Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAM11	0	genome.wustl.edu	37	17	42855138	42855138	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	42855138	42855138	G	C	SNP	ADAM11	NM_002390.4	human	genbank	58_37c	+1	reviewed	missense	c.1977	p.M659I	1.000	HMMSmart_SM00608	"HMMPfam_Reprolysin,HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin),HMMPfam_Pep_M12B_propep,HMMPfam_ADAM_CR,HMMSmart_SM00608,PatternScan_EGF_1,HMMPfam_EGF_2,PatternScan_DISINTEGRIN_1,superfamily_Metalloproteases (""zincins"") catalytic domain,superfamily_EGF/Laminin"	-	no_errors
ALG3	0	genome.wustl.edu	37	3	183963556	183963556	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	3	183963556	183963556	C	T	SNP	ALG3	NM_005787.5	human	genbank	58_37c	-1	reviewed	missense	c.241	p.V81I	0.992	HMMPfam_ALG3	HMMPfam_ALG3	-	no_errors
BAT2L2	0	genome.wustl.edu	37	1	171494044	171494044	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	171494044	171494044	A	G	SNP	BAT2L2	NM_015172.3	human	genbank	58_37c	+1	validated	silent	c.1134	p.Q378	0.862	NULL	HMMPfam_BAT2_N	-	no_errors
CCDC39	0	genome.wustl.edu	37	3	180379771	180379771	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	3	180379771	180379771	C	T	SNP	CCDC39	NM_181426.1	human	genbank	58_37c	-1	validated	missense	c.235	p.E79K	1.000	NULL	superfamily_Prefoldin	-	no_errors
CDH9	0	genome.wustl.edu	37	5	26881562	26881562	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	26881562	26881562	C	A	SNP	CDH9	NM_016279.3	human	genbank	58_37c	-1	reviewed	missense	c.2053	p.D685Y	1.000	HMMPfam_Cadherin_C	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin	-	no_errors
DCHS2	0	genome.wustl.edu	37	4	155160378	155160378	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	155160378	155160378	T	A	SNP	DCHS2	NM_017639.3	human	genbank	58_37c	-1	validated	missense	c.6071	p.N2024I	0.026	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DCHS2	0	genome.wustl.edu	37	4	155411020	155411020	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	155411020	155411020	G	T	SNP	DCHS2	NM_001142552.1	human	genbank	58_37c	-1	validated	silent	c.1488	p.P496	0.997	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
DENND4B	0	genome.wustl.edu	37	1	153907279	153907287	+	In_Frame_Del	DEL	CTGCTGCTG	CTGCTGCTG	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	CTGCTGCTG	CTGCTGCTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	153907279	153907287	CTGCTGCTG	-	DEL	DENND4B	NM_014856.2	human	genbank	58_37c	-1	validated	in_frame_del	c.2730_2722	p.QQQ908in_frame_del	0.792:0.815:0.846:0.964:0.974:0.990:0.990:0.986:0.989	NULL	HMMPfam_DENN,HMMSmart_DENN,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_dDENN,HMMPfam_uDENN,HMMSmart_uDENN	-	no_errors
DHX8	0	genome.wustl.edu	37	17	41570310	41570310	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	41570310	41570310	C	A	SNP	DHX8	NM_004941.1	human	genbank	58_37c	+1	reviewed	missense	c.765	p.D255E	1.000	NULL	HMMPfam_Helicase_C,HMMSmart_HELICc,PatternScan_DEAH_ATP_HELICASE,HMMPfam_S1,HMMPfam_HA2,HMMPfam_DUF1605,HMMSmart_DEXDc,superfamily_Nucleic_acid_OB,HMMSmart_S1,superfamily_SSF52540	-	no_errors
DIP2A	0	genome.wustl.edu	37	21	47910571	47910571	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	21	47910571	47910571	C	G	SNP	DIP2A	NM_015151.3	human	genbank	58_37c	+1	reviewed	silent	c.222	p.A74	0.000	HMMPfam_DMAP_binding	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
DMKN	0	genome.wustl.edu	37	19	36002487	36002487	+	Silent	SNP	G	G	A	rs145561433	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	19	36002487	36002487	G	A	SNP	DMKN	NM_033317.3	human	genbank	58_37c	-1	reviewed	silent	c.744	p.S248	0.087	NULL	NULL	-	no_errors
