Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7383194	7383194	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AACS	65985	broad.mit.edu	37	12	125619409	125619409	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS2	57505	broad.mit.edu	37	6	44273574	44273574	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48547445	48547445	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA1	19	broad.mit.edu	37	9	107618338	107618338	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA3	21	broad.mit.edu	37	16	2333253	2333253	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94473873	94473873	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66928445	66928445	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA9	10350	broad.mit.edu	37	17	66979867	66979867	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC12	94160	broad.mit.edu	37	16	48119591	48119591	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC1	4363	broad.mit.edu	37	16	16130398	16130398	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC5	10057	broad.mit.edu	37	3	183695484	183695484	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17424144	17424144	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17491753	17491753	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	39973581	39973581	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119028871	119028871	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD2	11057	broad.mit.edu	37	15	89679133	89679133	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABHD4	63874	broad.mit.edu	37	14	23079849	23079849	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABT1	29777	broad.mit.edu	37	6	26598745	26598745	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP3	116983	broad.mit.edu	37	1	1233224	1233224	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER3	55331	broad.mit.edu	37	11	76709817	76709817	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE	1636	broad.mit.edu	37	17	61557706	61557706	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOX3	8310	broad.mit.edu	37	4	8390969	8390969	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACP2	53	broad.mit.edu	37	11	47264484	47264484	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACPP	55	broad.mit.edu	37	3	132036162	132036162	+	5'Flank	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACRBP	84519	broad.mit.edu	37	12	6749203	6749203	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL5	51703	broad.mit.edu	37	10	114171314	114171314	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN1	87	broad.mit.edu	37	14	69360496	69360496	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM2	2515	broad.mit.edu	37	8	39695544	39695544	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106088155	106088155	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106092257	106092257	+	RNA	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106134554	106134554	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106714676	106714676	+	Splice_Site	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106791255	106791255	+	RNA	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106812083	106812083	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM8	101	broad.mit.edu	37	10	135086366	135086366	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMDEC1	27299	broad.mit.edu	37	8	24261644	24261644	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33576960	33576960	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33637612	33637612	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5146429	5146429	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS19	171019	broad.mit.edu	37	5	129030332	129030332	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS2	9509	broad.mit.edu	37	5	178552120	178552120	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS4	9507	broad.mit.edu	37	1	161160829	161160830	+	3'UTR	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28305100	28305100	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS9	56999	broad.mit.edu	37	3	64619165	64619165	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL2	9719	broad.mit.edu	37	9	136402004	136402004	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1279783	1279783	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY10	55811	broad.mit.edu	37	1	167780114	167780114	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY2	108	broad.mit.edu	37	5	7727279	7727279	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123038571	123038571	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY9	115	broad.mit.edu	37	16	4164582	4164582	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100242433	100242433	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFM	173	broad.mit.edu	37	4	74357558	74357558	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFTPH	54812	broad.mit.edu	37	2	64794785	64794785	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP1	116987	broad.mit.edu	37	2	236957706	236957706	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT3	56894	broad.mit.edu	37	21	45400903	45400903	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT3	56894	broad.mit.edu	37	21	45402018	45402018	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPS	8540	broad.mit.edu	37	2	178378551	178378551	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGTR1	185	broad.mit.edu	37	3	148459408	148459408	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241813547	241813547	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIF1L	83543	broad.mit.edu	37	9	133990102	133990102	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR7A3	22977	broad.mit.edu	37	1	19610431	19610431	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105250977	105250977	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALCAM	214	broad.mit.edu	37	3	105268830	105268830	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1B1	219	broad.mit.edu	37	9	38396249	38396249	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH3A2	224	broad.mit.edu	37	17	19554822	19554822	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH9A1	223	broad.mit.edu	37	1	165651442	165651442	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH9A1	223	broad.mit.edu	37	1	165667628	165667628	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG10	84920	broad.mit.edu	37	12	34179903	34179903	+	3'UTR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110951500	110951502	+	In_Frame_Del	DEL	ACT	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG13	79868	broad.mit.edu	37	X	110996020	110996020	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	30143288	30143288	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALMS1	7840	broad.mit.edu	37	2	73679045	73679045	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOX5	240	broad.mit.edu	37	10	45939045	45939045	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK1	80216	broad.mit.edu	37	4	113279450	113279450	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56205026	56205026	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMMECR1L	83607	broad.mit.edu	37	2	128628438	128628438	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPD1	270	broad.mit.edu	37	1	115218017	115218017	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMPH	273	broad.mit.edu	37	7	38424511	38424511	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANAPC4	29945	broad.mit.edu	37	4	25398597	25398597	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT2	285	broad.mit.edu	37	8	6389855	6389855	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT4	51378	broad.mit.edu	37	20	853669	853669	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT4	51378	broad.mit.edu	37	20	870983	870983	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPTL5	253935	broad.mit.edu	37	11	101775534	101775534	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41550662	41550662	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114253262	114253262	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	62023774	62023774	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRA2	57763	broad.mit.edu	37	5	72851384	72851384	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD17	26057	broad.mit.edu	37	4	74043232	74043232	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92675309	92675309	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD33	341405	broad.mit.edu	37	12	52283238	52283238	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD45	339416	broad.mit.edu	37	1	173616266	173616266	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD50	57182	broad.mit.edu	37	4	125599798	125599798	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26463463	26463463	+	Splice_Site	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO3	63982	broad.mit.edu	37	11	26663591	26663591	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO4	121601	broad.mit.edu	37	12	101480521	101480521	+	Silent	SNP	G	A	A	rs138063019	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45744489	45744489	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO6	196527	broad.mit.edu	37	12	45797234	45797234	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANP32C	23520	broad.mit.edu	37	4	165118554	165118554	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANPEP	290	broad.mit.edu	37	15	90328733	90328733	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71772696	71772696	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1G1	164	broad.mit.edu	37	16	71823475	71823475	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1M1	8907	broad.mit.edu	37	19	16320065	16320066	+	Intron	DNP	GG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3B1	8546	broad.mit.edu	37	5	77385316	77385316	+	Silent	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP3S1	1176	broad.mit.edu	37	5	115202294	115202294	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26785226	26785226	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APC	324	broad.mit.edu	37	5	112175225	112175225	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQP10	89872	broad.mit.edu	37	1	154295944	154295944	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115361834	115361834	+	3'UTR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP1	55738	broad.mit.edu	37	20	61917287	61917287	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP3	26286	broad.mit.edu	37	22	43236878	43236878	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP18	93663	broad.mit.edu	37	6	129950633	129950633	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP20	57569	broad.mit.edu	37	11	110454334	110454334	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP25	9938	broad.mit.edu	37	2	69002401	69002401	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119013842	119013842	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP31	57514	broad.mit.edu	37	3	119133386	119133386	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP5	394	broad.mit.edu	37	14	32562802	32562802	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF11	9826	broad.mit.edu	37	1	156927399	156927399	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF12	23365	broad.mit.edu	37	11	120300499	120300499	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF16	27237	broad.mit.edu	37	1	3396480	3396480	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF37	389337	broad.mit.edu	37	5	148988986	148988986	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF38	54848	broad.mit.edu	37	4	106473981	106473981	+	Missense_Mutation	SNP	C	T	T	rs147662568		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID2	196528	broad.mit.edu	37	12	46211516	46211516	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4A	5926	broad.mit.edu	37	14	58820404	58820404	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL6IP6	151188	broad.mit.edu	37	2	153575570	153575570	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARNT2	9915	broad.mit.edu	37	15	80767683	80767683	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSB	411	broad.mit.edu	37	5	78260464	78260464	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSG	22901	broad.mit.edu	37	17	66381118	66381118	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART3	419	broad.mit.edu	37	4	76943236	76943236	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ART4	420	broad.mit.edu	37	12	14993793	14993793	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARV1	64801	broad.mit.edu	37	1	231133088	231133088	+	3'UTR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB10	136371	broad.mit.edu	37	7	150873154	150873154	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177138215	177138215	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASL	435	broad.mit.edu	37	7	65554005	65554005	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMTL	8623	broad.mit.edu	37	X	1544637	1544637	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASNA1	439	broad.mit.edu	37	19	12858371	12858371	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASPM	259266	broad.mit.edu	37	1	197073145	197073145	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119187757	119187757	+	3'UTR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119737521	119737521	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31325273	31325273	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASZ1	136991	broad.mit.edu	37	7	117067532	117067532	+	5'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2	29028	broad.mit.edu	37	8	124381404	124381404	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD3B	83858	broad.mit.edu	37	1	1431272	1431272	+	3'UTR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF3	467	broad.mit.edu	37	1	212788263	212788263	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64662439	64662439	+	3'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2A	23130	broad.mit.edu	37	11	64664989	64664989	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160031019	160031019	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP10B	23120	broad.mit.edu	37	5	160097559	160097559	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11B	23200	broad.mit.edu	37	3	182575779	182575779	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2C1	27032	broad.mit.edu	37	3	130694302	130694302	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V1G3	127124	broad.mit.edu	37	1	198505804	198505804	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42617947	42617947	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A1	10396	broad.mit.edu	37	4	42628903	42628903	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8A2	51761	broad.mit.edu	37	13	26108269	26108269	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B5P	158381	broad.mit.edu	37	9	35450184	35450184	+	RNA	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP9B	374868	broad.mit.edu	37	18	76870662	76870662	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRN	8455	broad.mit.edu	37	20	3556573	3556573	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATR	545	broad.mit.edu	37	3	142238719	142238719	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70163398	70163398	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AVPR1B	553	broad.mit.edu	37	1	206225092	206225092	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZU1	566	broad.mit.edu	37	19	830715	830715	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT1	8708	broad.mit.edu	37	2	168725434	168725434	+	5'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALT4	8705	broad.mit.edu	37	6	33244282	33244282	+	5'Flank	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B4GALT1	2683	broad.mit.edu	37	9	33113962	33113962	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11038790	11038790	+	3'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11049568	11049568	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11058268	11058268	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	70040437	70040437	+	Silent	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAIAP3	8938	broad.mit.edu	37	16	1394604	1394604	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31592974	31592974	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT4	7918	broad.mit.edu	37	6	31631770	31631770	+	Silent	SNP	G	A	A	rs142946824	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BATF2	116071	broad.mit.edu	37	11	64764504	64764504	+	5'UTR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBOX1	8424	broad.mit.edu	37	11	27078769	27078769	+	Missense_Mutation	SNP	G	A	A	rs147348000	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS10	79738	broad.mit.edu	37	12	76739974	76739974	+	Silent	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBX	56987	broad.mit.edu	37	3	107491895	107491895	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156617004	156617004	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL9L	283149	broad.mit.edu	37	11	118772871	118772871	+	Nonsense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEND3	57673	broad.mit.edu	37	6	107391998	107391998	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BFSP2	8419	broad.mit.edu	37	3	133191318	133191318	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BICD1	636	broad.mit.edu	37	12	32458910	32458910	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC3	330	broad.mit.edu	37	11	102206810	102206810	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32800093	32800093	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC7	79444	broad.mit.edu	37	20	61869766	61869766	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BLM	641	broad.mit.edu	37	15	91341688	91341688	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP2	663	broad.mit.edu	37	15	59970019	59970019	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIP2	663	broad.mit.edu	37	15	59974604	59974604	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13616150	13616150	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPTF	2186	broad.mit.edu	37	17	65960317	65960317	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32914679	32914679	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD4	23476	broad.mit.edu	37	19	15350202	15350203	+	Splice_Site	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRD7	29117	broad.mit.edu	37	16	50359650	50359650	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRDT	676	broad.mit.edu	37	1	92459667	92459667	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1467122	1467122	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTF3L1	690	broad.mit.edu	37	13	77502598	77502598	+	RNA	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN3A1	11119	broad.mit.edu	37	6	26411376	26411376	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf76	79591	broad.mit.edu	37	10	103766493	103766493	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf1	64776	broad.mit.edu	37	11	111750474	111750474	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf43	64897	broad.mit.edu	37	12	121442169	121442169	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf59	120939	broad.mit.edu	37	12	10339082	10339082	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97087505	97087505	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf159	80017	broad.mit.edu	37	14	91670940	91670940	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf166	51637	broad.mit.edu	37	14	52471094	52471094	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60903733	60903733	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf48	256369	broad.mit.edu	37	14	94464535	94464536	+	Translation_Start_Site	DNP	GG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf41	84529	broad.mit.edu	37	15	36911147	36911147	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C16orf62	57020	broad.mit.edu	37	16	19612957	19612957	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf51	339263	broad.mit.edu	37	17	21477578	21477578	+	RNA	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf67	339210	broad.mit.edu	37	17	54893277	54893277	+	5'Flank	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30502071	30502071	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf44	84167	broad.mit.edu	37	19	16628152	16628152	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf47	126526	broad.mit.edu	37	19	40827997	40827997	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf123	54987	broad.mit.edu	37	1	53686221	53686221	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf124	83932	broad.mit.edu	37	1	231488267	231488267	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf125	126859	broad.mit.edu	37	1	179417427	179417427	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf127	148345	broad.mit.edu	37	1	11008812	11008812	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf129	80133	broad.mit.edu	37	1	170965850	170965850	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf168	199920	broad.mit.edu	37	1	57216826	57216826	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75038355	75038355	+	Silent	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75038802	75038802	+	Silent	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75042515	75042515	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf177	163747	broad.mit.edu	37	1	55277513	55277513	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf94	84970	broad.mit.edu	37	1	34684395	34684395	+	3'UTR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf107	388799	broad.mit.edu	37	20	55111569	55111569	+	3'UTR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf160	140706	broad.mit.edu	37	20	30602565	30602565	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf26	26074	broad.mit.edu	37	20	20140104	20140104	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf27	54976	broad.mit.edu	37	20	3736094	3736094	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf54	113278	broad.mit.edu	37	20	746287	746287	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf42	54980	broad.mit.edu	37	2	70408798	70408798	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf84	653140	broad.mit.edu	37	2	24400919	24400919	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3P1	388503	broad.mit.edu	37	19	10169335	10169335	+	Splice_Site	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf15	89876	broad.mit.edu	37	3	119466715	119466715	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf30	152405	broad.mit.edu	37	3	118865123	118865123	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf47	339942	broad.mit.edu	37	3	129042894	129042894	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf63	23272	broad.mit.edu	37	3	56675595	56675595	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf21	55345	broad.mit.edu	37	4	113554393	113554393	+	5'UTR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf27	54969	broad.mit.edu	37	4	170652852	170652852	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf27	54969	broad.mit.edu	37	4	170652908	170652908	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf27	54969	broad.mit.edu	37	4	170652995	170652995	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf27	54969	broad.mit.edu	37	4	170653039	170653039	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf27	54969	broad.mit.edu	37	4	170653079	170653079	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71201045	71201045	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf22	55322	broad.mit.edu	37	5	31538419	31538419	+	Missense_Mutation	SNP	G	T	T	rs142150259		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6	729	broad.mit.edu	37	5	41149636	41149636	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf10	10665	broad.mit.edu	37	6	32317651	32317651	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf114	85411	broad.mit.edu	37	6	13470560	13470560	+	5'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	47846756	47846756	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf138	442213	broad.mit.edu	37	6	48035776	48035776	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf174	387104	broad.mit.edu	37	6	127765277	127765277	+	3'UTR	SNP	G	C	C	rs151145731	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf192	116843	broad.mit.edu	37	6	133092339	133092339	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf217	100131814	broad.mit.edu	37	6	135941165	135941165	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf27	80737	broad.mit.edu	37	6	31742461	31742461	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf64	55776	broad.mit.edu	37	6	39082790	39082790	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7	730	broad.mit.edu	37	5	40937675	40937675	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf28B	221960	broad.mit.edu	37	7	6859747	6859748	+	Intron	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf31	136895	broad.mit.edu	37	7	25182019	25182019	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf31	136895	broad.mit.edu	37	7	25194768	25194768	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf41	222166	broad.mit.edu	37	7	30185980	30185980	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf47	221908	broad.mit.edu	37	7	100033311	100033311	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89897845	89897845	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf63	79846	broad.mit.edu	37	7	89934242	89934242	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8B	732	broad.mit.edu	37	1	57395200	57395200	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9	735	broad.mit.edu	37	5	39288979	39288979	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf128	392307	broad.mit.edu	37	9	35825139	35825139	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf156	51531	broad.mit.edu	37	9	100673008	100673008	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf44	158314	broad.mit.edu	37	9	94903903	94903903	+	RNA	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA5A	763	broad.mit.edu	37	16	87935551	87935551	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA5A	763	broad.mit.edu	37	16	87970183	87970183	+	5'Flank	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA7	766	broad.mit.edu	37	16	66880940	66880940	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABIN1	23523	broad.mit.edu	37	22	24434641	24434641	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CABYR	26256	broad.mit.edu	37	18	21736412	21736412	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	141007042	141007042	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2702620	2702621	+	Intron	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2704961	2704961	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1D	776	broad.mit.edu	37	3	53765007	53765007	