Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCA10	0	genome.wustl.edu	37	17	67212357	67212357	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	67212357	67212357	C	A	SNP	ABCA10	NM_080282.3	human	genbank	58_37c	-1	reviewed	splice_site	c.672+1	e5+1	1.000	-	-	-	no_errors
ARID1A	0	genome.wustl.edu	37	1	27106363	27106363	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	27106363	27106363	T	C	SNP	ARID1A	NM_006015.4	human	genbank	58_37c	+1	reviewed	missense	c.5974	p.S1992P	1.000	NULL	HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like	-	no_errors
BACH2	0	genome.wustl.edu	37	6	90660252	90660252	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	90660252	90660252	A	T	SNP	BACH2	NM_021813.2	human	genbank	58_37c	-1	validated	missense	c.1573	p.S525T	1.000	NULL	HMMSmart_BTB,HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,superfamily_BTB/POZ_fold,HMMPfam_bZIP_1,HMMPfam_BTB	-	no_errors
BTBD16	0	genome.wustl.edu	37	10	124097568	124097569	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	124097568	124097569	-	T	INS	BTBD16	NM_144587.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.1489_1490	p.S498fs	0.980:0.847	NULL	superfamily_POZ domain,HMMPfam_BTB	-	no_errors
C17orf50	0	genome.wustl.edu	37	17	34091079	34091079	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	34091079	34091079	G	T	SNP	C17orf50	NM_145272.3	human	genbank	58_37c	+1	validated	missense	c.67	p.A23S	0.020	NULL	NULL	-	no_errors
CCBL2	0	genome.wustl.edu	37	1	89434456	89434456	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	89434456	89434456	T	C	SNP	CCBL2	ENST00000260508	human	ensembl	58_37c	-1	known	missense	c.200	p.N67S	1.000	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases	-	no_errors
CEACAM20	0	genome.wustl.edu	37	19	45024705	45024705	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	19	45024705	45024705	G	A	SNP	CEACAM20	NM_001102600.1	human	genbank	58_37c	-1	validated	missense	c.833	p.T278I	0.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	pseudogene
CENPK	0	genome.wustl.edu	37	5	64824380	64824380	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	5	64824380	64824380	T	A	SNP	CENPK	NM_022145.3	human	genbank	58_37c	-1	validated	missense	c.496	p.M166L	0.126	NULL	NULL	-	no_errors
COL4A5	0	genome.wustl.edu	37	X	107834827	107834828	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	X	107834827	107834828	-	A	INS	COL4A5	NM_033380.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1376_1377	p.G460fs	0.981:0.853	HMMPfam_Collagen	HMMPfam_C4,HMMSmart_C4,HMMPfam_Collagen,superfamily_C-type_lectin_fold	-	no_errors
DIAPH1	0	genome.wustl.edu	37	5	140960365	140960365	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	5	140960365	140960365	A	C	SNP	DIAPH1	NM_005219.4	human	genbank	58_37c	-1	reviewed	missense	c.770	p.I257S	1.000	HMMPfam_Drf_GBD	HMMSmart_SM00498,HMMPfam_Drf_FH1,HMMPfam_Drf_DAD,HMMPfam_Drf_FH3,HMMPfam_Drf_GBD,HMMPfam_FH2,superfamily_Formin homology 2 domain (FH2 domain)	-	no_errors
DIP2C	0	genome.wustl.edu	37	10	329357	329357	+	Silent	SNP	G	G	A	rs145443667	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	329357	329357	G	A	SNP	DIP2C	NM_014974.2	human	genbank	58_37c	-1	reviewed	silent	c.4149	p.S1383	0.991	HMMPfam_AMP-binding,superfamily_SSF56801	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,PatternScan_AMP_BINDING,superfamily_SSF56801	-	no_errors
DLGAP2	0	genome.wustl.edu	37	8	1497301	1497301	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	8	1497301	1497301	C	T	SNP	DLGAP2	NM_004745.3	human	genbank	58_37c	+1	reviewed	missense	c.442	p.R148W	0.982	NULL	HMMPfam_GKAP	-	no_errors
DNA2	0	genome.wustl.edu	37	10	70182350	70182350	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	70182350	70182350	A	C	SNP	DNA2	NM_001080449.1	human	genbank	58_37c	-1	provisional	missense	c.2672	p.M891R	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Dna2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAH9	0	genome.wustl.edu	37	17	11572851	11572851	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	11572851	11572851	C	T	SNP	DNAH9	NM_001372.3	human	genbank	58_37c	+1	reviewed	silent	c.3093	p.Y1031	0.854	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,PatternScan_CPSASE_2,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,superfamily_Spectrin repeat,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DYM	0	genome.wustl.edu	37	18	46808427	46808427	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	18	46808427	46808427	C	T	SNP	DYM	NM_017653.3	human	genbank	58_37c	-1	reviewed	silent	c.1065	p.L355	0.996	HMMPfam_Dymeclin	HMMPfam_Dymeclin	-	no_errors
