Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AFF2	0	genome.wustl.edu	37	X	147733596	147733596	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	X	147733596	147733596	G	T	SNP	AFF2	NM_002025.3	human	genbank	58_37c	+1	reviewed	missense	c.124	p.D42Y	0.998	HMMPfam_AF-4	HMMPfam_AF-4	-	no_errors
ANKRD18B	0	genome.wustl.edu	37	9	33524338	33524339	+	Frame_Shift_Ins	INS	-	-	ATCGCGGGTTTGGGGGTGG	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	9	33524338	33524339	-	ATCGCGGGTTTGGGGGTGG	INS	ANKRD18B	XM_001718334.2	human	genbank	58_37c	+1	model	frame_shift_ins	c.369_370	p.V125fs	0.562:0.557	superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
C16orf48	0	genome.wustl.edu	37	16	67697208	67697208	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	16	67697208	67697208	C	A	SNP	C16orf48	NM_032140.1	human	genbank	58_37c	-1	predicted	silent	c.897	p.L299	0.699	NULL	NULL	-	no_errors
CACNB3	0	genome.wustl.edu	37	12	49220772	49220772	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	12	49220772	49220772	A	G	SNP	CACNB3	NM_000725.2	human	genbank	58_37c	+1	validated	missense	c.1006	p.I336V	1.000	HMMPfam_Ca_channel_B,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Ca_channel_B,superfamily_SH3-domain,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDCA2	0	genome.wustl.edu	37	8	25341520	25341520	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	8	25341520	25341520	A	G	SNP	CDCA2	NM_152562.2	human	genbank	58_37c	+1	validated	missense	c.1159	p.M387V	0.000	NULL	NULL	-	no_errors
CEP170	0	genome.wustl.edu	37	1	243327844	243327844	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	1	243327844	243327844	C	T	SNP	CEP170	NM_014812.2	human	genbank	58_37c	-1	reviewed	missense	c.3418	p.G1140R	1.000	NULL	HMMPfam_FHA,HMMSmart_SM00240,superfamily_SMAD/FHA domain	-	no_errors
DMD	0	genome.wustl.edu	37	X	31165493	31165493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	X	31165493	31165493	G	A	SNP	DMD	NM_004006.2	human	genbank	58_37c	-1	reviewed	missense	c.10696	p.R3566C	1.000	superfamily_Prefoldin	HMMPfam_ZZ,HMMSmart_SM00291,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_SM00456,PatternScan_WW_DOMAIN_1,superfamily_WW domain,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_Spectrin,superfamily_Prefoldin,superfamily_t-snare proteins,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology domain CH-domain,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DNMT3B	0	genome.wustl.edu	37	20	31376692	31376692	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	20	31376692	31376692	G	A	SNP	DNMT3B	NM_006892.3	human	genbank	58_37c	+1	reviewed	silent	c.687	p.V229	0.998	HMMPfam_PWWP,HMMSmart_SM00293,superfamily_Tudor/PWWP/MBT	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
EHBP1L1	0	genome.wustl.edu	37	11	65350230	65350230	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	65350230	65350230	C	G	SNP	EHBP1L1	NM_001099409.1	human	genbank	58_37c	+1	validated	missense	c.2087	p.S696C	0.000	NULL	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	-	no_errors
EHBP1L1	0	genome.wustl.edu	37	11	65351789	65351789	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	65351789	65351789	C	G	SNP	EHBP1L1	NM_001099409.1	human	genbank	58_37c	+1	validated	silent	c.3171	p.V1057	0.989	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	-	no_errors
EHBP1L1	0	genome.wustl.edu	37	11	65351858	65351858	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	65351858	65351858	C	G	SNP	EHBP1L1	NM_001099409.1	human	genbank	58_37c	+1	validated	nonsense	c.3240	p.Y1080*	0.999	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	-	no_errors
ENSG00000198580	0	genome.wustl.edu	37	7	6714789	6714791	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	7	6714789	6714791	CTT	-	DEL	ENSG00000198580	ENST00000401847	human	ensembl	58_37c	+1	known	in_frame_del	c.501_503	p.F168in_frame_del	0.020:0.594:0.594	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_start_codon:no_stop_codon
FGG	0	genome.wustl.edu	37	4	155533321	155533321	+	Splice_Site	SNP	T	T	A	rs11551836	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	4	155533321	155533321	T	A	SNP	FGG	ENST00000443553	human	ensembl	58_37c	-1	known	splice_site	c.1-2	e1-2	1.000	-	-	-	no_stop_codon
GBA3	0	genome.wustl.edu	37	4	22749308	22749308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	4	22749308	22749308	G	A	SNP	GBA3	NM_020973.3	human	genbank	58_37c	+1	validated	missense	c.676	p.A226T	0.000	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_1,superfamily_(Trans)glycosidases,PatternScan_GLYCOSYL_HYDROL_F1_2	-	pseudogene
