Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AOAH	0	genome.wustl.edu	37	7	36552787	36552788	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	7	36552787	36552788	-	G	INS	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1918_1917	p.Y639fs	0.000:0.000	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
C12orf12	0	genome.wustl.edu	37	12	91347561	91347581	+	In_Frame_Del	DEL	TCTTCCTCCTCATCTTCGACC	TCTTCCTCCTCATCTTCGACC	-	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	TCTTCCTCCTCATCTTCGACC	TCTTCCTCCTCATCTTCGACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	12	91347561	91347581	TCTTCCTCCTCATCTTCGACC	-	DEL	C12orf12	NM_152638.2	human	genbank	58_37c	-1	predicted	in_frame_del	c.959_939	p.VEDEEEE314in_frame_del	0.027:0.021:0.000:0.002:0.025:0.018:0.156:0.160:0.021:0.012:0.013:0.002:0.027:0.015:0.001:0.001:0.003:0.000:0.027:0.070:0.079	NULL	NULL	-	no_errors
DNAH3	0	genome.wustl.edu	37	16	21170742	21170742	+	Silent	SNP	G	G	C	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	16	21170742	21170742	G	C	SNP	DNAH3	NM_017539.1	human	genbank	58_37c	-1	provisional	silent	c.21	p.L7	0.000	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,superfamily_Prefoldin,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ENSG00000231360	0	genome.wustl.edu	37	1	29845188	29845190	+	In_Frame_Del	DEL	TCT	TCT	-	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	1	29845188	29845190	TCT	-	DEL	ENSG00000231360	ENST00000455342	human	ensembl	58_37c	-1	known	in_frame_del	c.320_318	p.E110in_frame_del	0.010:0.014:0.016	NULL	NULL	-	no_start_codon:no_stop_codon
IL11RA	0	genome.wustl.edu	37	9	34655661	34655661	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	9	34655661	34655661	G	A	SNP	IL11RA	NM_001142784.1	human	genbank	58_37c	+1	reviewed	missense	c.160	p.G54R	0.998	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	PatternScan_HEMATOPO_REC_L_F3,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC729057	0	genome.wustl.edu	37	22	16123164	16123164	+	RNA	SNP	C	C	A	rs5746346	by2Hit2Allele	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	22	16123164	16123164	C	A	SNP	LOC729057	XR_042044.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	no_errors
MUC12	0	genome.wustl.edu	37	7	100641798	100641798	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	7	100641798	100641798	C	G	SNP	MUC12	ENST00000379442	human	ensembl	58_37c	+1	known	missense	c.8383	p.P2795A	0.002	NULL	HMMPfam_SEA,HMMSmart_SEA,PatternScan_EGF_1,PatternScan_EGF_2	-	no_errors
NBPF15	0	genome.wustl.edu	37	1	148579636	148579636	+	Missense_Mutation	SNP	T	T	C	rs80088922	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	1	148579636	148579636	T	C	SNP	NBPF15	NM_173638.3	human	genbank	58_37c	+1	validated	missense	c.206	p.F69S	0.009	NULL	HMMPfam_DUF1220	-	no_errors
NTRK1	0	genome.wustl.edu	37	1	156834219	156834219	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	1	156834219	156834219	C	G	SNP	NTRK1	NM_002529.3	human	genbank	58_37c	+1	reviewed	missense	c.286	p.L96V	1.000	superfamily_L domain-like	HMMSmart_SM00082,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_II,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
PSG11	0	genome.wustl.edu	37	19	43514108	43514108	+	Splice_Site	SNP	A	A	C	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	19	43514108	43514108	A	C	SNP	PSG11	NM_002785.2	human	genbank	58_37c	-1	validated	splice_site	c.1008+2	e5+2	0.090	-	-	-	no_errors
TTC14	0	genome.wustl.edu	37	3	180324055	180324055	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	3	180324055	180324055	T	C	SNP	TTC14	NM_133462.3	human	genbank	58_37c	+1	validated	missense	c.944	p.V315A	1.000	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,superfamily_Nucleic acid-binding proteins,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
TTN	0	genome.wustl.edu	37	2	179635029	179635029	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	2	179635029	179635029	T	A	SNP	TTN	NM_133379.3	human	genbank	58_37c	-1	reviewed	missense	c.8399	p.K2800M	1.000	HMMPfam_I-set,superfamily_SSF48726	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
TXK	0	genome.wustl.edu	37	4	48091792	48091792	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	4	48091792	48091792	T	G	SNP	TXK	NM_003328.2	human	genbank	58_37c	-1	validated	missense	c.759	p.L253F	0.968	NULL	HMMPfam_SH2,HMMSmart_SH2,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF55550	-	no_errors
USP36	0	genome.wustl.edu	37	17	76798549	76798554	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	unknown	TCGA-EW-A1P7-01A-21D-A142-09	TCGA-EW-A1P7-10A-01D-A142-09	TTTTTC	TTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	402abf40-5a01-467d-a5be-b9101743f34b	4b8b9e5a-517f-4c80-862a-032f78617cce	17	76798549	76798554	TTTTTC	-	DEL	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.178:0.173:0.043:0.038:0.100:0.107	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
