Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB8	0	genome.wustl.edu	37	7	150732987	150732987	+	Missense_Mutation	SNP	G	G	A	rs142475735	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	7	150732987	150732987	G	A	SNP	ABCB8	NM_007188.3	human	genbank	58_37c	+1	reviewed	missense	c.946	p.V316I	1.000	HMMPfam_ABC_membrane,superfamily_ABC_TM_1	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
ADAM29	0	genome.wustl.edu	37	4	175897708	175897708	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	4	175897708	175897708	G	A	SNP	ADAM29	NM_001130703.1	human	genbank	58_37c	+1	reviewed	silent	c.1032	p.E344	0.000	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ALDOC	0	genome.wustl.edu	37	17	26901258	26901258	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	17	26901258	26901258	A	G	SNP	ALDOC	NM_005165.2	human	genbank	58_37c	-1	reviewed	missense	c.626	p.V209A	1.000	HMMPfam_Glycolytic,superfamily_Aldolase	HMMPfam_Glycolytic,PatternScan_ALDOLASE_CLASS_I,superfamily_Aldolase	-	no_errors
CASP4	0	genome.wustl.edu	37	11	104825700	104825700	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	11	104825700	104825700	C	G	SNP	CASP4	NM_001225.3	human	genbank	58_37c	-1	reviewed	missense	c.36	p.K12N	0.009	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain	HMMPfam_CARD,HMMSmart_SM00114,superfamily_DEATH domain,HMMPfam_Peptidase_C14,HMMSmart_SM00115,PatternScan_CASPASE_HIS,PatternScan_CASPASE_CYS,superfamily_Caspase-like	-	no_errors
CEP110	0	genome.wustl.edu	37	9	123930557	123930557	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	9	123930557	123930557	G	A	SNP	CEP110	NM_007018.4	human	genbank	58_37c	+1	reviewed	missense	c.6028	p.E2010K	1.000	NULL	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
CRIM1	0	genome.wustl.edu	37	2	36583699	36583699	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	2	36583699	36583699	G	C	SNP	CRIM1	ENST00000428774	human	ensembl	58_37c	+1	known	missense	c.86	p.C29S	1.000	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region
DCAF7	0	genome.wustl.edu	37	17	61662631	61662631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	17	61662631	61662631	G	A	SNP	DCAF7	ENST00000310827	human	ensembl	58_37c	+1	known	missense	c.797	p.R266Q	1.000	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
DHX37	0	genome.wustl.edu	37	12	125448967	125448967	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	12	125448967	125448967	C	T	SNP	DHX37	NM_032656.2	human	genbank	58_37c	-1	reviewed	missense	c.2018	p.G673E	1.000	HMMPfam_Helicase_C,HMMSmart_HELICc,superfamily_SSF52540	HMMPfam_Helicase_C,HMMSmart_HELICc,PatternScan_DEAH_ATP_HELICASE,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_DEXDc,superfamily_SSF52540	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13369	13369	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	MT	13369	13369	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1033	p.S345P	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
FAM174A	0	genome.wustl.edu	37	5	99871633	99871633	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	5	99871633	99871633	C	G	SNP	FAM174A	NM_198507.1	human	genbank	58_37c	+1	provisional	silent	c.399	p.G133	1.000	HMMPfam_DUF1180	HMMPfam_DUF1180	-	no_errors
FAT1	0	genome.wustl.edu	37	4	187629455	187629455	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	4	187629455	187629455	C	T	SNP	FAT1	NM_005245.3	human	genbank	58_37c	-1	reviewed	silent	c.1527	p.P509	0.011	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
GGT1	0	genome.wustl.edu	37	22	25023893	25023893	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	22	25023893	25023893	G	A	SNP	GGT1	NM_001032364.2	human	genbank	58_37c	+1	reviewed	missense	c.1283	p.S428N	0.998	HMMPfam_G_glu_transpept	HMMPfam_G_glu_transpept,PatternScan_G_GLU_TRANSPEPTIDASE	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152186490	152186490	+	Missense_Mutation	SNP	C	C	T	rs80110809	byFrequency	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	1	152186490	152186490	C	T	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	missense	c.7615	p.G2539S	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
