Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7743313	7743313	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	8975130	8975130	+	5'Flank	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AACS	65985	broad.mit.edu	37	12	125618592	125618592	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AARS2	57505	broad.mit.edu	37	6	44274315	44274315	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASDH	132949	broad.mit.edu	37	4	57221506	57221506	+	Missense_Mutation	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AASS	10157	broad.mit.edu	37	7	121756792	121756792	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA7	10347	broad.mit.edu	37	19	1061853	1061853	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66928614	66928614	+	Silent	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17457561	17457561	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD1	215	broad.mit.edu	37	X	153001552	153001552	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG4	64137	broad.mit.edu	37	11	119029080	119029080	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM1	3983	broad.mit.edu	37	10	116203903	116203903	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABLIM3	22885	broad.mit.edu	37	5	148627520	148627520	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABP1	26	broad.mit.edu	37	7	150554886	150554886	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAD11	84129	broad.mit.edu	37	3	132294687	132294687	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAT1	38	broad.mit.edu	37	11	108002607	108002607	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACIN1	22985	broad.mit.edu	37	14	23547282	23547282	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT1	641371	broad.mit.edu	37	14	74008311	74008311	+	Missense_Mutation	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20432493	20432493	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20432712	20432712	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTN3	89	broad.mit.edu	37	11	66325509	66325509	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAD1	132612	broad.mit.edu	37	4	123336679	123336679	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127760258	127760258	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM17	6868	broad.mit.edu	37	2	9666271	9666271	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM18	8749	broad.mit.edu	37	8	39442037	39442037	+	5'Flank	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156915450	156915450	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156991374	156991374	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM20	8748	broad.mit.edu	37	14	70991507	70991507	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106067118	106067118	+	Intron	SNP	C	A	A	rs150823665	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM8	101	broad.mit.edu	37	10	135086591	135086591	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33881630	33881630	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS18	170692	broad.mit.edu	37	16	77325355	77325355	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTSL1	92949	broad.mit.edu	37	9	18574396	18574396	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	132051897	132051897	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH1A	124	broad.mit.edu	37	4	100229037	100229037	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147733751	147733751	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGAP2	116986	broad.mit.edu	37	12	58121198	58121198	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIRE	326	broad.mit.edu	37	21	45710773	45710773	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AK5	26289	broad.mit.edu	37	1	77752576	77752576	+	Intron	SNP	A	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP4	8852	broad.mit.edu	37	X	49962166	49962166	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C2	1646	broad.mit.edu	37	10	5040898	5040898	+	Missense_Mutation	SNP	G	C	C	rs139670873		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALOXE3	59344	broad.mit.edu	37	17	8012568	8012568	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56149385	56149385	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPL	249	broad.mit.edu	37	1	21890740	21890740	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT4	51378	broad.mit.edu	37	20	861993	861993	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKH	56172	broad.mit.edu	37	5	14751287	14751287	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKMY1	51281	broad.mit.edu	37	2	241421603	241421603	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92680673	92680673	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD23	200539	broad.mit.edu	37	2	97506548	97506548	+	Silent	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD24	170961	broad.mit.edu	37	19	4207248	4207248	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO7	50636	broad.mit.edu	37	2	242142823	242142824	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA1	301	broad.mit.edu	37	9	75775889	75775889	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36561669	36561669	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOC2	314	broad.mit.edu	37	17	40996835	40996835	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP2A1	160	broad.mit.edu	37	19	50309968	50309968	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1	322	broad.mit.edu	37	11	6422485	6422485	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARFGAP1	55738	broad.mit.edu	37	20	61907553	61907553	+	Splice_Site	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGEF7	8874	broad.mit.edu	37	13	111896599	111896599	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235377133	235377133	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARID4B	51742	broad.mit.edu	37	1	235418974	235418975	+	Splice_Site	DNP	CC	AA	AA			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN1	460	broad.mit.edu	37	1	176853381	176853381	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	119976440	119976440	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31312119	31312119	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31314323	31314324	+	Nonsense_Mutation	DNP	GG	CT	CT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31323015	31323015	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31324969	31324969	+	Silent	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATG2B	55102	broad.mit.edu	37	14	96770692	96770692	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP11A	23250	broad.mit.edu	37	13	113508590	113508590	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160106720	160106720	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1B1	481	broad.mit.edu	37	1	169099285	169099286	+	RNA	INS	-	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP7A	538	broad.mit.edu	37	X	77301004	77301004	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55317826	55317826	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117040882	117040882	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117185870	117185870	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
B3GALTL	145173	broad.mit.edu	37	13	31898026	31898026	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2L1	84726	broad.mit.edu	37	9	134353400	134353400	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT2	7916	broad.mit.edu	37	6	31604645	31604645	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAN	63827	broad.mit.edu	37	1	156622224	156622224	+	Silent	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCAS1	8537	broad.mit.edu	37	20	52561526	52561526	+	Missense_Mutation	SNP	G	A	A	rs147771144		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11A	53335	broad.mit.edu	37	2	60688324	60688324	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL2	596	broad.mit.edu	37	18	60985525	60985525	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BFSP2	8419	broad.mit.edu	37	3	133118800	133118800	+	5'UTR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BHMT	635	broad.mit.edu	37	5	78416224	78416224	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPER	168667	broad.mit.edu	37	7	34118549	34118549	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNC1	646	broad.mit.edu	37	15	83926181	83926181	+	3'UTR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BPNT1	10380	broad.mit.edu	37	1	220233191	220233191	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRAF	673	broad.mit.edu	37	7	140453155	140453155	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRF1	2972	broad.mit.edu	37	14	105687945	105687945	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRSK2	9024	broad.mit.edu	37	11	1480315	1480315	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTNL9	153579	broad.mit.edu	37	5	180486891	180486892	+	3'UTR	INS	-	G	G	rs151240170	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BZRAP1	9256	broad.mit.edu	37	17	56386289	56386289	+	Missense_Mutation	SNP	C	A	A	rs145131712	byFrequency;by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf42	160298	broad.mit.edu	37	11	6231697	6231697	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf51	283450	broad.mit.edu	37	12	112622620	112622620	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60903780	60903780	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf2	56651	broad.mit.edu	37	18	1362873	1362873	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30806759	30806759	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf34	374864	broad.mit.edu	37	18	30873253	30873253	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf21	126353	broad.mit.edu	37	19	761679	761679	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf29	58509	broad.mit.edu	37	19	3611929	3611929	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf105	92346	broad.mit.edu	37	1	172425554	172425554	+	Splice_Site	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73814377	73814377	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf16	84226	broad.mit.edu	37	2	27800697	27800697	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf17	84103	broad.mit.edu	37	4	100445681	100445681	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf168	84553	broad.mit.edu	37	6	99739831	99739831	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf10	79783	broad.mit.edu	37	7	40723642	40723643	+	Intron	DNP	TG	CT	CT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39609962	39609962	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8A	731	broad.mit.edu	37	1	57351623	57351623	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf86	389649	broad.mit.edu	37	8	38369847	38369847	+	3'UTR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf96	169436	broad.mit.edu	37	9	136253184	136253184	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf9	11092	broad.mit.edu	37	9	135762988	135762988	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140881222	140881222	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1C	775	broad.mit.edu	37	12	2787126	2787127	+	Intron	DNP	GG	TT	TT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D1	781	broad.mit.edu	37	7	81579841	81579841	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54961830	54961830	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM3	57863	broad.mit.edu	37	1	159170655	159170655	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCB	797	broad.mit.edu	37	11	15098972	15098972	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALCRL	10203	broad.mit.edu	37	2	188245253	188245253	+	Missense_Mutation	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKK2	10645	broad.mit.edu	37	12	121712118	121712118	+	Missense_Mutation	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPRIN2	65981	broad.mit.edu	37	12	30876305	30876305	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2949749	2949749	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD11	84433	broad.mit.edu	37	7	2984041	2984041	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD9	64170	broad.mit.edu	37	9	139266127	139266127	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASKIN1	57524	broad.mit.edu	37	16	2231382	2231382	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP8AP2	9994	broad.mit.edu	37	6	90573971	90573971	+	Missense_Mutation	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASP9	