Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	6390626	6390626	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	6398909	6398910	+	Intron	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2BP1	54715	broad.mit.edu	37	16	7286875	7286875	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AADAT	51166	broad.mit.edu	37	4	170991790	170991790	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48467326	48467326	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48568389	48568389	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48659517	48659517	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA6	23460	broad.mit.edu	37	17	67102404	67102404	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA8	10351	broad.mit.edu	37	17	66921153	66921153	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17448578	17448578	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43621940	43621940	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG2	9429	broad.mit.edu	37	4	89052493	89052493	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACAP1	9744	broad.mit.edu	37	17	7240171	7240171	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31517872	31517872	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	31716288	31716288	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32074562	32074562	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACCN1	40	broad.mit.edu	37	17	32410739	32410739	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM1	116285	broad.mit.edu	37	16	20635229	20635229	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSM5	54988	broad.mit.edu	37	16	20429348	20429348	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM12	8038	broad.mit.edu	37	10	127857583	127857583	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM19	8728	broad.mit.edu	37	5	156918832	156918832	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106209218	106209218	+	RNA	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106452653	106452653	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106494256	106494256	+	RNA	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106622022	106622022	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	107057393	107057393	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS12	81792	broad.mit.edu	37	5	33825522	33825522	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADARB2	105	broad.mit.edu	37	10	1650772	1650772	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY3	109	broad.mit.edu	37	2	25059851	25059851	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY5	111	broad.mit.edu	37	3	123121965	123121965	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY8	114	broad.mit.edu	37	8	131803663	131803663	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31120331	31120331	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADD2	119	broad.mit.edu	37	2	70848261	70848261	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147693320	147693320	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AFF2	2334	broad.mit.edu	37	X	147967368	147967368	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGL	178	broad.mit.edu	37	1	100381088	100381088	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIDA	64853	broad.mit.edu	37	1	222849665	222849665	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM1	202	broad.mit.edu	37	6	106967309	106967309	+	Silent	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AIM2	9447	broad.mit.edu	37	1	159035705	159035705	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP13	11214	broad.mit.edu	37	15	86129055	86129055	+	Splice_Site	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L	200810	broad.mit.edu	37	3	125651539	125651539	+	Silent	SNP	A	C	C	rs147593769	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALK	238	broad.mit.edu	37	2	29917779	29917779	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALLC	55821	broad.mit.edu	37	2	3743369	3743369	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56287185	56287185	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPL	249	broad.mit.edu	37	1	21902974	21902974	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AMELX	265	broad.mit.edu	37	X	11316225	11316225	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANGPT1	284	broad.mit.edu	37	8	108315503	108315503	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK1	286	broad.mit.edu	37	8	41547754	41547754	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114147538	114147538	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK2	287	broad.mit.edu	37	4	114244938	114244938	+	Intron	SNP	G	T	T	rs145471236	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61836088	61836088	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKFN1	162282	broad.mit.edu	37	17	54434779	54434779	+	Intron	SNP	G	T	T	rs146322257	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD1	27063	broad.mit.edu	37	10	92677534	92677534	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD44	91526	broad.mit.edu	37	2	197858365	197858365	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANXA5	308	broad.mit.edu	37	4	122604575	122604575	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APLP2	334	broad.mit.edu	37	11	129990726	129990726	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOB	338	broad.mit.edu	37	2	21236288	21236288	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP17	55114	broad.mit.edu	37	16	24953364	24953364	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP26	23092	broad.mit.edu	37	5	142170498	142170498	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP30	257106	broad.mit.edu	37	1	161018084	161018085	+	Missense_Mutation	DNP	AC	GA	GA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP32	9743	broad.mit.edu	37	11	128856792	128856792	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARL15	54622	broad.mit.edu	37	5	53526521	53526521	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARMCX3	51566	broad.mit.edu	37	X	100880148	100880148	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARRDC4	91947	broad.mit.edu	37	15	98509183	98509183	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	3028172	3028172	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AR	367	broad.mit.edu	37	X	66789691	66789691	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120072980	120072980	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASTN2	23245	