HSPD1	0	genome.wustl.edu	37	2	198363501	198363501	+	Silent	SNP	C	C	T	rs78187001	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	2	198363501	198363501	C	T	SNP	HSPD1	NM_002156.4	human	genbank	58_37c	-1	reviewed	silent	c.72	p.R24	0.995	NULL	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,PatternScan_CHAPERONINS_CPN60,superfamily_SSF52029,superfamily_SSF54849	-	no_errors
IFT74	0	genome.wustl.edu	37	9	26988692	26988692	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	9	26988692	26988692	C	T	SNP	IFT74	NM_001099222.1	human	genbank	58_37c	+1	validated	missense	c.491	p.T164I	1.000	NULL	NULL	-	no_errors
IREB2	0	genome.wustl.edu	37	15	78775776	78775776	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	15	78775776	78775776	G	A	SNP	IREB2	NM_004136.2	human	genbank	58_37c	+1	validated	silent	c.1413	p.K471	1.000	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain	HMMPfam_Aconitase_C,HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain,superfamily_Aconitase,PatternScan_ACONITASE_1,PatternScan_ACONITASE_2	-	no_errors
KALRN	0	genome.wustl.edu	37	3	124438238	124438238	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	3	124438238	124438238	G	A	SNP	KALRN	NM_001024660.3	human	genbank	58_37c	+1	reviewed	missense	c.8882	p.R2961H	1.000	superfamily_Protein kinase-like (PK-like)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMSmart_SM00516,superfamily_CRAL/TRIO domain,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Spectrin,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_SH3_2,HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
LGR6	0	genome.wustl.edu	37	1	202249911	202249911	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	1	202249911	202249911	A	T	SNP	LGR6	NM_001017403.1	human	genbank	58_37c	+1	reviewed	missense	c.647	p.H216L	1.000	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like	HMMPfam_7tm_1,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_Family A G protein-coupled receptor-like	-	no_errors
LINS1	0	genome.wustl.edu	37	15	101115307	101115307	+	Silent	SNP	A	A	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	15	101115307	101115307	A	T	SNP	LINS1	NM_001040614.1	human	genbank	58_37c	-1	reviewed	silent	c.516	p.A172	0.601	NULL	NULL	-	no_errors
LOC100287759	0	genome.wustl.edu	37	9	66454789	66454789	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	9	66454789	66454789	T	C	SNP	LOC100287759	XM_002342919.1	human	genbank	58_37c	-1	model	missense	c.166	p.T56A	0.047	NULL	NULL	-	no_errors
LOC100289581	0	genome.wustl.edu	37	10	135491067	135491067	+	Silent	SNP	C	C	T	rs71263919	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	10	135491067	135491067	C	T	SNP	LOC100289581	XM_002343041.1	human	genbank	58_37c	+1	model	silent	c.678	p.N226	0.984	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	-	pseudogene
LOC729057	0	genome.wustl.edu	37	22	16123524	16123524	+	RNA	SNP	A	A	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	22	16123524	16123524	A	C	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
MLL3	0	genome.wustl.edu	37	7	151843775	151843776	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	7	151843775	151843776	TT	-	DEL	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.13940_13939	p.K4647fs	0.004:0.003	HMMPfam_FYRC,HMMSmart_SM00542	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MPHOSPH8	0	genome.wustl.edu	37	13	20237220	20237220	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	13	20237220	20237220	C	T	SNP	MPHOSPH8	NM_017520.3	human	genbank	58_37c	+1	validated	missense	c.1973	p.A658V	1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Chromo,HMMSmart_SM00298,PatternScan_CHROMO_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,superfamily_Chromo domain-like	-	no_errors