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181745256	181745256	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1S	779	broad.mit.edu	37	1	201030327	201030327	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81593347	81593348	+	Intron	INS	-	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNB4	785	broad.mit.edu	37	2	152727402	152727402	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM1	23705	broad.mit.edu	37	11	115069138	115069138	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2A	815	broad.mit.edu	37	5	149631370	149631370	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44282850	44282850	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK2	10645	broad.mit.edu	37	12	121701579	121701579	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKV	79012	broad.mit.edu	37	3	49898775	49898775	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMSAP1	157922	broad.mit.edu	37	9	138713293	138713293	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMTA1	23261	broad.mit.edu	37	1	7151475	7151475	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAP2	10486	broad.mit.edu	37	6	17426755	17426755	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230883330	230883330	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN9	10753	broad.mit.edu	37	1	230931059	230931059	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75672868	75672868	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPS2	84698	broad.mit.edu	37	12	75699745	75699745	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD14	79092	broad.mit.edu	37	17	78175564	78175564	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP1	834	broad.mit.edu	37	11	104951058	104951058	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERB	79820	broad.mit.edu	37	14	92174456	92174456	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLL1	79872	broad.mit.edu	37	7	107398942	107398942	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBL	867	broad.mit.edu	37	11	119144584	119144584	+	Silent	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBR4	84869	broad.mit.edu	37	4	169923276	169923276	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBWD1	55871	broad.mit.edu	37	9	146290	146290	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC141	285025	broad.mit.edu	37	2	179732787	179732787	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC146	57639	broad.mit.edu	37	7	76916430	76916430	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC151	115948	broad.mit.edu	37	19	11545887	11545887	+	5'UTR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159847125	159847126	+	Intron	INS	-	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC30	728621	broad.mit.edu	37	1	42965846	42965846	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180378340	180378340	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180397253	180397253	+	Translation_Start_Site	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC84	338657	broad.mit.edu	37	11	118869066	118869066	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88C	440193	broad.mit.edu	37	14	91779509	91779509	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC99	54908	broad.mit.edu	37	5	169018232	169018232	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL14	6358	broad.mit.edu	37	17	34311533	34311533	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCND3	896	broad.mit.edu	37	6	41908796	41908796	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNT2	905	broad.mit.edu	37	2	135677405	135677405	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT3	7203	broad.mit.edu	37	1	156304793	156304793	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD163	9332	broad.mit.edu	37	12	7636212	7636212	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD22	933	broad.mit.edu	37	19	35831693	35831693	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD300LB	124599	broad.mit.edu	37	17	72522227	72522227	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD36	948	broad.mit.edu	37	7	80300567	80300567	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD37	951	broad.mit.edu	37	19	49840114	49840114	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD44	960	broad.mit.edu	37	11	35211479	35211479	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157801728	157801728	+	3'UTR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD5L	922	broad.mit.edu	37	1	157804200	157804200	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD86	942	broad.mit.edu	37	3	121838334	121838334	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD97	976	broad.mit.edu	37	19	14518875	14518875	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC16	8881	broad.mit.edu	37	13	115002123	115002123	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20	991	broad.mit.edu	37	1	43828590	43828590	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24511577	24511577	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH11	1009	broad.mit.edu	37	16	65032652	65032652	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH22	64405	broad.mit.edu	37	20	44828182	44828182	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25532316	25532316	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26885756	26885756	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK12	51755	broad.mit.edu	37	17	37657618	37657618	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK5RAP2	55755	broad.mit.edu	37	9	123201727	123201727	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDYL	9425	broad.mit.edu	37	6	4892563	4892563	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR5	27440	broad.mit.edu	37	22	17630341	17630341	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR1	9620	broad.mit.edu	37	22	46785372	46785372	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR3	1951	broad.mit.edu	37	3	48665887	48665887	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214814818	214814818	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214815414	214815414	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214818275	214818275	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214818772	214818772	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214818774	214818774	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214818975	214818975	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214819044	214819044	+	Nonsense_Mutation	SNP	C	G	G	rs7533166	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214819658	214819658	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214821965	214821965	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214825149	214825149	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214826243	214826243	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214830356	214830356	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214830542	214830542	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPF	1063	broad.mit.edu	37	1	214832169	214832169	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPH	64946	broad.mit.edu	37	5	68493000	68493000	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP120	153241	broad.mit.edu	37	5	122717941	122717941	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP135	9662	broad.mit.edu	37	4	56846224	56846224	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117232757	117232757	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117267987	117267987	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CES8	283848	broad.mit.edu	37	16	67040543	67040543	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR4	10877	broad.mit.edu	37	1	196879388	196879388	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFHR4	10877	broad.mit.edu	37	1	196883639	196883639	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196714946	196714946	+	Splice_Site	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGRRF1	10668	broad.mit.edu	37	14	54997175	54997175	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50824285	50824285	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50830116	50830116	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAT	1103	broad.mit.edu	37	10	50857656	50857656	+	Missense_Mutation	SNP	A	T	T	rs151031033		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD4	131474	broad.mit.edu	37	3	14158095	14158095	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD1L	9557	broad.mit.edu	37	1	146758077	146758078	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD2	1106	broad.mit.edu	37	15	93492225	93492225	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD6	84181	broad.mit.edu	37	20	40045257	40045257	+	Missense_Mutation	SNP	C	T	T	rs138675502	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHN1	1123	broad.mit.edu	37	2	175673554	175673554	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRM5	1133	broad.mit.edu	37	15	34356223	34356223	+	Silent	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA6	8973	broad.mit.edu	37	8	42620311	42620311	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST15	51363	broad.mit.edu	37	10	125801930	125801930	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHST1	8534	broad.mit.edu	37	11	45672310	45672310	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIB4	130106	broad.mit.edu	37	2	26806683	26806683	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CIITA	4261	broad.mit.edu	37	16	10996666	10996666	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46812001	46812001	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLASP2	23122	broad.mit.edu	37	3	33614712	33614712	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN17	26285	broad.mit.edu	37	21	31538455	31538455	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC10A	10462	broad.mit.edu	37	17	6979817	6979817	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC1A	51267	broad.mit.edu	37	12	10227980	10227981	+	Intron	DNP	CC	AG	AG			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC6A	93978	broad.mit.edu	37	12	8628815	8628815	+	Missense_Mutation	SNP	C	A	A	rs139024188		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLLU1OS	574016	broad.mit.edu	37	12	92814742	92814742	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLMN	79789	broad.mit.edu	37	14	95662857	95662857	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1	7401	broad.mit.edu	37	3	150644726	150644726	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19171032	19171032	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLUL1	27098	broad.mit.edu	37	18	624746	624747	+	Intron	DNP	CC	TA	TA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108685692	108685692	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMKLR1	1240	broad.mit.edu	37	12	108686330	108686330	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88296931	88296931	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGB3	54714	broad.mit.edu	37	8	87680295	87680295	+	Missense_Mutation	SNP	C	G	G	rs114305748	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT2	4848	broad.mit.edu	37	12	70738079	70738079	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41303937	41303937	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41418949	41418949	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1262346	1262346	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP4	85445	broad.mit.edu	37	16	76555172	76555172	+	Nonsense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125660661	125660661	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COBL	23242	broad.mit.edu	37	7	51258518	51258518	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103548353	103548353	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75890645	75890645	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101749448	101749448	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32167741	32167741	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL19A1	1310	broad.mit.edu	37	6	70866197	70866197	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94051176	94051176	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL1A2	1278	broad.mit.edu	37	7	94056935	94056935	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139629159	139629159	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL25A1	84570	broad.mit.edu	37	4	109774125	109774125	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48391491	48391491	+	Splice_Site	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189872840	189872840	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110813651	110813651	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110830136	110830136	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A1	1282	broad.mit.edu	37	13	110844719	110844719	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111009827	111009827	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111145440	111145440	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A2	1284	broad.mit.edu	37	13	111145470	111145470	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A3	1285	broad.mit.edu	37	2	228173983	228173983	+	Silent	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	227976473	227976473	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A4	1286	broad.mit.edu	37	2	228004926	228004926	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107834527	107834527	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107434774	107434774	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189898702	189898702	+	3'UTR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A2	1290	broad.mit.edu	37	2	189929300	189929300	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A1	1291	broad.mit.edu	37	21	47422668	47422668	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A3	1293	broad.mit.edu	37	2	238280656	238280656	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A1	1297	broad.mit.edu	37	6	70926640	70926640	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPB1	1315	broad.mit.edu	37	11	14502516	14502516	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORIN	10699	broad.mit.edu	37	4	47765396	47765396	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO2A	7464	broad.mit.edu	37	9	100893413	100893413	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6B1	1340	broad.mit.edu	37	19	36145633	36145633	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPA3	1359	broad.mit.edu	37	3	148604056	148604056	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197390239	197390239	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB2	286204	broad.mit.edu	37	9	126132933	126132933	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43910445	43910445	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRH	1392	broad.mit.edu	37	8	67089174	67089174	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRIPT	9419	broad.mit.edu	37	2	46846808	46846809	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRISP3	10321	broad.mit.edu	37	6	49704088	49704088	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROCC	9696	broad.mit.edu	37	1	17266430	17266430	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTC2	200186	broad.mit.edu	37	1	153925725	153925725	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYBG3	131544	broad.mit.edu	37	3	97596395	97596395	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRYGC	1420	broad.mit.edu	37	2	208993022	208993022	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSGALNACT2	55454	broad.mit.edu	37	10	43650780	43650780	+	Silent	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	4645293	4645294	+	Intron	DNP	GG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34049279	34049279	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34052631	34052631	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34071591	34071591	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34112374	34112374	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113420536	113420536	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113668392	113668392	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114186213	114186213	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9L	128821	broad.mit.edu	37	20	23545755	23545755	+	Intron	SNP	C	A	A	rs148541767	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST9	128822	broad.mit.edu	37	20	23584171	23584171	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTAGE5	4253	broad.mit.edu	37	14	39771326	39771326	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77489138	77489138	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTLA4	1493	broad.mit.edu	37	2	204735946	204735946	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA1	1495	broad.mit.edu	37	5	138253693	138253693	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57569422	57569422	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTSD	1509	broad.mit.edu	37	11	1774740	1774740	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUL3	8452	broad.mit.edu	37	2	225364921	225364921	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CWH43	80157	broad.mit.edu	37	4	48996751	48996751	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXCL12	6387	broad.mit.edu	37	10	44874113	44874113	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf23	256643	broad.mit.edu	37	X	19955739	19955739	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYB5R1	51706	broad.mit.edu	37	1	202936196	202936196	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP1	23191	broad.mit.edu	37	15	22955225	22955225	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYLC2	1539	broad.mit.edu	37	9	105767808	105767808	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143994886	143994886	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP17A1	1586	broad.mit.edu	37	10	104591453	104591453	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP3A5	1577	broad.mit.edu	37	7	99293354	99293354	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4A11	1579	broad.mit.edu	37	1	47403570	47403570	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F2	8529	broad.mit.edu	37	19	16008518	16008518	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4X1	260293	broad.mit.edu	37	1	47433568	47433568	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP7A1	1581	broad.mit.edu	37	8	59409478	59409478	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59787180	59787180	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAAM1	23002	broad.mit.edu	37	14	59822120	59822120	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59112838	59112838	+	Silent	SNP	G	A	A	rs145184753		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAGLB	221955	broad.mit.edu	37	7	6474236	6474236	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBC1	1620	broad.mit.edu	37	9	121929385	121929385	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DBT	1629	broad.mit.edu	37	1	100696436	100696436	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88885768	88885768	+	Silent	SNP	C	G	G	rs146041051	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF5	8816	broad.mit.edu	37	14	69529104	69529104	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTD	1635	broad.mit.edu	37	4	183836049	183836049	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCTN2	10540	broad.mit.edu	37	12	57939916	57939916	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52758109	52758109	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCX	1641	broad.mit.edu	37	X	110544770	110544770	+	3'UTR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDC	1644	broad.mit.edu	37	7	50563120	50563120	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD1	80821	broad.mit.edu	37	14	53525081	53525081	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDRGK1	65992	broad.mit.edu	37	20	3180739	3180740	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX18	8886	broad.mit.edu	37	2	118579625	118579626	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX42	11325	broad.mit.edu	37	17	61892812	61892812	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX4	54514	broad.mit.edu	37	5	55056085	55056085	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFA4	1669	broad.mit.edu	37	8	6794318	6794318	+	Missense_Mutation	SNP	C	A	A	rs149266478		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB115	245929	broad.mit.edu	37	20	29845424	29845424	+	5'Flank	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND1B	163486	broad.mit.edu	37	1	197704783	197704783	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND2A	27147	broad.mit.edu	37	7	140246714	140246714	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32215231	32215231	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEPDC5	9681	broad.mit.edu	37	22	32270283	32270283	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKB	1607	broad.mit.edu	37	7	14216479	14216479	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX58	79132	broad.mit.edu	37	17	40259975	40259975	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX8	1659	broad.mit.edu	37	17	41597707	41597707	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIDO1	11083	broad.mit.edu	37	20	61511984	61511984	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIMT1L	27292	broad.mit.edu	37	5	61686583	61686583	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DISP2	85455	broad.mit.edu	37	15	40659748	40659748	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	84027970	84027971	+	Intron	INS	-	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP4	22839	broad.mit.edu	37	20	35060907	35060907	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLK1	8788	broad.mit.edu	37	14	101200812	101200812	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLL1	28514	broad.mit.edu	37	6	170592416	170592416	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLST	1743	broad.mit.edu	37	14	75360126	75360126	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLX2	1746	broad.mit.edu	37	2	172965685	172965686	+	Intron	INS	-	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMBT1	1755	broad.mit.edu	37	10	124344617	124344617	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	31986444	31986444	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32632413	32632413	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32867855	32867855	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMGDH	29958	broad.mit.edu	37	5	78340017	78340017	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMRT3	58524	broad.mit.edu	37	9	990207	990207	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124360011	124360011	+	Silent	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH10	196385	broad.mit.edu	37	12	124398859	124398859	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH11	8701	broad.mit.edu	37	7	21779201	21779201	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52433526	52433526	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21071726	21071727	+	Intron	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13751251	13751251	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13823414	13823414	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196865308	196865308	+	Intron	DEL	T	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH7	56171	broad.mit.edu	37	2	196922906	196922906	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38863991	38863991	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38885209	38885209	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11604270	11604270	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAI2	64446	broad.mit.edu	37	17	72285814	72285814	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJA2	10294	broad.mit.edu	37	16	46992959	46992959	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB11	51726	broad.mit.edu	37	3	186302440	186302440	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJB2	3300	broad.mit.edu	37	2	220149663	220149663	+	Missense_Mutation	SNP	G	C	C	rs143306245	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC5	80331	broad.mit.edu	37	20	62562428	62562428	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC7	7266	broad.mit.edu	37	17	40142374	40142374	+	Silent	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC8	22826	broad.mit.edu	37	1	28537106	28537106	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNM1	1759	broad.mit.edu	37	9	131009749	131009749	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNMT3B	1789	broad.mit.edu	37	20	31379549	31379549	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNTT	1791	broad.mit.edu	37	10	98095772	98095772	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225738659	225738659	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK2	1794	broad.mit.edu	37	5	169508774	169508774	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25222219	25222219	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK6	57572	broad.mit.edu	37	19	11348080	11348080	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	390698	390698	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99534136	99534136	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99602012	99602012	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116525913	116525913	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L3	147991	broad.mit.edu	37	19	32899034	32899035	+	Intron	DNP	GG	CC	CC			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L4	286148	broad.mit.edu	37	8	95782853	95782853	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRP2	1821	broad.mit.edu	37	X	100509734	100509734	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSC1	1823	broad.mit.edu	37	18	28728733	28728733	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCC1	79075	broad.mit.edu	37	8	120856088	120856088	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCC1	79075	broad.mit.edu	37	8	120865274	120865274	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCR3	10311	broad.mit.edu	37	21	38597727	38597727	+	3'UTR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56368958	56368958	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32400876	32400876	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOX1	53905	broad.mit.edu	37	15	45454558	45454558	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUOXA2	405753	broad.mit.edu	37	15	45408279	45408279	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS2L	54920	broad.mit.edu	37	16	68110456	68110456	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC1LI2	1783	broad.mit.edu	37	16	66770215	66770215	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1	22873	broad.mit.edu	37	13	96293544	96293544	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBAG9	9166	broad.mit.edu	37	8	110576863	110576863	+	