Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AOAH	0	genome.wustl.edu	37	7	36552787	36552788	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	7	36552787	36552788	-	G	INS	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1918_1917	p.Y639fs	0.000:0.000	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
ARHGEF10L	0	genome.wustl.edu	37	1	17975064	17975064	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	17975064	17975064	C	G	SNP	ARHGEF10L	NM_018125.3	human	genbank	58_37c	+1	validated	missense	c.2288	p.P763R	0.998	superfamily_PH domain-like	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),superfamily_WD40 repeat-like,superfamily_PH domain-like	-	no_errors
ATG5	0	genome.wustl.edu	37	6	106649944	106649944	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	106649944	106649944	G	A	SNP	ATG5	ENST00000360666	human	ensembl	58_37c	-1	known	missense	c.224	p.S75L	1.000	NULL	NULL	-	no_errors
ATP1B1	0	genome.wustl.edu	37	1	169094132	169094132	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	169094132	169094132	G	T	SNP	ATP1B1	NM_001677.3	human	genbank	58_37c	+1	reviewed	missense	c.237	p.Q79H	0.334	HMMPfam_Na_K-ATPase	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1,PatternScan_ATPASE_NA_K_BETA_2	-	no_errors
BCL2L11	0	genome.wustl.edu	37	2	111881520	111881520	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	111881520	111881520	A	C	SNP	BCL2L11	NM_138621.3	human	genbank	58_37c	+1	reviewed	silent	c.198	p.P66	0.955	NULL	HMMPfam_Bim_N,HMMPfam_Bclx_interact	-	no_errors
C20orf111	0	genome.wustl.edu	37	20	42831600	42831600	+	Splice_Site	SNP	C	C	A	rs3177803	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	20	42831600	42831600	C	A	SNP	C20orf111	NM_016470.6	human	genbank	58_37c	-1	provisional	splice_site	c.191+1	e2+1	1.000	-	-	-	no_errors
C2orf90	0	genome.wustl.edu	37	2	905663	905663	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	905663	905663	C	G	SNP	C2orf90	ENST00000434864	human	ensembl	58_37c	-1	known	missense	c.283	p.G95R	0.000	NULL	NULL	-	no_errors
C3orf34	0	genome.wustl.edu	37	3	196434456	196434456	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	3	196434456	196434456	C	A	SNP	C3orf34	NM_032898.3	human	genbank	58_37c	-1	validated	missense	c.470	p.C157F	1.000	NULL	NULL	-	no_errors
C6orf103	0	genome.wustl.edu	37	6	147049874	147049874	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	147049874	147049874	C	A	SNP	C6orf103	NM_024694.3	human	genbank	58_37c	+1	provisional	missense	c.2517	p.F839L	0.999	NULL	HMMPfam_IQ,HMMSmart_SM00230,superfamily_Cysteine proteinases	-	no_errors
C6orf146	0	genome.wustl.edu	37	6	4069649	4069649	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	4069649	4069649	C	T	SNP	C6orf146	NM_173563.1	human	genbank	58_37c	-1	predicted	missense	c.808	p.D270N	0.949	NULL	NULL	-	no_errors
CALR3	0	genome.wustl.edu	37	19	16606648	16606648	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	16606648	16606648	C	T	SNP	CALR3	NM_145046.3	human	genbank	58_37c	-1	validated	missense	c.107	p.R36Q	1.000	HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl	PatternScan_ER_TARGET,HMMPfam_Calreticulin,superfamily_ConA_like_lec_gl,superfamily_Calret_calnex_P,PatternScan_CALRETICULIN_1,PatternScan_CALRETICULIN_2	-	no_errors
CD1B	0	genome.wustl.edu	37	1	158298045	158298045	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	158298045	158298045	G	A	SNP	CD1B	NM_001764.2	human	genbank	58_37c	-1	reviewed	missense	c.983	p.S328L	0.062	NULL	HMMPfam_MHC_I,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
COL5A3	0	genome.wustl.edu	37	19	10097049	10097049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	10097049	10097049	G	A	SNP	COL5A3	NM_015719.3	human	genbank	58_37c	-1	reviewed	missense	c.2294	p.P765L	0.074	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMSmart_SM00210,HMMPfam_Collagen,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
CRYGC	0	genome.wustl.edu	37	2	208994365	208994365	+	Missense_Mutation	SNP	C	C	T	rs145041511	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	208994365	208994365	C	T	SNP	CRYGC	NM_020989.3	human	genbank	58_37c	-1	reviewed	missense	c.52	p.E18K	1.000	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like	HMMPfam_Crystall,HMMSmart_SM00247,superfamily_gamma-Crystallin-like	-	no_errors