842	broad.mit.edu	37	1	15831069	15831069	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASR	846	broad.mit.edu	37	3	122003967	122003967	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPER2	117155	broad.mit.edu	37	15	43939728	43939728	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBLN2	147381	broad.mit.edu	37	18	70209225	70209225	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC106	29903	broad.mit.edu	37	19	56163807	56163807	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC108	255101	broad.mit.edu	37	2	219870197	219870197	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC109A	90550	broad.mit.edu	37	10	74619187	74619187	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC110	256309	broad.mit.edu	37	4	186379284	186379284	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC147	159686	broad.mit.edu	37	10	106152064	106152064	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC27	148870	broad.mit.edu	37	1	3672290	3672290	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCK	885	broad.mit.edu	37	3	42299711	42299711	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCL26	10344	broad.mit.edu	37	7	75399118	75399118	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072901	17072901	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8	10694	broad.mit.edu	37	21	30445969	30445969	+	5'UTR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD209	30835	broad.mit.edu	37	19	7806658	7806658	+	3'UTR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD83	9308	broad.mit.edu	37	6	14135350	14135350	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD96	10225	broad.mit.edu	37	3	111343304	111343304	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC20	991	broad.mit.edu	37	1	43825017	43825017	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC25A	993	broad.mit.edu	37	3	48207330	48207330	+	Silent	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDC42BPG	55561	broad.mit.edu	37	11	64604410	64604410	+	Silent	SNP	C	T	T	rs147432161		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDCP1	64866	broad.mit.edu	37	3	45127662	45127662	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH10	1008	broad.mit.edu	37	5	24491686	24491686	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883404	21883404	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21883730	21883730	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH18	1016	broad.mit.edu	37	5	19483608	19483608	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH19	28513	broad.mit.edu	37	18	64178894	64178894	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH1	999	broad.mit.edu	37	16	68862125	68862125	+	Missense_Mutation	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH26	60437	broad.mit.edu	37	20	58571841	58571841	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR5	53841	broad.mit.edu	37	11	617536	617536	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDSN	1041	broad.mit.edu	37	6	31083791	31083791	+	3'UTR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CELSR2	1952	broad.mit.edu	37	1	109815340	109815340	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25463593	25463593	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP164	22897	broad.mit.edu	37	11	117282460	117282460	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAC2	494143	broad.mit.edu	37	2	53999058	53999058	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHAF1B	8208	broad.mit.edu	37	21	37766778	37766778	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD4	1108	broad.mit.edu	37	12	6707449	6707449	+	Missense_Mutation	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD5	26038	broad.mit.edu	37	1	6196405	6196405	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHD7	55636	broad.mit.edu	37	8	61654852	61654852	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHRNA9	55584	broad.mit.edu	37	4	40351530	40351530	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN1	1180	broad.mit.edu	37	7	143047543	143047543	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN6	1185	broad.mit.edu	37	1	11867212	11867212	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLCN7	1186	broad.mit.edu	37	16	1501605	1501605	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLIP4	79745	broad.mit.edu	37	2	29390370	29390371	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLMN	79789	broad.mit.edu	37	14	95675665	95675665	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19213771	19213771	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CMPK2	129607	broad.mit.edu	37	2	6991699	6991699	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNGA2	1260	broad.mit.edu	37	X	150912097	150912097	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNIH2	254263	broad.mit.edu	37	11	66049783	66049783	+	Silent	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN4	152330	broad.mit.edu	37	3	3085352	3085352	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN6	27255	broad.mit.edu	37	3	1269653	1269653	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A2	1302	broad.mit.edu	37	6	33156987	33156987	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL12A1	1303	broad.mit.edu	37	6	75799844	75799844	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121353458	121353458	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139824060	139824060	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130095204	130095204	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107816961	107816961	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107911741	107911741	+	Intron	DEL	C	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A5	1287	broad.mit.edu	37	X	107923874	107923874	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107422489	107422489	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL4A6	1288	broad.mit.edu	37	X	107422492	107422492	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10102535	10102535	+	Intron	DEL	T	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL9A3	1299	broad.mit.edu	37	20	61461022	61461023	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CORO1B	57175	broad.mit.edu	37	11	67209219	67209219	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPS1	1373	broad.mit.edu	37	2	211512694	211512694	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPZ	8532	broad.mit.edu	37	4	8621162	8621162	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CR1	1378	broad.mit.edu	37	1	207697445	207697445	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CROT	54677	broad.mit.edu	37	7	87011402	87011402	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAG1	158511	broad.mit.edu	37	X	151908930	151908930	+	Splice_Site	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSAG1	158511	broad.mit.edu	37	X	151909231	151909231	+	3'UTR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34180307	34180307	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113702321	113702321	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114185912	114185912	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	114326822	114326822	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CST7	8530	broad.mit.edu	37	20	24939542	24939542	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTCFL	140690	broad.mit.edu	37	20	56083588	56083588	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77455253	77455253	+	Missense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA2	1496	broad.mit.edu	37	2	80085218	80085218	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND1	1500	broad.mit.edu	37	11	57485696	57485696	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732184	11732184	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16696555	16696555	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16942702	16942702	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUBN	8029	broad.mit.edu	37	10	16949593	16949593	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CUX1	1523	broad.mit.edu	37	7	101870761	101870761	+	Missense_Mutation	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP11B2	1585	broad.mit.edu	37	8	143996109	143996109	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP27B1	1594	broad.mit.edu	37	12	58157625	58157625	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C9	1559	broad.mit.edu	37	10	96748521	96748521	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2E1	1571	broad.mit.edu	37	10	135369243	135369243	+	3'UTR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2W1	54905	broad.mit.edu	37	7	1027006	1027006	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16025514	16025514	+	Intron	SNP	C	A	A	rs73928264	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP4F11	57834	broad.mit.edu	37	19	16025572	16025572	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
D2HGDH	728294	broad.mit.edu	37	2	242690869	242690869	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB2	1601	broad.mit.edu	37	5	39383364	39383364	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT1	51339	broad.mit.edu	37	14	59108331	59108331	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DACT3	147906	broad.mit.edu	37	19	47151528	47151528	+	3'UTR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPP1	27071	broad.mit.edu	37	4	100774501	100774501	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCLK3	85443	broad.mit.edu	37	3	36779860	36779860	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCP1A	55802	broad.mit.edu	37	3	53321515	53321515	+	3'UTR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB110	245913	broad.mit.edu	37	6	49986889	49986889	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS12	79758	broad.mit.edu	37	13	52348059	52348059	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX30	22907	broad.mit.edu	37	3	47883282	47883282	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX30	22907	broad.mit.edu	37	3	47883286	47883286	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIS3L2	129563	broad.mit.edu	37	2	233195547	233195547	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIXDC1	85458	broad.mit.edu	37	11	111864406	111864406	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG5	9231	broad.mit.edu	37	10	79590564	79590564	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1574992	1574992	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118525409	118525409	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13866016	13866016	+	Splice_Site	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13922154	13922154	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAJC6	9829	broad.mit.edu	37	1	65855119	65855119	+	Silent	SNP	G	A	A	rs148673423		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK10	55619	broad.mit.edu	37	2	225750595	225750595	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25136098	25136098	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK8	81704	broad.mit.edu	37	9	446549	446549	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK9	23348	broad.mit.edu	37	13	99537889	99537889	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPY19L2P2	349152	broad.mit.edu	37	7	102916010	102916010	+	5'UTR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	41560998	41560998	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56468298	56468298	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP15	128853	broad.mit.edu	37	20	30451818	30451818	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUT	1854	broad.mit.edu	37	15	48624438	48624438	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUXA	503835	broad.mit.edu	37	19	57670747	57670747	+	Intron	SNP	A	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137807203	137807203	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP3	9666	broad.mit.edu	37	3	108388619	108388619	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFCAB3	146779	broad.mit.edu	37	17	60484419	60484419	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFEMP2	30008	broad.mit.edu	37	11	65635480	65635480	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFEMP2	30008	broad.mit.edu	37	11	65635499	65635499	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2A	83939	broad.mit.edu	37	3	150264620	150264620	+	Intron	SNP	G	A	A	rs73869253		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B3	8891	broad.mit.edu	