3'UTR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF3	253738	broad.mit.edu	37	10	131762117	131762117	+	5'Flank	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDA	1896	broad.mit.edu	37	X	68921178	68921178	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDEM3	80267	broad.mit.edu	37	1	184688331	184688331	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDNRB	1910	broad.mit.edu	37	13	78492680	78492680	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1P9	441032	broad.mit.edu	37	4	106405990	106405990	+	5'UTR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB4B	84766	broad.mit.edu	37	12	3765441	3765441	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82422766	82422766	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD1	79631	broad.mit.edu	37	15	82533764	82533764	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42971873	42971873	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38438275	38438275	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFR	1956	broad.mit.edu	37	7	55259368	55259368	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1AD	84285	broad.mit.edu	37	11	65767716	65767716	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF1AX	1964	broad.mit.edu	37	X	20152148	20152148	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B4	8890	broad.mit.edu	37	2	27591106	27591106	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3H	8667	broad.mit.edu	37	8	117658955	117658955	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF4H	7458	broad.mit.edu	37	7	73608900	73608900	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	36901501	36901501	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO2	63916	broad.mit.edu	37	20	45022462	45022462	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27303608	27303608	+	Missense_Mutation	SNP	G	A	A	rs140139205		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN1	11117	broad.mit.edu	37	2	27306454	27306454	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89093342	89093342	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EML5	161436	broad.mit.edu	37	14	89131954	89131954	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6908736	6908736	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR1	2015	broad.mit.edu	37	19	6908779	6908779	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR3	84658	broad.mit.edu	37	19	14730453	14730453	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENAM	10117	broad.mit.edu	37	4	71498515	71498515	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP1	5167	broad.mit.edu	37	6	132190717	132190717	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP4	22875	broad.mit.edu	37	6	46107260	46107260	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTHD1	150350	broad.mit.edu	37	22	40231877	40231877	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD5	957	broad.mit.edu	37	14	74439452	74439452	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENTPD5	957	broad.mit.edu	37	14	74453414	74453414	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L2	2037	broad.mit.edu	37	6	131216074	131216074	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA2	1969	broad.mit.edu	37	1	16462249	16462249	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66356361	66356361	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66361284	66361284	+	Intron	DEL	A	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPM2AIP1	9852	broad.mit.edu	37	3	37033806	37033806	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15L1	58513	broad.mit.edu	37	19	16551851	16551851	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51874055	51874055	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPS15	2060	broad.mit.edu	37	1	51875246	51875246	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERBB4	2066	broad.mit.edu	37	2	212288914	212288914	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERC1	23085	broad.mit.edu	37	12	1137189	1137189	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC4	2072	broad.mit.edu	37	16	14013975	14013975	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC5	2073	broad.mit.edu	37	13	103492110	103492110	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50690785	50690785	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC8	1161	broad.mit.edu	37	5	60240949	60240949	+	5'Flank	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERG	2078	broad.mit.edu	37	21	39947493	39947494	+	Intron	INS	-	GA	GA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT2	57488	broad.mit.edu	37	7	158540942	158540942	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESYT3	83850	broad.mit.edu	37	3	138191516	138191516	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV1	2115	broad.mit.edu	37	7	13935459	13935459	+	3'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV3L	440695	broad.mit.edu	37	1	157062682	157062682	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI2A	2123	broad.mit.edu	37	17	29645376	29645376	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOSC9	5393	broad.mit.edu	37	4	122722599	122722599	+	Nonsense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYA1	2138	broad.mit.edu	37	8	72211967	72211967	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F11	2160	broad.mit.edu	37	4	187206814	187206814	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F12	2161	broad.mit.edu	37	5	176831231	176831231	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197030920	197030920	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAAH2	158584	broad.mit.edu	37	X	57337171	57337171	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAHD2A	51011	broad.mit.edu	37	2	96071226	96071226	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAIM2	23017	broad.mit.edu	37	12	50290724	50290724	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM104A	84923	broad.mit.edu	37	17	71228443	71228443	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM114A1	92689	broad.mit.edu	37	4	38907405	38907405	+	Missense_Mutation	SNP	G	T	T	rs139238894	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM133A	286499	broad.mit.edu	37	X	92965007	92965007	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM134B	54463	broad.mit.edu	37	5	16508688	16508688	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164452	139164452	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139164698	139164698	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139380314	139380314	+	Intron	DEL	A	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM136A	84908	broad.mit.edu	37	2	70527848	70527848	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13A	10144	broad.mit.edu	37	4	89950552	89950552	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM149A	25854	broad.mit.edu	37	4	187077213	187077213	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM153C	653316	broad.mit.edu	37	5	177474230	177474230	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM154B	283726	broad.mit.edu	37	15	82575200	82575200	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM164A	51101	broad.mit.edu	37	8	79629425	79629425	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM168B	130074	broad.mit.edu	37	2	131829459	131829459	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM169A	26049	broad.mit.edu	37	5	74130458	74130458	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15325773	15325773	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM190A	401145	broad.mit.edu	37	4	91760334	91760334	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM198B	51313	broad.mit.edu	37	4	159076790	159076790	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM21C	253725	broad.mit.edu	37	10	46248088	46248088	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM27L	284123	broad.mit.edu	37	17	21825957	21825957	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM38B	63895	broad.mit.edu	37	18	10695994	10695994	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM45B	55855	broad.mit.edu	37	X	129629160	129629160	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148385	34148385	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM47A	158724	broad.mit.edu	37	X	34148601	34148601	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM49A	81553	broad.mit.edu	37	2	16793592	16793592	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177249996	177249996	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190067209	190067209	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65B	9750	broad.mit.edu	37	6	24849846	24849846	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65C	140876	broad.mit.edu	37	20	49227634	49227634	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71A	149647	broad.mit.edu	37	1	212798729	212798750	+	Frame_Shift_Del	DEL	AATTTACCTCTTGCGGCCACCC	-	-	rs138522825		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM71C	196472	broad.mit.edu	37	12	100042298	100042298	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM96A	84191	broad.mit.edu	37	15	64365103	64365103	+	3'UTR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAP	2191	broad.mit.edu	37	2	163072468	163072468	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FARSA	2193	broad.mit.edu	37	19	13035003	13035003	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASN	2194	broad.mit.edu	37	17	80039971	80039971	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTKD2	22868	broad.mit.edu	37	2	207652825	207652826	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531208	92531208	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531578	92531578	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92616156	92616156	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN1	2192	broad.mit.edu	37	22	45944567	45944567	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13669311	13669311	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127626463	127626463	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127627125	127627125	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8138167	8138167	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8148210	8148210	+	Silent	SNP	C	T	T	rs138737465		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBRS	64319	broad.mit.edu	37	16	30677742	30677742	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO18	84893	broad.mit.edu	37	10	5966502	5966502	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO34	55030	broad.mit.edu	37	14	55765524	55765524	+	Intron	SNP	C	T	T	rs118184339	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO48	554251	broad.mit.edu	37	2	68691766	68691766	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXW7	55294	broad.mit.edu	37	4	153303398	153303398	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCER1A	2205	broad.mit.edu	37	1	159277563	159277563	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR1C	100132417	broad.mit.edu	37	1	149370982	149370982	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHO1	23149	broad.mit.edu	37	19	17865786	17865786	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCHSD2	9873	broad.mit.edu	37	11	72651574	72651574	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157718261	157718261	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157665807	157665807	+	Intron	SNP	G	T	T	rs111735268		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157566094	157566095	+	Intron	DNP	GG	CT	CT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL5	83416	broad.mit.edu	37	1	157497838	157497838	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108386930	108386930	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER	2241	broad.mit.edu	37	5	108388111	108388111	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FEZF1	389549	broad.mit.edu	37	7	121942184	121942184	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF14	2259	broad.mit.edu	37	13	102375099	102375099	+	3'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGFBP1	9982	broad.mit.edu	37	4	15937647	15937648	+	Missense_Mutation	DNP	CA	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGR	2268	broad.mit.edu	37	1	27943704	27943704	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34192218	34192218	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP6	8468	broad.mit.edu	37	7	72743206	72743206	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKBP7	51661	broad.mit.edu	37	2	179343127	179343127	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLCN	201163	broad.mit.edu	37	17	17127348	17127348	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152326311	152326311	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152329486	152329486	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109190269	109190269	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607206	84607206	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128478258	128478258	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28891497	28891497	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT3LG	2323	broad.mit.edu	37	19	49979648	49979648	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180046569	180046569	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180048182	180048182	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171244728	171244728	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMOD	2331	broad.mit.edu	37	1	203224961	203224961	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49175352	49175352	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49204846	49204846	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOLH1	2346	broad.mit.edu	37	11	49227674	49227674	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXB2	442425	broad.mit.edu	37	9	79635143	79635143	+	Silent	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXK1	221937	broad.mit.edu	37	7	4780536	4780536	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FPGT	8790	broad.mit.edu	37	1	74671550	74671550	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79373436	79373436	+	Missense_Mutation	SNP	G	T	T	rs76623027	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79403083	79403083	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FREM1	158326	broad.mit.edu	37	9	14859625	14859625	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRRS1	391059	broad.mit.edu	37	1	100206567	100206567	+	Intron	DEL	A	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTCD	10841	broad.mit.edu	37	21	47571438	47571438	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUT9	10690	broad.mit.edu	37	6	96651667	96651667	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FZD2	2535	broad.mit.edu	37	17	42635929	42635929	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB2	9846	broad.mit.edu	37	11	78095645	78095645	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABBR1	2550	broad.mit.edu	37	6	29588791	29588791	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46973002	46973002	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27193365	27193365	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161520721	161520721	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRR1	2569	broad.mit.edu	37	6	89913039	89913039	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD1	2571	broad.mit.edu	37	2	171716263	171716263	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT6	11226	broad.mit.edu	37	12	51759195	51759195	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT8	26290	broad.mit.edu	37	12	4848510	4848510	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT9	50614	broad.mit.edu	37	12	132683931	132683931	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL1	57452	broad.mit.edu	37	14	69791918	69791918	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2	2620	broad.mit.edu	37	11	22707342	22707342	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC2	9648	broad.mit.edu	37	2	109087635	109087635	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44190624	44190624	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120585948	120585948	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120596319	120596319	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GC	2638	broad.mit.edu	37	4	72623761	72623761	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GEMIN5	25929	broad.mit.edu	37	5	154304276	154304276	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFER	2671	broad.mit.edu	37	16	2035896	2035896	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFM1	85476	broad.mit.edu	37	3	158399993	158399993	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGNBP2	79893	broad.mit.edu	37	17	34935601	34935601	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH1	2688	broad.mit.edu	37	17	61995647	61995647	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GH2	2689	broad.mit.edu	37	17	61958249	61958249	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHRHR	2692	broad.mit.edu	37	7	31015490	31015490	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GHR	2690	broad.mit.edu	37	5	42468460	42468460	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIN1	54826	broad.mit.edu	37	5	102432295	102432295	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GINS2	51659	broad.mit.edu	37	16	85721135	85721135	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIPC2	54810	broad.mit.edu	37	1	78557815	78557815	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLCCI1	113263	broad.mit.edu	37	7	8099700	8099700	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6554786	6554786	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDN	342035	broad.mit.edu	37	15	51693743	51693743	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI1	2735	broad.mit.edu	37	12	57859454	57859454	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42079862	42079862	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI3	2737	broad.mit.edu	37	7	42153073	42153073	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLI4	2738	broad.mit.edu	37	8	144358399	144358399	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP1R	2740	broad.mit.edu	37	6	39045953	39045953	+	Intron	DEL	A	-	-	rs74644392		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRX3	10539	broad.mit.edu	37	10	131964638	131964638	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLS2	27165	broad.mit.edu	37	12	56869564	56869564	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLT6D1	360203	broad.mit.edu	37	9	138515896	138515897	+	3'UTR	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLUL	2752	broad.mit.edu	37	1	182355522	182355522	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL2	219970	broad.mit.edu	37	11	58605003	58605003	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMPPA	29926	broad.mit.edu	37	2	220368852	220368852	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAI1	2770	broad.mit.edu	37	7	79818431	79818431	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131019808	131019808	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GON4L	54856	broad.mit.edu	37	1	155755039	155755039	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR2	9570	broad.mit.edu	37	17	45101926	45101926	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GP2	2813	broad.mit.edu	37	16	20329700	20329700	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH8	23131	broad.mit.edu	37	17	42542096	42542096	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPBP1	65056	broad.mit.edu	37	5	56526587	56526587	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPD1	2819	broad.mit.edu	37	12	50498346	50498346	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67227367	67227367	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPHN	10243	broad.mit.edu	37	14	67577048	67577048	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135433701	135433701	+	Splice_Site	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR113	165082	broad.mit.edu	37	2	26534999	26534999	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46849943	46849943	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR123	84435	broad.mit.edu	37	10	134884455	134884455	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR124	25960	broad.mit.edu	37	8	37686952	37686952	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100349708	100349708	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR143	4935	broad.mit.edu	37	X	9714219	9714219	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR85	54329	broad.mit.edu	37	7	112724477	112724477	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR97	222487	broad.mit.edu	37	16	57713163	57713163	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR98	84059	broad.mit.edu	37	5	90119264	90119264	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD1C	54762	broad.mit.edu	37	3	113638840	113638840	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94137997	94137997	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94547753	94547753	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120823544	120823544	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK4	2900	broad.mit.edu	37	11	120831809	120831809	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88780315	88780315	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126173425	126173425	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSN	2934	broad.mit.edu	37	9	124072923	124072923	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSS	2937	broad.mit.edu	37	20	33533834	33533834	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52696930	52696930	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2	2946	broad.mit.edu	37	1	110212186	110212186	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTF3C1	2975	broad.mit.edu	37	16	27489951	27489951	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14798242	14798242	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14813879	14813880	+	Intron	DNP	GG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GULP1	51454	broad.mit.edu	37	2	189452738	189452738	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HACL1	26061	broad.mit.edu	37	3	15621336	15621336	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HADHB	3032	broad.mit.edu	37	2	26507546	26507546	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN1	1404	broad.mit.edu	37	5	82940463	82940463	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAPLN1	1404	broad.mit.edu	37	5	82940554	82940554	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HARS2	23438	broad.mit.edu	37	5	140076603	140076603	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR1	26762	broad.mit.edu	37	5	156476144	156476144	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCK	3055	broad.mit.edu	37	20	30687111	30687111	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45645362	45645362	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC5	10014	broad.mit.edu	37	17	42156375	42156375	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC8	55869	broad.mit.edu	37	X	71791953	71791953	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236719179	236719179	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR1	55127	broad.mit.edu	37	1	236723047	236723047	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	40998313	40998313	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124731388	124731388	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEPACAM2	253012	broad.mit.edu	37	7	92844989	92844989	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	63978479	63978479	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC1	8925	broad.mit.edu	37	15	64004880	64004880	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC2	8924	broad.mit.edu	37	15	28362306	28362306	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69699482	69699482	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC4	26091	broad.mit.edu	37	10	69793920	69793920	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC5	51191	broad.mit.edu	37	4	89393078	89393078	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC6	55008	broad.mit.edu	37	4	89311943	89311943	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC6	55008	broad.mit.edu	37	4	89338598	89338598	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEY2	23493	broad.mit.edu	37	6	126080174	126080174	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGSNAT	138050	broad.mit.edu	37	8	43047444	43047444	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIBADH	11112	broad.mit.edu	37	7	27565754	27565754	+	3'UTR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIP1R	9026	broad.mit.edu	37	12	123341206	123341206	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIRA	7290	broad.mit.edu	37	22	19371330	19371330	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4H	8365	broad.mit.edu	37	6	26285712	26285712	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST2H2BE	8349	broad.mit.edu	37	1	149857921	149857921	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCS1	3157	broad.mit.edu	37	5	43292879	43292879	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMX2	3167	broad.mit.edu	37	10	124909497	124909497	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPR	10236	broad.mit.edu	37	1	23650093	23650093	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42829390	42829390	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HORMAD1	84072	broad.mit.edu	37	1	150681264	150681264	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB3	3213	broad.mit.edu	37	17	46654468	46654468	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB7	3217	broad.mit.edu	37	17	46685385	46685385	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXC10	3226	broad.mit.edu	37	12	54379159	54379159	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXD9	3235	broad.mit.edu	37	2	176987735	176987735	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPCAL1	3241	broad.mit.edu	37	2	10560020	10560020	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS3	84343	broad.mit.edu	37	3	148858404	148858404	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18303900	18303900	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPS5	11234	broad.mit.edu	37	11	18309600	18309600	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRG	3273	broad.mit.edu	37	3	186387599	186387599	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRNR	388697	broad.mit.edu	37	1	152187577	152187577	+	Silent	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS1BP3	64342	broad.mit.edu	37	2	20838458	20838458	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HS3ST4	9951	broad.mit.edu	37	16	26043928	26043928	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPB7	27129	broad.mit.edu	37	1	16342122	16342122	+	Missense_Mutation	SNP	G	C	C	rs114208608	