Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM19	8728	genome.wustl.edu	37	5	156945842	156945842	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	5	156945842	156945842	C	G	SNP	ADAM19	NM_033274.2	human	genbank	58_37c	-1	reviewed	missense	c.655	p.D219H	1.000	"HMMPfam_Reprolysin,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_2,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ANO2	57101	genome.wustl.edu	37	12	5936961	5936961	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	12	5936961	5936961	G	A	SNP	ANO2	NM_020373.2	human	genbank	58_37c	-1	validated	missense	c.854	p.A285V	0.097	NULL	HMMPfam_DUF590	-	no_errors
APLNR	187	genome.wustl.edu	37	11	57003857	57003857	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	11	57003857	57003857	C	T	SNP	APLNR	NM_005161.4	human	genbank	58_37c	-1	reviewed	missense	c.622	p.V208M	0.013	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
BCLAF1	9774	genome.wustl.edu	37	6	136599544	136599544	+	Nonsense_Mutation	SNP	G	G	A	rs140155621	byFrequency	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	6	136599544	136599544	G	A	SNP	BCLAF1	NM_014739.2	human	genbank	58_37c	-1	reviewed	nonsense	c.475	p.R159*	1.000	NULL	NULL	-	no_errors
CD34	947	genome.wustl.edu	37	1	208062812	208062812	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	1	208062812	208062812	G	T	SNP	CD34	NM_001025109.1	human	genbank	58_37c	-1	validated	missense	c.752	p.T251K	0.829	HMMPfam_CD34_antigen	HMMPfam_CD34_antigen	-	no_errors
CEP78	84131	genome.wustl.edu	37	9	80856675	80856675	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	9	80856675	80856675	T	C	SNP	CEP78	NM_001098802.1	human	genbank	58_37c	+1	validated	missense	c.563	p.L188P	1.000	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
CTCF	10664	genome.wustl.edu	37	16	67644796	67644796	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	16	67644796	67644796	G	T	SNP	CTCF	NM_006565.2	human	genbank	58_37c	+1	reviewed	nonsense	c.61	p.E21*	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
DAK	26007	genome.wustl.edu	37	11	61105416	61105416	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	11	61105416	61105416	T	A	SNP	DAK	NM_015533.3	human	genbank	58_37c	+1	reviewed	missense	c.7	p.S3T	0.974	NULL	HMMPfam_Dak1,HMMPfam_Dak2,superfamily_Citrobacter dihydroxyacetone kinase extra ATP-binding domain,superfamily_DAK1/DegV-like	-	no_errors
DSP	1832	genome.wustl.edu	37	6	7583485	7583485	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	6	7583485	7583485	G	T	SNP	DSP	NM_004415.2	human	genbank	58_37c	+1	reviewed	missense	c.5990	p.G1997V	1.000	superfamily_Plakin repeat	HMMPfam_Plectin,HMMSmart_SM00250,superfamily_Prefoldin,superfamily_tRNA-binding arm,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_Plakin repeat	-	no_errors
ENSG00000245089	0	genome.wustl.edu	37	2	37502892	37502892	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	2	37502892	37502892	A	C	SNP	PRKD3	NM_005813.3	human	genbank	58_37c	-1	reviewed	intronic	c.1374+18	e9+18	0.020	-	-	-	no_errors
FREM2	341640	genome.wustl.edu	37	13	39266455	39266455	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	13	39266455	39266455	C	T	SNP	FREM2	NM_207361.4	human	genbank	58_37c	+1	reviewed	silent	c.4974	p.I1658	0.997	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
HDLBP	3069	genome.wustl.edu	37	2	242202328	242202328	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	2	242202328	242202328	G	A	SNP	HDLBP	NM_005336.3	human	genbank	58_37c	-1	validated	missense	c.248	p.P83L	1.000	NULL	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791	-	no_errors
HSF1	3297	genome.wustl.edu	37	8	145535048	145535048	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	8	145535048	145535048	C	G	SNP	HSF1	NM_005526.2	human	genbank	58_37c	+1	reviewed	missense	c.606	p.I202M	1.000	HMMPfam_HSF_DNA-bind	"HMMPfam_HSF_DNA-bind,HMMSmart_SM00415,PatternScan_HSF_DOMAIN,HMMPfam_Vert_HS_TF,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
MAP2K4	6416	genome.wustl.edu	37	17	11984840	11984856	+	Frame_Shift_Del	DEL	CAGTTAAAGTAGGTGAT	CAGTTAAAGTAGGTGAT	-	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	CAGTTAAAGTAGGTGAT	CAGTTAAAGTAGGTGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	17	11984840	11984856	CAGTTAAAGTAGGTGAT	-	DEL	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.386_393	p.A129fs	1.000:1.000:1.000:1.000:0.999:1.000:1.000:1.000	HMMSmart_S_TKc,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56168483	56168483	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	5	56168483	56168483	G	-	DEL	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.1439	p.R480fs	1.000	HMMSmart_RING,superfamily_SSF57850	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
NCOR1	9611	genome.wustl.edu	37	17	16068342	16068352	+	Frame_Shift_Del	DEL	CGATCTACACG	CGATCTACACG	-	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	CGATCTACACG	CGATCTACACG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	17	16068342	16068352	CGATCTACACG	-	DEL	NCOR1	NM_006311.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.569_559	p.V188fs	1.000:1.000:1.000:1.000:1.000:0.956:1.000:1.000:1.000:1.000:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	A	A	rs121913273	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
RGS14	10636	genome.wustl.edu	37	5	176795135	176795135	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	5	176795135	176795135	G	T	SNP	RGS14	ENST00000425155	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*176795135	NULL	0.002	-	-	-	no_coding_region
SGK269	79834	genome.wustl.edu	37	15	77406833	77406833	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	15	77406833	77406833	G	A	SNP	SGK269	NM_024776.2	human	genbank	58_37c	-1	validated	missense	c.4906	p.R1636W	0.882	superfamily_Kinase_like	PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
TCEB3	6924	genome.wustl.edu	37	1	24078169	24078170	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	1	24078169	24078170	-	C	INS	TCEB3	NM_003198.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1152_1153	p.K385fs	0.000:0.464	NULL	HMMSmart_SM00509,HMMPfam_Elongin_A,HMMPfam_TFIIS,superfamily_Conserved domain common to transcription factors TFIIS elongin A CRSP70	-	no_errors
TRIM71	131405	genome.wustl.edu	37	3	32933232	32933232	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	3	32933232	32933232	G	A	SNP	TRIM71	NM_001039111.1	human	genbank	58_37c	+1	provisional	missense	c.2536	p.G846S	1.000	HMMPfam_NHL,superfamily_SSF101898	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMPfam_NHL,HMMSmart_IG_FLMN,HMMSmart_RING,superfamily_Ig_E-set,HMMPfam_Filamin,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF101898	-	no_errors
ZNF215	7762	genome.wustl.edu	37	11	6964815	6964815	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A156-01A-11D-A12B-09	TCGA-E2-A156-10A-01D-A12B-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	26003dce-0fc6-4538-a392-c80e1ebaa1e4	dd7e44af-58e2-43a5-af9c-29a48df02235	11	6964815	6964815	G	T	SNP	ZNF215	NM_013250.2	human	genbank	58_37c	+1	validated	nonsense	c.655	p.E219*	0.009	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