broad.mit.edu	37	9	120157847	120157847	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATAD2B	54454	broad.mit.edu	37	2	23977657	23977657	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF2	1386	broad.mit.edu	37	2	176001206	176001206	+	5'UTR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP5J	522	broad.mit.edu	37	21	27097451	27097451	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP6V0E1	8992	broad.mit.edu	37	5	172410781	172410781	+	5'UTR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B4	79895	broad.mit.edu	37	15	50223307	50223307	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117001379	117001379	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76854957	76854957	+	Nonsense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRX	546	broad.mit.edu	37	X	76920135	76920135	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11029709	11029710	+	3'UTR	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69492670	69492670	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BBS2	583	broad.mit.edu	37	16	56553553	56553553	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCL11A	53335	broad.mit.edu	37	2	60773526	60773526	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BDNFOS	497258	broad.mit.edu	37	11	27548629	27548629	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32673741	32673741	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMP6	654	broad.mit.edu	37	6	7855022	7855022	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMS1	9790	broad.mit.edu	37	10	43292056	43292056	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BOD1L	259282	broad.mit.edu	37	4	13590377	13590377	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRCA2	675	broad.mit.edu	37	13	32912687	32912687	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSND	7809	broad.mit.edu	37	1	55474144	55474144	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf73	51501	broad.mit.edu	37	11	86023489	86023489	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf12	196477	broad.mit.edu	37	12	91347827	91347827	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf42	374470	broad.mit.edu	37	12	103691530	103691530	+	Intron	SNP	C	A	A	rs146006207		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97060783	97060783	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C13orf18	80183	broad.mit.edu	37	13	46919590	46919590	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf145	145508	broad.mit.edu	37	14	81259422	81259422	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf51	196968	broad.mit.edu	37	15	100331113	100331113	+	RNA	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf18	147685	broad.mit.edu	37	19	58472920	58472920	+	Splice_Site	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf2	8725	broad.mit.edu	37	19	30414693	30414693	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C19orf45	374877	broad.mit.edu	37	19	7570505	7570505	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf162	128346	broad.mit.edu	37	1	112020713	112020713	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75038498	75038498	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf87	127795	broad.mit.edu	37	1	60520941	60520941	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf114	92747	broad.mit.edu	37	20	31890881	31890881	+	Splice_Site	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf34	388815	broad.mit.edu	37	21	17911579	17911579	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf78	388960	broad.mit.edu	37	2	74042111	74042111	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf89	129293	broad.mit.edu	37	2	85057889	85057889	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf67	200844	broad.mit.edu	37	3	58817568	58817568	+	Silent	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf51	285636	broad.mit.edu	37	5	41904407	41904407	+	5'Flank	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf58	133874	broad.mit.edu	37	5	169674877	169674877	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf165	154313	broad.mit.edu	37	6	88119528	88119528	+	Intron	SNP	T	A	A	rs138786386	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf170	221322	broad.mit.edu	37	6	121401863	121401863	+	3'UTR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf217	100131814	broad.mit.edu	37	6	135955759	135955759	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf81	221481	broad.mit.edu	37	6	35705733	35705733	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf36	57002	broad.mit.edu	37	7	39610245	39610245	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C8orf34	116328	broad.mit.edu	37	8	69523586	69523586	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C9orf50	375759	broad.mit.edu	37	9	132375845	132375845	+	Silent	SNP	G	T	T	rs139948871		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA10	56934	broad.mit.edu	37	17	49984197	49984197	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CA6	765	broad.mit.edu	37	1	9023451	9023451	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1A	773	broad.mit.edu	37	19	13395964	13395964	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181535977	181535977	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181702596	181702596	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1E	777	broad.mit.edu	37	1	181759712	181759712	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54690662	54690662	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CADM2	253559	broad.mit.edu	37	3	85775707	85775707	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CALD1	800	broad.mit.edu	37	7	134552432	134552432	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMKV	79012	broad.mit.edu	37	3	49897636	49897637	+	Missense_Mutation	DNP	TC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAND1	55832	broad.mit.edu	37	12	67699344	67699344	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN11	11131	broad.mit.edu	37	6	44147422	44147422	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN6	827	broad.mit.edu	37	X	110511783	110511783	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ2	845	broad.mit.edu	37	1	116260499	116260500	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC109B	55013	broad.mit.edu	37	4	110560131	110560131	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC122	160857	broad.mit.edu	37	13	44430575	44430575	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC122	160857	broad.mit.edu	37	13	