DNAJC28	0	genome.wustl.edu	37	21	34860884	34860884	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	21	34860884	34860884	C	G	SNP	DNAJC28	NM_001040192.1	human	genbank	58_37c	-1	validated	missense	c.817	p.A273P	0.017	HMMPfam_DUF1992	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,PatternScan_DNAJ_1,HMMPfam_DUF1992	-	no_errors
DNAJC28	0	genome.wustl.edu	37	21	34861683	34861683	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	21	34861683	34861683	C	T	SNP	DNAJC28	NM_001040192.1	human	genbank	58_37c	-1	validated	silent	c.18	p.V6	0.014	NULL	HMMPfam_DnaJ,HMMSmart_DnaJ,superfamily_DnaJ_N,PatternScan_DNAJ_1,HMMPfam_DUF1992	-	no_errors
DSPP	0	genome.wustl.edu	37	4	88537298	88537306	+	In_Frame_Del	DEL	AGCAGCGAT	AGCAGCGAT	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	AGCAGCGAT	AGCAGCGAT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	88537298	88537306	AGCAGCGAT	-	DEL	DSPP	NM_014208.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3484_3492	p.SSD1165in_frame_del	0.007:0.006:0.008:0.010:0.005:0.000:0.000:0.001:0.000	NULL	NULL	-	no_errors
EFHD1	0	genome.wustl.edu	37	2	233546363	233546365	+	In_Frame_Del	DEL	GGA	GGA	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	GGA	GGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	2	233546363	233546365	GGA	-	DEL	EFHD1	NM_025202.3	human	genbank	58_37c	+1	validated	in_frame_del	c.654_656	p.E222in_frame_del	0.139:0.908:0.992	NULL	HMMSmart_EFh,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
EGFL8	0	genome.wustl.edu	37	6	32133979	32133979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	6	32133979	32133979	G	A	SNP	EGFL8	NM_030652.2	human	genbank	58_37c	+1	validated	missense	c.37	p.G13R	0.017	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
ENSG00000224343	0	genome.wustl.edu	37	6	160132356	160132373	+	In_Frame_Del	DEL	CTCACACTGCTCTGACCT	CTCACACTGCTCTGACCT	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	CTCACACTGCTCTGACCT	CTCACACTGCTCTGACCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	6	160132356	160132373	CTCACACTGCTCTGACCT	-	DEL	ENSG00000224343	ENST00000442642	human	ensembl	58_37c	-1	known	in_frame_del	c.470_453	p.QSSVSG153in_frame_del	0.042:0.038:0.034:0.030:0.024:0.019:0.019:0.019:0.018:0.017:0.015:0.014:0.011:0.008:0.005:0.005:0.004:0.005	NULL	NULL	-	no_start_codon
ENSG00000227324	0	genome.wustl.edu	37	17	56738657	56738657	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	56738657	56738657	C	T	SNP	ENSG00000227324	ENST00000453538	human	ensembl	58_37c	-1	known	missense	c.304	p.D102N	0.840	HMMPfam_TAP42	HMMPfam_TAP42	-	no_errors
ENSG00000231520	0	genome.wustl.edu	37	10	42380416	42380416	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	10	42380416	42380416	G	C	SNP	ENSG00000231520	ENST00000413838	human	ensembl	58_37c	-1	known	missense	c.116	p.T39S	0.000	NULL	NULL	-	no_stop_codon
ENSG00000232657	0	genome.wustl.edu	37	4	49110258	49110258	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	49110258	49110258	C	T	SNP	ENSG00000232657	ENST00000417378	human	ensembl	58_37c	-1	known	nonsense	c.141	p.W47*	0.000	NULL	NULL	-	no_stop_codon
ENSG00000236623	0	genome.wustl.edu	37	10	42391422	42391422	+	RNA	SNP	A	A	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	10	42391422	42391422	A	G	SNP	ENSG00000236623	ENST00000423802	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
ENSG00000245479	0	genome.wustl.edu	37	15	91203878	91203878	+	RNA	SNP	G	C	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	15	91203878	91203878	G	C	SNP	ENSG00000245479	ENST00000500496	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.003	-	-	-	no_errors