37	1	45453838	45453838	+	5'Flank	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B3	8891	broad.mit.edu	37	1	45454241	45454241	+	5'Flank	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B3	8891	broad.mit.edu	37	1	45454284	45454284	+	5'Flank	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF2B3	8891	broad.mit.edu	37	1	45454331	45454331	+	5'Flank	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23693511	23693511	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37252839	37252839	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73470540	73470540	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELN	2006	broad.mit.edu	37	7	73470873	73470873	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPP2	5168	broad.mit.edu	37	8	120613725	120613725	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132522728	132522728	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L3	23136	broad.mit.edu	37	18	5489094	5489094	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA7	2045	broad.mit.edu	37	6	94124584	94124584	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142565423	142565423	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB6	2051	broad.mit.edu	37	7	142565468	142565468	+	Missense_Mutation	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ETV6	2120	broad.mit.edu	37	12	12022455	12022455	+	Silent	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	553753	553753	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66115113	66115113	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F12	2161	broad.mit.edu	37	5	176832080	176832080	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171A1	221061	broad.mit.edu	37	10	15255941	15255941	+	Missense_Mutation	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM180A	389558	broad.mit.edu	37	7	135433360	135433360	+	5'UTR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM53A	152877	broad.mit.edu	37	4	1659091	1659091	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190068088	190068088	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A2	642265	broad.mit.edu	37	9	39361081	39361081	+	Missense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75A5	727905	broad.mit.edu	37	9	65508190	65508190	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124792345	124792345	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92564916	92564916	+	Missense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN5	10516	broad.mit.edu	37	14	92353592	92353592	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48729429	48729429	+	Intron	DEL	C	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127613569	127613569	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXL13	222235	broad.mit.edu	37	7	102553704	102553704	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO39	162517	broad.mit.edu	37	17	6690004	6690004	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO41	150726	broad.mit.edu	37	2	73492453	73492453	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157666120	157666121	+	Intron	DNP	GG	TT	TT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL4	83417	broad.mit.edu	37	1	157557276	157557276	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FETUB	26998	broad.mit.edu	37	3	186363940	186363940	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FKTN	2218	broad.mit.edu	37	9	108380278	108380278	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152282032	152282032	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ46321	389763	broad.mit.edu	37	9	84607486	84607486	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128487939	128487939	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT4	2324	broad.mit.edu	37	5	180038192	180038192	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171244388	171244388	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMR1	2332	broad.mit.edu	37	X	147009969	147009969	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FNDC3B	64778	broad.mit.edu	37	3	172050861	172050861	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP2	93986	broad.mit.edu	37	7	114270119	114270119	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52188615	52188615	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52188726	52188726	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4306148	4306148	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSD1	79187	broad.mit.edu	37	19	4311813	4311813	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTSJ2	29960	broad.mit.edu	37	7	2279093	2279093	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161302569	161302569	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA1	2554	broad.mit.edu	37	5	161302738	161302738	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46252673	46252673	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46307791	46307791	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA5	2558	broad.mit.edu	37	15	27159959	27159959	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27222010	27222010	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27778114	27778114	+	3'UTR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAD2	2572	broad.mit.edu	37	10	26589661	26589661	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173852453	173852453	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAP43	2596	broad.mit.edu	37	3	115439809	115439809	+	3'UTR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP1	2633	broad.mit.edu	37	1	89524016	89524016	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89733265	89733265	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCNT2	2651	broad.mit.edu	37	6	10557656	10557656	+	Intron	SNP	G	C	C	rs55736147		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDPD5	81544	broad.mit.edu	37	11	75146592	75146592	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFPT1	2673	broad.mit.edu	37	2	69564888	69564888	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GIMAP8	155038	broad.mit.edu	37	7	150168025	150168025	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1L3	112937	broad.mit.edu	37	11	134180979	134180979	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLB1	2720	broad.mit.edu	37	3	33075833	33075833	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAO1	2775	broad.mit.edu	37	16	56374524	56374524	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLGA2	2801	broad.mit.edu	37	9	131020138	131020138	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOLPH3L	55204	broad.mit.edu	37	1	150635917	150635917	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC6	10082	broad.mit.edu	37	13	94197389	94197389	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46849193	46849193	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR21	2844	broad.mit.edu	37	9	125797349	125797349	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPS1	2873	broad.mit.edu	37	17	80015086	80015086	+	3'UTR	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRAMD4	23151	broad.mit.edu	37	22	47069627	47069627	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB10	2887	broad.mit.edu	37	7	50673020	50673020	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87615902	87615902	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK2	2898	broad.mit.edu	37	6	102266270	102266270	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37356600	37356600	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM2	2912	broad.mit.edu	37	3	51746355	51746355	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88386426	88386426	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSDMB	55876	broad.mit.edu	37	17	38068851	38068851	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTM2	2946	broad.mit.edu	37	1	110224424	110224424	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2C	2984	broad.mit.edu	37	12	14813797	14813797	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYG1	2992	broad.mit.edu	37	3	148714027	148714027	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMH	2999	broad.mit.edu	37	14	25077801	25077801	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAO1	54363	broad.mit.edu	37	20	7920967	7920967	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HECW1	23072	broad.mit.edu	37	7	43484721	43484721	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEG1	57493	broad.mit.edu	37	3	124731608	124731608	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HERC6	55008	broad.mit.edu	37	4	89349840	89349840	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81346567	81346567	+	Missense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIPK1	204851	broad.mit.edu	37	1	114499818	114499818	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK1	51361	broad.mit.edu	37	1	60331647	60331647	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXA3	3200	broad.mit.edu	37	7	27148281	27148282	+	Frame_Shift_Del	DEL	GC	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPR	3250	broad.mit.edu	37	16	72110531	72110531	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118443279	118443279	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA9	3313	broad.mit.edu	37	5	137892117	137892117	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113848528	113848528	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3C	170572	broad.mit.edu	37	3	183776408	183776409	+	Intron	DNP	CC	AG	AG			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYDIN	54768	broad.mit.edu	37	16	71025199	71025199	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HYOU1	10525	broad.mit.edu	37	11	118925049	118925049	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICAM5	7087	broad.mit.edu	37	19	10402220	10402220	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ICK	22858	broad.mit.edu	37	6	52878687	52878687	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD1	3475	broad.mit.edu	37	7	112096172	112096172	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFT172	26160	broad.mit.edu	37	2	27684242	27684242	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGFBP2	3485	broad.mit.edu	37	2	217525440	217525440	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGHMBP2	3508	broad.mit.edu	37	11	68701169	68701169	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IKBKAP	8518	broad.mit.edu	37	9	111659383	111659383	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67787401	67787401	+	Missense_Mutation	SNP	C	G	G	rs140166116		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL1	11141	broad.mit.edu	37	X	29417357	29417357	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104961571	104961571	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RL1	9173	broad.mit.edu	37	2	102955527	102955527	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28RA	163702	broad.mit.edu	37	1	24507392	24507392	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL4R	3566	broad.mit.edu	37	16	27374394	27374394	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBA	3624	broad.mit.edu	37	7	41730176	41730176	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143352393	143352393	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IPO7	10527	broad.mit.edu	37	11	9457803	9457803	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRS2	8660	broad.mit.edu	37	13	110434431	110434431	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX1	79192	broad.mit.edu	37	5	3600222	3600222	+	Missense_Mutation	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3631522	3631522	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPKB	3707	broad.mit.edu	37	1	226923450	226923450	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6066733	6066733	+	Missense_Mutation	SNP	C	A	A	rs148355390		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146991754	146991754	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAM2	58494	broad.mit.edu	37	21	27056325	27056325	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KALRN	8997	broad.mit.edu	37	3	124196146	124196146	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD10	10324	broad.mit.edu	37	2	170359555	170359555	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156254345	156254345	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNC4	3749	broad.mit.edu	37	1	110766518	110766518	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19436748	19436748	