44430621	44430621	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC41	51134	broad.mit.edu	37	12	94817696	94817696	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC46	201134	broad.mit.edu	37	17	64171266	64171266	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC88B	283234	broad.mit.edu	37	11	64108006	64108006	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNA1	8900	broad.mit.edu	37	13	37016255	37016255	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNYL1	151195	broad.mit.edu	37	2	208611892	208611892	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT6A	908	broad.mit.edu	37	7	56125832	56125832	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD200R1	131450	broad.mit.edu	37	3	112643970	112643970	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD99L2	83692	broad.mit.edu	37	X	150046101	150046101	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	21882883	21882883	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH12	1010	broad.mit.edu	37	5	22687184	22687184	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH17	1015	broad.mit.edu	37	8	95225535	95225535	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH24	64403	broad.mit.edu	37	14	23523666	23523666	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH4	1002	broad.mit.edu	37	20	59959334	59959334	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH5	1003	broad.mit.edu	37	16	66420949	66420949	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31299735	31299735	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDK6	1021	broad.mit.edu	37	7	92291330	92291330	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR2	27443	broad.mit.edu	37	22	18022674	18022674	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR5	27440	broad.mit.edu	37	22	17629269	17629269	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR6	27439	broad.mit.edu	37	22	17601064	17601064	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25459510	25459511	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CEP350	9857	broad.mit.edu	37	1	180013210	180013210	+	Silent	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CETP	1071	broad.mit.edu	37	16	57012021	57012021	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFP	5199	broad.mit.edu	37	X	47489073	47489073	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CGB8	94115	broad.mit.edu	37	19	49552054	49552054	+	5'UTR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLDN11	5010	broad.mit.edu	37	3	170465549	170465549	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC3A	10143	broad.mit.edu	37	16	78061960	78061960	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLNS1A	1207	broad.mit.edu	37	11	77340700	77340700	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN1OS	116933	broad.mit.edu	37	3	150708891	150708891	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7289953	7289953	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLTCL1	8218	broad.mit.edu	37	22	19245911	19245911	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNBD1	168975	broad.mit.edu	37	8	88000029	88000029	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNOT7	29883	broad.mit.edu	37	8	17104211	17104211	+	5'Flank	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	146226730	146226730	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP2	26047	broad.mit.edu	37	7	147312998	147312998	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP3	79937	broad.mit.edu	37	9	39104435	39104435	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTNAP5	129684	broad.mit.edu	37	2	125611432	125611432	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL13A1	1305	broad.mit.edu	37	10	71588465	71588465	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121240416	121240416	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL14A1	7373	broad.mit.edu	37	8	121344786	121344786	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101759426	101759426	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101765657	101765657	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL16A1	1307	broad.mit.edu	37	1	32158316	32158316	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	56141452	56141452	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL5A3	50509	broad.mit.edu	37	19	10106290	10106290	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPG2	26958	broad.mit.edu	37	7	130352403	130352403	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPLX4	339302	broad.mit.edu	37	18	56963928	56963928	+	3'UTR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPNE4	131034	broad.mit.edu	37	3	131405752	131405752	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197411417	197411417	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR2	1395	broad.mit.edu	37	7	30693187	30693187	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAM	56253	broad.mit.edu	37	11	122720618	122720618	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAM	56253	broad.mit.edu	37	11	122722484	122722484	+	Nonsense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34088983	34088983	+	Silent	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113287540	113287541	+	Intron	DNP	GC	TA	TA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113395911	113395911	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113721315	113721315	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67703109	67703109	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67780018	67780018	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67883610	67883610	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	69094121	69094121	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16657034	16657034	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16709760	16709760	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf36	79742	broad.mit.edu	37	X	45017513	45017513	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf48	54967	broad.mit.edu	37	X	134299334	134299334	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C8	1558	broad.mit.edu	37	10	96802716	96802716	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2F1	1572	broad.mit.edu	37	19	42027911	42027911	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAB1	1600	broad.mit.edu	37	1	57756984	57756984	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAPK1	1612	broad.mit.edu	37	9	90321137	90321137	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCT	1638	broad.mit.edu	37	13	95120979	95120979	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCUN1D4	23142	broad.mit.edu	37	4	52729953	52729953	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDHD1	80821	broad.mit.edu	37	14	53581142	53581142	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDI1	414301	broad.mit.edu	37	11	103907501	103907501	+	5'UTR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DEFB110	245913	broad.mit.edu	37	6	49986847	49986847	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DENND5B	160518	broad.mit.edu	37	12	31632547	31632547	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGCR2	9993	broad.mit.edu	37	22	19044762	19044762	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKI	9162	broad.mit.edu	37	7	137096842	137096842	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX40	79665	broad.mit.edu	37	17	57647932	57647932	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIP2B	57609	broad.mit.edu	37	12	51017226	51017226	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLC1	10395	broad.mit.edu	37	8	12943415	12943415	+	Nonsense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMD	1756	broad.mit.edu	37	X	32490480	32490480	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMGDH	29958	broad.mit.edu	37	5	78359376	78359376	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMXL1	1657	broad.mit.edu	37	5	118506471	118506471	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7660322	7660322	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH2	146754	broad.mit.edu	37	17	7667525	7667525	+	Silent	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	21147483	21147483	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13737634	13737634	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNASE2B	58511	broad.mit.edu	37	1	84864322	84864322	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK1	1793	broad.mit.edu	37	10	129160164	129160164	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK4	9732	broad.mit.edu	37	7	111809820	111809820	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOK6	220164	broad.mit.edu	37	18	67490757	67490757	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPP10	57628	broad.mit.edu	37	2	116268762	116268762	+	Intron	SNP	T	C	C	rs35359921		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPPA2	151871	broad.mit.edu	37	3	109023523	109023523	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105396388	105396388	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYS	1807	broad.mit.edu	37	8	105456385	105456385	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAML1	57453	broad.mit.edu	37	11	117572678	117572678	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSCAM	1826	broad.mit.edu	37	21	42174562	42174562	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DSP	1832	broad.mit.edu	37	6	7578716	7578716	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32391955	32391955	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32455178	32455178	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUS2L	54920	broad.mit.edu	37	16	68088649	68088649	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP13	51207	broad.mit.edu	37	10	76855256	76855256	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP22	56940	broad.mit.edu	37	6	348140	348140	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP27	92235	broad.mit.edu	37	1	167097620	167097620	+	Silent	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46784713	46784713	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE1	1889	broad.mit.edu	37	1	21586902	21586907	+	Intron	DEL	TGGAGT	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDIL3	10085	broad.mit.edu	37	5	83445170	83445170	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELAVL2	1993	broad.mit.edu	37	9	23749045	23749045	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELP2	55250	broad.mit.edu	37	18	33718924	33718924	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMILIN2	84034	broad.mit.edu	37	18	2891408	2891408	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMP3	2014	broad.mit.edu	37	19	48830831	48830831	+	Silent	SNP	G	T	T	rs139549534		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENOX2	10495	broad.mit.edu	37	X	129966412	129966412	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA3	2042	broad.mit.edu	37	3	89499516	89499516	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96706208	96706208	+	Frame_Shift_Del	DEL	G	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA6	285220	broad.mit.edu	37	3	96909643	96909643	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHB1	2047	broad.mit.edu	37	3	134840051	134840051	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPSTI1	94240	broad.mit.edu	37	13	43565988	43565988	+	Intron	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERCC6	2074	broad.mit.edu	37	10	50668435	50668435	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERG	2078	broad.mit.edu	37	21	39823037	39823037	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI5L	115704	broad.mit.edu	37	19	7912614	7912614	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66019833	66019834	+	Intron	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EYS	346007	broad.mit.edu	37	6	66100703	66100703	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F8	2157	broad.mit.edu	37	X	154156922	154156922	+	Nonsense_Mutation	SNP	G	A	A	rs137852439		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124B	79843	broad.mit.edu	37	2	225244581	225244581	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139470988	139470988	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM187B	148109	broad.mit.edu	37	19	35718802	35718802	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM192A	80011	broad.mit.edu	37	16	57200991	57200991	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM19A1	407738	broad.mit.edu	37	3	68194303	68194303	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM55A	120400	broad.mit.edu	37	11	114392743	114392743	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190110889	190110889	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5C	339479	broad.mit.edu	37	1	190250613	190250613	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM63A	55793	broad.mit.edu	37	1	150970641	150970644	+	Frame_Shift_Del	DEL	AGTC	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83B	222584	broad.mit.edu	37	6	54743435	