EPHA5	0	genome.wustl.edu	37	4	66356262	66356262	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	66356262	66356262	A	T	SNP	EPHA5	NM_004439.5	human	genbank	58_37c	-1	reviewed	missense	c.1235	p.V412D	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,HMMPfam_BmKX,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
ETV1	0	genome.wustl.edu	37	7	14025746	14025746	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	14025746	14025746	G	T	SNP	ETV1	ENST00000403527	human	ensembl	58_37c	-1	known	missense	c.56	p.T19K	0.988	NULL	"HMMPfam_Ets,HMMSmart_SM00413,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_ETS_PEA3_N,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
FAM84A	0	genome.wustl.edu	37	2	14774361	14774361	+	Silent	SNP	T	C	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	2	14774361	14774361	T	C	SNP	FAM84A	NM_145175.2	human	genbank	58_37c	+1	validated	silent	c.258	p.F86	1.000	NULL	NULL	-	no_errors
GNB2L1	0	genome.wustl.edu	37	5	180665141	180665141	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	180665141	180665141	G	C	SNP	GNB2L1	ENST00000507756	human	ensembl	58_37c	-1	known	missense	c.527	p.A176G	0.996	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
GOLGA6L1	0	genome.wustl.edu	37	15	22743235	22743235	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	15	22743235	22743235	A	G	SNP	GOLGA6L1	NM_001001413.3	human	genbank	58_37c	+1	provisional	silent	c.1620	p.R540	0.274	NULL	NULL	-	no_errors
GTF3C4	0	genome.wustl.edu	37	9	135553785	135553785	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	9	135553785	135553785	A	G	SNP	GTF3C4	NM_012204.2	human	genbank	58_37c	+1	validated	missense	c.779	p.Q260R	1.000	NULL	NULL	-	no_errors
HYAL4	0	genome.wustl.edu	37	7	123508629	123508629	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	123508629	123508629	A	G	SNP	HYAL4	NM_012269.2	human	genbank	58_37c	+1	reviewed	missense	c.302	p.Y101C	0.998	HMMPfam_Glyco_hydro_56,superfamily_Glyco_hydro_cat	HMMPfam_Glyco_hydro_56,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Glyco_hydro_cat	-	no_errors
KCNH6	0	genome.wustl.edu	37	17	61619777	61619777	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	61619777	61619777	C	A	SNP	KCNH6	NM_030779.2	human	genbank	58_37c	+1	reviewed	silent	c.2130	p.V710	1.000	HMMSmart_SM00100	HMMPfam_cNMP_binding,HMMSmart_SM00100,HMMPfam_Ion_trans,HMMPfam_PAS,superfamily_cAMP-binding domain-like,superfamily_PYP-like sensor domain (PAS domain),superfamily_Voltage-gated potassium channels	-	no_errors
KRTAP22-2	0	genome.wustl.edu	37	21	31962623	31962623	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	21	31962623	31962623	G	T	SNP	KRTAP22-2	ENST00000382830	human	ensembl	58_37c	-1	known	missense	c.71	p.S24Y	0.000	NULL	NULL	-	no_errors
LCORL	0	genome.wustl.edu	37	4	17885617	17885617	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	17885617	17885617	C	T	SNP	LCORL	ENST00000382226	human	ensembl	58_37c	-1	known	missense	c.1535	p.S512N	1.000	NULL	HMMPfam_HTH_psq	-	no_errors
LILRB5	0	genome.wustl.edu	37	19	54758227	54758227	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	19	54758227	54758227	C	T	SNP	LILRB5	NM_001081442.1	human	genbank	58_37c	-1	reviewed	splice_site	c.1306+1	e7+1	0.000	-	-	-	no_errors
LOC100132858	0	genome.wustl.edu	37	7	35442	35443	+	In_Frame_Ins	INS	-	-	TGC	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	35442	35443	-	TGC	INS	LOC100132858	XM_001715131.2	human	genbank	58_37c	-1	model	in_frame_ins	c.255_254	p.86in_frame_insQ	0.128:0.044	NULL	NULL	-	no_errors
