Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AADACL4	0	genome.wustl.edu	37	1	12711145	12711145	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	12711145	12711145	A	T	SNP	AADACL4	NM_001013630.1	human	genbank	58_37c	+1	provisional	missense	c.172	p.N58Y	0.011	superfamily_SSF53474	PatternScan_LIPASE_GDXG_HIS,PatternScan_LIPASE_GDXG_SER,HMMPfam_Abhydrolase_3,superfamily_SSF53474	-	no_errors
AKD1	0	genome.wustl.edu	37	6	109850199	109850201	+	In_Frame_Del	DEL	AAC	AAC	-	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	AAC	AAC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	6	109850199	109850201	AAC	-	DEL	AKD1	ENST00000355283	human	ensembl	58_37c	-1	known	in_frame_del	c.885_883	p.V295in_frame_del	0.003:0.000:0.000	NULL	HMMPfam_ADK,HMMPfam_YHS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ANKRD32	0	genome.wustl.edu	37	5	94005921	94005921	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	5	94005921	94005921	A	C	SNP	ANKRD32	NM_032290.3	human	genbank	58_37c	+1	validated	missense	c.1598	p.H533P	0.019	NULL	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
AOAH	0	genome.wustl.edu	37	7	36552787	36552788	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	7	36552787	36552788	-	G	INS	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1918_1917	p.Y639fs	0.000:0.000	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
C10orf140	0	genome.wustl.edu	37	10	21805466	21805467	+	In_Frame_Ins	INS	-	-	CCTCCT	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	10	21805466	21805467	-	CCTCCT	INS	C10orf140	NM_207371.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1286_1285	p.429in_frame_insEE	0.998:1.000	NULL	PatternScan_G_PROTEIN_RECEP_F1_1,HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain	-	no_errors
CILP	0	genome.wustl.edu	37	15	65495782	65495782	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	15	65495782	65495782	C	A	SNP	CILP	NM_003613.3	human	genbank	58_37c	-1	reviewed	nonsense	c.946	p.E316*	0.499	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Carboxypeptidase regulatory domain,HMMPfam_ig,PatternScan_HEXAPEP_TRANSFERASES,superfamily_Immunoglobulin	-	no_errors
DOCK8	0	genome.wustl.edu	37	9	317062	317062	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	9	317062	317062	G	A	SNP	DOCK8	NM_203447.3	human	genbank	58_37c	+1	reviewed	missense	c.557	p.R186H	1.000	NULL	HMMPfam_Ded_cyto	-	no_errors
ENSG00000210077	0	genome.wustl.edu	37	MT	1669	1669	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	MT	1669	1669	G	A	SNP	ENSG00000210077	ENST00000387342	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000210100	0	genome.wustl.edu	37	MT	4309	4309	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	MT	4309	4309	G	A	SNP	ENSG00000210100	ENST00000387365	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000210164	0	genome.wustl.edu	37	MT	10057	10057	+	RNA	SNP	T	T	C	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	MT	10057	10057	T	C	SNP	ENSG00000210164	ENST00000387429	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000227717	0	genome.wustl.edu	37	15	28798897	28798897	+	Silent	SNP	C	C	T	rs62008494	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	15	28798897	28798897	C	T	SNP	ENSG00000227717	ENST00000440738	human	ensembl	58_37c	+1	known	silent	c.129	p.A43	0.759	NULL	NULL	-	no_errors
ENSG00000233000	0	genome.wustl.edu	37	4	49647180	49647180	+	Silent	SNP	C	C	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	4	49647180	49647180	C	A	SNP	ENSG00000233000	ENST00000413383	human	ensembl	58_37c	+1	known	silent	c.111	p.P37	0.000	NULL	NULL	-	no_stop_codon
ENSG00000245295	0	genome.wustl.edu	37	16	50701956	50701957	+	RNA	INS	-	-	G	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	16	50701956	50701957	-	G	INS	ENSG00000245295	ENST00000499937	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
ENSG00000251402	0	genome.wustl.edu	37	8	12272925	12272925	+	RNA	SNP	G	G	C	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	8	12272925	12272925	G	C	SNP	ENSG00000251402	ENST00000511144	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.010	-	-	-	no_errors
EPC2	0	genome.wustl.edu	37	2	149501311	149501311	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	149501311	149501311	G	A	SNP	EPC2	NM_015630.3	human	genbank	58_37c	+1	validated	missense	c.434	p.R145K	1.000	HMMPfam_EPL1	HMMPfam_E_Pc_C,HMMPfam_EPL1	-	no_errors