DNAH14	0	genome.wustl.edu	37	1	225306960	225306960	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	225306960	225306960	T	G	SNP	DNAH14	NM_001373.1	human	genbank	58_37c	+1	validated	missense	c.4130	p.V1377G	1.000	HMMPfam_DHC_N2	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_RVT_thumb,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DST	0	genome.wustl.edu	37	6	56422155	56422173	+	Frame_Shift_Del	DEL	CAATTGACAAGGGCCCAAG	CAATTGACAAGGGCCCAAG	-	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	CAATTGACAAGGGCCCAAG	CAATTGACAAGGGCCCAAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	56422155	56422173	CAATTGACAAGGGCCCAAG	-	DEL	DST	NM_015548.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.6733_6715	p.L2239fs	1.000:0.995:0.997:0.970:0.230:1.000:1.000:0.999:1.000:1.000:0.938:1.000:1.000:0.988:1.000:1.000:0.649:1.000:1.000	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat	HMMPfam_Spectrin,HMMSmart_SM00054,HMMPfam_GAS2,HMMSmart_SM00243,HMMSmart_SM00150,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
DUSP5P	0	genome.wustl.edu	37	1	228786768	228786768	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	228786768	228786768	G	A	SNP	DUSP5P	NR_002834.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.994	-	-	-	pseudogene
EFCAB7	0	genome.wustl.edu	37	1	63999242	63999242	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	63999242	63999242	G	A	SNP	EFCAB7	NM_032437.2	human	genbank	58_37c	+1	validated	missense	c.604	p.E202K	0.998	NULL	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
EFCAB7	0	genome.wustl.edu	37	1	64011686	64011686	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	64011686	64011686	G	C	SNP	EFCAB7	NM_032437.2	human	genbank	58_37c	+1	validated	missense	c.904	p.V302L	0.997	NULL	HMMSmart_SM00054,PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13656	13656	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	MT	13656	13656	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	silent	c.1320	p.L440	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000236291	0	genome.wustl.edu	37	12	133032075	133032076	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	12	133032075	133032076	-	G	INS	ENSG00000236291	ENST00000446891	human	ensembl	58_37c	-1	known	frame_shift_ins	c.182_181	p.H61fs	0.045:0.052	NULL	NULL	-	no_start_codon:no_stop_codon
ENSG00000253049	0	genome.wustl.edu	37	3	3144607	3144607	+	RNA	SNP	A	A	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	3	3144607	3144607	A	C	SNP	ENSG00000253049	ENST00000517240	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.000	-	-	-	no_errors
EPB41L5	0	genome.wustl.edu	37	2	120903830	120903830	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	120903830	120903830	T	C	SNP	EPB41L5	NM_020909.3	human	genbank	58_37c	+1	validated	silent	c.1758	p.H586	1.000	NULL	HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
FAM186A	0	genome.wustl.edu	37	12	50746243	50746243	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	12	50746243	50746243	T	G	SNP	FAM186A	NM_001145475.1	human	genbank	58_37c	-1	provisional	missense	c.4372	p.T1458P	0.000	NULL	NULL	-	no_errors
FASTKD2	0	genome.wustl.edu	37	2	207638973	207638973	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	207638973	207638973	G	A	SNP	FASTKD2	NM_001136193.1	human	genbank	58_37c	+1	reviewed	missense	c.1279	p.E427K	1.000	NULL	HMMPfam_FAST_1,HMMPfam_FAST_2,HMMPfam_RAP	-	no_errors
FMN2	0	genome.wustl.edu	37	1	240370352	240370352	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	240370352	240370352	C	T	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	missense	c.2240	p.S747F	0.999	NULL	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
FMN2	0	genome.wustl.edu	37	1	240370552	240370552	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	240370552	240370552	C	T	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	missense	c.2440	p.P814S	0.626	HMMSmart_FH2,HMMPfam_Drf_FH1	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
FRG1	0	genome.wustl.edu	37	4	190876263	190876263	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	4	190876263	190876263	A	T	SNP	FRG1	NM_004477.2	human	genbank	58_37c	+1	reviewed	missense	c.389	p.D130V	1.000	superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	PatternScan_LIPOCALIN,superfamily_Actin-crosslinking proteins,HMMPfam_FRG1	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29623224	29623224	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	20	29623224	29623224	C	A	SNP	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	silent	c.36	p.V12	1.000	HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