MUC16	0	genome.wustl.edu	37	19	9085003	9085003	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	19	9085003	9085003	G	A	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.6812	p.T2271I	0.026	NULL	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
NEK8	0	genome.wustl.edu	37	17	27064381	27064381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	17	27064381	27064381	C	T	SNP	NEK8	NM_178170.2	human	genbank	58_37c	+1	reviewed	missense	c.676	p.R226W	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_RCC1,PatternScan_RCC1_1,PatternScan_RCC1_2,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_RCC1/BLIP-II,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
NOVA1	0	genome.wustl.edu	37	14	26939694	26939694	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	14	26939694	26939694	C	T	SNP	NOVA1	NM_006491.2	human	genbank	58_37c	-1	reviewed	silent	c.522	p.K174	0.001	NULL	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
ODF1	0	genome.wustl.edu	37	8	103573011	103573037	+	In_Frame_Del	DEL	TGCAACCCCTGCAGCCCCTGCAACCCG	TGCAACCCCTGCAGCCCCTGCAACCCG	-	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	TGCAACCCCTGCAGCCCCTGCAACCCG	TGCAACCCCTGCAGCCCCTGCAACCCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	8	103573011	103573037	TGCAACCCCTGCAGCCCCTGCAACCCG	-	DEL	ODF1	NM_024410.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.652_678	p.NPCSPCNPC219in_frame_del	0.995:0.998:0.993:0.606:0.498:0.829:0.957:0.993:0.985:0.985:0.958:0.001:0.001:0.001:0.728:0.987:0.994:0.989:0.990:0.972:0.003:0.001:0.000:0.002:0.891:0.887:0.486	NULL	superfamily_HSP20_chap	-	no_errors
OR8S1	0	genome.wustl.edu	37	12	48919779	48919779	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	12	48919779	48919779	G	A	SNP	OR8S1	NM_001005203.2	human	genbank	58_37c	+1	validated	missense	c.365	p.R122H	1.000	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHGB7	0	genome.wustl.edu	37	5	140798223	140798223	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	5	140798223	140798223	C	A	SNP	PCDHGB7	NM_018927.2	human	genbank	58_37c	+1	reviewed	missense	c.797	p.A266D	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PLK2	0	genome.wustl.edu	37	5	57750566	57750568	+	In_Frame_Del	DEL	GAT	GAT	-	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	GAT	GAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	5	57750566	57750568	GAT	-	DEL	PLK2	NM_006622.2	human	genbank	58_37c	-1	validated	in_frame_del	c.1902_1900	p.I634in_frame_del	1.000:1.000:1.000	HMMPfam_POLO_box,superfamily_SSF82615	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_POLO_box,superfamily_SSF82615	-	no_errors
POU3F4	0	genome.wustl.edu	37	X	82764246	82764246	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	X	82764246	82764246	C	T	SNP	POU3F4	NM_000307.3	human	genbank	58_37c	+1	reviewed	missense	c.914	p.A305V	1.000	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like	HMMPfam_Pou,HMMSmart_POU,PatternScan_POU_1,PatternScan_POU_2,HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,superfamily_Lambda_like_DNA,PatternScan_HOMEOBOX_1	-	no_errors
PSMD5	0	genome.wustl.edu	37	9	123593673	123593673	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	9	123593673	123593673	T	C	SNP	PSMD5	NM_005047.2	human	genbank	58_37c	-1	reviewed	missense	c.497	p.N166S	1.000	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB	superfamily_ARM-type_fold,HMMPfam_Proteasom_PSMB	-	no_errors
RNF148	0	genome.wustl.edu	37	7	122342439	122342439	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	7	122342439	122342439	C	A	SNP	RNF148	NM_198085.1	human	genbank	58_37c	-1	validated	missense	c.366	p.K122N	0.997	HMMPfam_PA,superfamily_SSF52025	HMMSmart_RING,HMMPfam_PA,HMMPfam_zf-C3HC4,superfamily_SSF52025,superfamily_SSF57850	-	no_errors