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22192207	22192207	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1E	3354	broad.mit.edu	37	6	87725435	87725435	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR6	3362	broad.mit.edu	37	1	19992205	19992205	+	5'UTR	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95003138	95003138	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IARS	3376	broad.mit.edu	37	9	95042936	95042936	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICK	22858	broad.mit.edu	37	6	52871150	52871150	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA4	3441	broad.mit.edu	37	9	21187458	21187458	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA7	3444	broad.mit.edu	37	9	21201973	21201973	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGDCC4	57722	broad.mit.edu	37	15	65677328	65677328	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1	3479	broad.mit.edu	37	12	102813510	102813510	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF2R	3482	broad.mit.edu	37	6	160454208	160454208	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130419770	130419770	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF1	3547	broad.mit.edu	37	X	130420280	130420281	+	Intron	INS	-	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18692014	18692014	+	Missense_Mutation	SNP	A	T	T	rs140063076		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF6	10261	broad.mit.edu	37	16	21654460	21654460	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111640762	111640762	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL13RA2	3598	broad.mit.edu	37	X	114242701	114242701	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17F	112744	broad.mit.edu	37	6	52111412	52111412	+	5'Flank	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL18RAP	8807	broad.mit.edu	37	2	103057795	103057795	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1F7	27178	broad.mit.edu	37	2	113675249	113675249	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104440587	104440587	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL27	246778	broad.mit.edu	37	16	28515337	28515337	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL5RA	3568	broad.mit.edu	37	3	3132002	3132002	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7	3574	broad.mit.edu	37	8	79673961	79673961	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL9R	3581	broad.mit.edu	37	X	155232673	155232673	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INADL	10207	broad.mit.edu	37	1	62550300	62550300	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41740080	41740080	+	5'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143129922	143129922	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5J	27124	broad.mit.edu	37	22	31522647	31522647	+	Silent	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15134045	15134045	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSC	387755	broad.mit.edu	37	11	15197587	15197587	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSRR	3645	broad.mit.edu	37	1	156813378	156813378	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO13	9670	broad.mit.edu	37	1	44432092	44432092	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQCG	84223	broad.mit.edu	37	3	197616237	197616237	+	3'UTR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	91010643	91010643	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156503678	156503678	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP3	128239	broad.mit.edu	37	1	156521478	156521478	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS4	8471	broad.mit.edu	37	X	107976561	107976561	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR2	57611	broad.mit.edu	37	15	74425680	74425680	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISLR	3671	broad.mit.edu	37	15	74467991	74467991	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52218465	52218465	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA2B	3674	broad.mit.edu	37	17	42462774	42462774	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA8	8516	broad.mit.edu	37	10	15600298	15600299	+	Intron	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA9	3680	broad.mit.edu	37	3	37778285	37778285	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAD	3681	broad.mit.edu	37	16	31421741	31421741	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB6	3694	broad.mit.edu	37	2	160968830	160968830	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH4	3700	broad.mit.edu	37	3	52852311	52852311	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156679624	156679624	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR1	3708	broad.mit.edu	37	3	4699805	4699805	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26714783	26714784	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26784866	26784866	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPRIP	85450	broad.mit.edu	37	10	106075557	106075557	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JMJD1C	221037	broad.mit.edu	37	10	64968029	64968029	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JOSD2	126119	broad.mit.edu	37	19	51013625	51013625	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD5	131377	broad.mit.edu	37	3	42727898	42727898	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA4	3739	broad.mit.edu	37	11	30034042	30034042	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156009858	156009858	+	Intron	SNP	G	T	T	rs138625130		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB3	9196	broad.mit.edu	37	17	7830684	7830686	+	Missense_Mutation	TNP	CGG	AAA	AAA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNB2	9312	broad.mit.edu	37	8	73849879	73849879	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH1	3756	broad.mit.edu	37	1	211034812	211034812	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19491866	19491866	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ12	3768	broad.mit.edu	37	17	21319012	21319012	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ5	3762	broad.mit.edu	37	11	128786320	128786320	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMB3	27094	broad.mit.edu	37	3	178978332	178978332	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73900515	73900515	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36644949	36644949	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36766804	36766804	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNV2	169522	broad.mit.edu	37	9	2717919	2717919	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD2	23510	broad.mit.edu	37	17	73056446	73056446	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM3A	55818	broad.mit.edu	37	2	86713075	86713075	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	404668	404668	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0141	9812	broad.mit.edu	37	5	141303535	141303535	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0146	23514	broad.mit.edu	37	8	48647874	48647874	+	Nonsense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0226	9711	broad.mit.edu	37	3	197409236	197409236	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123175388	123175388	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1217	56243	broad.mit.edu	37	10	24508891	24508891	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1328	57536	broad.mit.edu	37	18	34753035	34753035	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	93943857	93943857	+	5'Flank	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1429	25962	broad.mit.edu	37	8	95539314	95539314	+	Silent	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59919955	59919955	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1522	57648	broad.mit.edu	37	1	33235819	33235819	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1530	57654	broad.mit.edu	37	4	1377501	1377501	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36888932	36888932	+	5'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1797	54914	broad.mit.edu	37	9	20822903	20822904	+	Intron	DNP	GG	TA	TA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1841	84542	broad.mit.edu	37	2	61315512	61315512	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1958	158405	broad.mit.edu	37	9	115337153	115337153	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2022	340533	broad.mit.edu	37	X	73959987	73959987	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF13A	63971	broad.mit.edu	37	6	17987600	17987600	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44846844	44846844	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF1A	547	broad.mit.edu	37	2	241725738	241725738	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF20A	10112	broad.mit.edu	37	5	137519015	137519015	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF25	3834	broad.mit.edu	37	6	168431482	168431482	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26A	26153	broad.mit.edu	37	14	104643066	104643066	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF26B	55083	broad.mit.edu	37	1	245766260	245766260	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51900958	51900958	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4B	285643	broad.mit.edu	37	5	154395249	154395250	+	Missense_Mutation	DNP	TG	CT	CT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55354216	55354216	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55593834	55593834	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC9	126823	broad.mit.edu	37	1	161069200	161069200	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL13	90293	broad.mit.edu	37	X	117043468	117043468	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70413063	70413063	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70514361	70514361	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL22	84861	broad.mit.edu	37	22	20796476	20796476	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNTC1	9735	broad.mit.edu	37	12	123055684	123055684	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRI1	65095	broad.mit.edu	37	19	10668695	10668695	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT15	3866	broad.mit.edu	37	17	39674529	39674529	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT24	192666	broad.mit.edu	37	17	38855631	38855631	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT35	3886	broad.mit.edu	37	17	39636931	39636931	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT6C	286887	broad.mit.edu	37	12	52863095	52863095	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT74	121391	broad.mit.edu	37	12	52965008	52965008	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52789735	52789735	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT8	3856	broad.mit.edu	37	12	53295812	53295812	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP13-3	337960	broad.mit.edu	37	21	31797875	31797875	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP24-1	643803	broad.mit.edu	37	21	31654687	31654687	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-3	337968	broad.mit.edu	37	21	31964886	31964886	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KTELC1	56983	broad.mit.edu	37	3	119207874	119207874	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL2	83746	broad.mit.edu	37	22	41609955	41609955	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LALBA	3906	broad.mit.edu	37	12	48963868	48963868	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7009334	7009334	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7036007	7036008	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA1	284217	broad.mit.edu	37	18	7038649	7038649	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129637432	129637432	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129663545	129663545	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183099634	183099634	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP4B	23185	broad.mit.edu	37	10	858953	858961	+	In_Frame_Del	DEL	CCTCTGGTC	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LBP	3929	broad.mit.edu	37	20	36997738	36997738	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE4A	199834	broad.mit.edu	37	1	152681469	152681469	+	5'Flank	DEL	A	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136594643	136594643	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LECT1	11061	broad.mit.edu	37	13	53286636	53286636	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY2	7044	broad.mit.edu	37	1	226128626	226128626	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEO1	123169	broad.mit.edu	37	15	52250861	52250861	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66101817	66101817	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGALS12	85329	broad.mit.edu	37	11	63276526	63276526	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGSN	51557	broad.mit.edu	37	6	63990184	63990184	+	Silent	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGTN	1939	broad.mit.edu	37	1	206776687	206776687	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX5	64211	broad.mit.edu	37	12	113906917	113906917	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75626524	75626524	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIG4	3981	broad.mit.edu	37	13	108862284	108862284	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN2	10960	broad.mit.edu	37	5	176765534	176765534	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBR1L	55716	broad.mit.edu	37	12	49495285	49495285	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNA	4000	broad.mit.edu	37	1	156100423	156100423	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMO2	4005	broad.mit.edu	37	11	33886415	33886415	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMOD2	442721	broad.mit.edu	37	7	123302795	123302795	+	Silent	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100129055	100129055	broad.mit.edu	37	10	38484458	38484458	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC157627	157627	broad.mit.edu	37	8	9760847	9760847	+	5'Flank	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441294	441294	broad.mit.edu	37	7	143268923	143268923	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC541471	541471	broad.mit.edu	37	2	112142225	112142225	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC643486	643486	broad.mit.edu	37	X	95592368	95592368	+	RNA	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645752	645752	broad.mit.edu	37	15	78217316	78217316	+	5'UTR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21937321	21937321	+	RNA	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66131215	66131215	+	RNA	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC654342	654342	broad.mit.edu	37	2	91809137	91809137	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC727924	727924	broad.mit.edu	37	15	22298212	22298212	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728855	728855	broad.mit.edu	37	1	149648345	149648345	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC81691	81691	broad.mit.edu	37	16	20826583	20826583	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23257841	23257841	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161027594	161027594	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPA	4018	broad.mit.edu	37	6	161032537	161032537	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	81968585	81968585	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN2	23266	broad.mit.edu	37	1	82456749	82456749	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62758560	62758560	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62845363	62845390	+	Frame_Shift_Del	DEL	GCATCTTCACATTTTGCTTTTTCCGGGG	-	-	rs151274984	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPL	4023	broad.mit.edu	37	8	19805998	19805998	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188327238	188327238	+	Nonsense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH3	84859	broad.mit.edu	37	3	197518272	197518272	+	Silent	SNP	C	G	G	rs146761360	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIT3	345193	broad.mit.edu	37	4	110791278	110791278	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141459344	141459344	+	Missense_Mutation	SNP	C	A	A	rs147767913		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141771098	141771098	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141777485	141777485	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1	4035	broad.mit.edu	37	12	57578074	57578074	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	169996876	169996876	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170002408	170002408	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170068758	170068758	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP4	4038	broad.mit.edu	37	11	46896534	46896534	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC69	100130742	broad.mit.edu	37	8	92169768	92169768	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70300612	70300612	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC8E	80131	broad.mit.edu	37	19	7963616	7963616	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRIQ1	84125	broad.mit.edu	37	12	85450738	85450738	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRN4CL	221091	broad.mit.edu	37	11	62457740	62457740	+	5'Flank	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	115805239	115805239	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSMD1	84316	broad.mit.edu	37	17	7760052	7760052	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33487943	33487943	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74969961	74969961	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP2	4053	broad.mit.edu	37	14	74977752	74977752	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTV1	84946	broad.mit.edu	37	6	144178332	144178332	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25004973	25004973	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160783548	160783548	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY9	4063	broad.mit.edu	37	1	160783712	160783712	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYNX1	66004	broad.mit.edu	37	8	143846019	143846019	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYRM1	57149	broad.mit.edu	37	16	20926814	20926814	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACC1	346389	broad.mit.edu	37	7	20193694	20193694	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD1L1	8379	broad.mit.edu	37	7	2255701	2255701	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAD2L2	10459	broad.mit.edu	37	1	11734865	11734865	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47330834	47330834	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAEL	84944	broad.mit.edu	37	1	166962240	166962240	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1D	254042	broad.mit.edu	37	2	172935578	172935578	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K2	5605	broad.mit.edu	37	19	4099265	4099265	+	Missense_Mutation	SNP	C	T	T	rs150369301		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	67920253	67920253	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K6	5608	broad.mit.edu	37	17	67513012	67513012	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K9	4293	broad.mit.edu	37	14	71202793	71202793	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP6	4135	broad.mit.edu	37	11	75316665	75316665	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP7	9053	broad.mit.edu	37	6	136710462	136710462	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPKAP1	79109	broad.mit.edu	37	9	128347858	128347858	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16067851	16067851	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	165110554	165110554	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCO	8685	broad.mit.edu	37	2	119727620	119727620	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MASP1	5648	broad.mit.edu	37	3	186943004	186943004	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAVS	57506	broad.mit.edu	37	20	3835103	3835103	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS1	8720	broad.mit.edu	37	16	84099360	84099360	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC1	56922	broad.mit.edu	37	3	182733374	182733374	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCC	4163	broad.mit.edu	37	5	112403916	112403916	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCF2L	23263	broad.mit.edu	37	13	113656327	113656327	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM5	4174	broad.mit.edu	37	22	35802719	35802719	+	Splice_Site	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCOLN1	57192	broad.mit.edu	37	19	7589950	7589950	+	Silent	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDFIC	29969	broad.mit.edu	37	7	114619883	114619883	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47426604	47426604	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDM2	4193	broad.mit.edu	37	12	69218142	69218142	+	Splice_Site	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDN1	23195	broad.mit.edu	37	6	90459956	90459956	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70345690	70345707	+	Intron	DEL	TCCCCTTCCCTTCATTCC	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70345900	70345900	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED12	9968	broad.mit.edu	37	X	70346351	70346351	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13	9969	broad.mit.edu	37	17	60130024	60130024	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126783278	126783278	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MELK	9833	broad.mit.edu	37	9	36632977	36632977	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEP1A	4224	broad.mit.edu	37	6	46806815	46806815	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL13	51603	broad.mit.edu	37	1	171765473	171765473	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
METTL3	56339	broad.mit.edu	37	14	21969067	21969067	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFRP	83552	broad.mit.edu	37	11	119216361	119216361	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD10	10227	broad.mit.edu	37	4	2935498	2935498	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141767072	141767072	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74934145	74934145	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97515430	97515430	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALCL	84953	broad.mit.edu	37	11	12376383	12376383	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPEP	4285	broad.mit.edu	37	13	24455780	24455780	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR1269	100302177	broad.mit.edu	37	4	67142539	67142539	+	5'Flank	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR513B	100302253	broad.mit.edu	37	X	146280622	146280622	+	RNA	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516A1	574498	broad.mit.edu	37	19	54259955	54259955	+	5'Flank	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR516A2	574499	broad.mit.edu	37	19	54264340	54264340	+	5'Flank	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR622	693207	broad.mit.edu	37	13	90882989	90882989	+	5'Flank	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKLN1	4289	broad.mit.edu	37	7	131155493	131155493	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151962241	151962241	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151970897	151970897	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLLT4	4301	broad.mit.edu	37	6	168311949	168311949	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLXIP	22877	broad.mit.edu	37	12	122617945	122617945	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMD2	221938	broad.mit.edu	37	7	4950852	4950852	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP16	4325	broad.mit.edu	37	8	89086811	89086811	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP1	4312	broad.mit.edu	37	11	102667841	102667841	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP25	64386	broad.mit.edu	37	16	3108841	3108841	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP2	4313	broad.mit.edu	37	16	55519412	55519412	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90874329	90874329	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158817442	158817442	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MNDA	4332	broad.mit.edu	37	1	158817714	158817714	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOBKL2B	79817	broad.mit.edu	37	9	27358939	27358939	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOGAT2	80168	broad.mit.edu	37	11	75428947	75428947	+	Missense_Mutation	SNP	C	T	T	rs146774065		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108778738	108778738	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC2	22880	broad.mit.edu	37	22	31329999	31329999	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORF4	10934	broad.mit.edu	37	4	174537112	174537112	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50563913	50563913	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPHOSPH6	10200	broad.mit.edu	37	16	82182933	82182933	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPO	4353	broad.mit.edu	37	17	56355582	56355582	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPP4	58538	broad.mit.edu	37	2	202557602	202557602	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL1	65008	broad.mit.edu	37	4	78871187	78871188	+	Intron	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS22	56945	broad.mit.edu	37	3	139065945	139065945	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPS31	10240	broad.mit.edu	37	13	41344933	41344933	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRVI1	10335	broad.mit.edu	37	11	10603596	10603596	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A15	219995	broad.mit.edu	37	11	60543111	60543111	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSR1	4481	broad.mit.edu	37	8	15998538	15998538	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSRA	4482	broad.mit.edu	37	8	10177494	10177494	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1P9	11223	broad.mit.edu	37	1	17087293	17087293	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MST1R	4486	broad.mit.edu	37	3	49928550	49928550	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTF1	4520	broad.mit.edu	37	1	38322977	38322977	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR14	64419	broad.mit.edu	37	3	9739372	9739372	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR2	8898	broad.mit.edu	37	11	95598934	95598934	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR7	9108	broad.mit.edu	37	8	17228696	17228696	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7897074	7897075	+	Intron	