GCNT4	0	genome.wustl.edu	37	5	74325091	74325091	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	5	74325091	74325091	G	A	SNP	GCNT4	NM_016591.2	human	genbank	58_37c	-1	validated	missense	c.772	p.P258S	0.877	HMMPfam_Branch	HMMPfam_Branch	-	no_errors
GOLGA6L6	0	genome.wustl.edu	37	15	20740459	20740461	+	In_Frame_Del	DEL	TCG	TCG	-	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	TCG	TCG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	15	20740459	20740461	TCG	-	DEL	GOLGA6L6	NM_001145004.1	human	genbank	58_37c	-1	inferred	in_frame_del	c.1291_1289	p.AK430in_frame_delE	0.966:0.963:0.960	NULL	NULL	-	no_errors
GPATCH4	0	genome.wustl.edu	37	1	156568029	156568030	+	In_Frame_Ins	INS	-	-	CCA	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	156568029	156568030	-	CCA	INS	GPATCH4	NM_015590.2	human	genbank	58_37c	-1	validated	in_frame_ins	c.251_250	p.84in_frame_insV	0.994:0.999	NULL	HMMPfam_G-patch,HMMSmart_SM00443	-	no_errors
GTDC1	0	genome.wustl.edu	37	2	144710400	144710400	+	Missense_Mutation	SNP	C	C	T	rs150712882	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	144710400	144710400	C	T	SNP	GTDC1	NM_001006636.3	human	genbank	58_37c	-1	validated	missense	c.1141	p.V381M	1.000	HMMPfam_Glycos_transf_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	HMMPfam_Glycos_transf_1,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase	-	no_errors
HPSE2	0	genome.wustl.edu	37	10	100219345	100219346	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	10	100219345	100219346	-	G	INS	HPSE2	NM_021828.4	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1765_1764	p.C588fs	1.000:1.000	NULL	HMMPfam_Glyco_hydro_79n	-	no_errors
LIG4	0	genome.wustl.edu	37	13	108862458	108862458	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	13	108862458	108862458	C	T	SNP	LIG4	NM_001098268.1	human	genbank	58_37c	-1	reviewed	missense	c.1159	p.E387K	1.000	HMMPfam_DNA_ligase_A_M,superfamily_SSF56091	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_DNA_ligase_A_N,HMMPfam_DNA_ligase_A_C,HMMPfam_DNA_ligase_A_M,PatternScan_DNA_LIGASE_A2,PatternScan_DNA_LIGASE_A1,superfamily_SSF56091	-	no_errors
LOC100133636	0	genome.wustl.edu	37	9	20913144	20913145	+	Frame_Shift_Ins	INS	-	-	AC	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	9	20913144	20913145	-	AC	INS	LOC100133636	XM_001716178.2	human	genbank	58_37c	-1	model	frame_shift_ins	c.1953_1952	p.C652fs	0.001:0.003	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon
LOC100289180	0	genome.wustl.edu	37	2	65571979	65571979	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	65571979	65571979	G	T	SNP	LOC100289180	XM_002342220.1	human	genbank	58_37c	+1	model	nonsense	c.103	p.G35*	1.000	NULL	NULL	-	no_errors
LOC100291105	0	genome.wustl.edu	37	20	26211021	26211022	+	Frame_Shift_Del	DEL	TT	TT	-	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	TT	TT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	20	26211021	26211022	TT	-	DEL	LOC100291105	XM_002348034.1	human	genbank	58_37c	-1	model	frame_shift_del	c.312_311	p.E104fs	0.000:0.000	NULL	NULL	-	no_start_codon:pseudogene
LOC442421	0	genome.wustl.edu	37	9	66500592	66500592	+	RNA	SNP	C	C	T	rs28712882	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	9	66500592	66500592	C	T	SNP	LOC442421	NR_024496.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.325	-	-	-	no_errors
LOC642236	0	genome.wustl.edu	37	9	68433564	68433564	+	RNA	SNP	C	C	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	9	68433564	68433564	C	A	SNP	LOC642236	XR_041085.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
LOC644265	0	genome.wustl.edu	37	2	104240264	104240264	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	104240264	104240264	C	T	SNP	LOC644265	XM_927443.2	human	genbank	58_37c	+1	model	silent	c.231	p.Y77	0.011	HMMPfam_F_actin_cap_B,superfamily_Subunits of heterodimeric actin filament capping protein Capz	HMMPfam_F_actin_cap_B,superfamily_Subunits of heterodimeric actin filament capping protein Capz	-	no_errors