HERC1	0	genome.wustl.edu	37	15	64041947	64041947	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	15	64041947	64041947	G	A	SNP	HERC1	NM_003922.3	human	genbank	58_37c	-1	reviewed	missense	c.1946	p.S649L	1.000	superfamily_RCC1/BLIP-II	HMMPfam_RCC1,PatternScan_RCC1_2,HMMPfam_HECT,HMMSmart_SM00119,superfamily_Hect E3 ligase catalytic domain,HMMSmart_SM00320,HMMPfam_SPRY,PatternScan_ARGINASE_2,PatternScan_PHOSPHOPANTETHEINE,superfamily_RCC1/BLIP-II,superfamily_WD40 repeat-like,HMMSmart_SM00449,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
HEXB	0	genome.wustl.edu	37	5	73985157	73985157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	5	73985157	73985157	C	T	SNP	HEXB	NM_000521.3	human	genbank	58_37c	+1	reviewed	missense	c.304	p.H102Y	0.168	HMMPfam_Glyco_hydro_20b,superfamily_beta-N-acetylhexosaminidase-like domain	HMMPfam_Glyco_hydro_20b,HMMPfam_Glyco_hydro_20,superfamily_(Trans)glycosidases,superfamily_beta-N-acetylhexosaminidase-like domain	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377071	168377071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	6	168377071	168377071	G	A	SNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	missense	c.262	p.P88S	0.713	NULL	NULL	-	no_errors
HGC6.3	0	genome.wustl.edu	37	6	168377261	168377262	+	Silent	DNP	TT	TT	CG	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	6	168377261	168377262	TT	CG	DNP	HGC6.3	NM_001129895.1	human	genbank	58_37c	-1	predicted	missense	c.72_71	p.Q24P	0.016:0.012	NULL	NULL	-	no_errors
IFITM3	0	genome.wustl.edu	37	11	319891	319891	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	319891	319891	T	A	SNP	IFITM3	NM_021034.2	human	genbank	58_37c	-1	validated	missense	c.349	p.M117L	0.000	HMMPfam_CD225	HMMPfam_CD225	-	no_errors
IGHV3-21	0	genome.wustl.edu	37	14	106691797	106691799	+	In_Frame_Del	DEL	TAA	TAA	-	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	TAA	TAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	14	106691797	106691799	TAA	-	DEL	IGHV3-21	ENST00000390607	human	ensembl	58_37c	-1	known	in_frame_del	c.227_225	p.Y76in_frame_del	0.000:0.000:0.000	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
IGHV3-7	0	genome.wustl.edu	37	14	106518415	106518415	+	Silent	SNP	C	C	A	rs188349361	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	14	106518415	106518415	C	A	SNP	IGHV3-7	ENST00000390598	human	ensembl	58_37c	-1	known	silent	c.336	p.V112	0.756	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_stop_codon
LOC100289317	0	genome.wustl.edu	37	22	45723982	45723982	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	22	45723982	45723982	C	A	SNP	LOC100289317	XM_002343782.1	human	genbank	58_37c	-1	model	missense	c.260	p.C87F	0.000	NULL	NULL	-	no_errors
LSM14B	0	genome.wustl.edu	37	20	60701300	60701300	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	20	60701300	60701300	G	A	SNP	LSM14B	ENST00000400318	human	ensembl	58_37c	+1	known	missense	c.310	p.E104K	0.023	NULL	HMMPfam_DFDF	-	no_stop_codon
MEF2A	0	genome.wustl.edu	37	15	100247006	100247006	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	15	100247006	100247006	A	G	SNP	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	missense	c.937	p.S313G	0.999	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MEN1	0	genome.wustl.edu	37	11	64577353	64577357	+	Frame_Shift_Del	DEL	AGGTG	AGGTG	-	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	AGGTG	AGGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	11	64577353	64577357	AGGTG	-	DEL	MEN1	NM_000244.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.229_225	p.T76fs	1.000:1.000:1.000:1.000:1.000	HMMPfam_Menin	HMMPfam_Menin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195508571	195508571	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	3	195508571	195508571	T	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.9496	p.T3166A	0.001	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195513481	195513481	+	Missense_Mutation	SNP	G	G	A	rs77462830	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	3	195513481	195513481	G	A	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.4970	p.A1657V	0.045	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NEB	0	genome.wustl.edu	37	2	152387588	152387599	+	In_Frame_Del	DEL	CCTTGTTGTATT	CCTTGTTGTATT	-	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	CCTTGTTGTATT	CCTTGTTGTATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	2	152387588	152387599	CCTTGTTGTATT	-	DEL	NEB	NM_004543.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.16447_16436	p.EYNK5479in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_Nebulin,HMMSmart_SM00227	HMMPfam_Nebulin,HMMSmart_SM00227,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
