Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ARV1	0	genome.wustl.edu	37	1	231131566	231131567	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	1	231131566	231131567	-	A	INS	ARV1	NM_022786.1	human	genbank	58_37c	+1	provisional	frame_shift_ins	c.509_510	p.K174fs	0.000:0.000	HMMPfam_Arv1	HMMPfam_Arv1	-	no_errors
B4GALNT2	0	genome.wustl.edu	37	17	47246211	47246211	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	17	47246211	47246211	C	T	SNP	B4GALNT2	NM_153446.2	human	genbank	58_37c	+1	validated	nonsense	c.1444	p.R482*	0.204	NULL	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
BPTF	0	genome.wustl.edu	37	17	65822267	65822269	+	In_Frame_Del	DEL	GAG	GAG	-	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	17	65822267	65822269	GAG	-	DEL	BPTF	NM_182641.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.427_429	p.E146in_frame_del	1.000:1.000:1.000	HMMPfam_FYDLN_acid	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_PHD,HMMPfam_DDT,superfamily_FYVE_PHD_ZnF,HMMPfam_FYDLN_acid,PatternScan_EGF_2,PatternScan_BROMODOMAIN_1,HMMSmart_DDT,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
CDC14C	0	genome.wustl.edu	37	7	48964317	48964317	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	7	48964317	48964317	G	A	SNP	CDC14C	NR_003595.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.002	-	-	-	pseudogene
CDC5L	0	genome.wustl.edu	37	6	44413391	44413391	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	6	44413391	44413391	G	C	SNP	CDC5L	NM_001253.2	human	genbank	58_37c	+1	reviewed	splice_site	c.2092-1	e15-1	1.000	-	-	-	no_errors
COL4A6	0	genome.wustl.edu	37	X	107402723	107402723	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	X	107402723	107402723	C	A	SNP	COL4A6	NM_001847.2	human	genbank	58_37c	-1	reviewed	missense	c.4784	p.R1595L	1.000	HMMPfam_C4,HMMSmart_SM00111,superfamily_C-type lectin-like	HMMPfam_C4,HMMSmart_SM00111,HMMPfam_Collagen,superfamily_C-type lectin-like	-	no_errors
DENND5B	0	genome.wustl.edu	37	12	31613237	31613237	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	12	31613237	31613237	G	C	SNP	DENND5B	NM_144973.3	human	genbank	58_37c	-1	validated	missense	c.983	p.P328R	1.000	HMMPfam_DENN,HMMSmart_SM00799	HMMPfam_PLAT,HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_RUN,HMMSmart_SM00593,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2456	2457	+	RNA	INS	-	-	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	MT	2456	2457	-	A	INS	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000210082	0	genome.wustl.edu	37	MT	2702	2702	+	RNA	SNP	G	G	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	MT	2702	2702	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	58_37c	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors
ENSG00000244932	0	genome.wustl.edu	37	3	129108161	129108161	+	Splice_Site	SNP	G	G	A	rs58915955	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	3	129108161	129108161	G	A	SNP	ENSG00000244932	ENST00000499853	human	ensembl	58_37c	+1	known	splice_site	c.NULL	NULL	1.000	-	-	-	no_coding_region:pseudogene
FRY	0	genome.wustl.edu	37	13	32753825	32753825	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	13	32753825	32753825	C	T	SNP	FRY	NM_023037.2	human	genbank	58_37c	+1	validated	missense	c.2885	p.P962L	1.000	NULL	PatternScan_GHMP_KINASES_ATP	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8111558	8111559	+	Frame_Shift_Ins	INS	-	-	AATA	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	10	8111558	8111559	-	AATA	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1047_1048	p.I350fs	1.000:1.000	HMMPfam_GATA,HMMSmart_SM00401,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GNLY	0	genome.wustl.edu	37	2	85923124	85923124	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	2	85923124	85923124	G	T	SNP	GNLY	NM_006433.3	human	genbank	58_37c	+1	reviewed	missense	c.200	p.R67M	0.000	HMMSmart_SM00741	HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin	-	no_errors
HGS	0	genome.wustl.edu	37	17	79662012	79662012	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	17	79662012	79662012	G	A	SNP	HGS	NM_004712.3	human	genbank	58_37c	+1	provisional	missense	c.1034	p.S345N	1.000	NULL	HMMPfam_FYVE,HMMSmart_SM00064,HMMPfam_VHS,HMMPfam_UIM,superfamily_ENTH/VHS domain,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00288	-	no_errors
IFI44	0	genome.wustl.edu	37	1	79120883	79120883	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	1	79120883	79120883	A	G	SNP	IFI44	NM_006417.4	human	genbank	58_37c	+1	validated	missense	c.679	p.I227V	0.000	superfamily_SSF52540	superfamily_SSF52540	-	no_errors