MASP1	0	genome.wustl.edu	37	3	186970996	186970996	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	3	186970996	186970996	C	T	SNP	MASP1	NM_139125.3	human	genbank	58_37c	-1	reviewed	silent	c.852	p.S284	0.000	HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_CUB,HMMSmart_CUB,superfamily_CUB,HMMPfam_Trypsin,HMMSmart_Tryp_SPc,HMMSmart_EGF_CA,superfamily_Pept_Ser_Cys,PatternScan_EGF_2,superfamily_Complement_control_module,PatternScan_EGF_CA,PatternScan_TRYPSIN_SER,superfamily_SSF57196	-	no_errors
MED25	0	genome.wustl.edu	37	19	50335258	50335258	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	50335258	50335258	C	T	SNP	MED25	NM_030973.3	human	genbank	58_37c	+1	reviewed	silent	c.1296	p.Y432	0.703	NULL	NULL	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195505811	195505811	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	3	195505811	195505811	T	C	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.12256	p.T4086A	0.012	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
MYH14	0	genome.wustl.edu	37	19	50735219	50735219	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	50735219	50735219	C	T	SNP	MYH14	NM_001077186.1	human	genbank	58_37c	+1	reviewed	missense	c.1006	p.R336W	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NCOA6	0	genome.wustl.edu	37	20	33370003	33370003	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	20	33370003	33370003	G	C	SNP	NCOA6	NM_014071.2	human	genbank	58_37c	-1	reviewed	missense	c.156	p.F52L	1.000	NULL	NULL	-	no_errors
NCOR1	0	genome.wustl.edu	37	17	16029456	16029457	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	17	16029456	16029457	-	T	INS	NCOR1	NM_006311.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.1574_1573	p.T525fs	1.000:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NCRNA00164	0	genome.wustl.edu	37	2	133015505	133015505	+	RNA	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	133015505	133015505	G	A	SNP	NCRNA00164	NR_027020.2	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.040	-	-	-	pseudogene
NUMB	0	genome.wustl.edu	37	14	73753872	73753872	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	14	73753872	73753872	T	A	SNP	NUMB	NM_001005743.1	human	genbank	58_37c	-1	reviewed	missense	c.601	p.T201S	1.000	NULL	HMMPfam_PID,HMMSmart_SM00462,HMMPfam_NumbF,superfamily_PH domain-like	-	no_errors
NUP133	0	genome.wustl.edu	37	1	229622242	229622242	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	229622242	229622242	C	G	SNP	NUP133	NM_018230.2	human	genbank	58_37c	-1	reviewed	missense	c.1376	p.G459A	0.948	HMMPfam_Nup133_N	HMMPfam_Nup133,HMMPfam_Nup133_N	-	no_errors
P2RY8	0	genome.wustl.edu	37	X	1585028	1585028	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	X	1585028	1585028	C	A	SNP	P2RY8	NM_178129.4	human	genbank	58_37c	-1	reviewed	missense	c.424	p.A142S	0.033	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PCNXL2	0	genome.wustl.edu	37	1	233353644	233353644	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	1	233353644	233353644	C	T	SNP	PCNXL2	NM_014801.3	human	genbank	58_37c	-1	provisional	splice_site	c.2691+1	e12+1	1.000	-	-	-	no_errors
PLA2G7	0	genome.wustl.edu	37	6	46672386	46672386	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	46672386	46672386	C	T	SNP	PLA2G7	NM_005084.3	human	genbank	58_37c	-1	reviewed	missense	c.1237	p.D413N	0.670	HMMPfam_PAF-AH_p_II,superfamily_SSF53474	HMMPfam_PAF-AH_p_II,PatternScan_LIPASE_SER,superfamily_SSF53474	-	no_errors
PLA2G7	0	genome.wustl.edu	37	6	46678354	46678354	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	6	46678354	46678354	C	T	SNP	PLA2G7	NM_005084.3	human	genbank	58_37c	-1	reviewed	silent	c.705	p.L235	0.135	HMMPfam_PAF-AH_p_II,superfamily_SSF53474	HMMPfam_PAF-AH_p_II,PatternScan_LIPASE_SER,superfamily_SSF53474	-	no_errors
RAB19	0	genome.wustl.edu	37	7	140107556	140107556	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	7	140107556	140107556	T	G	SNP	RAB19	NM_001008749.2	human	genbank	58_37c	+1	validated	missense	c.110	p.F37C	1.000	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540	-	no_errors
RANBP2	0	genome.wustl.edu	37	2	109347330	109347330	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	2	109347330	109347330	G	A	SNP	RANBP2	NM_006267.4	human	genbank	58_37c	+1	reviewed	missense	c.241	p.E81K	1.000	HMMPfam_TPR_1,superfamily_SSF48452	HMMPfam_Ran_BP1,HMMSmart_RanBD,HMMPfam_TPR_1,HMMPfam_zf-RanBP,HMMSmart_ZnF_RBZ,PatternScan_ZF_RANBP2_1,HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_CSA_PPIase,superfamily_SSF48452,superfamily_SSF50729	-	no_errors