DNP	TG	AC	AC			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTR	4548	broad.mit.edu	37	1	236998773	236998773	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTSS1	9788	broad.mit.edu	37	8	125603417	125603417	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29608211	29608211	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29855914	29855914	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9005266	9005266	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9047974	9047974	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9067439	9067439	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUDENG	55745	broad.mit.edu	37	14	57736068	57736068	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUT	4594	broad.mit.edu	37	6	49425827	49425827	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL1	4603	broad.mit.edu	37	8	67488548	67488548	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYB	4602	broad.mit.edu	37	6	135522779	135522779	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYCBP2	23077	broad.mit.edu	37	13	77663032	77663032	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10243657	10243657	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10356737	10356737	+	Intron	SNP	G	T	T	rs148255014	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23872969	23872970	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH7	4625	broad.mit.edu	37	14	23882191	23882191	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10300327	10300327	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK3	91807	broad.mit.edu	37	16	46781676	46781676	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109445881	109445881	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109535456	109535456	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3A	53904	broad.mit.edu	37	10	26355846	26355846	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO6	4646	broad.mit.edu	37	6	76602436	76602436	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128381781	128381781	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2027413	2027413	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	1926072	1926073	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1	4661	broad.mit.edu	37	20	62859386	62859386	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA50	80218	broad.mit.edu	37	3	113442796	113442796	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175293949	175293949	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALADL2	254827	broad.mit.edu	37	3	175436483	175436483	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101712240	101712240	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	101833456	101833456	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NALCN	259232	broad.mit.edu	37	13	102029223	102029223	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAPA	8775	broad.mit.edu	37	19	47996348	47996348	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15555687	15555687	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF14	25832	broad.mit.edu	37	1	148012569	148012569	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCALD	83988	broad.mit.edu	37	8	102884659	102884659	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPD2	9918	broad.mit.edu	37	12	6631989	6631989	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCF2	4688	broad.mit.edu	37	1	183536234	183536234	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP1L	3071	broad.mit.edu	37	12	54912820	54912820	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCOA3	8202	broad.mit.edu	37	20	46276056	46276056	+	Silent	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCRNA00158	54072	broad.mit.edu	37	21	26763195	26763195	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDRG2	57447	broad.mit.edu	37	14	21488034	21488034	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST2	8509	broad.mit.edu	37	10	75563830	75563830	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST4	64579	broad.mit.edu	37	4	115773903	115773903	+	Silent	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB4	4710	broad.mit.edu	37	3	120320114	120320114	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFC1	4717	broad.mit.edu	37	4	140216334	140216334	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS2	4720	broad.mit.edu	37	1	161180085	161180085	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21074756	21074756	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEBL	10529	broad.mit.edu	37	10	21435525	21435525	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152423688	152423688	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEB	4703	broad.mit.edu	37	2	152499881	152499881	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	55992185	55992185	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEFH	4744	broad.mit.edu	37	22	29879485	29879485	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK11	79858	broad.mit.edu	37	3	130852750	130852750	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20869065	20869065	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70417719	70417719	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70526213	70526213	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1P1	440225	broad.mit.edu	37	15	22145768	22145768	+	RNA	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF2	4771	broad.mit.edu	37	22	30057162	30057162	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFAT5	10725	broad.mit.edu	37	16	69726378	69726378	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIZ	64332	broad.mit.edu	37	3	101571196	101571196	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFKBIZ	64332	broad.mit.edu	37	3	101578130	101578130	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFX1	4799	broad.mit.edu	37	9	33367698	33367698	+	Intron	DEL	A	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NHP2	55651	broad.mit.edu	37	5	177576618	177576618	+	3'UTR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIPBL	25836	broad.mit.edu	37	5	37027440	37027440	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN2	154215	broad.mit.edu	37	6	125144577	125144577	+	3'UTR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63768343	63768343	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKX2-5	1482	broad.mit.edu	37	5	172661677	172661677	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173997326	173997326	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN4X	57502	broad.mit.edu	37	X	5827225	5827225	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP13	126204	broad.mit.edu	37	19	56419039	56419039	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7091678	7091678	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247582246	247582246	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP3	114548	broad.mit.edu	37	1	247597474	247597474	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56531812	56531812	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMNAT2	23057	broad.mit.edu	37	1	183259340	183259340	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL4	8715	broad.mit.edu	37	18	31432983	31432983	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1	4842	broad.mit.edu	37	12	117657886	117657886	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155718540	155718541	+	Intron	INS	-	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155718546	155718546	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX3	50508	broad.mit.edu	37	6	155728436	155728436	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX4	50507	broad.mit.edu	37	11	89182728	89182728	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPIP	9284	broad.mit.edu	37	16	15026672	15026672	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPSR1	387129	broad.mit.edu	37	7	34889103	34889103	+	Intron	SNP	T	A	A	rs13240651		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPVF	64111	broad.mit.edu	37	7	25264661	25264661	+	3'UTR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR1H4	9971	broad.mit.edu	37	12	100926249	100926249	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR3C1	2908	broad.mit.edu	37	5	142780341	142780341	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR4A1	3164	broad.mit.edu	37	12	52451017	52451017	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115356858	115356858	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG1	3084	broad.mit.edu	37	8	32620796	32620796	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRP2	8828	broad.mit.edu	37	2	206659486	206659486	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79270235	79270235	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NT5E	4907	broad.mit.edu	37	6	86176908	86176908	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTF3	4908	broad.mit.edu	37	12	5603701	5603701	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTNG1	22854	broad.mit.edu	37	1	107961191	107961191	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUF2	83540	broad.mit.edu	37	1	163297217	163297217	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69115507	69115507	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP107	57122	broad.mit.edu	37	12	69115783	69115783	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP155	9631	broad.mit.edu	37	5	37328457	37328457	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135290909	135290909	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP214	8021	broad.mit.edu	37	9	134008335	134008335	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUPR1	26471	broad.mit.edu	37	16	28550293	28550293	+	5'UTR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF3	56000	broad.mit.edu	37	X	102337054	102337054	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS1	4938	broad.mit.edu	37	12	113357227	113357227	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228481316	228481316	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228492083	228492083	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OCRL	4952	broad.mit.edu	37	X	128724466	128724466	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODF3L2	284451	broad.mit.edu	37	19	474645	474645	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167553854	167553854	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183635384	183635384	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102302475	102302476	+	Frame_Shift_Ins	INS	-	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53602869	53602869	+	5'Flank	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFML2A	169611	broad.mit.edu	37	9	127563570	127563570	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPLAH	26873	broad.mit.edu	37	8	145113186	145113186	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTC	26254	broad.mit.edu	37	1	203472096	203472096	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPTN	10133	broad.mit.edu	37	10	13154609	13154609	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A2	341276	broad.mit.edu	37	11	6890907	6890907	+	5'Flank	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A5	144124	broad.mit.edu	37	11	6867641	6867641	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10A6	390093	broad.mit.edu	37	11	7949817	7949817	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AG1	282770	broad.mit.edu	37	11	55735206	55735206	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10S1	219873	broad.mit.edu	37	11	123847636	123847636	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR14C36	127066	broad.mit.edu	37	1	248512220	248512220	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1Q1	158131	broad.mit.edu	37	9	125377019	125377019	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1Q1	158131	broad.mit.edu	37	9	125377246	125377246	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2A12	346525	broad.mit.edu	37	7	143792896	143792896	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C1	4993	broad.mit.edu	37	16	3406108	3406108	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2C3	81472	broad.mit.edu	37	1	247695456	247695456	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2F1	26211	broad.mit.edu	37	7	143657783	143657783	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248186220	248186220	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L13	284521	broad.mit.edu	37	1	248263048	248263048	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L2	26246	broad.mit.edu	37	1	248201677	248201677	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248366960	248366960	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M3	127062	broad.mit.edu	37	1	248367211	248367211	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T11	127077	broad.mit.edu	37	1	248790328	248790328	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248813331	248813331	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248551769	248551769	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D1	26689	broad.mit.edu	37	17	56232399	56232399	+	5'Flank	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247335	56247335	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D9	390199	broad.mit.edu	37	11	59283042	59283042	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4M2	390538	broad.mit.edu	37	15	22369125	22369125	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N5	390437	broad.mit.edu	37	14	20612581	20612581	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4Q3	441669	broad.mit.edu	37	14	20216413	20216413	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4X1	390113	broad.mit.edu	37	11	48285662	48285662	+	Frame_Shift_Del	DEL	T	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51V1	283111	broad.mit.edu	37	11	5221647	5221647	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52E4	390081	broad.mit.edu	37	11	5905755	5905755	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N5	390075	broad.mit.edu	37	11	5799839	5799839	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5A2	219981	broad.mit.edu	37	11	59190327	59190327	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B21	219968	broad.mit.edu	37	11	58275014	58275014	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H6	79295	broad.mit.edu	37	3	97983473	97983473	+	Silent	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K3	403277	broad.mit.edu	37	3	98109951	98109951	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5K4	403278	broad.mit.edu	37	3	98072866	98072866	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579396	55579396	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L2	26338	broad.mit.edu	37	11	55594660	55594660	+	5'Flank	DEL	T	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M11	219487	broad.mit.edu	37	11	56310201	56310201	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C1	390321	broad.mit.edu	37	12	55715172	55715172	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6C75	390323	broad.mit.edu	37	12	55759747	55759747	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6Y1	391112	broad.mit.edu	37	1	158517172	158517172	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORM1	5004	broad.mit.edu	37	9	117086000	117086000	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL7	114881	broad.mit.edu	37	17	45891033	45891033	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL7	114881	broad.mit.edu	37	17	45891105	45891105	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUB2	78990	broad.mit.edu	37	14	94505175	94505175	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7B	56957	broad.mit.edu	37	1	149915923	149915923	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXR1	55074	broad.mit.edu	37	8	107752601	107752601	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX3	5024	broad.mit.edu	37	11	57114659	57114659	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PABPC1L	80336	broad.mit.edu	37	20	43545597	43545597	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PACRG	135138	broad.mit.edu	37	6	163736062	163736062	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PADI4	23569	broad.mit.edu	37	1	17634563	17634563	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAFAH2	5051	broad.mit.edu	37	1	26300892	26300892	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALB2	79728	broad.mit.edu	37	16	23652427	23652427	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPL	390928	broad.mit.edu	37	19	39589816	39589816	+	Intron	DEL	T	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLG	64895	broad.mit.edu	37	2	60987327	60987327	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176525345	176525345	+	5'UTR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176564507	176564507	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176709119	176709120	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206118211	206118211	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162137128	162137128	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122419622	122419622	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP14	54625	broad.mit.edu	37	3	122437240	122437240	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP15	165631	broad.mit.edu	37	3	122354971	122354971	+	3'UTR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX2	5076	broad.mit.edu	37	10	102541203	102541203	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31811521	31811521	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCBP3	54039	broad.mit.edu	37	21	47319565	47319565	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91134002	91134002	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91238241	91238241	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873567	91873567	+	Silent	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11X	27328	broad.mit.edu	37	X	91873596	91873596	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH11Y	83259	broad.mit.edu	37	Y	5441348	5441348	+	Intron	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH20	64881	broad.mit.edu	37	13	61987001	61987001	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA3	56145	broad.mit.edu	37	5	140182821	140182821	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA9	9752	broad.mit.edu	37	5	140229828	140229828	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB14	56122	broad.mit.edu	37	5	140605336	140605336	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB15	56121	broad.mit.edu	37	5	140627001	140627002	+	Frame_Shift_Del	DEL	GC	-	-	rs17844634		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531911	140531911	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA10	56106	broad.mit.edu	37	5	140794977	140794977	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719051	140719051	+	Silent	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140719959	140719959	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA2	56113	broad.mit.edu	37	5	140720708	140720708	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA3	56112	broad.mit.edu	37	5	140723873	140723873	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB3	56102	broad.mit.edu	37	5	140750326	140750326	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCK2	5106	broad.mit.edu	37	14	24567693	24567693	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82544020	82544020	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82581186	82581186	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47766213	47766213	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNT	5116	broad.mit.edu	37	21	47819834	47819834	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65384435	65384435	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71576130	71576130	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK6	5046	broad.mit.edu	37	15	101888091	101888091	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCYT1A	5130	broad.mit.edu	37	3	195975269	195975269	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD10	11235	broad.mit.edu	37	3	167413436	167413436	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE10A	10846	broad.mit.edu	37	6	165863891	165863891	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178740728	178740728	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31864497	31864497	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE3B	5140	broad.mit.edu	37	11	14880520	14880520	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6G	5148	broad.mit.edu	37	17	79620334	79620334	+	Missense_Mutation	SNP	A	G	G	rs150256730		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRA	5156	broad.mit.edu	37	4	55130019	55130019	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149510264	149510264	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDGFRB	5159	broad.mit.edu	37	5	149515439	149515439	+	Nonsense_Mutation	SNP	C	A	A	rs148853962	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122811415	122811415	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDK2	5164	broad.mit.edu	37	17	48184161	48184161	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPK1	5170	broad.mit.edu	37	16	2646042	2646042	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZD2	23037	broad.mit.edu	37	5	31799670	31799670	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEAR1	375033	broad.mit.edu	37	1	156874598	156874598	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEG3	5178	broad.mit.edu	37	19	57325536	57325537	+	Nonsense_Mutation	DNP	GG	CA	CA	rs139570920	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PET112L	5188	broad.mit.edu	37	4	152640682	152640682	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PF4	5196	broad.mit.edu	37	4	74847081	74847081	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKL	5211	broad.mit.edu	37	21	45738419	45738419	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAM1	5223	broad.mit.edu	37	10	99192100	99192100	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAP1	80055	broad.mit.edu	37	2	197767540	197767540	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD1	84547	broad.mit.edu	37	6	28252037	28252037	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD4	161779	broad.mit.edu	37	15	34396295	34396295	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153317628	153317628	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF6	84295	broad.mit.edu	37	X	133559234	133559234	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHKB	5257	broad.mit.edu	37	16	47497968	47497968	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDA1	22822	broad.mit.edu	37	12	76424431	76424431	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB1	23187	broad.mit.edu	37	11	118509945	118509945	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHOSPHO2	493911	broad.mit.edu	37	2	170557488	170557488	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PICK1	9463	broad.mit.edu	37	22	38470903	38470903	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PID1	55022	broad.mit.edu	37	2	229890756	229890756	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGK	10026	broad.mit.edu	37	1	77629531	77629531	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGL	9487	broad.mit.edu	37	17	16203251	16203251	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIGN	23556	broad.mit.edu	37	18	59739950	59739950	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CA	5290	broad.mit.