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155555206	155555206	+	5'UTR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62046380	62046380	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ2	3785	broad.mit.edu	37	20	62073746	62073746	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNQ5	56479	broad.mit.edu	37	6	73765390	73765390	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36746010	36746010	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36788633	36788633	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCTD1	284252	broad.mit.edu	37	18	24056722	24056722	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDELR2	11014	broad.mit.edu	37	7	6502740	6502740	+	3'UTR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDM5A	5927	broad.mit.edu	37	12	493250	493250	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS1	10657	broad.mit.edu	37	1	32504102	32504102	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS2	202559	broad.mit.edu	37	6	62757846	62757846	+	Silent	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHDRBS3	10656	broad.mit.edu	37	8	136554827	136554827	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0284	283638	broad.mit.edu	37	14	105350346	105350346	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0556	23247	broad.mit.edu	37	16	27732803	27732803	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72292514	72292514	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1274	27143	broad.mit.edu	37	10	72300942	72300942	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1409	57578	broad.mit.edu	37	14	94156556	94156556	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1529	57653	broad.mit.edu	37	9	100053838	100053838	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36874534	36874534	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF15	56992	broad.mit.edu	37	3	44894107	44894107	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2C	11004	broad.mit.edu	37	1	45221724	45221724	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF4A	24137	broad.mit.edu	37	X	69615735	69615735	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55328841	55328841	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36350469	36350469	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL	55243	broad.mit.edu	37	1	158059508	158059508	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHDC5	57542	broad.mit.edu	37	12	27944938	27944938	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL14	57565	broad.mit.edu	37	18	30260371	30260371	+	Splice_Site	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLK13	26085	broad.mit.edu	37	19	51563277	51563277	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KNG1	3827	broad.mit.edu	37	3	186460133	186460133	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRBA1	84626	broad.mit.edu	37	7	149419891	149419891	+	Missense_Mutation	SNP	A	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT34	3885	broad.mit.edu	37	17	39537532	39537532	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT34	3885	broad.mit.edu	37	17	39538048	39538048	+	Splice_Site	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT75	9119	broad.mit.edu	37	12	52826760	52826760	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP1-5	83895	broad.mit.edu	37	17	39183145	39183145	+	Missense_Mutation	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP11-1	337880	broad.mit.edu	37	21	32253335	32253335	+	3'UTR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP5-5	439915	broad.mit.edu	37	11	1651199	1651228	+	In_Frame_Del	DEL	AGGCTGTGGGGGCTGTGGCTCCGGCTGTGC	-	-	rs144216147	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP6-1	337966	broad.mit.edu	37	21	31986171	31986171	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR1	8844	broad.mit.edu	37	17	25932628	25932628	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KY	339855	broad.mit.edu	37	3	134329079	134329079	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
L3MBTL	26013	broad.mit.edu	37	20	42164643	42164643	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB4	22798	broad.mit.edu	37	7	107732801	107732801	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133945149	133945149	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAP3	51056	broad.mit.edu	37	4	17596903	17596903	+	Intron	SNP	C	T	T	rs113557457		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAP3	51056	broad.mit.edu	37	4	17597048	17597048	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LASP1	3927	broad.mit.edu	37	17	37071325	37071325	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCT	3938	broad.mit.edu	37	2	136570530	136570530	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEFTY2	7044	broad.mit.edu	37	1	226127791	226127791	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEPR	3953	broad.mit.edu	37	1	66067113	66067113	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LGI2	55203	broad.mit.edu	37	4	25013978	25013978	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX8	431707	broad.mit.edu	37	1	75596466	75596466	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB4	11006	broad.mit.edu	37	19	55179523	55179523	+	3'UTR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB5	10990	broad.mit.edu	37	19	54756037	54756037	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIN28B	389421	broad.mit.edu	37	6	105526436	105526436	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LNPEP	4012	broad.mit.edu	37	5	96322463	96322463	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC146880	146880	broad.mit.edu	37	17	62748024	62748024	+	RNA	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC168474	168474	broad.mit.edu	37	7	64313386	64313386	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC284232	284232	broad.mit.edu	37	13	19428884	19428884	+	RNA	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC349196	349196	broad.mit.edu	37	8	7155314	7155314	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC441666	441666	broad.mit.edu	37	10	42832490	42832490	+	RNA	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC646214	646214	broad.mit.edu	37	15	21938056	21938056	+	RNA	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC651250	651250	broad.mit.edu	37	17	66123098	66123098	+	RNA	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	22540433	22540433	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23135376	23135376	+	RNA	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23214060	23214060	+	RNA	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC96610	96610	broad.mit.edu	37	22	23243366	23243366	+	RNA	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPAL2	80350	broad.mit.edu	37	6	160899477	160899477	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62445433	62445433	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR3	79948	broad.mit.edu	37	19	814883	814883	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPP	4026	broad.mit.edu	37	3	188426208	188426208	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRCH1	23143	broad.mit.edu	37	13	47266877	47266877	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141272152	141272152	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170002194	170002194	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC37A2	474170	broad.mit.edu	37	17	44626163	44626163	+	Nonsense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70503915	70503915	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSS	4047	broad.mit.edu	37	21	47648438	47648438	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33484716	33484716	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTK	4058	broad.mit.edu	37	15	41796253	41796253	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP2	338645	broad.mit.edu	37	11	25071479	25071479	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYST	1130	broad.mit.edu	37	1	235969806	235969806	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MACF1	23499	broad.mit.edu	37	1	39853098	39853098	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MADD	8567	broad.mit.edu	37	11	47296127	47296127	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEA11	4110	broad.mit.edu	37	X	148770567	148770567	+	5'UTR	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGI1	9223	broad.mit.edu	37	3	65349172	65349172	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1C1	57134	broad.mit.edu	37	1	26110248	26110248	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP1B	4131	broad.mit.edu	37	5	71491552	71491552	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP3K3	4215	broad.mit.edu	37	17	61744398	61744398	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK15	225689	broad.mit.edu	37	8	144804232	144804232	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH6	10299	broad.mit.edu	37	5	10407152	10407152	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN3	4148	broad.mit.edu	37	2	20203042	20203042	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBD2	8932	broad.mit.edu	37	18	51731344	51731344	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MBTPS2	51360	broad.mit.edu	37	X	21896315	21896315	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MC3R	4159	broad.mit.edu	37	20	54823834	54823834	+	5'UTR	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ME2	4200	broad.mit.edu	37	18	48439200	48439200	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEGF10	84466	broad.mit.edu	37	5	126753237	126753237	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFI2	4241	broad.mit.edu	37	3	196733536	196733536	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74865078	74865078	+	5'UTR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGA	23269	broad.mit.edu	37	15	41991273	41991273	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGLL	11343	broad.mit.edu	37	3	127439854	127439854	+	Intron	DEL	G	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR147	406939	broad.mit.edu	37	9	123007264	123007264	+	RNA	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR655	724025	broad.mit.edu	37	14	101515867	101515867	+	5'Flank	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKX	283078	broad.mit.edu	37	10	28023610	28023610	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLH1	4292	broad.mit.edu	37	3	37089041	37089041	+	Missense_Mutation	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMP27	64066	broad.mit.edu	37	11	102573542	102573542	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMRN1	22915	broad.mit.edu	37	4	90830583	90830583	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108682509	108682509	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRPL39	54148	broad.mit.edu	37	21	26966223	26966223	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MS4A12	54860	broad.mit.edu	37	11	60268517	60268517	+	Splice_Site	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTRR	4552	broad.mit.edu	37	5	7886681	7886681	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9090220	9090220	+	Missense_Mutation	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MXRA5	25878	broad.mit.edu	37	X	3248479	3248479	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBL2	4605	broad.mit.edu	37	20	42311239	42311239	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH15	22989	broad.mit.edu	37	3	108205358	108205358	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10428422	10428422	+	Intron	SNP	A	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH2	4620	broad.mit.edu	37	17	10450921	10450921	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10310251	10310251	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYL6	4637	broad.mit.edu	37	12	56552228	56552228	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123458744	123458744	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109562458	109562458	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO16	23026	broad.mit.edu	37	13	109610051	109610051	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128394877	128394878	+	Intron	INS	-	T	T	rs145800733	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM3	127294	broad.mit.edu	37	1	24422047	24422047	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89896592	89896592	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89914911	89914911	+	Intron	SNP	G	T	T	rs75423699		