LOC644578	0	genome.wustl.edu	37	4	64215882	64215882	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	64215882	64215882	C	A	SNP	LOC644578	XM_927694.2	human	genbank	58_37c	+1	model	missense	c.531	p.S177R	0.001	NULL	"HMMPfam_La,HMMSmart_SM00715,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
LPA	0	genome.wustl.edu	37	6	161007579	161007579	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	6	161007579	161007579	T	C	SNP	LPA	NM_005577.2	human	genbank	58_37c	-1	reviewed	missense	c.4031	p.E1344G	1.000	HMMPfam_Kringle,HMMSmart_SM00130,superfamily_Kringle-like	HMMPfam_Kringle,HMMSmart_SM00130,HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,superfamily_Kringle-like,PatternScan_KRINGLE_1,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
LRP2	0	genome.wustl.edu	37	2	169993902	169993902	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	2	169993902	169993902	C	A	SNP	LRP2	NM_004525.2	human	genbank	58_37c	-1	reviewed	missense	c.13620	p.Q4540H	0.984	NULL	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
MACF1	0	genome.wustl.edu	37	1	39838233	39838233	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	39838233	39838233	T	C	SNP	MACF1	NM_033044.2	human	genbank	58_37c	+1	reviewed	missense	c.8498	p.M2833T	1.000	HMMPfam_Spectrin,HMMSmart_SPEC	HMMPfam_Plectin,HMMSmart_PLEC,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_GAS2,HMMSmart_GAS2,PatternScan_GLYCOSYL_HYDROL_F5,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473,superfamily_SSF75399	-	no_errors
MAML2	0	genome.wustl.edu	37	11	95825372	95825374	+	In_Frame_Del	DEL	TGT	TGT	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	11	95825372	95825374	TGT	-	DEL	MAML2	NM_032427.1	human	genbank	58_37c	-1	validated	in_frame_del	c.1823_1821	p.Q611in_frame_del	0.003:0.003:0.003	NULL	HMMPfam_MamL-1	-	no_errors
MAP3K1	0	genome.wustl.edu	37	5	56177954	56177954	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	56177954	56177954	C	T	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	missense	c.2927	p.S976F	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MEF2A	0	genome.wustl.edu	37	15	100252710	100252712	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	15	100252710	100252712	CAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1236	p.Q415in_frame_del	1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MID1	0	genome.wustl.edu	37	X	10442722	10442722	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	X	10442722	10442722	G	A	SNP	MID1	NM_000381.2	human	genbank	58_37c	-1	reviewed	missense	c.1082	p.T361I	1.000	NULL	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMSmart_SM00502,HMMPfam_SPRY,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279837	46279839	+	In_Frame_Del	DEL	CAG	CAG	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	CAG	CAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	20	46279837	46279839	CAG	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3763_3765	p.Q1258in_frame_del	0.584:0.607:0.598	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124887058	124887059	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	12	124887058	124887059	-	GCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1532_1531	p.511in_frame_insQ	0.999:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NFE2L3	0	genome.wustl.edu	37	7	26225179	26225180	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	AA	AA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	26225179	26225180	AA	-	DEL	NFE2L3	NM_004289.6	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1861_1862	p.K621fs	0.004:0.004	HMMSmart_BRLZ,HMMPfam_bZIP_1	HMMSmart_BRLZ,PatternScan_BZIP_BASIC,superfamily_Euk_transcr_DNA,HMMPfam_bZIP_1	-	no_errors