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	A	A	rs104886003		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CB	5291	broad.mit.edu	37	3	138461618	138461618	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106515263	106515263	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CG	5294	broad.mit.edu	37	7	106526625	106526625	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R5	23533	broad.mit.edu	37	17	8791421	8791421	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81198331	81198331	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1L2	114780	broad.mit.edu	37	16	81232343	81232343	+	Silent	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD1	5310	broad.mit.edu	37	16	2169081	2169081	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51524215	51524215	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51915255	51915255	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4A	5321	broad.mit.edu	37	1	186901923	186901923	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAG1	5324	broad.mit.edu	37	8	57080660	57080660	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28855839	28855839	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB1	23236	broad.mit.edu	37	20	8698346	8698346	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9343456	9343456	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9382220	9382220	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9434103	9434103	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCD3	113026	broad.mit.edu	37	17	43195901	43195901	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCG1	5335	broad.mit.edu	37	20	39794392	39794392	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144991960	144991961	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD2	5352	broad.mit.edu	37	3	145790448	145790448	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PM20D2	135293	broad.mit.edu	37	6	89872060	89872060	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118199317	118199317	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIP	5406	broad.mit.edu	37	10	118313238	118313238	+	Splice_Site	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA6	10908	broad.mit.edu	37	19	7618919	7618919	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNRC1	10957	broad.mit.edu	37	6	89790770	89790770	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POF1B	79983	broad.mit.edu	37	X	84606347	84606347	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133214484	133214484	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR1A	25885	broad.mit.edu	37	2	86265795	86265795	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POMT1	10585	broad.mit.edu	37	9	134386704	134386704	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POSTN	10631	broad.mit.edu	37	13	38145671	38145671	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEA	340441	broad.mit.edu	37	8	43172404	43172404	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPEF2	5470	broad.mit.edu	37	4	76804054	76804054	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81741530	81741530	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	81762625	81762625	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203013218	203013218	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170489708	170489708	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1K	152926	broad.mit.edu	37	4	89192290	89192290	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1L	151742	broad.mit.edu	37	3	160672744	160672745	+	Intron	INS	-	T	T	rs142883004	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R2P3	153743	broad.mit.edu	37	5	156277799	156277799	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R7	5510	broad.mit.edu	37	2	242097260	242097260	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R8	5511	broad.mit.edu	37	1	28177047	28177047	+	3'UTR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM11	56981	broad.mit.edu	37	11	45245962	45245962	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM16	63976	broad.mit.edu	37	1	3342546	3342546	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522710	23522710	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522995	23522995	+	Splice_Site	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRELID2	153768	broad.mit.edu	37	5	145202688	145202688	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186276051	186276051	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRICKLE1	144165	broad.mit.edu	37	12	42859131	42859131	+	Intron	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57372237	57372237	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57467044	57467044	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRIM2	5558	broad.mit.edu	37	6	57512650	57512650	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKACB	5567	broad.mit.edu	37	1	84663368	84663368	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCI	5584	broad.mit.edu	37	3	169997970	169997970	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48733455	48733455	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKG1	5592	broad.mit.edu	37	10	53921601	53921601	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRM2	5620	broad.mit.edu	37	16	11370155	11370155	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRMT3	10196	broad.mit.edu	37	11	20419024	20419024	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRND	23627	broad.mit.edu	37	20	4705650	4705650	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRODH2	58510	broad.mit.edu	37	19	36303208	36303208	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROS1	5627	broad.mit.edu	37	3	93625105	93625105	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROZ	8858	broad.mit.edu	37	13	113814287	113814287	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF6	24148	broad.mit.edu	37	20	62612740	62612740	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF8	10594	broad.mit.edu	37	17	1563786	1563786	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR11	55771	broad.mit.edu	37	17	57247240	57247240	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23A	729627	broad.mit.edu	37	3	138724871	138724871	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR25	388199	broad.mit.edu	37	16	855729	855729	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS21	10942	broad.mit.edu	37	16	2871586	2871586	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43351978	43351978	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB5	5693	broad.mit.edu	37	14	23504054	23504054	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB7	5695	broad.mit.edu	37	9	127177791	127177791	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTCHD2	57540	broad.mit.edu	37	1	11577583	11577583	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGDR	5729	broad.mit.edu	37	14	52735298	52735298	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGDR	5729	broad.mit.edu	37	14	52735432	52735432	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTP4A3	11156	broad.mit.edu	37	8	142432293	142432293	+	5'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN11	5781	broad.mit.edu	37	12	112924336	112924336	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPN20B	26095	broad.mit.edu	37	10	48771317	48771317	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198672411	198672411	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8521381	8521381	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8748051	8748051	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRJ	5795	broad.mit.edu	37	11	48142858	48142858	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128312508	128312508	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128411061	128411061	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRM	5797	broad.mit.edu	37	18	7774262	7774262	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15699587	15699587	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71286868	71286869	+	Intron	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40730966	40730966	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRU	10076	broad.mit.edu	37	1	29606079	29606079	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUM1	9698	broad.mit.edu	37	1	31409385	31409385	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PURG	29942	broad.mit.edu	37	8	30890181	30890181	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PVRL3	25945	broad.mit.edu	37	3	110830863	110830863	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52469407	52469407	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDN	7837	broad.mit.edu	37	2	1658156	1658156	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYDC2	152138	broad.mit.edu	37	3	191179171	191179171	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158906820	158906820	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158913640	158913640	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158913661	158913661	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QKI	9444	broad.mit.edu	37	6	163983080	163983080	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QTRT1	81890	broad.mit.edu	37	19	10822729	10822729	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP3	9727	broad.mit.edu	37	16	538915	538915	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB11FIP4	84440	broad.mit.edu	37	17	29848854	29848854	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB27B	5874	broad.mit.edu	37	18	52546615	52546615	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220427267	220427267	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB8A	4218	broad.mit.edu	37	19	16238849	16238849	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95412520	95412520	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1AP1	55974	broad.mit.edu	37	1	155121291	155121291	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAG1	5896	broad.mit.edu	37	11	36595976	36595976	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAI14	26064	broad.mit.edu	37	5	34814884	34814884	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36147196	36147196	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPB	57148	broad.mit.edu	37	20	37146248	37146248	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARS	5917	broad.mit.edu	37	5	167943903	167943903	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASGRF1	5923	broad.mit.edu	37	15	79317612	79317612	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASSF2	9770	broad.mit.edu	37	20	4776436	4776436	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RB1	5925	broad.mit.edu	37	13	49033954	49033954	+	Missense_Mutation	SNP	C	G	G	rs3092903		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24583448	24583448	+	Frame_Shift_Del	DEL	A	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBL2	5934	broad.mit.edu	37	16	53513070	53513070	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114384275	114384275	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RC3H1	149041	broad.mit.edu	37	1	173916443	173916443	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCHY1	25898	broad.mit.edu	37	4	76439535	76439535	+	5'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH11	51109	broad.mit.edu	37	14	68159752	68159752	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79313658	79313658	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385532	79385532	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103270661	103270661	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103276759	103276759	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85571881	85571881	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RETSAT	54884	broad.mit.edu	37	2	85573370	85573370	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RET	5979	broad.mit.edu	37	10	43611893	43611893	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFWD2	64326	broad.mit.edu	37	1	176104034	176104034	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RG9MTD1	54931	broad.mit.edu	37	3	101283640	101283640	+	Silent	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS12	6002	broad.mit.edu	37	4	3319858	3319858	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS18	64407	broad.mit.edu	37	1	192153479	192153479	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241031872	241031872	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS7	6000	broad.mit.edu	37	1	241033460	241033460	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS8	85397	broad.mit.edu	37	1	182615882	182615882	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS9	8787	broad.mit.edu	37	17	63220917	63220917	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHCG	51458	broad.mit.edu	37	15	90030080	90030080	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOBTB3	22836	broad.mit.edu	37	5	95067575	95067575	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIC8B	55188	broad.mit.edu	37	12	107279815	107279815	+	3'UTR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130897050	130897050	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130912820	130912820	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMBP2	23504	broad.mit.edu	37	12	130919333	130919333	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105257017	105257017	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIN3	79890	broad.mit.edu	37	14	93142837	93142837	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40695232	40695232	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87121888	87121888	+	Intron	SNP	C	G	G	rs148358372	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5B	64777	broad.mit.edu	37	5	177570878	177570878	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASEH1	246243	broad.mit.edu	37	2	3597828	3597828	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF160	26046	broad.mit.edu	37	21	30307364	30307364	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF166	115992	broad.mit.edu	37	16	88765944	88765944	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF2	6045	broad.mit.edu	37	1	185067546	185067546	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF43	54894	broad.mit.edu	37	17	56435120	56435120	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNGTT	8732	broad.mit.edu	37	6	89324034	89324034	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO3	64221	broad.mit.edu	37	11	124740583	124740583	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROCK2	9475	broad.mit.edu	37	2	11484214	11484214	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROS1	6098	broad.mit.edu	37	6	117683690	117683690	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPE65	6121	broad.mit.edu	37	1	68895425	68895425	+	3'UTR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPF1	80135	broad.mit.edu	37	1	84962049	84962049	+	Missense_Mutation	SNP	A	G	G	rs147803982	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPGRIP1L	23322	broad.mit.edu	37	16	53709056	53709056	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS12	6206	broad.mit.edu	37	6	133137759	133137759	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS27A	6233	broad.mit.edu	37	2	55461876	55461876	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA2	6196	broad.mit.edu	37	6	166944945	166944945	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS6KA4	8986	broad.mit.edu	37	11	64137984	64137984	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPTN	126638	broad.mit.edu	37	1	152128437	152128437	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RQCD1	9125	broad.mit.edu	37	2	219457009	219457009	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP12	23223	broad.mit.edu	37	10	99126871	99126871	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77394618	77394618	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPO1	284654	broad.mit.edu	37	1	38095426	38095426	+	5'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTF1	23168	broad.mit.edu	37	15	41771180	41771180	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTL1	388015	broad.mit.edu	37	14	101349375	101349375	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUVBL2	10856	broad.mit.edu	37	19	49518853	49518853	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237732601	237732601	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237872473	237872473	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237982348	237982348	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A10	6281	broad.mit.edu	37	1	151958812	151958812	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMHD1	25939	broad.mit.edu	37	20	35521455	35521455	+	Silent	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS1	22870	broad.mit.edu	37	19	55743224	55743224	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBSN	374897	broad.mit.edu	37	19	36014365	36014365	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAMP3	10067	broad.mit.edu	37	1	155228756	155228756	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCAND3	114821	broad.mit.edu	37	6	28543098	28543098	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCD5	79966	broad.mit.edu	37	4	83602054	83602054	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCEL	8796	broad.mit.edu	37	13	78187957	78187957	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB1A1	7356	broad.mit.edu	37	11	62186652	62186652	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGB1D2	10647	broad.mit.edu	37	11	62011191	62011191	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGBL	284402	broad.mit.edu	37	19	35085417	35085417	+	Missense_Mutation	SNP	C	A	A	rs138254432	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38764810	38764810	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38938322	38938322	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN1A	6323	broad.mit.edu	37	2	166848003	166848003	+	Missense_Mutation	SNP	G	A	A	rs121917956	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN2A	6326	broad.mit.edu	37	2	166183487	166183487	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165971899	165971899	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165987863	165987863	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622670	38622670	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167318937	167318937	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1A	6337	broad.mit.edu	37	12	6464865	6464865	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCO1	6341	broad.mit.edu	37	17	10600752	10600752	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCTR	6344	broad.mit.edu	37	2	120204464	120204464	+	Intron	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE3	222663	broad.mit.edu	37	6	35195260	35195260	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4248017	4248017	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139368707	139368707	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC22B	9554	broad.mit.edu	37	1	145115775	145115775	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102255201	102255201	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2L	9728	broad.mit.edu	37	15	49319461	49319461	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169572376	169572376	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84644268	84644268	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3F	6405	broad.mit.edu	37	3	50224244	50224244	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3G	56920	broad.mit.edu	37	3	52472194	52472194	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6C	10500	broad.mit.edu	37	1	151107505	151107505	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA7A	8482	broad.mit.edu	37	15	74703902	74703902	+	Silent	SNP	G	A	A	rs145844323	byFrequency	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT5	5413	broad.mit.edu	37	22	19707146	19707146	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB11	89778	broad.mit.edu	37	18	61390292	61390292	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERTAD2	9792	broad.mit.edu	37	2	64863200	64863200	+	Nonsense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6	124925	broad.mit.edu	37	17	27296771	27296771	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFXN4	119559	broad.mit.edu	37	10	120917060	120917060	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGIP1	84251	broad.mit.edu	37	1	67145492	67145492	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGK1	6446	broad.mit.edu	37	6	134496001	134496001	+	5'UTR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGMS1	259230	broad.mit.edu	37	10	52066816	52066816	+	3'UTR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28883956	28883956	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3D20	201175	broad.mit.edu	37	17	43506963	43506963	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3GLB2	56904	broad.mit.edu	37	9	131774573	131774573	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51200330	51200330	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHANK1	50944	broad.mit.edu	37	19	51219627	51219627	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHC4	399694	broad.mit.edu	37	15	49159963	49159963	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHD	56961	broad.mit.edu	37	19	4288274	4288274	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHFM1	7979	broad.mit.edu	37	7	96303020	96303020	+	3'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHOX	6473	broad.mit.edu	37	X	592021	592021	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIAE	54414	broad.mit.edu	37	11	124508723	124508723	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3675341	3675341	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51958044	51958044	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SILV	6490	broad.mit.edu	37	12	56359817	56359817	+	5'UTR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPG	55423	broad.mit.edu	37	20	1629559	1629559	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIX3	6496	broad.mit.edu	37	2	45170024	45170024	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164793678	164793678	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP1	8631	broad.mit.edu	37	17	46474063	46474064	+	Missense_Mutation	DNP	CC	AG	AG			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43246075	43246075	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43247870	43247870	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A9	220963	broad.mit.edu	37	10	61444122	61444122	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A3	10786	broad.mit.edu	37	6	25845842	25845843	+	Intron	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A7	57030	broad.mit.edu	37	19	49934226	49934226	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC18A1	6570	broad.mit.edu	37	8	20004895	20004895	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC19A1	6573	broad.mit.edu	37	21	46936148	46936148	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A6	6511	broad.mit.edu	37	19	15083604	15083604	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC1A7	6512	broad.mit.edu	37	1	53571315	53571315	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63059221	63059221	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A14	9389	broad.mit.edu	37	3	38359481	38359481	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A2	6582	broad.mit.edu	37	6	160679775	160679775	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A3	57419	broad.mit.edu	37	20	19665898	19665898	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A46	91137	broad.mit.edu	37	5	110083920	110083920	+	Silent	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205884139	205884139	+	3'UTR	SNP	G	T	T	rs147712135		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A9	115019	broad.mit.edu	37	1	205892626	205892626	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A2	9153	broad.mit.edu	37	15	45559991	45559991	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86894169	86894169	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC29A1	2030	broad.mit.edu	37	6	44200166	44200166	+	Splice_Site	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC30A7	148867	broad.mit.edu	37	1	101376791	101376791	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC31A2	1318	broad.mit.edu	37	9	115924867	115924867	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118475757	118475757	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118598702	118598702	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F1	222553	broad.mit.edu	37	6	118598709	118598709	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35F3	148641	broad.mit.edu	37	1	234041292	234041292	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A2	153201	broad.mit.edu	37	5	150715005	150715005	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC39A2	29986	broad.mit.edu	37	14	21469627	21469627	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	76084831	76084831	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A11	83959	broad.mit.edu	37	20	3210490	3210490	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1AP	22950	broad.mit.edu	37	2	27886959	27886959	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A1	6523	broad.mit.edu	37	22	32495224	32495224	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A16	28968	broad.mit.edu	37	19	49793479	49793479	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A10	56301	broad.mit.edu	37	19	33716539	33716539	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A13	157724	broad.mit.edu	37	8	87229891	87229891	+	Silent	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40656956	40656956	+	Silent	SNP	T	C	C	rs149690605		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A2	6549	broad.mit.edu	37	2	103300888	103300888	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143271268	143271268	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20874895	20874895	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20525945	20525945	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168187941	168187941	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168310299	168310299	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLITRK2	84631	broad.mit.edu	37	X	144906017	144906017	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCA1	6594	broad.mit.edu	37	X	128649712	128649712	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC1B	27127	broad.mit.edu	37	22	45755640	45755640	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112350356	112350356	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC5	23137	broad.mit.edu	37	9	72938274	72938274	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18864947	18864947	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG7	9887	broad.mit.edu	37	1	183518771	183518771	+	Intron	DEL	A	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMPD4	55627	broad.mit.edu	37	2	130930848	130930848	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMR3A	26952	broad.mit.edu	37	4	71227800	71227800	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMURF2	64750	broad.mit.edu	37	17	62552157	62552157	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	245912968	245912968	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC4	6621	broad.mit.edu	37	9	139275905	139275905	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-13	100033450	broad.mit.edu	37	15	25434751	25434751	+	5'Flank	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNORD115-39	100033813	broad.mit.edu	37	15	25486832	25486832	+	5'Flank	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX13	23161	broad.mit.edu	37	7	17885167	17885167	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX14	57231	broad.mit.edu	37	6	86223826	86223826	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOCS6	9306	broad.mit.edu	37	18	67992312	67992312	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108377793	108377793	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108431096	108431096	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP100	6672	broad.mit.edu	37	2	231405415	231405415	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140	11262	broad.mit.edu	37	2	231152715	231152715	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG6	9576	broad.mit.edu	37	10	22675676	22675676	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPANXN2	494119	broad.mit.edu	37	X	142795501	142795501	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151043710	151043710	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172835341	172835341	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172835417	172835417	+	Silent	SNP	C	G	G	rs141312480	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA19	219938	broad.mit.edu	37	11	133714961	133714962	+	Intron	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA2L	124044	broad.mit.edu	37	16	89763699	89763699	+	3'UTR	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIC	121599	broad.mit.edu	37	12	101873243	101873244	+	Intron	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOPL	339745	broad.mit.edu	37	2	139308360	139308360	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOPL	339745	broad.mit.edu	37	2	139310355	139310355	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158580966	158580966	+	3'UTR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	40995970	40995970	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTBN4	57731	broad.mit.edu	37	19	41026137	41026137	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTLC3	55304	broad.mit.edu	37	20	13029632	13029632	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SR140	23350	broad.mit.edu	37	3	142735878	142735878	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRD5A2	6716	broad.mit.edu	37	2	31805958	31805958	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9290551	9290552	+	Intron	DNP	TC	GA	GA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2809749	2809749	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2815031	2815031	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149508066	149508066	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSX8	280659	broad.mit.edu	37	X	52659602	52659602	