0.488	HMMPfam_Ninjurin	HMMPfam_Ninjurin	-	no_errors
NKAIN2	154215	genome.wustl.edu	37	6	124676437	124676437	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	124676437	124676437	G	A	SNP	NKAIN2	NM_001040214.1	human	genbank	58_37c	+1	reviewed	missense	c.217	p.V73I	1.000	HMMPfam_NKAIN	HMMPfam_NKAIN	-	no_errors
NTHL1	4913	genome.wustl.edu	37	16	2096293	2096293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	16	2096293	2096293	C	T	SNP	NTHL1	NM_002528.5	human	genbank	58_37c	-1	reviewed	missense	c.214	p.D72N	0.034	NULL	HMMPfam_HHH,HMMPfam_HhH-GPD,HMMSmart_ENDO3c,HMMSmart_FES,PatternScan_ENDONUCLEASE_III_1,PatternScan_ENDONUCLEASE_III_2,superfamily_DNA_glycsylse	-	no_errors
OTUD4	54726	genome.wustl.edu	37	4	146064523	146064523	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	4	146064523	146064523	C	T	SNP	OTUD4	NM_001102653.1	human	genbank	58_37c	-1	reviewed	silent	c.1482	p.A494	0.988	NULL	HMMPfam_OTU,superfamily_SSF54001	-	no_errors
PARP4	143	genome.wustl.edu	37	13	25058867	25058867	+	Missense_Mutation	SNP	C	C	T	rs143070451	byFrequency	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	13	25058867	25058867	C	T	SNP	PARP4	NM_006437.3	human	genbank	58_37c	-1	reviewed	missense	c.1372	p.V458I	0.992	HMMPfam_PARP,superfamily_SSF56399	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_VWA,HMMSmart_VWA,superfamily_PARP_reg,HMMSmart_VIT,HMMPfam_PARP,HMMPfam_VIT,superfamily_SSF53300,superfamily_SSF56399	-	no_errors
PSMC4	5704	genome.wustl.edu	37	19	40487109	40487109	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	40487109	40487109	T	C	SNP	PSMC4	NM_006503.2	human	genbank	58_37c	+1	reviewed	missense	c.1154	p.L385S	1.000	HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
PTGER1	5731	genome.wustl.edu	37	19	14583533	14583533	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	14583533	14583533	C	T	SNP	PTGER1	NM_000955.2	human	genbank	58_37c	-1	reviewed	missense	c.1048	p.V350M	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
RCAN1	1827	genome.wustl.edu	37	21	35890532	35890532	+	Silent	SNP	T	T	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	21	35890532	35890532	T	G	SNP	RCAN1	NM_004414.5	human	genbank	58_37c	-1	reviewed	silent	c.609	p.A203	0.600	HMMPfam_Calcipressin	HMMPfam_Calcipressin	-	no_errors
RRP7B	91695	genome.wustl.edu	37	22	42972063	42972063	+	RNA	SNP	C	C	T	rs142752113	by1000genomes	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	22	42972063	42972063	C	T	SNP	RRP7B	NR_002184.2	human	genbank	58_37c	-1	provisional	rna	NULL	NULL	0.989	-	-	-	pseudogene
SCARA3	51435	genome.wustl.edu	37	8	27516828	27516828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	27516828	27516828	G	A	SNP	SCARA3	NM_016240.2	human	genbank	58_37c	+1	reviewed	missense	c.1141	p.V381M	1.000	NULL	HMMPfam_Collagen	-	no_errors
SDR16C6	0	genome.wustl.edu	37	8	57307803	57307803	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	57307803	57307803	G	T	SNP	SDR16C6	ENST00000444271	human	ensembl	58_37c	-1	known	missense	c.122	p.T41K	1.000	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
SHPRH	257218	genome.wustl.edu	37	6	146276440	146276440	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	146276440	146276440	G	C	SNP	SHPRH	NM_001042683.2	human	genbank	58_37c	-1	validated	missense	c.19	p.R7G	1.000	NULL	"HMMPfam_SNF2_N,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMSmart_SM00184,HMMSmart_SM00249,HMMPfam_Linker_histone,HMMSmart_SM00526,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00487,PatternScan_ZF_RING_1,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_""Winged helix"" DNA-binding domain,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_RING/U-box"	-	no_errors
SIGLEC12	89858	genome.wustl.edu	37	19	52001438	52001438	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	52001438	52001438	C	A	SNP	SIGLEC12	NM_053003.2	human	genbank	58_37c	-1	reviewed	missense	c.1239	p.W413C	0.084	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
SLC5A4	6527	genome.wustl.edu	37	22	32614516	32614516	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	22	32614516	32614516	G	A	SNP	SLC5A4	NM_014227.2	human	genbank	58_37c	-1	validated	silent	c.1965	p.H655	0.296	NULL	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