54743435	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33874426	33874426	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83C	128876	broad.mit.edu	37	20	33874929	33874929	+	Silent	SNP	G	T	T	rs114056675	byFrequency;by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM83D	81610	broad.mit.edu	37	20	37580763	37580763	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29464194	29464194	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FASTK	10922	broad.mit.edu	37	7	150774526	150774526	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150891687	150891687	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN1	2200	broad.mit.edu	37	15	48726890	48726890	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGR2C	9103	broad.mit.edu	37	1	161563248	161563248	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRLA	84824	broad.mit.edu	37	1	161680714	161680714	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125014506	125014506	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGB	2244	broad.mit.edu	37	4	155486973	155486973	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD3	89846	broad.mit.edu	37	9	95768376	95768376	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD3	80206	broad.mit.edu	37	18	34280963	34280963	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152282882	152282882	+	Missense_Mutation	SNP	C	T	T	rs147239265	byFrequency	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLI1	2313	broad.mit.edu	37	11	128680587	128680587	+	Nonsense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ37543	285668	broad.mit.edu	37	5	60956423	60956423	+	Intron	SNP	G	C	C	rs59585386		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28895700	28895700	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240341343	240341343	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMN2	56776	broad.mit.edu	37	1	240492906	240492906	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FOXP4	116113	broad.mit.edu	37	6	41557832	41557832	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD6	122786	broad.mit.edu	37	14	52043524	52043524	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37735540	37735540	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD4	9758	broad.mit.edu	37	X	12331437	12331437	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUS	2521	broad.mit.edu	37	16	31201808	31201808	+	Intron	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FXYD3	5349	broad.mit.edu	37	19	35610225	35610225	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FYN	2534	broad.mit.edu	37	6	112079997	112079997	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAB2	9846	broad.mit.edu	37	11	77988799	77988799	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46307650	46307650	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA4	2557	broad.mit.edu	37	4	46976423	46976423	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRB1	2560	broad.mit.edu	37	4	47221639	47221639	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161580089	161580089	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG3	2567	broad.mit.edu	37	15	27586218	27586218	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRQ	55879	broad.mit.edu	37	X	151812344	151812344	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT13	114805	broad.mit.edu	37	2	154759230	154759230	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT6	11226	broad.mit.edu	37	12	51771258	51771258	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173202496	173202496	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173301306	173301306	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL6	442117	broad.mit.edu	37	4	173503357	173503357	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCC1	79571	broad.mit.edu	37	7	127222355	127222355	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCK	2645	broad.mit.edu	37	7	44222280	44222280	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFOD1	54438	broad.mit.edu	37	6	13364943	13364943	+	3'UTR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GGCX	2677	broad.mit.edu	37	2	85783362	85783362	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB4	127534	broad.mit.edu	37	1	35226896	35226896	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GJB6	10804	broad.mit.edu	37	13	20797249	20797249	+	Frame_Shift_Del	DEL	T	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLE1	2733	broad.mit.edu	37	9	131285001	131285001	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLE1	2733	broad.mit.edu	37	9	131285503	131285503	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLE1	2733	broad.mit.edu	37	9	131285584	131285584	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLE1	2733	broad.mit.edu	37	9	131285737	131285737	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLE1	2733	broad.mit.edu	37	9	131285780	131285780	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLRA3	8001	broad.mit.edu	37	4	175660995	175660995	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLYATL1	92292	broad.mit.edu	37	11	58722740	58722740	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNAS	2778	broad.mit.edu	37	20	57448653	57448653	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNG4	2786	broad.mit.edu	37	1	235715384	235715384	+	3'UTR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GORASP2	26003	broad.mit.edu	37	2	171806362	171806362	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPC3	2719	broad.mit.edu	37	X	133065547	133065547	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPM6A	2823	broad.mit.edu	37	4	176625503	176625503	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135429739	135429739	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR125	166647	broad.mit.edu	37	4	22481511	22481511	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100365438	100365438	+	Missense_Mutation	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR65	8477	broad.mit.edu	37	14	88477589	88477589	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRB14	2888	broad.mit.edu	37	2	165383519	165383519	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87679774	87679774	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	93346793	93346793	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94145720	94145720	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94500270	94500270	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31201795	31201795	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK1	2897	broad.mit.edu	37	21	31250662	31250662	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN2B	2904	broad.mit.edu	37	12	13842391	13842391	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM8	2918	broad.mit.edu	37	7	126340072	126340072	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GTDC1	79712	broad.mit.edu	37	2	144704709	144704709	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYPC	2995	broad.mit.edu	37	2	127451562	127451562	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GYS2	2998	broad.mit.edu	37	12	21757474	21757474	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