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST18	9705	broad.mit.edu	37	8	53079696	53079696	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GAL1	6480	broad.mit.edu	37	3	186760358	186760358	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC4	27090	broad.mit.edu	37	9	130676970	130676970	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104042690	104042690	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAG3	10734	broad.mit.edu	37	7	99802356	99802356	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAT3	6774	broad.mit.edu	37	17	40491337	40491337	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63962113	63962113	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STIP1	10963	broad.mit.edu	37	11	63965146	63965146	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5400080	5400080	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STMN3	50861	broad.mit.edu	37	20	62275217	62275217	+	Silent	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STOM	2040	broad.mit.edu	37	9	124103597	124103597	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STRA8	346673	broad.mit.edu	37	7	134925343	134925343	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX11	8676	broad.mit.edu	37	6	144508681	144508681	+	3'UTR	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX16	8675	broad.mit.edu	37	20	57242651	57242651	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP4	252983	broad.mit.edu	37	17	53155296	53155296	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	905691	905691	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT3H	8464	broad.mit.edu	37	6	44900535	44900535	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUPT5H	6829	broad.mit.edu	37	19	39955488	39955488	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUV420H1	51111	broad.mit.edu	37	11	67938611	67938611	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYK	6850	broad.mit.edu	37	9	93637067	93637067	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYN2	6854	broad.mit.edu	37	3	12232139	12232139	+	3'UTR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152737697	152737697	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNJ2	8871	broad.mit.edu	37	6	158495792	158495792	+	Intron	DEL	T	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT10	341359	broad.mit.edu	37	12	33532835	33532835	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYTL4	94121	broad.mit.edu	37	X	99945216	99945216	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAC1	6863	broad.mit.edu	37	7	97362212	97362212	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120800459	120800459	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF2	6873	broad.mit.edu	37	8	120803609	120803609	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF4	6874	broad.mit.edu	37	20	60588024	60588024	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R16	50833	broad.mit.edu	37	7	122635274	122635274	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAS2R50	259296	broad.mit.edu	37	12	11138692	11138693	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D15	64786	broad.mit.edu	37	12	72266764	72266764	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D22A	25771	broad.mit.edu	37	22	47393642	47393642	+	Intron	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D23	55773	broad.mit.edu	37	3	100038107	100038107	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D3	729873	broad.mit.edu	37	17	36352517	36352517	+	5'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D8B	54885	broad.mit.edu	37	X	106091643	106091643	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBP	6908	broad.mit.edu	37	6	170880446	170880446	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEA3	6920	broad.mit.edu	37	1	23713895	23713895	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEAL6	158931	broad.mit.edu	37	X	101396439	101396439	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152057805	152057805	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHP	84260	broad.mit.edu	37	12	110354442	110354442	+	3'UTR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCL1B	9623	broad.mit.edu	37	14	96152706	96152706	+	5'Flank	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156831336	156831336	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDO2	6999	broad.mit.edu	37	4	156841118	156841118	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDP1	55775	broad.mit.edu	37	14	90429553	90429553	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD10	126668	broad.mit.edu	37	1	154517340	154517340	+	Silent	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECPR2	9895	broad.mit.edu	37	14	102900761	102900761	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65155420	65155420	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEKT3	64518	broad.mit.edu	37	17	15211847	15211847	+	Intron	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56688799	56688799	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30703090	30703090	+	Silent	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX15	56154	broad.mit.edu	37	8	30706080	30706080	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2A	7020	broad.mit.edu	37	6	10419782	10419782	+	5'UTR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFB2M	64216	broad.mit.edu	37	1	246727853	246727853	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFCP2	7024	broad.mit.edu	37	12	51565960	51565960	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGFB1I1	7041	broad.mit.edu	37	16	31485792	31485792	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM6	343641	broad.mit.edu	37	20	2375793	2375793	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133931788	133931788	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THRAP3	9967	broad.mit.edu	37	1	36752349	36752349	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11468641	11468641	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11501698	11501698	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137988779	137988779	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIFAB	497189	broad.mit.edu	37	5	134785271	134785271	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TJP1	7082	broad.mit.edu	37	15	30010302	30010302	+	Missense_Mutation	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL1	8277	broad.mit.edu	37	X	153556465	153556466	+	Intron	DEL	TG	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM4SF5	9032	broad.mit.edu	37	17	4686374	4686374	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TM9SF2	9375	broad.mit.edu	37	13	100169954	100169954	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75366861	75366861	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC1	117531	broad.mit.edu	37	9	75420388	75420388	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	125811149	125811149	+	5'Flank	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	125835017	125835017	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126137174	126137174	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132C	92293	broad.mit.edu	37	12	128899611	128899611	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM146	257062	broad.mit.edu	37	19	5737339	5737339	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM14A	28978	broad.mit.edu	37	6	52546792	52546792	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM183A	92703	broad.mit.edu	37	1	202984222	202984222	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM192	201931	broad.mit.edu	37	4	166009572	166009572	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM195	392636	broad.mit.edu	37	7	15427053	15427053	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM225	338661	broad.mit.edu	37	11	123755530	123755530	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM48	55706	broad.mit.edu	37	1	54275475	54275475	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM71	137835	broad.mit.edu	37	8	133771110	133771110	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM99	147184	broad.mit.edu	37	17	38990925	38990925	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPO	7112	broad.mit.edu	37	12	98927517	98927517	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS11A	339967	broad.mit.edu	37	4	68797731	68797731	+	Missense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMPRSS6	164656	broad.mit.edu	37	22	37470637	37470637	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF1A	7132	broad.mit.edu	37	12	6443190	6443190	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNIK	23043	broad.mit.edu	37	3	170928949	170928949	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9619187	9619187	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI2	7136	broad.mit.edu	37	11	1861882	1861882	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175334239	175334239	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32029430	32029430	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNXB	7148	broad.mit.edu	37	6	32040127	32040127	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOM1L2	146691	broad.mit.edu	37	17	17764829	17764829	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOP1MT	116447	broad.mit.edu	37	8	144406078	144406078	+	Intron	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOR1AIP2	163590	broad.mit.edu	37	1	179815333	179815333	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42635070	42635070	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42679796	42679796	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42694333	42694333	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577537	7577537	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP63	8626	broad.mit.edu	37	3	189349318	189349318	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN1	53373	broad.mit.edu	37	12	113735129	113735129	+	3'UTR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPH1	7166	broad.mit.edu	37	11	18057531	18057531	+	Silent	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPM4	7171	broad.mit.edu	37	19	16204497	16204497	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186306192	186306192	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPSG1	25823	broad.mit.edu	37	16	1272110	1272110	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAF3IP3	80342	broad.mit.edu	37	1	209933482	209933482	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAIP	10293	broad.mit.edu	37	3	49866483	49866483	+	3'UTR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC6A	79090	broad.mit.edu	37	19	45667459	45667460	+	Frame_Shift_Ins	INS	-	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRERF1	55809	broad.mit.edu	37	6	42397215	42397215	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM16	10626	broad.mit.edu	37	17	15580879	15580879	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM2	23321	broad.mit.edu	37	4	154236944	154236944	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM3	10612	broad.mit.edu	37	11	6472482	6472482	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM40	135644	broad.mit.edu	37	6	30113897	30113898	+	Intron	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM49	57093	broad.mit.edu	37	11	89537464	89537465	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM55	84675	broad.mit.edu	37	8	67049306	67049306	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM56	81844	broad.mit.edu	37	7	100730380	100730380	+	5'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TROVE2	6738	broad.mit.edu	37	1	193053901	193053901	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPA1	8989	broad.mit.edu	37	8	72975803	72975803	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234846051	234846051	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRRAP	8295	broad.mit.edu	37	7	98560090	98560090	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRY6	154754	broad.mit.edu	37	7	142468304	142468305	+	Splice_Site	INS	-	TA	TA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSC2	7249	broad.mit.edu	37	16	2127477	2127477	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSG101	7251	broad.mit.edu	37	11	18541090	18541090	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSIX	9383	broad.mit.edu	37	X	73047154	73047154	+	RNA	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSPAN8	7103	broad.mit.edu	37	12	71551314	71551314	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC21B	79809	broad.mit.edu	37	2	166747500	166747500	+	Splice_Site	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC22	55001	broad.mit.edu	37	1	55253465	55253466	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC25	83538	broad.mit.edu	37	17	40095123	40095123	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC27	55622	broad.mit.edu	37	2	32897384	32897384	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC8	123016	broad.mit.edu	37	14	89338912	89338912	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTF2	8458	broad.mit.edu	37	1	117602821	117602821	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTK	7272	broad.mit.edu	37	6	80750061	80750061	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL2	83887	broad.mit.edu	37	6	167753987	167753987	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL4	9654	broad.mit.edu	37	2	219602866	219602866	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84399141	84399141	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179422207	179422208	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179427123	179427123	+	Silent	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179431317	179431317	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179441840	179441840	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179456358	179456358	+	Missense_Mutation	SNP	G	C	C	rs1560220		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179577936	179577951	+	Frame_Shift_Del	DEL	GGTGGTCTGGTATTTC	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179583172	179583172	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179604494	179604494	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179606578	179606578	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179640522	179640522	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179659090	179659090	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTPA	7274	broad.mit.edu	37	8	63974015	63974015	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH1	57348	broad.mit.edu	37	19	54947234	54947234	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH2	94015	broad.mit.edu	37	17	72248528	72248528	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUBB4	10382	broad.mit.edu	37	19	6501606	6501606	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUB	7275	broad.mit.edu	37	11	8122429	8122429	+	Silent	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TUSC3	7991	broad.mit.edu	37	8	15480671	15480671	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72094069	72094069	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYW1B	441250	broad.mit.edu	37	7	72267537	72267537	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68500215	68500215	+	Missense_Mutation	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68529668	68529668	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBASH3A	53347	broad.mit.edu	37	21	43833623	43833623	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4A	9354	broad.mit.edu	37	11	118243384	118243384	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10197141	10197141	+	Silent	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE4B	10277	broad.mit.edu	37	1	10240059	10240059	+	3'UTR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR4	23352	broad.mit.edu	37	1	19436750	19436750	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN2B	137886	broad.mit.edu	37	8	59358602	59358602	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCHL3	7347	broad.mit.edu	37	13	76143517	76143517	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2A1	10941	broad.mit.edu	37	4	70460846	70460846	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B15	7366	broad.mit.edu	37	4	69520853	69520853	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B4	7363	broad.mit.edu	37	4	70352502	70352502	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41290951	41290951	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20359605	20359605	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17738838	17738838	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC80	285175	broad.mit.edu	37	2	210642194	210642194	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPB1	51733	broad.mit.edu	37	22	24909188	24909188	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPB1	51733	broad.mit.edu	37	22	24911380	24911380	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF1	5976	broad.mit.edu	37	19	18958435	18958435	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPF1	5976	broad.mit.edu	37	19	18974852	18974852	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPK1B	7348	broad.mit.edu	37	3	118905622	118905622	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216019485	216019485	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216062335	216062336	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP20	10868	broad.mit.edu	37	9	132618664	132618664	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP24	23358	broad.mit.edu	37	1	55560837	55560837	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP28	57646	broad.mit.edu	37	11	113670248	113670248	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP34	9736	broad.mit.edu	37	2	61622307	61622307	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP7	7874	broad.mit.edu	37	16	8988689	8988689	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP9X	8239	broad.mit.edu	37	X	41082708	41082708	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP6	55813	broad.mit.edu	37	17	30219711	30219711	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19340428	19340428	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	22498428	22498428	+	IGR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31006332	31006332	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37627276	37627276	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38744179	38744179	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38894719	38894719	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43201920	43201920	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	43206582	43206582	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	46215453	46215453	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	47708597	47708597	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	52444190	52444190	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8556304	8556304	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8557064	8557064	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	93526786	93526786	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	119474549	119474549	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15009746	15009746	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18175169	18175169	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	18211446	18211446	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4744403	4744403	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49089137	49089137	+	IGR	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49103981	49103981	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	5058536	5058536	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55071477	55071477	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259178	55259178	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259275	55259275	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55259403	55259403	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55554587	55554587	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57970514	57970514	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57983404	57983404	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6079280	6079280	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	69552117	69552117	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	74782393	74782394	+	IGR	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89804284	89804284	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94782884	94782884	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98435959	98435959	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	10658589	10658589	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	114227518	114227518	+	IGR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127562245	127562245	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127828618	127828618	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	131777416	131777416	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34362516	34362516	+	IGR	SNP	C	A	A	rs150956035	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34403155	34403155	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	37938448	37938449	+	IGR	DNP	TG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38596557	38596557	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43072878	43072878	+	IGR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	53125886	53125886	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63666033	63666033	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	75057708	75057708	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77054233	77054233	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9633321	9633321	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240647	19240647	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240796	19240796	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19700782	19700782	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19703303	19703303	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19761327	19761327	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19943708	19943708	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65885180	65885180	+	IGR	SNP	C	T	T	rs148144851	by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	66362867	66362867	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68485286	68485286	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73834766	73834766	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79483598	79483598	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90013400	90013400	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	97537708	97537708	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19412628	19412628	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19422489	19422489	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19500193	19500193	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19806833	19806834	+	IGR	DEL	CA	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20097342	20097342	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137700	20137700	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137938	20137938	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20147766	20147766	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29142890	29142890	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82382698	82382698	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82384234	82384234	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	95098164	95098164	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20456739	20456739	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20456819	20456819	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20481787	20481787	+	IGR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	21009078	21009078	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	43231846	43231846	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	50088125	50088125	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	56299074	56299074	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78269462	78269462	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	78277898	78277898	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	79021375	79021375	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	80237196	80237196	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32170597	32170597	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33401552	33401552	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33498233	33498233	+	IGR	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34723917	34723917	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	51098222	51098222	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	61089725	61089725	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	64294413	64294413	+	IGR	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76268827	76268828	+	IGR	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	16586860	16586860	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25985840	25985841	+	IGR	DNP	GG	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25991642	25991642	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	26603253	26603253	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	28880589	28880589	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51513244	51513244	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76522807	76522807	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12067463	12067463	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13140256	13140256	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29542372	29542373	+	IGR	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57865227	57865227	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22869260	22869260	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22966648	22966648	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22966834	22966835	+	IGR	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29281990	29281990	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	35033209	35033209	+	IGR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	37499012	37499012	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	48298210	48298210	+	IGR	SNP	T	G	G	rs76251052		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	51499196	51499196	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	101736500	101736500	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	116107468	116107468	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148903213	148903213	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149094551	149094552	+	IGR	DNP	CA	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149103903	149103903	+	IGR	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149130360	149130361	+	