FBXL14	0	genome.wustl.edu	37	12	1702880	1702880	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	12	1702880	1702880	G	A	SNP	FBXL14	NM_152441.2	human	genbank	58_37c	-1	validated	missense	c.353	p.S118F	1.000	superfamily_SSF52047	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF52047,superfamily_SSF81383	-	no_errors
FCGBP	0	genome.wustl.edu	37	19	40392802	40392802	+	Missense_Mutation	SNP	C	C	T	rs149844303	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	19	40392802	40392802	C	T	SNP	FCGBP	NM_003890.2	human	genbank	58_37c	-1	validated	missense	c.7702	p.A2568T	0.999	HMMPfam_VWD,HMMSmart_VWD	HMMSmart_VWC,HMMPfam_VWD,HMMSmart_VWD,superfamily_Cysrich_TIL,HMMPfam_TIL_assoc,HMMSmart_FOLN,HMMPfam_C8,HMMPfam_TIL	-	no_errors
FOXD4L3	0	genome.wustl.edu	37	9	70917883	70917883	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	9	70917883	70917883	G	A	SNP	FOXD4L3	NM_199135.4	human	genbank	58_37c	+1	validated	missense	c.16	p.A6T	0.032	NULL	HMMPfam_Fork_head,HMMSmart_FH,PatternScan_FORK_HEAD_1,PatternScan_FORK_HEAD_2,superfamily_SSF46785	-	no_errors
FZD9	0	genome.wustl.edu	37	7	72849875	72849875	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	7	72849875	72849875	A	T	SNP	FZD9	NM_003508.2	human	genbank	58_37c	+1	reviewed	missense	c.1538	p.K513I	1.000	HMMPfam_Frizzled	superfamily_Frizzled_Cys-rich,HMMPfam_Frizzled,HMMPfam_Fz,HMMSmart_FRI	-	no_errors
GLI4	0	genome.wustl.edu	37	8	144358528	144358528	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	8	144358528	144358528	C	G	SNP	GLI4	NM_138465.3	human	genbank	58_37c	+1	validated	missense	c.685	p.H229D	0.939	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
HOXA1	0	genome.wustl.edu	37	7	27135314	27135316	+	In_Frame_Del	DEL	CGA	CGA	-	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	CGA	CGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	7	27135314	27135316	CGA	-	DEL	HOXA1	NM_005522.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.218_216	p.R73in_frame_del	0.952:0.978:0.985	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
HRNR	0	genome.wustl.edu	37	1	152189038	152189038	+	Silent	SNP	A	A	G	rs145118416	byFrequency	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	152189038	152189038	A	G	SNP	HRNR	NM_001009931.1	human	genbank	58_37c	-1	validated	silent	c.5067	p.Y1689	0.000	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_SVS_QK,superfamily_SSF47473	-	no_errors
IKBKAP	0	genome.wustl.edu	37	9	111673326	111673326	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	9	111673326	111673326	G	C	SNP	IKBKAP	NM_003640.3	human	genbank	58_37c	-1	reviewed	missense	c.1324	p.L442V	0.998	HMMPfam_IKI3	HMMPfam_IKI3,superfamily_Amine_DH_B_like	-	no_errors
KIAA1683	0	genome.wustl.edu	37	19	18375974	18375974	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	19	18375974	18375974	G	T	SNP	KIAA1683	NM_001145304.1	human	genbank	58_37c	-1	validated	missense	c.2376	p.S792R	0.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
LOC100132247	0	genome.wustl.edu	37	16	22545865	22545865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	16	22545865	22545865	G	C	SNP	LOC100132247	NM_001135865.1	human	genbank	58_37c	+1	validated	missense	c.1561	p.A521P	0.003	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
LOC100288109	0	genome.wustl.edu	37	9	66458237	66458237	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	9	66458237	66458237	C	A	SNP	LOC100288109	XM_002342922.1	human	genbank	58_37c	-1	model	missense	c.397	p.A133S	0.024	NULL	NULL	-	no_errors
LOC643677	0	genome.wustl.edu	37	13	103397200	103397200	+	Silent	SNP	G	G	C	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	13	103397200	103397200	G	C	SNP	LOC643677	XM_002344085.1	human	genbank	58_37c	-1	model	silent	c.5634	p.V1878	0.000	NULL	NULL	-	no_errors
MAST1	0	genome.wustl.edu	37	19	12954345	12954345	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	19	12954345	12954345	C	T	SNP	MAST1	NM_014975.2	human	genbank	58_37c	+1	validated	missense	c.251	p.A84V	1.000	HMMPfam_DUF1908	HMMSmart_S_TK_X,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_DUF1908,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C	-	no_errors
MIR1324	0	genome.wustl.edu	37	3	75679963	75679963	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	3	75679963	75679963	C	T	SNP	MIR1324	ENST00000408868	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.941	-	-	-	no_errors
