Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
VPS16	64601	genome.wustl.edu	36	20	2795206	2795206	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	2795206	2795206	VPS16	20	G	G	A	34
MXRA5	25878	genome.wustl.edu	36	X	3251454	3251454	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	3251454	3251454	MXRA5	23	C	C	T	17
CAMTA2	23125	genome.wustl.edu	36	17	4824431	4824431	+	Missense_Mutation	SNP	G	T	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	4824431	4824431	CAMTA2	17	G	T	T	42
MUC16	94025	genome.wustl.edu	36	19	8934638	8934638	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	8934638	8934638	MUC16	19	C	C	T	31
PTCHD2	57540	genome.wustl.edu	36	1	11518272	11518272	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	11518272	11518272	PTCHD2	1	C	C	T	22
BNC2	54796	genome.wustl.edu	36	9	16427049	16427049	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	16427049	16427049	BNC2	9	T	T	C	59
KLHDC7A	127707	genome.wustl.edu	36	1	18680771	18680771	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	18680771	18680771	KLHDC7A	1	G	G	A	47
MLLT3	4300	genome.wustl.edu	36	9	20404188	20404188	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	20404188	20404188	MLLT3	9	T	T	C	64
CD93	22918	genome.wustl.edu	36	20	23013457	23013457	+	Nonsense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	23013457	23013457	CD93	20	C	C	T	21
ENSG00000196593		genome.wustl.edu	36	13	23418186	23418186	+	Missense_Mutation	SNP	G	A	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	A	A	G	A	Unknown	Valid	LOH	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	23418186	23418186	ENSG00000196593	13	G	A	A	41
ZNF512	84450	genome.wustl.edu	36	2	27674544	27674544	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	27674544	27674544	ZNF512	2	G	G	T	45
OVCH1	341350	genome.wustl.edu	36	12	29483541	29483541	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	29483541	29483541	OVCH1	12	C	C	A	21
C20orf160	140706	genome.wustl.edu	36	20	30074124	30074124	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	30074124	30074124	C20orf160	20	G	G	T	41
FAM47C	442444	genome.wustl.edu	36	X	36938205	36938205	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	A	A					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	36938205	36938205	FAM47C	23	A	A	G	10
TAF8	129685	genome.wustl.edu	36	6	42133163	42133163	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C					Unknown	Unknown	Somatic	4	Capture		1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	42133163	42133163	TAF8	6	C	C	T	22
MAOB	4129	genome.wustl.edu	36	X	43537718	43537718	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	43537718	43537718	MAOB	23	A	A	T	3
DYRK1B	9149	genome.wustl.edu	36	19	45013171	45013171	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	45013171	45013171	DYRK1B	19	G	G	A	45
ABCC12	94160	genome.wustl.edu	36	16	46698736	46698736	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	46698736	46698736	ABCC12	16	G	G	A	40
RB1	5925	genome.wustl.edu	36	13	47937375	47937375	+	Nonsense_Mutation	SNP	C	T	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Nonsense_Mutation	SNP	47937375	47937375	RB1	13	C	T	T	31
RHOA	387	genome.wustl.edu	36	3	49380916	49380916	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	49380916	49380916	RHOA	3	C	C	T	32
CENPQ	55166	genome.wustl.edu	36	6	49547843	49547843	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	49547843	49547843	CENPQ	6	A	A	G	9
ATP9A	10079	genome.wustl.edu	36	20	49726099	49726099	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	A	A	A	T	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	49726099	49726099	ATP9A	20	A	A	T	16
SAE1	10055	genome.wustl.edu	36	19	52364991	52364991	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	52364991	52364991	SAE1	19	G	G	A	38
NLRP8	126205	genome.wustl.edu	36	19	61157935	61157935	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	61157935	61157935	NLRP8	19	C	C	T	19
PTPRG	5793	genome.wustl.edu	36	3	61709623	61709623	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	61709623	61709623	PTPRG	3	C	C	T	19