OR11H12	0	genome.wustl.edu	37	14	19377859	19377859	+	Missense_Mutation	SNP	T	T	C	rs150290074	byFrequency	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	14	19377859	19377859	T	C	SNP	OR11H12	NM_001013354.1	human	genbank	58_37c	+1	provisional	missense	c.266	p.V89A	0.108	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2A5	0	genome.wustl.edu	37	7	143747698	143747698	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	7	143747698	143747698	T	C	SNP	OR2A5	NM_012365.1	human	genbank	58_37c	+1	provisional	silent	c.204	p.I68	0.003	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PABPC3	0	genome.wustl.edu	37	13	25671097	25671098	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	13	25671097	25671098	-	T	INS	PABPC3	NM_030979.2	human	genbank	58_37c	+1	validated	frame_shift_ins	c.761_762	p.K254fs	1.000:1.000	HMMPfam_RRM_1,HMMSmart_SM00360,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_PABP,HMMSmart_SM00517,superfamily_PABC (PABP) domain,HMMSmart_SM00361,superfamily_RNA-binding domain RBD	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLA2G4A	0	genome.wustl.edu	37	1	186934625	186934625	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	1	186934625	186934625	A	C	SNP	PLA2G4A	NM_024420.2	human	genbank	58_37c	+1	reviewed	missense	c.1664	p.N555T	1.000	PatternScan_SUBTILASE_ASP,HMMPfam_PLA2_B,HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like	HMMPfam_C2,HMMSmart_SM00239,PatternScan_SUBTILASE_ASP,HMMPfam_PLA2_B,HMMSmart_SM00022,PatternScan_PPASE,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FabD/lysophospholipase-like	-	no_errors
POLR2J	0	genome.wustl.edu	37	7	102119254	102119256	+	Splice_Site	DEL	CTT	CTT	-	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	7	102119254	102119256	CTT	-	DEL	POLR2J	NM_006234.4	human	genbank	58_37c	-1	reviewed	splice_site_del	c.53+3_53+1	e2-1	1.000:1.000:1.000	-	-	-	no_errors
PTPRC	0	genome.wustl.edu	37	1	198697545	198697545	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	1	198697545	198697545	C	T	SNP	PTPRC	NM_002838.3	human	genbank	58_37c	+1	reviewed	silent	c.1791	p.Y597	0.998	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
SAMHD1	0	genome.wustl.edu	37	20	35533890	35533890	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	20	35533890	35533890	C	G	SNP	SAMHD1	NM_015474.3	human	genbank	58_37c	-1	reviewed	missense	c.1287	p.E429D	1.000	NULL	HMMSmart_SAM,HMMSmart_HDc,HMMPfam_HD,superfamily_SAM_homology,HMMPfam_SAM_2,superfamily_SSF109604	-	no_errors
SEPT14	0	genome.wustl.edu	37	7	55914256	55914256	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	7	55914256	55914256	C	T	SNP	SEPT14	NM_207366.2	human	genbank	58_37c	-1	validated	silent	c.129	p.V43	0.994	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Septin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SLCO1C1	0	genome.wustl.edu	37	12	20905442	20905442	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	12	20905442	20905442	G	A	SNP	SLCO1C1	NM_017435.4	human	genbank	58_37c	+1	reviewed	missense	c.2119	p.G707S	1.000	NULL	HMMSmart_KAZAL,HMMPfam_OATP,HMMPfam_Kazal_2,superfamily_MFS_gen_substrate_transporter,superfamily_SSF100895	-	no_errors
TMCC2	0	genome.wustl.edu	37	1	205210727	205210727	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	1	205210727	205210727	C	T	SNP	TMCC2	NM_014858.3	human	genbank	58_37c	+1	validated	missense	c.302	p.T101M	0.261	NULL	HMMPfam_Tmemb_cc2	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578271	7578271	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	17	7578271	7578271	T	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.578	p.H193R	0.998	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
UBR2	0	genome.wustl.edu	37	6	42585066	42585066	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	6	42585066	42585066	C	T	SNP	UBR2	NM_015255.2	human	genbank	58_37c	+1	reviewed	missense	c.1271	p.A424V	1.000	NULL	PatternScan_RCC1_2,PatternScan_LIPOCALIN,HMMPfam_zf-UBR,HMMPfam_ClpS,HMMSmart_SM00396,superfamily_ClpS-like	-	no_errors
WNT7A	0	genome.wustl.edu	37	3	13896211	13896211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	3	13896211	13896211	C	T	SNP	WNT7A	NM_004625.3	human	genbank	58_37c	-1	reviewed	missense	c.388	p.D130N	1.000	HMMPfam_wnt,HMMSmart_SM00097	HMMPfam_wnt,HMMSmart_SM00097,PatternScan_WNT1	-	no_errors
ZNF804B	0	genome.wustl.edu	37	7	88963249	88963249	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N5-01A-11D-A14G-09	TCGA-E9-A1N5-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	432a9f5e-0f2a-4cd2-a910-ee9ee30c1ff3	1fee18d6-ef4c-4d28-a30b-874845f32193	7	88963249	88963249	T	C	SNP	ZNF804B	NM_181646.2	human	genbank	58_37c	+1	provisional	missense	c.953	p.I318T	0.000	NULL	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2	-	no_errors