EBF3	0	genome.wustl.edu	37	10	131640515	131640515	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	131640515	131640515	A	T	SNP	EBF3	NM_001005463.1	human	genbank	58_37c	-1	validated	missense	c.1210	p.Y404N	1.000	NULL	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains,PatternScan_COE	-	no_errors
EML6	0	genome.wustl.edu	37	2	55144045	55144045	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	2	55144045	55144045	C	T	SNP	EML6	NM_001039753.2	human	genbank	58_37c	+1	validated	silent	c.3648	p.F1216	0.996	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMPfam_HELP,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000119660	0	genome.wustl.edu	37	14	75758819	75758819	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	14	75758819	75758819	C	T	SNP	ENSG00000119660	ENST00000238638	human	ensembl	58_37c	-1	known	missense	c.392	p.R131Q	0.000	NULL	NULL	-	no_errors
ENSG00000246741	0	genome.wustl.edu	37	15	40849194	40849195	+	RNA	INS	-	-	AA	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	15	40849194	40849195	-	AA	INS	ENSG00000246741	ENST00000501408	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.009:0.008	-	-	-	no_errors
ENSG00000247165	0	genome.wustl.edu	37	19	6190810	6190811	+	RNA	DEL	AT	AT	-	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	AT	AT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	19	6190810	6190811	AT	-	DEL	ENSG00000247165	ENST00000502114	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000:0.000	-	-	-	no_errors
ENSG00000247499	0	genome.wustl.edu	37	10	70546195	70546199	+	RNA	DEL	TATCT	TATCT	-	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	TATCT	TATCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	70546195	70546199	TATCT	-	DEL	ENSG00000247499	ENST00000501160	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000:0.000:0.001:0.000:0.001	-	-	-	no_errors
FASN	0	genome.wustl.edu	37	17	80046886	80046891	+	In_Frame_Del	DEL	GCTCAG	GCTCAG	-	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	GCTCAG	GCTCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	80046886	80046891	GCTCAG	-	DEL	FASN	NM_004104.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.2263_2258	p.PE753in_frame_del	0.865:0.870:0.991:0.991:0.126:0.996	HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like	HMMPfam_Thioesterase,HMMPfam_adh_short,PatternScan_PHOSPHOPANTETHEINE,HMMPfam_PP-binding,superfamily_ACP-like,superfamily_GroES-like,HMMPfam_ADH_zinc_N,HMMPfam_Methyltransf_12,HMMPfam_ketoacyl-synt,HMMPfam_Ketoacyl-synt_C,HMMPfam_Acyl_transf_1,superfamily_FabD/lysophospholipase-like,superfamily_Probable ACP-binding domain of malonyl-CoA ACP transacylase,superfamily_Thiolase-like,superfamily_NAD(P)-binding Rossmann-fold domains,PatternScan_B_KETOACYL_SYNTHASE,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_alpha/beta-Hydrolases	-	no_errors
FRK	0	genome.wustl.edu	37	6	116381284	116381284	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	116381284	116381284	C	G	SNP	FRK	NM_002031.2	human	genbank	58_37c	-1	reviewed	missense	c.191	p.R64P	0.001	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF55550	-	no_errors
GOLGA6L6	0	genome.wustl.edu	37	15	20739675	20739675	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	15	20739675	20739675	C	T	SNP	GOLGA6L6	NM_001145004.1	human	genbank	58_37c	-1	inferred	missense	c.2075	p.R692Q	0.716	NULL	NULL	-	no_errors
GPR110	0	genome.wustl.edu	37	6	46975029	46975029	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	46975029	46975029	T	C	SNP	GPR110	NM_153840.2	human	genbank	58_37c	-1	validated	silent	c.2493	p.G831	0.002	HMMPfam_7tm_2	HMMPfam_SEA,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,superfamily_SEA domain	-	no_errors
GPR111	0	genome.wustl.edu	37	6	47646834	47646834	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	47646834	47646834	C	G	SNP	GPR111	NM_153839.6	human	genbank	58_37c	+1	validated	missense	c.231	p.D77E	0.740	NULL	HMMPfam_GPS,HMMPfam_7tm_2	-	no_errors
GREB1L	0	genome.wustl.edu	37	18	19031101	19031101	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	18	19031101	19031101	C	T	SNP	GREB1L	NM_001142966.1	human	genbank	58_37c	+1	provisional	missense	c.1838	p.T613I	1.000	NULL	PatternScan_ASP_PROTEASE	-	no_errors