TTYH2	94015	genome.wustl.edu	36	17	69760048	69760048	+	Silent	SNP	C	T	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	T	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	69760048	69760048	TTYH2	17	C	T	T	23
ZFC3H1	196441	genome.wustl.edu	36	12	70322513	70322513	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	70322513	70322513	ZFC3H1	12	T	T	C	49
SGK269	79834	genome.wustl.edu	36	15	75212886	75212886	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	75212886	75212886	SGK269	15	C	C	T	20
ENSG00000204562		genome.wustl.edu	36	9	83722308	83722308	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	G	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	83722308	83722308	ENSG00000204562	9	C	C	G	29
MYBPHL	343263	genome.wustl.edu	36	1	109641076	109641076	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	109641076	109641076	MYBPHL	1	C	C	T	23
FAM40A	85369	genome.wustl.edu	36	1	110390856	110390856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	110390856	110390856	FAM40A	1	C	C	T	25
DTX1	1840	genome.wustl.edu	36	12	112019056	112019056	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	112019056	112019056	DTX1	12	G	G	A	38
UGT8	7368	genome.wustl.edu	36	4	115763968	115763968	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	115763968	115763968	UGT8	4	C	C	T	26
DNM1	1759	genome.wustl.edu	36	9	130052309	130052309	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	130052309	130052309	DNM1	9	G	G	A	39
HHIP	64399	genome.wustl.edu	36	4	145852675	145852675	+	Splice_Site_SNP	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Splice_Site_SNP	SNP	145852675	145852675	HHIP	4	T	T	C	57
PSMB4	5692	genome.wustl.edu	36	1	149639206	149639206	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	T	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	149639206	149639206	PSMB4	1	G	G	T	37
FLG	2312	genome.wustl.edu	36	1	150542311	150542311	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	150542311	150542311	FLG	1	C	C	T	23
CENPF	1063	genome.wustl.edu	36	1	212882145	212882145	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	A	A	A	G	A	A	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	212882145	212882145	CENPF	1	A	A	G	2
COL6A3	1293	genome.wustl.edu	36	2	237950203	237950203	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	T	T	T	C	T	T	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	237950203	237950203	COL6A3	2	T	T	C	59
PGBD2	267002	genome.wustl.edu	36	1	247178593	247178593	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	C	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	247178593	247178593	PGBD2	1	G	G	C	44
TP53	7157	genome.wustl.edu	36	17	7519257	7519261	+	Frame_Shift_Del	DEL	ATCTT	ATCTT	-	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	ATCTT	ATCTT	-	-	ATCTT	-	Unknown	Valid	LOH	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	7519257	7519261	TP53	17	ATCTT	ATCTT	-	8
LOC729794		genome.wustl.edu	36	10	124479050	124479050	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	A	G	G	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Silent	SNP	124479050	124479050	LOC729794	10	G	G	A	46
CPXM2	119587	genome.wustl.edu	36	10	125496310	125496310	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	T	C	C	Unknown	Valid	Somatic	4	Capture	454_PCR_WGA	1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	125496310	125496310	CPXM2	10	C	C	T	23
AKD1	0	genome.wustl.edu	36	6	110102103	110102103	+	Missense_Mutation	SNP	G	G	T		Unknown	TCGA-10-0933-01	TCGA-10-0933-11	G	G	G	T	G	G	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Missense_Mutation	SNP	110102103	110102103	AKD1	6	G	G	T	37
RCE1	9986	genome.wustl.edu	36	11	66367857	66367858	+	Frame_Shift_Del	DEL	CA	CA	-		Unknown	TCGA-10-0933-01	TCGA-10-0933-11	CA	CA	CA	-	CA	CA	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	66367857	66367858	RCE1	11	CA	CA	-	21
ZFAND2A	90637	genome.wustl.edu	36	7	1159339	1159339	+	Frame_Shift_Del	DEL	C	C	-		Unknown	TCGA-10-0933-01	TCGA-10-0933-11	C	C	C	-	C	C	Unknown	Valid	Somatic	PhaseIII	Capture		1	dbGAP	Illumina GAIIx	WashU	Frame_Shift_Del	DEL	1159339	1159339	ZFAND2A	7	C	C	-	25