H2AFY	9555	broad.mit.edu	37	5	134705049	134705049	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAND1	9421	broad.mit.edu	37	5	153857468	153857468	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAP1	9001	broad.mit.edu	37	17	39881467	39881467	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HCN1	348980	broad.mit.edu	37	5	45267328	45267328	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-G	3135	broad.mit.edu	37	6	29962834	29962834	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGCLL1	54511	broad.mit.edu	37	6	55360313	55360313	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173495991	173495991	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMP19	51617	broad.mit.edu	37	5	173525214	173525214	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNRNPUL1	11100	broad.mit.edu	37	19	41787192	41787192	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HPSE2	60495	broad.mit.edu	37	10	100773178	100773178	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HRH1	3269	broad.mit.edu	37	3	11272196	11272196	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22157749	22157749	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1F	3355	broad.mit.edu	37	3	88040437	88040437	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR3A	3359	broad.mit.edu	37	11	113857446	113857446	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IBTK	25998	broad.mit.edu	37	6	82911190	82911190	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF21	84966	broad.mit.edu	37	1	18560335	18560335	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF5	150084	broad.mit.edu	37	21	41130054	41130054	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF9B	22997	broad.mit.edu	37	11	133800868	133800868	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB1	3594	broad.mit.edu	37	19	18179326	18179326	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL7R	3575	broad.mit.edu	37	5	35874708	35874708	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPAD1	54928	broad.mit.edu	37	8	57878619	57878619	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IMPG1	3617	broad.mit.edu	37	6	76771176	76771176	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143039616	143039616	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143130048	143130048	+	Splice_Site	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP4B	8821	broad.mit.edu	37	4	143626087	143626087	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INSIG2	51141	broad.mit.edu	37	2	118856411	118856411	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INTU	27152	broad.mit.edu	37	4	128565196	128565196	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGQ	126298	broad.mit.edu	37	19	44096260	44096260	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISPD	729920	broad.mit.edu	37	7	16233802	16233802	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAE	3682	broad.mit.edu	37	17	3649219	3649219	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAM	3684	broad.mit.edu	37	16	31342908	31342908	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26572062	26572062	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITPR2	3709	broad.mit.edu	37	12	26636691	26636691	+	Silent	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAZ	23254	broad.mit.edu	37	1	15183792	15183792	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNAB1	7881	broad.mit.edu	37	3	156032440	156032440	+	Intron	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40321504	40321504	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	20731843	20731843	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21401795	21401795	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNIP4	80333	broad.mit.edu	37	4	21716106	21716106	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ3	3760	broad.mit.edu	37	2	155698054	155698054	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNJ6	3763	broad.mit.edu	37	21	39034611	39034611	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK2	3776	broad.mit.edu	37	1	215342705	215342705	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNU1	157855	broad.mit.edu	37	8	36698422	36698422	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0090	23065	broad.mit.edu	37	1	19563901	19563901	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57190412	57190412	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1549	57670	broad.mit.edu	37	7	138583815	138583815	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1755	85449	broad.mit.edu	37	20	36870263	36870263	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1958	158405	broad.mit.edu	37	9	115337206	115337206	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2026	158358	broad.mit.edu	37	9	5921211	5921211	+	Silent	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF2B	84643	broad.mit.edu	37	17	51902048	51902048	+	Missense_Mutation	SNP	C	A	A	rs114241810	byFrequency;by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	170003569	170003569	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR2DL3	3804	broad.mit.edu	37	19	55272500	55272500	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIR3DL1	3811	broad.mit.edu	37	19	55329629	55329629	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL3	84623	broad.mit.edu	37	11	126597386	126597386	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KISS1	3814	broad.mit.edu	37	1	204164502	204164502	+	Intron	SNP	T	C	C	rs115170052		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLF17	128209	broad.mit.edu	37	1	44588213	44588213	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL9	55958	broad.mit.edu	37	9	21334680	21334680	+	Missense_Mutation	SNP	T	C	C	rs140581276		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-8	728299	broad.mit.edu	37	21	