RECQL	0	genome.wustl.edu	37	12	21630747	21630747	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	12	21630747	21630747	A	T	SNP	RECQL	NM_002907.3	human	genbank	58_37c	-1	reviewed	missense	c.857	p.L286Q	1.000	HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SALL1	0	genome.wustl.edu	37	16	51174727	51174727	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	16	51174727	51174727	C	T	SNP	SALL1	NM_002968.2	human	genbank	58_37c	-1	reviewed	missense	c.1406	p.R469H	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
SLCO2A1	0	genome.wustl.edu	37	3	133664056	133664056	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	3	133664056	133664056	G	A	SNP	SLCO2A1	ENST00000481359	human	ensembl	58_37c	-1	known	missense	c.1154	p.A385V	1.000	HMMPfam_OATP	HMMPfam_OATP,superfamily_MFS general substrate transporter	-	no_errors
SMO	0	genome.wustl.edu	37	7	128846115	128846115	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	7	128846115	128846115	A	C	SNP	SMO	NM_005631.3	human	genbank	58_37c	+1	provisional	missense	c.1045	p.T349P	1.000	HMMPfam_Frizzled	superfamily_Frizzled cysteine-rich domain,HMMPfam_Frizzled,HMMPfam_Fz,HMMSmart_SM00063	-	no_errors
STK35	0	genome.wustl.edu	37	20	2097463	2097463	+	Silent	SNP	T	T	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	20	2097463	2097463	T	C	SNP	STK35	NM_080836.3	human	genbank	58_37c	+1	reviewed	silent	c.645	p.I215	0.998	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
TMEM143	0	genome.wustl.edu	37	19	48836505	48836505	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	48836505	48836505	G	T	SNP	TMEM143	NM_018273.2	human	genbank	58_37c	-1	provisional	missense	c.1351	p.Q451K	0.193	NULL	NULL	-	no_errors
TMPRSS9	0	genome.wustl.edu	37	19	2416579	2416579	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	2416579	2416579	C	T	SNP	TMPRSS9	NM_182973.1	human	genbank	58_37c	+1	provisional	missense	c.1687	p.L563F	0.452	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
TP53	0	genome.wustl.edu	37	17	7579349	7579349	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	17	7579349	7579349	A	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.338	p.F113C	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TPRX1	0	genome.wustl.edu	37	19	48305666	48305666	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	48305666	48305666	A	C	SNP	TPRX1	NM_198479.2	human	genbank	58_37c	-1	validated	missense	c.602	p.V201G	0.000	NULL	NULL	-	no_errors
TPRX1	0	genome.wustl.edu	37	19	48305670	48305670	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	19	48305670	48305670	A	G	SNP	TPRX1	NM_198479.2	human	genbank	58_37c	-1	validated	missense	c.598	p.S200P	0.000	NULL	NULL	-	no_errors
TSPAN3	0	genome.wustl.edu	37	15	77346562	77346562	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	15	77346562	77346562	G	T	SNP	TSPAN3	NM_005724.5	human	genbank	58_37c	-1	reviewed	missense	c.390	p.N130K	1.000	superfamily_Tetraspanin,HMMPfam_Tetraspannin	superfamily_Tetraspanin,HMMPfam_Tetraspannin,PatternScan_TM4_1	-	no_errors
VCAN	0	genome.wustl.edu	37	5	82834037	82834037	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	5	82834037	82834037	G	T	SNP	VCAN	NM_004385.4	human	genbank	58_37c	+1	reviewed	nonsense	c.5215	p.E1739*	0.001	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_Xlink,HMMSmart_SM00445,PatternScan_LINK_1,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMSmart_SM00179,HMMSmart_SM00409,HMMPfam_EGF,HMMSmart_SM00181,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_V-set,superfamily_Complement control module/SCR domain,superfamily_C-type lectin-like,PatternScan_EGF_CA,PatternScan_C_TYPE_LECTIN_1,superfamily_Immunoglobulin,superfamily_EGF/Laminin	-	no_errors
VPS13C	0	genome.wustl.edu	37	15	62277090	62277090	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NF-01A-11D-A14G-09	TCGA-E9-A1NF-10A-01D-A14G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	cd428bec-fc31-4d2d-9e6c-c8f30608d797	edffc09c-201a-44d1-b758-5d9d64f5f6a6	15	62277090	62277090	G	C	SNP	VPS13C	NM_020821.1	human	genbank	58_37c	-1	validated	missense	c.1687	p.Q563E	0.354	NULL	HMMPfam_DUF1162	-	no_errors