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78562462	78562462	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEAL2	23218	broad.mit.edu	37	3	47044777	47044777	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	36241794	36241794	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAN	1463	broad.mit.edu	37	19	19334761	19334761	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDE1	54820	broad.mit.edu	37	16	15771799	15771799	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFAF2	91942	broad.mit.edu	37	5	60241050	60241050	+	5'UTR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170315722	170315722	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	21251018	21251018	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NET1	10276	broad.mit.edu	37	10	5495387	5495387	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEU4	129807	broad.mit.edu	37	2	242757466	242757466	+	Missense_Mutation	SNP	C	A	A	rs139467778		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29588707	29588707	+	Intron	DEL	C	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204924236	204924236	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFXL1	152518	broad.mit.edu	37	4	47887580	47887581	+	Frame_Shift_Ins	INS	-	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGDN	25983	broad.mit.edu	37	14	23944783	23944783	+	Missense_Mutation	SNP	G	A	A	rs148302816		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236208675	236208675	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR1	10316	broad.mit.edu	37	2	232389976	232389976	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMUR2	56923	broad.mit.edu	37	5	151777633	151777633	+	Missense_Mutation	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOL8	55035	broad.mit.edu	37	9	95076672	95076672	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOM1	64434	broad.mit.edu	37	7	156759124	156759124	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOTCH4	4855	broad.mit.edu	37	6	32180890	32180890	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOX1	27035	broad.mit.edu	37	X	100117173	100117173	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPAS4	266743	broad.mit.edu	37	11	66193356	66193356	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPEPPS	9520	broad.mit.edu	37	17	45697057	45697057	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHP1	4867	broad.mit.edu	37	2	110927765	110927765	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS2	7827	broad.mit.edu	37	1	179533764	179533764	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPY1R	4886	broad.mit.edu	37	4	164247106	164247106	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NR2E3	10002	broad.mit.edu	37	15	72109777	72109777	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115377392	115377392	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107872665	107872665	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN4	387338	broad.mit.edu	37	1	46826611	46826611	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88472301	88472301	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK3	4916	broad.mit.edu	37	15	88474497	88474497	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUDT14	256281	broad.mit.edu	37	14	105643016	105643016	+	Missense_Mutation	SNP	C	A	A	rs141847132		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP85	79902	broad.mit.edu	37	17	73231417	73231417	+	Intron	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXPH4	11247	broad.mit.edu	37	12	57619575	57619575	+	3'UTR	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OBSCN	84033	broad.mit.edu	37	1	228566574	228566574	+	3'UTR	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ2	57451	broad.mit.edu	37	5	167654946	167654946	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OGDHL	55753	broad.mit.edu	37	10	50944252	50944252	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM3	118427	broad.mit.edu	37	1	102312370	102312370	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53616044	53616044	+	Splice_Site	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPALIN	93377	broad.mit.edu	37	10	98105779	98105779	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10G3	26533	broad.mit.edu	37	14	22038045	22038045	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450321	158450321	+	Silent	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13A1	79290	broad.mit.edu	37	10	45798999	45798999	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C5	138799	broad.mit.edu	37	9	107361215	107361215	+	Silent	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1M1	125963	broad.mit.edu	37	19	9204055	9204055	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2B6	26212	broad.mit.edu	37	6	27925077	27925077	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G3	81469	broad.mit.edu	37	1	247769413	247769413	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2L1P	26247	broad.mit.edu	37	1	248153979	248153979	+	Missense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M5	127059	broad.mit.edu	37	1	248308469	248308469	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T3	343173	broad.mit.edu	37	1	248637272	248637272	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T6	254879	broad.mit.edu	37	1	248550931	248550931	+	Missense_Mutation	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C15	81309	broad.mit.edu	37	11	55322326	55322326	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C46	119749	broad.mit.edu	37	11	51515622	51515622	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C6	219432	broad.mit.edu	37	11	55433434	55433434	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K15	81127	broad.mit.edu	37	14	20443737	20443738	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K5	79317	broad.mit.edu	37	14	20388746	20388746	+	5'Flank	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4N2	390429	broad.mit.edu	37	14	20296313	20296313	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S1	256148	broad.mit.edu	37	11	48328531	48328531	+	Missense_Mutation	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51A4	401666	broad.mit.edu	37	11	4967800	4967800	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52I2	143502	broad.mit.edu	37	11	4608963	4608963	+	Silent	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5H2	79310	broad.mit.edu	37	3	98001900	98001900	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5I1	10798	broad.mit.edu	37	11	55703699	55703699	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579618	55579618	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H2	390151	broad.mit.edu	37	11	55872708	55872708	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8H3	390152	broad.mit.edu	37	11	55890038	55890038	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8J3	81168	broad.mit.edu	37	11	55904959	55904960	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9G9	504191	broad.mit.edu	37	11	56468369	56468369	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21898823	21898823	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL3	26031	broad.mit.edu	37	7	24846359	24846359	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX1	5013	broad.mit.edu	37	2	63281147	63281147	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX2	5015	broad.mit.edu	37	14	57268855	57268855	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXCT1	5019	broad.mit.edu	37	5	41794716	41794716	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103234148	103234148	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPOLG	64895	broad.mit.edu	37	2	61014693	61014693	+	Missense_Mutation	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176762727	176762727	+	Silent	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	118989847	118989847	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAQR6	79957	broad.mit.edu	37	1	156214604	156214604	+	Silent	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARP11	57097	broad.mit.edu	37	12	3949445	3949445	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PATE1	160065	broad.mit.edu	37	11	125616280	125616280	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAX6	5080	broad.mit.edu	37	11	31815103	31815103	+	Splice_Site	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134084251	134084251	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB6	56130	broad.mit.edu	37	5	140531513	140531513	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB7	56129	broad.mit.edu	37	5	140552772	140552772	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140559034	140559034	+	Missense_Mutation	SNP	C	A	A	rs113701735		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL3	399909	broad.mit.edu	37	11	65386199	65386199	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71518646	71518646	+	Silent	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCSK2	5126	broad.mit.edu	37	20	17446099	17446099	+	Missense_Mutation	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDPR	55066	broad.mit.edu	37	16	70154645	70154645	+	Intron	DEL	C	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5B	23047	broad.mit.edu	37	13	33306381	33306381	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PELP1	27043	broad.mit.edu	37	17	4576080	4576080	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEX12	5193	broad.mit.edu	37	17	33904007	33904007	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAM5	192111	broad.mit.edu	37	12	133291386	133291386	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGAM5	192111	broad.mit.edu	37	12	133291502	133291502	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGBD3	267004	broad.mit.edu	37	10	50723384	50723384	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGM5	5239	broad.mit.edu	37	9	71098793	71098793	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF8	23133	broad.mit.edu	37	X	54020195	54020195	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KAP2	375133	broad.mit.edu	37	22	21829601	21829601	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3CD	5293	broad.mit.edu	37	1	9780180	9780180	+	Silent	SNP	C	T	T	rs149764166		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3R4	30849	broad.mit.edu	37	3	130453046	130453046	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKD2	5311	broad.mit.edu	37	4	88996731	88996731	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110477365	110477365	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLAU	5328	broad.mit.edu	37	10	75672093	75672093	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLBD2	196463	broad.mit.edu	37	12	113823138	113823138	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCH2	9651	broad.mit.edu	37	1	2419131	2419131	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6531112	6531112	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLSCR4	57088	broad.mit.edu	37	3	145917794	145917794	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20335971	20335971	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131831322	131831322	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PM20D2	135293	broad.mit.edu	37	6	89862832	89862832	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMS2L11	441263	broad.mit.edu	37	7	76607868	76607868	+	5'Flank	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNLIPRP3	119548	broad.mit.edu	37	10	118198996	118198996	+	Intron	SNP	C	A	A	rs80163012	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA7	375775	broad.mit.edu	37	9	140400120	140400120	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLD3	10714	broad.mit.edu	37	11	74305272	74305272	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121200641	121200641	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLQ	10721	broad.mit.edu	37	3	121207931	121207931	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POM121L12	285877	broad.mit.edu	37	7	53103542	53103542	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEE	445582	broad.mit.edu	37	2	132010529	132010529	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19553698	19553698	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19573209	19573209	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEG	404785	broad.mit.edu	37	14	19574138	19574138	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU2F1	5451	broad.mit.edu	37	1	167334832	167334832	