IGR	DNP	CG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149262743	149262743	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164890802	164890802	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166245787	166245787	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17008492	17008492	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	17012509	17012509	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175014195	175014195	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	188663577	188663577	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	22649282	22649282	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242222734	242222734	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	243213996	243213996	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	246677802	246677802	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247655477	247655477	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248513040	248513040	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31960378	31960378	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	70997078	70997078	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	77165505	77165505	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79987888	79987888	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29873021	29873022	+	IGR	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	32801314	32801314	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	21112519	21112519	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24780660	24780660	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	28515731	28515731	+	IGR	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	47511072	47511072	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17339283	17339283	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	21421982	21421982	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34985763	34985763	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	42547581	42547581	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104112275	104112275	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	11491803	11491804	+	IGR	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117938719	117938719	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	128975487	128975487	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133020144	133020144	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133020361	133020361	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	136960626	136960626	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140426234	140426234	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	152043009	152043009	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162357930	162357930	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570353	168570353	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	187867297	187867297	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	196448074	196448074	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	210046715	210046715	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	234494804	234494804	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	78020119	78020119	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	79324087	79324087	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81426176	81426177	+	IGR	DNP	TA	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83084195	83084195	+	IGR	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91873100	91873100	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95637810	95637810	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	97696155	97696155	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145542144	145542144	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146994686	146994686	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	148704132	148704132	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	170671071	170671071	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183744113	183744113	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	194477434	194477434	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	1947528	1947528	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36809540	36809540	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98153202	98153202	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116685832	116685832	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	118497098	118497098	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	149447485	149447485	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	155445991	155445991	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69417582	69417582	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69894001	69894001	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	74952248	74952248	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107911131	107911131	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107912259	107912259	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108924197	108924197	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	115106414	115106414	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	137809658	137809658	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	14509501	14509501	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165456206	165456206	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	170793521	170793522	+	IGR	DNP	GG	TT	TT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23305129	23305129	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	25909917	25909917	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	26670729	26670729	+	IGR	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29001911	29001911	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41587909	41587909	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	62597807	62597807	+	IGR	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75206426	75206426	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	75374690	75374690	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	85383591	85383591	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92225539	92225539	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	92226493	92226493	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	99402414	99402414	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104465728	104465728	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122004170	122004170	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122004697	122004697	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	13521848	13521848	+	IGR	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	150299035	150299035	+	IGR	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	18367752	18367752	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	27236982	27236982	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	29385512	29385512	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	3177374	3177374	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	39926573	39926573	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	53246370	53246370	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547738	66547738	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	72260971	72260971	+	IGR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80775484	80775484	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80778990	80778990	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	86796123	86796123	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10492533	10492533	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	118591001	118591001	+	IGR	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399313	136399313	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142723188	142723188	+	IGR	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143658111	143658111	+	IGR	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707339	144707339	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	144707948	144707948	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	27498075	27498075	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46039300	46039300	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57245250	57245250	+	IGR	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57929177	57929177	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63028334	63028334	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63036147	63036147	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63099967	63099967	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6940191	6940191	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	76682356	76682356	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84613834	84613834	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	88141779	88141779	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	9767421	9767421	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106207492	106207492	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	111567965	111567965	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	11856810	11856810	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	120493094	120493094	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	34180924	34180924	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43308073	43308073	+	IGR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43308128	43308128	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5707236	5707236	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62115633	62115633	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	6981091	6981091	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85074842	85074842	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	32676429	32676429	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	38527363	38527363	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44154015	44154015	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	65635792	65635792	+	IGR	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67334110	67334110	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357348	68357348	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68429071	68429071	+	IGR	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68429075	68429075	+	IGR	SNP	G	T	T	rs111373367		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	74723256	74723256	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	95676717	95676717	+	IGR	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	95682194	95682194	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128176275	128176275	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	136743345	136743345	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141262944	141262944	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	143923018	143923018	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144712219	144712219	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	147134210	147134210	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26179641	26179641	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	38392795	38392795	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	48074080	48074080	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	52641944	52641944	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	55661220	55661220	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78580271	78580271	+	IGR	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89294985	89294985	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13241640	13241640	+	IGR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13568210	13568210	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13573100	13573100	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14092555	14092555	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	14093665	14093665	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	25511092	25511092	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28483573	28483573	+	IGR	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28485223	28485223	+	IGR	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28760991	28760991	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	28774432	28774432	+	IGR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	8310645	8310645	+	IGR	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	8783321	8783321	+	IGR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAC14	55697	broad.mit.edu	37	16	70819711	70819711	+	Missense_Mutation	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VCAN	1462	broad.mit.edu	37	5	82843744	82843744	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VENTX	27287	broad.mit.edu	37	10	135051554	135051554	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN2	8875	broad.mit.edu	37	6	133071118	133071118	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VNN3	55350	broad.mit.edu	37	6	133044201	133044201	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13A	23230	broad.mit.edu	37	9	79928819	79928819	+	Intron	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100830883	100830883	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62209737	62209737	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62274822	62274822	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13C	54832	broad.mit.edu	37	15	62315920	62315920	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS36	51028	broad.mit.edu	37	13	53007965	53007965	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS41	27072	broad.mit.edu	37	7	38791787	38791787	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS45	11311	broad.mit.edu	37	1	150039852	150039852	+	5'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS54	51542	broad.mit.edu	37	2	64171689	64171689	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184714270	184714270	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VTN	7448	broad.mit.edu	37	17	26694627	26694627	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAC	51322	broad.mit.edu	37	10	28905206	28905206	+	Nonsense_Mutation	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDFY3	23001	broad.mit.edu	37	4	85701338	85701338	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR17	116966	broad.mit.edu	37	4	177100852	177100852	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR35	57539	broad.mit.edu	37	2	20113375	20113375	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR44	54521	broad.mit.edu	37	X	117521236	117521236	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR66	144406	broad.mit.edu	37	12	122405864	122405864	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR67	93594	broad.mit.edu	37	8	124132407	124132407	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR75	84128	broad.mit.edu	37	2	190315685	190315685	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR91	29062	broad.mit.edu	37	7	134877936	134877936	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141416176	141416176	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WHSC1	7468	broad.mit.edu	37	4	1962886	1962886	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	970113	970113	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK2	65268	broad.mit.edu	37	9	95992262	95992262	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSB1	26118	broad.mit.edu	37	17	25621264	25621264	+	5'UTR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WSCD2	9671	broad.mit.edu	37	12	108618519	108618519	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWP2	11060	broad.mit.edu	37	16	69833148	69833148	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XAGE5	170627	broad.mit.edu	37	X	52840318	52840318	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30556135	30556135	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21823718	21823718	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XPO7	23039	broad.mit.edu	37	8	21827939	21827939	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC5	7520	broad.mit.edu	37	2	217039646	217039646	+	Intron	SNP	G	T	T	rs72954616	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRN1	54464	broad.mit.edu	37	3	142103595	142103595	+	Intron	SNP	T	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YEATS2	55689	broad.mit.edu	37	3	183474351	183474351	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YES1	7525	broad.mit.edu	37	18	733068	733068	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF5	81555	broad.mit.edu	37	5	143543672	143543672	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YLPM1	56252	broad.mit.edu	37	14	75295991	75295991	+	Missense_Mutation	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB22	9278	broad.mit.edu	37	6	33282996	33282996	+	Silent	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDBF2	57683	broad.mit.edu	37	2	207169613	207169613	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC19	131540	broad.mit.edu	37	3	195935386	195935386	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC1	29800	broad.mit.edu	37	16	67432712	67432712	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC22	283576	broad.mit.edu	37	14	77605913	77605913	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC3	51304	broad.mit.edu	37	3	44986647	44986647	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31791485	31791485	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZEB1	6935	broad.mit.edu	37	10	31809520	31809520	+	Silent	SNP	G	T	T	rs35238902	byFrequency;by1000genomes	TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX4	79776	broad.mit.edu	37	8	77767525	77767525	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFP112	7771	broad.mit.edu	37	19	44834051	44834051	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC2	7546	broad.mit.edu	37	13	100635008	100635010	+	In_Frame_Del	DEL	CCA	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZKSCAN5	23660	broad.mit.edu	37	7	99110023	99110023	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYM2	7750	broad.mit.edu	37	13	20579402	20579402	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMYND8	23613	broad.mit.edu	37	20	45927755	45927755	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF117	51351	broad.mit.edu	37	7	64453245	64453245	+	5'Flank	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF167	55888	broad.mit.edu	37	3	44621934	44621934	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF175	7728	broad.mit.edu	37	19	52076350	52076350	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF202	7753	broad.mit.edu	37	11	123598298	123598298	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6977119	6977119	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74639891	74639891	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22255770	22255770	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF257	113835	broad.mit.edu	37	19	22271507	22271507	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF268	10795	broad.mit.edu	37	12	133779191	133779191	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF274	10782	broad.mit.edu	37	19	58718164	58718164	+	Missense_Mutation	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF311	282890	broad.mit.edu	37	6	28964486	28964486	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF311	282890	broad.mit.edu	37	6	28971411	28971411	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF343	79175	broad.mit.edu	37	20	2474173	2474173	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF358	140467	broad.mit.edu	37	19	7585855	7585855	+	3'UTR	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF37A	7587	broad.mit.edu	37	10	38407837	38407837	+	3'UTR	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF488	118738	broad.mit.edu	37	10	48371464	48371464	+	Missense_Mutation	SNP	A	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF498	221785	broad.mit.edu	37	7	99220250	99220250	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF512B	57473	broad.mit.edu	37	20	62598958	62598958	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF517	340385	broad.mit.edu	37	8	146029285	146029286	+	Intron	DNP	CT	TA	TA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF521	25925	broad.mit.edu	37	18	22804911	22804911	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30934685	30934685	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30935922	30935922	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	30936282	30936282	+	Silent	SNP	C	A	A	rs141248439		TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF548	147694	broad.mit.edu	37	19	57901428	57901428	+	5'UTR	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF560	147741	broad.mit.edu	37	19	9580447	9580447	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	59081	59081	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	59969	59969	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF623	9831	broad.mit.edu	37	8	144733168	144733168	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF669	79862	broad.mit.edu	37	1	247263792	247263792	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF684	127396	broad.mit.edu	37	1	40998901	40998901	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF689	115509	broad.mit.edu	37	16	30616690	30616690	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF695	57116	broad.mit.edu	37	1	247163260	247163260	+	Silent	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF714	148206	broad.mit.edu	37	19	21300980	21300980	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF71	58491	broad.mit.edu	37	19	57133862	57133862	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134425434	134425434	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF761	388561	broad.mit.edu	37	19	53958024	53958024	+	Missense_Mutation	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF761	388561	broad.mit.edu	37	19	53960363	53960363	+	3'UTR	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185800564	185800564	+	Missense_Mutation	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF831	128611	broad.mit.edu	37	20	57768837	57768837	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF841	284371	broad.mit.edu	37	19	52568469	52568469	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238045820	238045820	+	Frame_Shift_Del	DEL	C	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	136268037	136268037	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN4	201516	broad.mit.edu	37	19	58189694	58189694	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSWIM5	57643	broad.mit.edu	37	1	45508771	45508771	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58120979	58120979	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	74564999	74564999	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22580304	22580304	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22987821	22987821	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102288248	102288248	+	Intron	SNP	C	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20489417	20489417	+	RNA	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20490261	20490261	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20495192	20495192	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20588753	20588753	+	Intron	SNP	T	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	29091498	29091498	+	Intron	SNP	A	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76073054	76073054	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	21561608	21561608	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33784729	33784730	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34741019	34741019	+	5'Flank	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	35037446	35037446	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25758423	25758423	+	RNA	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	24999147	24999147	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	15884920	15884920	+	RNA	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142810499	142810499	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142819317	142819317	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	148889624	148889624	+	RNA	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	211380931	211380931	+	Silent	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	57159888	57159891	+	Intron	DEL	CTTC	-	-			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132158629	132158630	+	5'Flank	DNP	TA	AT	AT			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133075453	133075453	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89278573	89278573	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89319826	89319826	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89890592	89890592	+	Missense_Mutation	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90043625	90043625	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90108737	90108737	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90249507	90249507	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180491779	180491779	+	Intron	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180538400	180538400	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	22423340	22423340	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135249037	135249037	+	5'Flank	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	3939158	3939158	+	5'Flank	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23972322	23972322	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24170704	24170704	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100551079	100551079	+	RNA	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142021006	142021006	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142124460	142124460	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142143954	142143954	+	Intron	SNP	G	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247473	142247473	+	Intron	SNP	A	G	G			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142470412	142470412	+	Intron	SNP	G	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142494148	142494148	+	Intron	SNP	C	A	A			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38407651	38407652	+	Intron	DNP	CC	AA	AA			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65183467	65183467	+	Intron	SNP	T	C	C			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57390197	57390197	+	Intron	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90747186	90747186	+	Missense_Mutation	SNP	C	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	51150737	51150737	+	Missense_Mutation	SNP	G	T	T			TCGA-05-4397-01A-01D-1265-08	TCGA-05-4397-10A-01D-1265-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