MT-CO2	0	genome.wustl.edu	37	MT	7979	7979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	MT	7979	7979	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	58_37c	+1	known	missense	c.394	p.D132N	NULL	HMMPfam_COX2,superfamily_Cupredoxins	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	mismatch_between_exon_seq_and_reference
MYBPC1	0	genome.wustl.edu	37	12	102053566	102053566	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	12	102053566	102053566	C	T	SNP	MYBPC1	NM_002465.2	human	genbank	58_37c	+1	validated	silent	c.1884	p.N628	0.991	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16902844	16902844	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	16902844	16902844	G	T	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.2037	p.D679E	0.001	NULL	HMMPfam_DUF1220	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16912133	16912133	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	16912133	16912133	G	A	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.839	p.S280F	0.004	NULL	HMMPfam_DUF1220	-	no_errors
OR4F4	0	genome.wustl.edu	37	15	102462857	102462857	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	15	102462857	102462857	C	T	SNP	OR4F4	NM_001004195.2	human	genbank	58_37c	-1	provisional	missense	c.406	p.G136S	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OTOF	0	genome.wustl.edu	37	2	26707384	26707384	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	26707384	26707384	G	A	SNP	OTOF	NM_194248.2	human	genbank	58_37c	-1	reviewed	missense	c.1163	p.T388M	0.997	HMMPfam_FerI	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerB,HMMPfam_FerI	-	no_errors
PCNXL2	0	genome.wustl.edu	37	1	233344320	233344320	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	233344320	233344320	T	C	SNP	PCNXL2	NM_014801.3	human	genbank	58_37c	-1	provisional	missense	c.2807	p.Y936C	1.000	NULL	HMMPfam_Pecanex_C,PatternScan_DNAJ_1	-	no_errors
PNMA5	0	genome.wustl.edu	37	X	152159057	152159057	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	X	152159057	152159057	G	A	SNP	PNMA5	NM_001103150.1	human	genbank	58_37c	-1	validated	silent	c.1086	p.V362	0.000	NULL	NULL	-	no_errors
SALL4	0	genome.wustl.edu	37	20	50408674	50408674	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	20	50408674	50408674	G	A	SNP	SALL4	NM_020436.3	human	genbank	58_37c	-1	reviewed	silent	c.348	p.S116	0.050	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
SLC27A4	0	genome.wustl.edu	37	9	131115797	131115797	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	9	131115797	131115797	G	A	SNP	SLC27A4	NM_005094.3	human	genbank	58_37c	+1	reviewed	missense	c.1301	p.G434D	0.999	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_LIPOCALIN,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
SLC9A2	0	genome.wustl.edu	37	2	103311569	103311569	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	103311569	103311569	A	G	SNP	SLC9A2	NM_003048.3	human	genbank	58_37c	+1	validated	missense	c.1583	p.D528G	1.000	NULL	HMMPfam_Na_H_Exchanger	-	no_errors
STK11IP	0	genome.wustl.edu	37	2	220476737	220476737	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	220476737	220476737	A	T	SNP	STK11IP	ENST00000456909	human	ensembl	58_37c	+1	known	missense	c.2396	p.E799V	0.977	NULL	HMMPfam_LRR_1,superfamily_Outer arm dynein light chain 1	-	no_errors
TMCO4	0	genome.wustl.edu	37	1	20027295	20027295	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	1	20027295	20027295	C	T	SNP	TMCO4	NM_181719.4	human	genbank	58_37c	-1	validated	missense	c.1348	p.V450M	1.000	HMMPfam_DUF726	HMMPfam_DUF726	-	no_errors
USP34	0	genome.wustl.edu	37	2	61468772	61468772	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	2	61468772	61468772	G	A	SNP	USP34	NM_014709.3	human	genbank	58_37c	-1	validated	silent	c.6700	p.L2234	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
USP9X	0	genome.wustl.edu	37	X	41025387	41025387	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	X	41025387	41025387	C	T	SNP	USP9X	NM_001039590.2	human	genbank	58_37c	+1	reviewed	nonsense	c.2248	p.R750*	1.000	NULL	HMMPfam_UCH,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
ZNF286B	0	genome.wustl.edu	37	17	18565506	18565506	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1X7-01A-11D-A14K-09	TCGA-D8-A1X7-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	7acb4232-db95-4889-942e-f1be897b4f2a	94d5eab1-0c42-45c7-8bb4-a3eccefd205b	17	18565506	18565506	G	C	SNP	ZNF286B	NM_001145045.1	human	genbank	58_37c	-1	validated	missense	c.1313	p.P438R	1.000	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