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA4	8497	broad.mit.edu	37	1	203026012	203026012	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1B	5495	broad.mit.edu	37	2	44393939	44393939	+	5'Flank	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R16B	26051	broad.mit.edu	37	20	37529399	37529399	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB3	5544	broad.mit.edu	37	12	11420885	11420885	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23522857	23522857	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47274826	47274826	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24166083	24166083	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30095757	30095757	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKD1	5587	broad.mit.edu	37	14	30396585	30396585	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKDC	5591	broad.mit.edu	37	8	48839832	48839832	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROKR1	10887	broad.mit.edu	37	2	68873233	68873233	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROX1	5629	broad.mit.edu	37	1	214171068	214171068	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRPF40B	25766	broad.mit.edu	37	12	50025044	50025044	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS16	10279	broad.mit.edu	37	6	27216634	27216634	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS42	339906	broad.mit.edu	37	3	46874472	46874472	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43680272	43680272	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTDSS1	9791	broad.mit.edu	37	8	97312032	97312032	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRF	5792	broad.mit.edu	37	1	44071154	44071154	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRK	5796	broad.mit.edu	37	6	128304170	128304170	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121679719	121679719	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121681017	121681017	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7L	83448	broad.mit.edu	37	12	44148624	44148624	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52322075	52322075	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYROXD1	79912	broad.mit.edu	37	12	21614098	21614098	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220383684	220383684	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RABGGTB	5876	broad.mit.edu	37	1	76253334	76253335	+	Intron	INS	-	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD54B	25788	broad.mit.edu	37	8	95390564	95390564	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAET1G	353091	broad.mit.edu	37	6	150240366	150240366	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21944462	21944462	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBBP6	5930	broad.mit.edu	37	16	24574724	24574724	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBM19	9904	broad.mit.edu	37	12	114385258	114385258	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RBP3	5949	broad.mit.edu	37	10	48390446	48390446	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH10	157506	broad.mit.edu	37	8	74231418	74231418	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDH8	50700	broad.mit.edu	37	19	10127965	10127965	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RDX	5962	broad.mit.edu	37	11	110124867	110124867	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG1B	5968	broad.mit.edu	37	2	79312775	79312775	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3A	5068	broad.mit.edu	37	2	79385454	79385454	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253889	79253889	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REG3G	130120	broad.mit.edu	37	2	79253991	79253991	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RERGL	79785	broad.mit.edu	37	12	18238706	18238706	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFTN2	130132	broad.mit.edu	37	2	198496054	198496054	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108488020	108488020	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGPD4	285190	broad.mit.edu	37	2	108492794	108492794	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGS20	8601	broad.mit.edu	37	8	54792025	54792025	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHBG	57127	broad.mit.edu	37	1	156347342	156347342	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87243322	87243322	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5B	64777	broad.mit.edu	37	5	177571094	177571094	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE7	84659	broad.mit.edu	37	14	21511199	21511199	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF112	7732	broad.mit.edu	37	17	19316938	19316938	+	Missense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF113A	7737	broad.mit.edu	37	X	119005672	119005673	+	5'UTR	INS	-	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF113B	140432	broad.mit.edu	37	13	98829362	98829362	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF114	55905	broad.mit.edu	37	20	48561884	48561884	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF25	64320	broad.mit.edu	37	2	219529494	219529494	+	Nonsense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94486054	94486072	+	Frame_Shift_Del	DEL	TGCTCTGGGCCCCATCTTC	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1	6101	broad.mit.edu	37	8	55534941	55534941	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL31	6160	broad.mit.edu	37	2	101622875	101622875	+	3'UTR	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RREB1	6239	broad.mit.edu	37	6	7211137	7211137	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRP1	8568	broad.mit.edu	37	21	45211119	45211119	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSF1	51773	broad.mit.edu	37	11	77402092	77402092	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH10B2	728194	broad.mit.edu	37	7	6000522	6000522	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RUNDC2A	84127	broad.mit.edu	37	16	12096810	12096810	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXFP3	51289	broad.mit.edu	37	5	33937116	33937116	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237777328	237777328	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237802302	237802302	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SACS	26278	broad.mit.edu	37	13	23910525	23910525	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SALL3	27164	broad.mit.edu	37	18	76753481	76753481	+	Missense_Mutation	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30L	79685	broad.mit.edu	37	5	153826469	153826469	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG2	7857	broad.mit.edu	37	2	224462309	224462309	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN11A	11280	broad.mit.edu	37	3	38950598	38950598	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN7A	6332	broad.mit.edu	37	2	167262631	167262631	+	Missense_Mutation	SNP	G	C	C	rs149649737	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNN1A	6337	broad.mit.edu	37	12	6457990	6457990	+	Intron	SNP	G	A	A	rs72657551	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCUBE1	80274	broad.mit.edu	37	22	43603968	43603968	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCBP	6386	broad.mit.edu	37	8	59490720	59490720	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDCCAG3	10807	broad.mit.edu	37	9	139301807	139301807	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK2	54549	broad.mit.edu	37	17	71427796	71427796	+	Nonsense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDR39U1	56948	broad.mit.edu	37	14	24912021	24912021	+	5'Flank	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC14L1	6397	broad.mit.edu	37	17	75196674	75196674	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31A	22872	broad.mit.edu	37	4	83763285	83763285	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83590774	83590774	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3A	10371	broad.mit.edu	37	7	83636694	83636694	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3C	10512	broad.mit.edu	37	7	80427497	80427497	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9044623	9044623	+	Silent	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9190586	9190586	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115782751	115782751	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6A	57556	broad.mit.edu	37	5	115782852	115782852	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEPT14	346288	broad.mit.edu	37	7	55863778	55863778	+	Missense_Mutation	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA10	51156	broad.mit.edu	37	14	94752420	94752420	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA10	51156	broad.mit.edu	37	14	94754747	94754747	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP5	6425	broad.mit.edu	37	10	99531423	99531423	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	156186318	156186318	+	Missense_Mutation	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCG	6445	broad.mit.edu	37	13	23820834	23820834	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGOL1	151648	broad.mit.edu	37	3	20225228	20225228	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148418026	148418026	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SHPRH	257218	broad.mit.edu	37	6	146261794	146261794	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIN3A	25942	broad.mit.edu	37	15	75705247	75705247	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A7	84068	broad.mit.edu	37	4	147214982	147214982	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC10A7	84068	broad.mit.edu	37	4	147438078	147438078	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44676138	44676138	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A7	10723	broad.mit.edu	37	5	1075353	1075353	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A9	56996	broad.mit.edu	37	7	100459433	100459433	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC16A9	220963	broad.mit.edu	37	10	61424037	61424037	+	Silent	SNP	C	A	A	rs2306162		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25777090	25777090	+	Missense_Mutation	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22360243	22360243	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC24A4	123041	broad.mit.edu	37	14	92913840	92913840	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92375685	92375685	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A3	6515	broad.mit.edu	37	12	8075340	8075340	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC37A3	84255	broad.mit.edu	37	7	140051040	140051040	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A11	151258	broad.mit.edu	37	2	165809379	165809379	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A4	55089	broad.mit.edu	37	12	47163035	47163035	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A4	8671	broad.mit.edu	37	4	72332251	72332251	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A19	340024	broad.mit.edu	37	5	1209045	1209045	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55731728	55731728	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A3	6531	broad.mit.edu	37	5	1443098	1443098	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC9A9	285195	broad.mit.edu	37	3	143297460	143297460	+	Silent	SNP	T	A	A	rs151096476	byFrequency;by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21422397	21422397	+	3'UTR	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO6A1	133482	broad.mit.edu	37	5	101813625	101813626	+	Intron	DNP	CA	AG	AG	rs115504797	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121706015	121706015	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX7	51375	broad.mit.edu	37	1	99156718	99156718	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNX8	29886	broad.mit.edu	37	7	2297589	2297589	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SON	6651	broad.mit.edu	37	21	34932301	34932301	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108589327	108589327	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS3	22986	broad.mit.edu	37	10	106899352	106899352	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOS2	6655	broad.mit.edu	37	14	50616996	50616996	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23999001	23999001	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SP140L	93349	broad.mit.edu	37	2	231267474	231267474	