SNTG2	54221	genome.wustl.edu	37	2	1271265	1271265	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	1271265	1271265	C	T	SNP	SNTG2	NM_018968.3	human	genbank	58_37c	+1	reviewed	silent	c.1206	p.N402	0.004	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
SPNS3	201305	genome.wustl.edu	37	17	4389850	4389850	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	17	4389850	4389850	C	T	SNP	SPNS3	NM_182538.4	human	genbank	58_37c	+1	validated	silent	c.1422	p.D474	1.000	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
TAOK1	57551	genome.wustl.edu	37	17	27805320	27805320	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	17	27805320	27805320	C	G	SNP	TAOK1	NM_020791.1	human	genbank	58_37c	+1	validated	missense	c.404	p.A135G	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7577106	7577106	+	Missense_Mutation	SNP	G	G	C	rs17849781	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	17	7577106	7577106	G	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.832	p.P278A	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179396209	179396209	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	179396209	179396209	C	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.97423	p.D32475H	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179569129	179569129	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	179569129	179569129	C	G	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.26236	p.A8746P	0.139	HMMPfam_I-set	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
UNC5D	137970	genome.wustl.edu	37	8	35631900	35631900	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	35631900	35631900	C	A	SNP	UNC5D	NM_080872.2	human	genbank	58_37c	+1	validated	silent	c.2562	p.P854	1.000	HMMSmart_SM00005,superfamily_DEATH domain	PatternScan_SERPIN,HMMPfam_Death,HMMSmart_SM00005,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_ZU5,HMMSmart_SM00218,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_DEATH domain,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
WDR75	84128	genome.wustl.edu	37	2	190327230	190327230	+	Missense_Mutation	SNP	G	G	A	rs147809896	byFrequency	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	2	190327230	190327230	G	A	SNP	WDR75	NM_032168.1	human	genbank	58_37c	+1	provisional	missense	c.799	p.G267S	0.998	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
YWHAB	7529	genome.wustl.edu	37	20	43530358	43530358	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	20	43530358	43530358	C	T	SNP	YWHAB	NM_003404.3	human	genbank	58_37c	+1	reviewed	missense	c.184	p.R62C	1.000	HMMPfam_14-3-3,HMMSmart_SM00101,superfamily_14-3-3 protein	HMMPfam_14-3-3,HMMSmart_SM00101,PatternScan_1433_1,PatternScan_1433_2,superfamily_14-3-3 protein	-	no_errors
ZBTB41	360023	genome.wustl.edu	37	1	197169544	197169544	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	1	197169544	197169544	T	G	SNP	ZBTB41	NM_194314.2	human	genbank	58_37c	-1	validated	missense	c.60	p.K20N	0.998	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZBTB49	0	genome.wustl.edu	37	4	4314784	4314784	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	4	4314784	4314784	C	G	SNP	ZBTB49	NM_145291.3	human	genbank	58_37c	+1	validated	missense	c.1319	p.T440S	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZHX1	11244	genome.wustl.edu	37	8	124266845	124266845	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	8	124266845	124266845	G	A	SNP	ZHX1	NM_001017926.1	human	genbank	58_37c	-1	reviewed	missense	c.1342	p.P448S	0.595	NULL	HMMPfam_Homeobox,HMMSmart_HOX,PatternScan_ZINC_FINGER_C2H2_1,superfamily_Homeodomain_like,HMMSmart_ZnF_C2H2,PatternScan_HOMEOBOX_1	-	no_errors
ZNF192	7745	genome.wustl.edu	37	6	28120996	28120996	+	Missense_Mutation	SNP	G	G	A	rs149099230	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	6	28120996	28120996	G	A	SNP	ZNF192	NM_006298.2	human	genbank	58_37c	+1	validated	missense	c.938	p.R313Q	0.998	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF429	353088	genome.wustl.edu	37	19	21720707	21720707	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A142-01A-11D-A10Y-09	TCGA-D8-A142-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	86c9c056-e9c7-4653-a0b5-29f2b140534b	45e9f8c4-5eac-44fe-b1bd-4e9285524e60	19	21720707	21720707	G	C	SNP	ZNF429	NM_001001415.2	human	genbank	58_37c	+1	provisional	missense	c.1852	p.E618Q	1.000	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