LOC100134822	0	genome.wustl.edu	37	7	19947	19947	+	RNA	SNP	C	C	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	7	19947	19947	C	T	SNP	LOC100134822	XR_038775.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.002	-	-	-	no_errors
LRRC61	0	genome.wustl.edu	37	7	150034402	150034402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	7	150034402	150034402	G	A	SNP	LRRC61	NM_001142928.1	human	genbank	58_37c	+1	validated	missense	c.452	p.R151Q	0.002	superfamily_SSF52058	HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195511486	195511486	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	3	195511486	195511486	G	T	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.6965	p.P2322H	0.777	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NBAS	0	genome.wustl.edu	37	2	15651439	15651439	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	2	15651439	15651439	A	T	SNP	NBAS	NM_015909.2	human	genbank	58_37c	-1	validated	missense	c.782	p.V261E	0.946	superfamily_WD40 repeat-like	superfamily_WD40 repeat-like,HMMPfam_Sec39,PatternScan_RIBOSOMAL_S14	-	no_errors
NR1H2	0	genome.wustl.edu	37	19	50881822	50881823	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	19	50881822	50881823	-	CAG	INS	NR1H2	NM_007121.4	human	genbank	58_37c	+1	validated	in_frame_ins	c.516_517	p.175in_frame_insQ	0.999:1.000	superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
OGDH	0	genome.wustl.edu	37	7	44713499	44713499	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	7	44713499	44713499	G	A	SNP	OGDH	NM_002541.3	human	genbank	58_37c	+1	reviewed	silent	c.747	p.E249	1.000	superfamily_SSF52518	HMMPfam_E1_dh,HMMPfam_Transket_pyr,superfamily_SSF52518	-	no_errors
OPRM1	0	genome.wustl.edu	37	6	154412457	154412457	+	Silent	SNP	T	T	C	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	6	154412457	154412457	T	C	SNP	OPRM1	NM_001145279.1	human	genbank	58_37c	+1	reviewed	silent	c.1293	p.Y431	0.988	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR6C3	0	genome.wustl.edu	37	12	55725992	55725992	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	12	55725992	55725992	G	A	SNP	OR6C3	NM_054104.1	human	genbank	58_37c	+1	provisional	missense	c.508	p.V170I	0.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178916944	178916946	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	AAG	AAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	3	178916944	178916946	AAG	-	DEL	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.331_333	p.K111in_frame_del	1.000:1.000:1.000	superfamily_SSF54236	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PURG	0	genome.wustl.edu	37	8	30890012	30890012	+	Missense_Mutation	SNP	C	C	T	rs141421913	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	8	30890012	30890012	C	T	SNP	PURG	NM_013357.2	human	genbank	58_37c	-1	reviewed	missense	c.287	p.R96Q	1.000	HMMPfam_PurA,HMMSmart_SM00712	HMMPfam_PurA,HMMSmart_SM00712	-	no_errors
RYR3	0	genome.wustl.edu	37	15	34064135	34064135	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	15	34064135	34064135	C	A	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	nonsense	c.8831	p.S2944*	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
S100Z	0	genome.wustl.edu	37	5	76173644	76173644	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	5	76173644	76173644	A	G	SNP	S100Z	NM_130772.3	human	genbank	58_37c	+1	validated	missense	c.287	p.K96R	1.000	superfamily_EF-hand	PatternScan_S100_CABP,HMMSmart_SM00054,HMMPfam_S_100,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
SEMA6A	0	genome.wustl.edu	37	5	115822497	115822497	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	5	115822497	115822497	G	A	SNP	SEMA6A	NM_020796.3	human	genbank	58_37c	-1	validated	missense	c.910	p.R304C	0.997	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00423,superfamily_Plexin repeat	-	no_errors
TACC2	0	genome.wustl.edu	37	10	123954680	123954680	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	10	123954680	123954680	C	T	SNP	TACC2	NM_206862.2	human	genbank	58_37c	+1	reviewed	missense	c.5960	p.P1987L	0.835	NULL	HMMPfam_TACC	-	no_errors
TPMT	0	genome.wustl.edu	37	6	18132371	18132371	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	6	18132371	18132371	C	T	SNP	TPMT	NM_000367.2	human	genbank	58_37c	-1	reviewed	silent	c.618	p.R206	0.001	HMMPfam_TPMT,superfamily_SSF53335	HMMPfam_TPMT,superfamily_SSF53335	-	no_errors
TTC22	0	genome.wustl.edu	37	1	55251674	55251674	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A27K-01A-11D-A16D-09	TCGA-D8-A27K-10A-01D-A16D-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	09fa0bc7-acb3-45b0-b687-977869c31d12	a25f38d9-48a6-4b15-a83b-d1a963324e96	1	55251674	55251674	C	T	SNP	TTC22	ENST00000448308	human	ensembl	58_37c	-1	known	missense	c.341	p.R114H	0.682	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