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPA17	53340	broad.mit.edu	37	11	124551353	124551353	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220333758	220333758	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147444943	147444943	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPINK5	11005	broad.mit.edu	37	5	147450049	147450049	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	168004474	168004474	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRED2	200734	broad.mit.edu	37	2	65561824	65561824	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158596907	158596907	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158606394	158606394	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158627313	158627313	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRCAP	10847	broad.mit.edu	37	16	30732519	30732519	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM2	23524	broad.mit.edu	37	16	2813861	2813861	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST14	6768	broad.mit.edu	37	11	130060249	130060249	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68449284	68449284	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP1	26228	broad.mit.edu	37	4	68472001	68472001	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAP2	55620	broad.mit.edu	37	19	4325383	4325383	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STON2	85439	broad.mit.edu	37	14	81862182	81862182	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX6	10228	broad.mit.edu	37	1	180962673	180962673	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYCP2L	221711	broad.mit.edu	37	6	10906288	10906288	+	Splice_Site	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGR3	9143	broad.mit.edu	37	16	2042716	2042716	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TACC3	10460	broad.mit.edu	37	4	1730169	1730169	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1	6872	broad.mit.edu	37	X	70608074	70608074	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32797239	32797239	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAP2	6891	broad.mit.edu	37	6	32797559	32797559	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARBP1	6894	broad.mit.edu	37	1	234529116	234529116	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS2	80222	broad.mit.edu	37	1	150461688	150461689	+	Intron	DNP	AG	CT	CT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TARS	6897	broad.mit.edu	37	5	33455797	33455797	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D15	64786	broad.mit.edu	37	12	72243918	72243918	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCEB3B	51224	broad.mit.edu	37	18	44561102	44561102	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61041321	61041321	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD3	81550	broad.mit.edu	37	13	61084791	61084791	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECRL	253017	broad.mit.edu	37	4	65155422	65155422	+	Intron	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TESK2	10420	broad.mit.edu	37	1	45811759	45811759	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGDS	23483	broad.mit.edu	37	13	95230923	95230923	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2297707	2297707	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC3	84321	broad.mit.edu	37	5	175394224	175394234	+	Frame_Shift_Del	DEL	AGCTGGTCCAC	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOC6	79228	broad.mit.edu	37	16	3076108	3076108	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11415466	11415466	+	Silent	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11676463	11676463	+	Missense_Mutation	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIAM1	7074	broad.mit.edu	37	21	32526612	32526612	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMM50	92609	broad.mit.edu	37	19	39973443	39973443	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164393186	164393186	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL1	7092	broad.mit.edu	37	4	167021921	167021921	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120475528	120475528	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR8	51311	broad.mit.edu	37	X	12939284	12939284	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCC3	57458	broad.mit.edu	37	12	94975550	94975550	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMCO1	54499	broad.mit.edu	37	1	165737916	165737916	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM14A	28978	broad.mit.edu	37	6	52546783	52546783	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM45A	55076	broad.mit.edu	37	3	100277485	100277485	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10D	8793	broad.mit.edu	37	8	23003529	23003529	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	75009675	75009675	+	3'UTR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175372452	175372452	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX	9760	broad.mit.edu	37	8	59851829	59851829	+	Intron	DEL	C	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7577568	7577568	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10914484	10914484	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRA2B	6434	broad.mit.edu	37	3	185636261	185636261	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAFD1	10906	broad.mit.edu	37	12	112572953	112572953	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRAPPC9	83696	broad.mit.edu	37	8	141034235	141034235	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TREML1	340205	broad.mit.edu	37	6	41121752	41121752	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM10	10107	broad.mit.edu	37	6	30121975	30121975	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPV5	56302	broad.mit.edu	37	7	142626750	142626750	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51872733	51872733	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ3	57616	broad.mit.edu	37	19	31769592	31769592	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL4	9654	broad.mit.edu	37	2	219614060	219614060	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179545114	179545114	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTYH2	94015	broad.mit.edu	37	17	72209803	72209803	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TWISTNB	221830	broad.mit.edu	37	7	19738102	19738102	+	Missense_Mutation	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBA6	55236	broad.mit.edu	37	4	68484729	68484729	+	Missense_Mutation	SNP	G	T	T	rs140327502		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D3	7323	broad.mit.edu	37	4	103720199	103720200	+	Intron	DEL	AT	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D3	7323	broad.mit.edu	37	4	103723778	103723778	+	Missense_Mutation	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE3C	9690	broad.mit.edu	37	7	157009540	157009540	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBTF	7343	broad.mit.edu	37	17	42287476	42287476	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN7	26043	broad.mit.edu	37	3	196083732	196083732	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96484918	96484918	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGGT2	55757	broad.mit.edu	37	13	96485250	96485250	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B11	10720	broad.mit.edu	37	4	70080278	70080278	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70146102	70146102	+	5'Flank	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20346766	20346766	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UMOD	7369	broad.mit.edu	37	16	20352544	20352544	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC119B	84747	broad.mit.edu	37	12	121154855	121154855	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13B	10497	broad.mit.edu	37	9	35390130	35390130	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC45B	146862	broad.mit.edu	37	17	33510550	33510550	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5D	137970	broad.mit.edu	37	8	35648138	35648138	+	3'UTR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126220026	126220026	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216061725	216061725	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USO1	8615	broad.mit.edu	37	4	76721751	76721751	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP15	9958	broad.mit.edu	37	12	62783402	62783402	+	Silent	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP21	27005	broad.mit.edu	37	1	161130616	161130616	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144750710	144750710	+	Intron	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTS2	10911	broad.mit.edu	37	1	7912986	7912986	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	32520821	32520822	+	IGR	DNP	CC	AA	AA			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38897513	38897513	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	38977995	38977995	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	45731388	45731388	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92813638	92813638	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	122831788	122831788	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39183131	39183131	+	IGR	SNP	C	T	T	rs11035106	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4496103	4496103	+	IGR	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	4511131	4511131	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56280252	56280252	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58060200	58060200	+	IGR	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94646297	94646297	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98436495	98436495	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	127829011	127829011	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	16553043	16553043	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	63712321	63712321	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19271155	19271156	+	IGR	DNP	CC	AA	AA			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19600115	19600115	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	52482980	52482980	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55015391	55015391	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	59103612	59103612	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68297677	68297677	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79484439	79484439	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90824216	90824216	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	98568485	98568485	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45331305	45331305	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45334609	45334609	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45357791	45357791	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20087527	20087527	+	IGR	SNP	C	T	T	rs10444966		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	31174627	31174627	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	34782079	34782079	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	10935155	10935155	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	16026175	16026175	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33605483	33605483	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33661810	33661810	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33768081	33768082	+	IGR	DNP	GG	TT	TT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34582366	34582366	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	52689745	52689745	+	IGR	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25989015	25989015	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	28896744	28896744	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	43685908	43685908	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	64193954	64193954	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11625536	11625536	+	IGR	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14631399	14631399	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57637810	57637810	+	IGR	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	23688866	23688866	+	IGR	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	110194771	110194771	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	154350924	154350924	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	