OR13C5	0	genome.wustl.edu	37	9	107361066	107361066	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	9	107361066	107361066	G	T	SNP	OR13C5	NM_001004482.1	human	genbank	58_37c	-1	provisional	missense	c.629	p.P210H	0.012	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PARP8	0	genome.wustl.edu	37	5	50130705	50130705	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	50130705	50130705	G	T	SNP	PARP8	ENST00000503561	human	ensembl	58_37c	+1	known	nonsense	c.1540	p.E514*	0.000	NULL	HMMPfam_PARP,superfamily_ADP-ribosylation	-	no_errors
PCDHA2	0	genome.wustl.edu	37	5	140174742	140174742	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	140174742	140174742	C	T	SNP	PCDHA2	NM_018905.2	human	genbank	58_37c	+1	reviewed	missense	c.193	p.R65W	0.658	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCDHB6	0	genome.wustl.edu	37	5	140531962	140531962	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	140531962	140531962	G	A	SNP	PCDHB6	NM_018939.2	human	genbank	58_37c	+1	reviewed	silent	c.2124	p.A708	0.000	NULL	HMMPfam_Cadherin,HMMSmart_CA,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin	-	no_errors
PCDHGB3	0	genome.wustl.edu	37	5	140752364	140752364	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	140752364	140752364	C	A	SNP	PCDHGB3	NM_018924.2	human	genbank	58_37c	+1	reviewed	silent	c.2403	p.G801	0.005	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PITPNM3	0	genome.wustl.edu	37	17	6387550	6387550	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	6387550	6387550	G	T	SNP	PITPNM3	NM_031220.3	human	genbank	58_37c	-1	reviewed	missense	c.337	p.H113N	0.995	NULL	HMMPfam_DDHD,HMMPfam_LNS2,HMMSmart_SM00775,superfamily_HAD-like	-	no_errors
PNMAL1	0	genome.wustl.edu	37	19	46973547	46973549	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	TTC	TTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	19	46973547	46973549	TTC	-	DEL	PNMAL1	NM_018215.3	human	genbank	58_37c	-1	validated	in_frame_del	c.746_744	p.K248in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors
PRAMEF11	0	genome.wustl.edu	37	1	12885090	12885090	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	12885090	12885090	T	G	SNP	PRAMEF11	ENST00000331684	human	ensembl	58_37c	-1	known	missense	c.1021	p.N341H	0.001	superfamily_SSF52047	superfamily_SSF52047	-	no_errors
PRPF38A	0	genome.wustl.edu	37	1	52871446	52871446	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	52871446	52871446	G	C	SNP	PRPF38A	NM_032864.3	human	genbank	58_37c	+1	validated	missense	c.225	p.L75F	1.000	HMMPfam_PRP38	HMMPfam_PRP38	-	no_errors
PTDSS1	0	genome.wustl.edu	37	8	97274333	97274333	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	8	97274333	97274333	G	A	SNP	PTDSS1	NM_014754.1	human	genbank	58_37c	+1	provisional	missense	c.65	p.R22Q	1.000	NULL	HMMPfam_PSS	-	no_errors
PTPN13	0	genome.wustl.edu	37	4	87671758	87671758	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	4	87671758	87671758	C	G	SNP	PTPN13	NM_080685.2	human	genbank	58_37c	+1	reviewed	missense	c.2786	p.A929G	1.000	NULL	HMMPfam_Y_phosphatase,HMMSmart_PTPc,HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMSmart_KIND,HMMPfam_FERM_N,HMMPfam_FERM_C,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF101690,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
PTPRN2	0	genome.wustl.edu	37	7	157691399	157691399	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	157691399	157691399	G	T	SNP	PTPRN2	NM_002847.3	human	genbank	58_37c	-1	reviewed	missense	c.1754	p.S585Y	0.332	NULL	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