GRIN3A	0	genome.wustl.edu	37	9	104433299	104433299	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	9	104433299	104433299	G	A	SNP	GRIN3A	NM_133445.2	human	genbank	58_37c	-1	reviewed	silent	c.1395	p.I465	1.000	superfamily_SSF53822	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
HERC6	0	genome.wustl.edu	37	4	89363548	89363548	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	4	89363548	89363548	A	G	SNP	HERC6	NM_017912.3	human	genbank	58_37c	+1	validated	missense	c.3005	p.E1002G	1.000	HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,superfamily_RCC1/BLIP-II	-	no_errors
HIVEP1	0	genome.wustl.edu	37	6	12131113	12131113	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	12131113	12131113	G	A	SNP	HIVEP1	NM_002114.2	human	genbank	58_37c	+1	validated	missense	c.6323	p.R2108Q	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
HOOK3	0	genome.wustl.edu	37	8	42798513	42798513	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	8	42798513	42798513	C	A	SNP	HOOK3	NM_032410.3	human	genbank	58_37c	+1	validated	missense	c.325	p.H109N	1.000	HMMPfam_HOOK	HMMPfam_HOOK	-	no_errors
HSPA8	0	genome.wustl.edu	37	11	122930239	122930241	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	11	122930239	122930241	GAA	-	DEL	HSPA8	NM_006597.3	human	genbank	58_37c	-1	reviewed	in_frame_del	c.1062_1060	p.F354in_frame_del	1.000:1.000:1.000	HMMPfam_HSP70,superfamily_Actin-like ATPase domain	HMMPfam_HSP70,PatternScan_HSP70_1,PatternScan_HSP70_2,PatternScan_HSP70_3,superfamily_Heat shock protein 70kD (HSP70) peptide-binding domain,superfamily_Heat shock protein 70kD (HSP70) C-terminal subdomain,superfamily_Actin-like ATPase domain	-	no_errors
IMP5	0	genome.wustl.edu	37	17	43924233	43924233	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	43924233	43924233	C	T	SNP	IMP5	NM_175882.2	human	genbank	58_37c	+1	validated	missense	c.1961	p.A654V	0.967	NULL	HMMSmart_SM00730,HMMPfam_Peptidase_A22B,superfamily_Transferrin receptor ectodomain apical domain	-	no_errors
ITPR1	0	genome.wustl.edu	37	3	4730264	4730264	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	3	4730264	4730264	C	A	SNP	ITPR1	NM_001099952.2	human	genbank	58_37c	+1	reviewed	missense	c.3761	p.A1254D	0.992	HMMPfam_RYDR_ITPR	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,superfamily_IP3 receptor type 1 binding core domain 2	-	no_errors
KCNH7	0	genome.wustl.edu	37	2	163693155	163693155	+	Missense_Mutation	SNP	C	C	T	rs138091231	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	2	163693155	163693155	C	T	SNP	KCNH7	NM_033272.2	human	genbank	58_37c	-1	reviewed	missense	c.199	p.D67N	1.000	superfamily_PYP-like sensor domain (PAS domain)	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
LOC643668	0	genome.wustl.edu	37	12	18846828	18846828	+	RNA	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	12	18846828	18846828	C	T	SNP	LOC643668	XR_016986.3	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.998	-	-	-	pseudogene
LRRTM3	0	genome.wustl.edu	37	10	68686978	68686978	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	10	68686978	68686978	G	A	SNP	LRRTM3	NM_178011.3	human	genbank	58_37c	+1	validated	missense	c.304	p.E102K	1.000	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
MAP2K4	0	genome.wustl.edu	37	17	12032459	12032459	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	12032459	12032459	G	T	SNP	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	nonsense	c.895	p.E299*	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MIER1	0	genome.wustl.edu	37	1	67424667	67424668	+	Splice_Site	INS	-	-	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	67424667	67424668	-	T	INS	MIER1	NM_020948.3	human	genbank	58_37c	+1	validated	splice_site_ins	c.547+1_547+1	e6+1	1.000:1.000	-	-	-	no_errors
MORN1	0	genome.wustl.edu	37	1	2304001	2304001	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	2304001	2304001	G	C	SNP	MORN1	NM_024848.1	human	genbank	58_37c	-1	provisional	missense	c.664	p.P222A	0.839	NULL	HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	-	no_errors
NOS2	0	genome.wustl.edu	37	17	26116644	26116644	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	26116644	26116644	C	T	SNP	NOS2	NM_000625.4	human	genbank	58_37c	-1	reviewed	missense	c.181	p.V61M	0.000	NULL	HMMPfam_NAD_binding_1,HMMPfam_FAD_binding_1,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,superfamily_Flavoproteins,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