191115824	191115824	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209406123	209406123	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	220488582	220488582	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	242223518	242223518	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	248604653	248604653	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	70996500	70996500	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79215649	79215649	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	31278156	31278156	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7812905	7812905	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14758651	14758651	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14800158	14800158	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20617143	20617143	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	24762813	24762813	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	32665508	32665508	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104111256	104111256	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132182236	132182236	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132218649	132218649	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132383688	132383688	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154227414	154227414	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	168570481	168570481	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	175175134	175175134	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	188691230	188691230	+	IGR	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	34065518	34065518	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800675	91800675	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91933255	91933255	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91955495	91955495	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	145402428	145402428	+	IGR	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	155831689	155831690	+	IGR	INS	-	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	183606157	183606157	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	36809563	36809563	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	72933422	72933422	+	IGR	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75397678	75397678	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	75435943	75435943	+	IGR	SNP	A	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87101493	87101493	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	98031557	98031557	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117520004	117520004	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117520695	117520696	+	IGR	DNP	CC	AA	AA			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	164187680	164187680	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	165864811	165864811	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190396347	190396347	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	65298902	65298902	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69650364	69650364	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	93104756	93104756	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	110319304	110319304	+	IGR	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	13638455	13638456	+	IGR	DNP	GG	TT	TT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23304650	23304650	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23689134	23689134	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29882851	29882851	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	53155978	53155978	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	46173739	46173739	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66547182	66547183	+	IGR	DEL	CA	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	82053409	82053409	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10516301	10516301	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	20867441	20867441	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56699597	56699597	+	IGR	SNP	C	G	G	rs35283564		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56718347	56718348	+	IGR	INS	-	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56874122	56874122	+	IGR	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63230448	63230448	+	IGR	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	79726112	79726112	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107228530	107228530	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47512223	47512223	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	62114954	62114954	+	IGR	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30832128	30832128	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44153921	44153921	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	44153923	44153923	+	IGR	SNP	C	A	A	rs141922952	by1000genomes	TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	45376166	45376166	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66714062	66714062	+	IGR	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	84674152	84674152	+	IGR	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	115807439	115807439	+	IGR	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	23094473	23094473	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26178714	26178714	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	37402659	37402659	+	IGR	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65295341	65295341	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89294854	89294854	+	IGR	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89295595	89295595	+	IGR	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13463881	13463881	+	IGR	SNP	C	T	T	rs77376919		TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177650639	177650639	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2651343	2651343	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12331089	12331089	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS4B	9525	broad.mit.edu	37	18	61077470	61077470	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS8	23355	broad.mit.edu	37	3	184648312	184648312	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WASF1	8936	broad.mit.edu	37	6	110424697	110424697	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11	51729	broad.mit.edu	37	12	14949689	14949689	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR47	22911	broad.mit.edu	37	1	109533963	109533963	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDTC1	23038	broad.mit.edu	37	1	27609887	27609887	+	Missense_Mutation	SNP	A	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WIF1	11197	broad.mit.edu	37	12	65449066	65449066	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK1	65125	broad.mit.edu	37	12	992603	992603	+	Missense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WNK2	65268	broad.mit.edu	37	9	96061494	96061494	+	Silent	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIRP2	129446	broad.mit.edu	37	2	168106534	168106534	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73066916	73066916	+	RNA	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30584765	30584765	+	Silent	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
YIPF2	78992	broad.mit.edu	37	19	11036359	11036359	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZAN	7455	broad.mit.edu	37	7	100334234	100334234	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698292	111698292	+	Silent	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC17	23390	broad.mit.edu	37	12	77239690	77239690	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC1	29800	broad.mit.edu	37	16	67433380	67433380	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZDHHC7	55625	broad.mit.edu	37	16	85010788	85010788	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFAND2A	90637	broad.mit.edu	37	7	1197219	1197219	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFYVE28	57732	broad.mit.edu	37	4	2307056	2307056	+	Nonsense_Mutation	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIK1	284307	broad.mit.edu	37	19	58101828	58101828	+	Frame_Shift_Del	DEL	G	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIM3	114026	broad.mit.edu	37	19	57653932	57653932	+	Intron	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMIZ2	83637	broad.mit.edu	37	7	44804118	44804118	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF221	7638	broad.mit.edu	37	19	44471324	44471325	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF226	7769	broad.mit.edu	37	19	44681648	44681648	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF234	10780	broad.mit.edu	37	19	44661190	44661190	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF292	23036	broad.mit.edu	37	6	87964599	87964599	+	Missense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF318	24149	broad.mit.edu	37	6	43304967	43304967	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF436	80818	broad.mit.edu	37	1	23688970	23688970	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF451	26036	broad.mit.edu	37	6	57011930	57011930	+	Missense_Mutation	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF598	90850	broad.mit.edu	37	16	2048280	2048280	+	Missense_Mutation	SNP	C	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF615	284370	broad.mit.edu	37	19	52497585	52497585	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF622	90441	broad.mit.edu	37	5	16465718	16465718	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF75D	7626	broad.mit.edu	37	X	134426361	134426361	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF804A	91752	broad.mit.edu	37	2	185803401	185803401	+	Missense_Mutation	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF823	55552	broad.mit.edu	37	19	11833307	11833307	+	Nonsense_Mutation	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNFX1	57169	broad.mit.edu	37	20	47869173	47869173	+	Intron	SNP	A	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZRANB3	84083	broad.mit.edu	37	2	136110948	136110948	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58118196	58118196	+	Missense_Mutation	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30925143	30925143	+	RNA	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31115714	31115714	+	Silent	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22554894	22554894	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22592001	22592001	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22631687	22631687	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22473173	22473173	+	RNA	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	76075019	76075019	+	Intron	SNP	T	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	16459445	16459445	+	5'Flank	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32077142	32077142	+	5'Flank	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	19349455	19349455	+	RNA	SNP	G	C	C			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22785544	22785544	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143210157	143210157	+	Intron	SNP	T	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143210294	143210294	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	58889449	58889449	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	133070612	133070612	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89309426	89309426	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89533581	89533581	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89586800	89586800	+	Intron	SNP	G	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	95613691	95613691	+	5'Flank	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	113950934	113950934	+	Intron	SNP	C	A	A			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142247107	142247107	+	Intron	SNP	T	G	G			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142457270	142457270	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142471345	142471345	+	Intron	DEL	T	-	-			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	148979215	148979215	+	Intron	SNP	C	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65291627	65291627	+	Intron	SNP	G	T	T			TCGA-05-5428-01A-01D-1625-08	TCGA-05-5428-10A-01D-1625-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
