Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
S1PR1	1901	broad.mit.edu	36	1	101477918	101477918	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101477918	101477918	S1PR1	1	G	G	A	40
SPRR2A	6700	broad.mit.edu	36	1	151295623	151295623	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	151295623	151295623	SPRR2A	1	G	G	T	46
LGR6	59352	broad.mit.edu	36	1	200542619	200542619	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	200542619	200542619	LGR6	1	C	C	T	27
SYT2	127833	broad.mit.edu	36	1	200838172	200838172	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	200838172	200838172	SYT2	1	C	C	T	23
FMN2	56776	broad.mit.edu	36	1	238438545	238438545	+	Silent	SNP	C	C	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	238438545	238438545	FMN2	1	C	C	A	28
ZMIZ1	57178	broad.mit.edu	36	10	80722051	80722051	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	80722051	80722051	ZMIZ1	10	G	G	A	34
LRIT2	340745	broad.mit.edu	36	10	85971779	85971779	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	85971779	85971779	LRIT2	10	G	G	A	43
SF1	7536	broad.mit.edu	36	11	64293596	64293596	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	64293596	64293596	SF1	11	C	C	T	24
CACNA1C	775	broad.mit.edu	36	12	2586462	2586462	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	2586462	2586462	CACNA1C	12	A	A	T	2
SPTLC2	9517	broad.mit.edu	36	14	77057633	77057633	+	Silent	SNP	T	T	G	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	77057633	77057633	SPTLC2	14	T	T	G	55
NRXN3	9369	broad.mit.edu	36	14	79199991	79199991	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	79199991	79199991	NRXN3	14	G	G	A	39
DIO3	1735	broad.mit.edu	36	14	101097957	101097957	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101097957	101097957	DIO3	14	A	A	T	12
CSPG4	1464	broad.mit.edu	36	15	73766872	73766872	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	73766872	73766872	CSPG4	15	C	C	T	19
ADCY9	115	broad.mit.edu	36	16	3982225	3982225	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	3982225	3982225	ADCY9	16	C	C	T	23
GP2	2813	broad.mit.edu	36	16	20242894	20242894	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	20242894	20242894	GP2	16	G	G	T	39
TP53	7157	broad.mit.edu	36	17	7519167	7519167	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7519167	7519167	TP53	17	T	T	C	57
KRT33A	3883	broad.mit.edu	36	17	36756723	36756724	+	Missense_Mutation	DNP	CC	CC	AG	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	36756723	36756724	KRT33A	17	CC	CC	AG	18
HSF5	124535	broad.mit.edu	36	17	53912476	53912476	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	53912476	53912476	HSF5	17	G	G	A	43
JMJD6	23210	broad.mit.edu	36	17	72233477	72233477	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72233477	72233477	JMJD6	17	C	C	A	23
ASXL3	80816	broad.mit.edu	36	18	29572453	29572453	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	29572453	29572453	ASXL3	18	G	G	A	43
RAVER1	125950	broad.mit.edu	36	19	10295238	10295238	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	10295238	10295238	RAVER1	19	G	G	A	38
PTPRH	5794	broad.mit.edu	36	19	60401866	60401866	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	60401866	60401866	PTPRH	19	C	C	T	30
COMMD1	150684	broad.mit.edu	36	2	61986493	61986493	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	61986493	61986493	COMMD1	2	T	T	A	56
SAP130	79595	broad.mit.edu	36	2	128429381	128429381	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	128429381	128429381	SAP130	2	G	G	T	44
ARHGEF4	50649	broad.mit.edu	36	2	131502028	131502028	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	131502028	131502028	ARHGEF4	2	C	C	T	19
DOCK10	55619	broad.mit.edu	36	2	225347989	225347989	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	225347989	225347989	DOCK10	2	G	G	A	39
NGEF	25791	broad.mit.edu	36	2	233461000	233461000	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	233461000	233461000	NGEF	2	T	T	C	56
DOCK3	1795	broad.mit.edu	36	3	51374417	51374417	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	51374417	51374417	DOCK3	3	G	G	C	47
MME	4311	broad.mit.edu	36	3	156315588	156315588	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	156315588	156315588	MME	3	G	G	T	40
RAI14	26064	broad.mit.edu	36	5	34860034	34860034	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	34860034	34860034	RAI14	5	C	C	T	28
HIST1H2BH	8345	broad.mit.edu	36	6	26359862	26359862	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26359862	26359862	HIST1H2BH	6	C	C	T	24
USP49	25862	broad.mit.edu	36	6	41882255	41882255	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	41882255	41882255	USP49	6	G	G	A	38
AARS2	57505	broad.mit.edu	36	6	44380903	44380903	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44380903	44380903	AARS2	6	C	C	T	23
C6orf174	387104	broad.mit.edu	36	6	127838890	127838890	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	127838890	127838890	C6orf174	6	C	C	G	25
SDK1	221935	broad.mit.edu	36	7	4083181	4083181	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	4083181	4083181	SDK1	7	C	C	T	19
OPN1SW	611	broad.mit.edu	36	7	128203051	128203051	+	Nonsense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	128203051	128203051	OPN1SW	7	A	A	T	12
AKR1B1	231	broad.mit.edu	36	7	133786091	133786091	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	133786091	133786091	AKR1B1	7	G	G	A	39
CSMD3	114788	broad.mit.edu	36	8	113731645	113731646	+	Missense_Mutation	DNP	TG	TG	AT	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	113731645	113731646	CSMD3	8	TG	TG	AT	55
MYC	4609	broad.mit.edu	36	8	128820338	128820338	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	128820338	128820338	MYC	8	C	C	T	32
DGKK	139189	broad.mit.edu	36	X	50139449	50139449	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	50139449	50139449	DGKK	23	C	C	G	25
MAGED1	9500	broad.mit.edu	36	X	51656376	51656376	+	Silent	SNP	C	C	G	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	51656376	51656376	MAGED1	23	C	C	G	32
ZDHHC15	158866	broad.mit.edu	36	X	74566512	74566512	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	74566512	74566512	ZDHHC15	23	G	G	A	43
PACS1	55690	broad.mit.edu	36	11	65740818	65740830	+	Splice_Site_Del	DEL	CAAGGGTGAGCCT	-	CAAGGGTGAGCCT	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Splice_Site_Del	DEL	65740818	65740830	PACS1	11	CAAGGGTGAGCCT	-	CAAGGGTGAGCCT	17
LRWD1	222229	broad.mit.edu	36	7	101893502	101893515	+	Splice_Site_Del	DEL	CGGTAAGTGGGAGC	-	CGGTAAGTGGGAGC	novel	Unknown	TCGA-24-2261-01	TCGA-24-2261-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	Splice_Site_Del	DEL	101893502	101893515	LRWD1	7	CGGTAAGTGGGAGC	-	CGGTAAGTGGGAGC	19