RLF	0	genome.wustl.edu	37	1	40702996	40702996	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	40702996	40702996	A	T	SNP	RLF	NM_012421.3	human	genbank	58_37c	+1	validated	missense	c.2622	p.E874D	0.001	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
RNF157	0	genome.wustl.edu	37	17	74150372	74150372	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	74150372	74150372	G	A	SNP	RNF157	NM_052916.2	human	genbank	58_37c	-1	validated	missense	c.1802	p.T601M	0.026	NULL	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
RP1L1	0	genome.wustl.edu	37	8	10466004	10466024	+	In_Frame_Del	DEL	CTGGGCCTCCCCTTCAGCCTC	CTGGGCCTCCCCTTCAGCCTC	-	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	CTGGGCCTCCCCTTCAGCCTC	CTGGGCCTCCCCTTCAGCCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	8	10466004	10466024	CTGGGCCTCCCCTTCAGCCTC	-	DEL	RP1L1	NM_178857.5	human	genbank	58_37c	-1	validated	in_frame_del	c.5604_5584	p.EAEGEAQ1862in_frame_del	0.008:0.002:0.001:0.002:0.005:0.007:0.009:0.026:0.027:0.000:0.001:0.016:0.003:0.000:0.000:0.000:0.000:0.000:0.000:0.000:0.000	HMMPfam_S-antigen	HMMPfam_DCX,HMMPfam_S-antigen,superfamily_SSF89837	-	no_errors
SCN7A	0	genome.wustl.edu	37	2	167273377	167273377	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	2	167273377	167273377	T	C	SNP	SCN7A	NM_002976.2	human	genbank	58_37c	-1	validated	missense	c.3254	p.Y1085C	0.588	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,superfamily_Voltage-gated potassium channels	-	no_errors
SLC39A12	0	genome.wustl.edu	37	10	18242296	18242296	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	10	18242296	18242296	G	A	SNP	SLC39A12	NM_001145195.1	human	genbank	58_37c	+1	validated	missense	c.91	p.A31T	0.000	NULL	HMMPfam_Zip	-	no_errors
STEAP1	0	genome.wustl.edu	37	7	89790307	89790307	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	7	89790307	89790307	G	A	SNP	STEAP1	NM_012449.2	human	genbank	58_37c	+1	reviewed	silent	c.273	p.L91	0.505	NULL	HMMPfam_Ferric_reduct	-	no_errors
TANC1	0	genome.wustl.edu	37	2	160043450	160043450	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	2	160043450	160043450	T	C	SNP	TANC1	NM_033394.2	human	genbank	58_37c	+1	validated	missense	c.2657	p.L886P	1.000	NULL	HMMPfam_TPR_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_TPR_2,HMMSmart_SM00028,superfamily_TPR-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
TMEM171	0	genome.wustl.edu	37	5	72424228	72424228	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	5	72424228	72424228	A	T	SNP	TMEM171	NM_173490.6	human	genbank	58_37c	+1	validated	missense	c.652	p.I218L	0.999	NULL	NULL	-	no_errors
TP53	0	genome.wustl.edu	37	17	7578263	7578263	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	17	7578263	7578263	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	nonsense	c.586	p.R196*	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
WDR13	0	genome.wustl.edu	37	X	48460302	48460302	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	X	48460302	48460302	C	T	SNP	WDR13	NM_017883.4	human	genbank	58_37c	+1	reviewed	missense	c.962	p.A321V	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZNF687	0	genome.wustl.edu	37	1	151263677	151263678	+	In_Frame_Ins	INS	-	-	ACA	novel	unknown	TCGA-E9-A1N9-01A-11D-A14G-09	TCGA-E9-A1N9-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2aa7a1db-40a5-421b-97ab-1031e6fa7f04	8ad40192-c404-4cfa-b30c-1e76452dadbc	1	151263677	151263678	-	ACA	INS	ZNF687	NM_020832.1	human	genbank	58_37c	+1	provisional	in_frame_ins	c.3706_3707	p.1238in_frame_insN	1.000:1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