RYR2	0	genome.wustl.edu	37	1	237608772	237608772	+	Silent	SNP	C	C	G	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	1	237608772	237608772	C	G	SNP	RYR2	NM_001035.2	human	genbank	58_37c	+1	reviewed	silent	c.1242	p.R414	0.566	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
TFF2	0	genome.wustl.edu	37	21	43767728	43767728	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	21	43767728	43767728	G	A	SNP	TFF2	NM_005423.4	human	genbank	58_37c	-1	reviewed	silent	c.243	p.C81	0.632	HMMPfam_Trefoil,HMMSmart_PD,superfamily_P_trefoil	HMMPfam_Trefoil,HMMSmart_PD,superfamily_P_trefoil,PatternScan_P_TREFOIL	-	no_errors
TPP2	0	genome.wustl.edu	37	13	103301465	103301465	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	13	103301465	103301465	A	C	SNP	TPP2	NM_003291.2	human	genbank	58_37c	+1	reviewed	missense	c.2837	p.N946T	0.998	NULL	HMMPfam_Peptidase_S8,PatternScan_SUBTILASE_ASP,PatternScan_SUBTILASE_HIS,PatternScan_SUBTILASE_SER,superfamily_Pept_S8_S53	-	no_errors
TRPM4	0	genome.wustl.edu	37	19	49700060	49700061	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	19	49700060	49700061	-	T	INS	TRPM4	NM_017636.2	human	genbank	58_37c	+1	provisional	frame_shift_ins	c.2574_2575	p.Y858fs	0.967:1.000	HMMPfam_Ion_trans	HMMPfam_Ion_trans	-	no_errors
USP36	0	genome.wustl.edu	37	17	76798549	76798554	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	TTTTTC	TTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	17	76798549	76798554	TTTTTC	-	DEL	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.178:0.173:0.043:0.038:0.100:0.107	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
VCPIP1	0	genome.wustl.edu	37	8	67578573	67578573	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	8	67578573	67578573	A	C	SNP	VCPIP1	NM_025054.4	human	genbank	58_37c	-1	validated	missense	c.621	p.C207W	1.000	NULL	HMMPfam_OTU	-	no_errors
WBSCR17	0	genome.wustl.edu	37	7	71142235	71142235	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	7	71142235	71142235	G	A	SNP	WBSCR17	NM_022479.1	human	genbank	58_37c	+1	reviewed	missense	c.1444	p.G482R	1.000	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,superfamily_Ricin B-like lectins	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
WISP1	0	genome.wustl.edu	37	8	134232962	134232962	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	8	134232962	134232962	C	T	SNP	WISP1	NM_003882.2	human	genbank	58_37c	+1	reviewed	missense	c.488	p.P163L	0.993	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1	HMMPfam_IGFBP,HMMSmart_SM00121,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,PatternScan_IGFBP_N_1	-	no_errors
ZCWPW1	0	genome.wustl.edu	37	7	99998835	99998835	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	7	99998835	99998835	T	A	SNP	ZCWPW1	ENST00000360951	human	ensembl	58_37c	-1	known	missense	c.1538	p.H513L	0.000	NULL	HMMPfam_PWWP,HMMPfam_zf-CW,superfamily_SSF63748	-	no_errors
ZDHHC20	0	genome.wustl.edu	37	13	21955605	21955605	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	13	21955605	21955605	T	C	SNP	ZDHHC20	NM_153251.2	human	genbank	58_37c	-1	provisional	missense	c.1025	p.E342G	0.480	NULL	HMMPfam_zf-DHHC	-	no_errors
ZNF208	0	genome.wustl.edu	37	19	22156855	22156855	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	19	22156855	22156855	G	A	SNP	ZNF208	NM_007153.3	human	genbank	58_37c	-1	provisional	silent	c.981	p.T327	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF48695,superfamily_SSF57667	-	no_errors
ZNF609	0	genome.wustl.edu	37	15	64915230	64915230	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1JT-01A-31D-A13L-09	TCGA-D8-A1JT-10A-01D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	3be3972f-4125-44c3-94d6-0ddba2008fcf	6d5d4c16-d571-4ad1-b5d7-e8cbc3736afb	15	64915230	64915230	G	C	SNP	ZNF609	NM_015042.1	human	genbank	58_37c	+1	provisional	missense	c.952	p.V318L	1.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