OBSCN	0	genome.wustl.edu	37	1	228480325	228480325	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	228480325	228480325	T	C	SNP	OBSCN	NM_001098623.1	human	genbank	58_37c	+1	reviewed	missense	c.10705	p.W3569R	1.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_Immunoglobulin,superfamily_PH domain-like	-	no_errors
PGAP1	0	genome.wustl.edu	37	2	197707454	197707454	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	2	197707454	197707454	A	G	SNP	PGAP1	NM_024989.3	human	genbank	58_37c	-1	validated	missense	c.2621	p.I874T	0.993	NULL	HMMPfam_PGAP1,superfamily_alpha/beta-Hydrolases	-	no_errors
PREX2	0	genome.wustl.edu	37	8	68965476	68965476	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	8	68965476	68965476	G	A	SNP	PREX2	NM_024870.2	human	genbank	58_37c	+1	validated	missense	c.1088	p.R363Q	1.000	HMMSmart_SM00233,superfamily_PH domain-like	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
SDK1	0	genome.wustl.edu	37	7	4249712	4249712	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	7	4249712	4249712	C	T	SNP	SDK1	NM_152744.3	human	genbank	58_37c	+1	validated	silent	c.5457	p.N1819	0.868	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SELPLG	0	genome.wustl.edu	37	12	109017672	109017674	+	In_Frame_Del	DEL	GCA	GCA	-	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	GCA	GCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	12	109017672	109017674	GCA	-	DEL	SELPLG	ENST00000228463	human	ensembl	58_37c	-1	known	in_frame_del	c.412_410	p.VP137in_frame_delA	0.000:0.000:0.000	NULL	NULL	-	no_errors
SLC16A14	0	genome.wustl.edu	37	2	230910775	230910775	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	2	230910775	230910775	G	A	SNP	SLC16A14	NM_152527.4	human	genbank	58_37c	-1	validated	missense	c.1067	p.T356M	0.995	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SPTB	0	genome.wustl.edu	37	14	65220359	65220359	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	14	65220359	65220359	G	A	SNP	SPTB	NM_001024858.2	human	genbank	58_37c	-1	reviewed	silent	c.6498	p.P2166	0.000	HMMSmart_SPEC,superfamily_SSF50729	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_PH,HMMSmart_PH,HMMPfam_Spectrin,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF50729	-	no_errors
SYNE1	0	genome.wustl.edu	37	6	152861113	152861113	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	6	152861113	152861113	G	A	SNP	SYNE1	NM_182961.2	human	genbank	58_37c	-1	reviewed	silent	c.111	p.I37	1.000	PatternScan_ACTININ_1,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,HMMPfam_KASH,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat	-	no_errors
TBC1D3	0	genome.wustl.edu	37	17	36339584	36339584	+	Missense_Mutation	SNP	G	T	T	rs4795237	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	17	36339584	36339584	G	T	SNP	TBC1D3	NM_001123391.2	human	genbank	58_37c	-1	validated	missense	c.1073	p.P358Q	1.000	NULL	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p	-	no_errors
UMPS	0	genome.wustl.edu	37	3	124457125	124457125	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	3	124457125	124457125	C	A	SNP	UMPS	ENST00000479719	human	ensembl	58_37c	+1	known	missense	c.1021	p.P341T	0.008	NULL	HMMPfam_Pribosyltran,HMMPfam_OMPdecase,PatternScan_PUR_PYR_PR_TRANSFER,superfamily_Ribulose-phoshate binding barrel,PatternScan_OMPDECASE,superfamily_PRTase-like	-	no_errors
USP7	0	genome.wustl.edu	37	16	8997212	8997212	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	16	8997212	8997212	G	A	SNP	USP7	NM_003470.2	human	genbank	58_37c	-1	validated	silent	c.1752	p.Y584	0.571	NULL	HMMPfam_UCH,HMMPfam_MATH,HMMSmart_MATH,superfamily_Traf_like,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
WRB	0	genome.wustl.edu	37	21	40762623	40762637	+	Splice_Site	DEL	GATGTCCAGGGTGCT	GATGTCCAGGGTGCT	-	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	GATGTCCAGGGTGCT	GATGTCCAGGGTGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	21	40762623	40762637	GATGTCCAGGGTGCT	-	DEL	WRB	NM_004627.4	human	genbank	58_37c	+1	reviewed	splice_site_del	c.103-1_103-1	e2-1	1.000:0.990:1.000:1.000:1.000:1.000:0.998:0.999:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	no_errors
ZNF683	0	genome.wustl.edu	37	1	26688661	26688661	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A1IG-01A-11D-A142-09	TCGA-E2-A1IG-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	84da47a3-49e1-4f94-bea9-dd20b6627adb	9859da9f-72c1-4f68-a054-4d103170d785	1	26688661	26688661	C	T	SNP	ZNF683	ENST00000403843	human	ensembl	58_37c	-1	known	silent	c.1149	p.P383	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