32410821	32410821	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KSR2	283455	broad.mit.edu	37	12	118068541	118068541	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMB3	3914	broad.mit.edu	37	1	209797435	209797435	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183045997	183045998	+	Intron	INS	-	A	A	rs146909692	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183106849	183106849	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARS	51520	broad.mit.edu	37	5	145547791	145547791	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203740567	203740567	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCE1C	353133	broad.mit.edu	37	1	152777524	152777524	+	3'UTR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LDB2	9079	broad.mit.edu	37	4	16725237	16725237	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHFPL3	375612	broad.mit.edu	37	7	104172637	104172637	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRB2	10288	broad.mit.edu	37	19	54778643	54778643	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28371567	28371567	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIPK	643414	broad.mit.edu	37	10	90488327	90488327	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIX1	167410	broad.mit.edu	37	5	96444446	96444446	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMBR1	64327	broad.mit.edu	37	7	156524934	156524934	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMTK2	22853	broad.mit.edu	37	7	97822452	97822452	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100188947	100188947	broad.mit.edu	37	10	93349768	93349768	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100216001	100216001	broad.mit.edu	37	10	4679998	4679998	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC150568	150568	broad.mit.edu	37	2	105109639	105109639	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC153328	153328	broad.mit.edu	37	5	135178229	135178229	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC283867	283867	broad.mit.edu	37	16	65583482	65583482	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC285501	285501	broad.mit.edu	37	4	178786915	178786915	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC399744	399744	broad.mit.edu	37	10	38735774	38735774	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC645166	645166	broad.mit.edu	37	1	148945219	148945219	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647946	647946	broad.mit.edu	37	18	36904900	36904900	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC650623	650623	broad.mit.edu	37	10	81443989	81443989	+	RNA	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC728276	728276	broad.mit.edu	37	16	19307895	19307895	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62405331	62405331	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62599230	62599230	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPPR4	9890	broad.mit.edu	37	1	99771331	99771331	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRIG3	121227	broad.mit.edu	37	12	59300726	59300726	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141027816	141027816	+	Silent	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141172806	141172806	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	142271601	142271601	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRPPRC	10128	broad.mit.edu	37	2	44190820	44190821	+	Frame_Shift_Ins	INS	-	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC4C	57689	broad.mit.edu	37	11	41089838	41089838	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133596010	133596010	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70394370	70394370	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101554686	101554686	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSAMP	4045	broad.mit.edu	37	3	116163718	116163718	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LST-3TM12	338821	broad.mit.edu	37	12	21207544	21207544	+	Silent	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33525459	33525459	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTBP1	4052	broad.mit.edu	37	2	33622279	33622279	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUM	4060	broad.mit.edu	37	12	91502777	91502777	+	5'UTR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LUZP4	51213	broad.mit.edu	37	X	114536449	114536449	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEL2	54551	broad.mit.edu	37	15	23890168	23890168	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN1A2	10905	broad.mit.edu	37	1	118065406	118065406	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109049199	109049199	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K3	5606	broad.mit.edu	37	17	21208499	21208499	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8	5599	broad.mit.edu	37	10	49634682	49634682	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH11	441061	broad.mit.edu	37	5	16077114	16077114	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH1	55016	broad.mit.edu	37	4	164592634	164592634	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARCH4	57574	broad.mit.edu	37	2	217214873	217214873	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MARK4	57787	broad.mit.edu	37	19	45769480	45769480	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MATN2	4147	broad.mit.edu	37	8	98932716	98932716	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED24	9862	broad.mit.edu	37	17	38188962	38188962	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAT5B	146664	broad.mit.edu	37	17	74936669	74936669	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR519A2	574500	broad.mit.edu	37	19	54265669	54265669	+	RNA	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR890	100126303	broad.mit.edu	37	X	145077972	145077972	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151856048	151856048	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MME	4311	broad.mit.edu	37	3	154878148	154878148	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MMGT1	93380	broad.mit.edu	37	X	135047163	135047163	+	3'UTR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MORC1	27136	broad.mit.edu	37	3	108723574	108723574	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOV10L1	54456	broad.mit.edu	37	22	50563938	50563938	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTHFD1L	25902	broad.mit.edu	37	6	151288043	151288043	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTNR1B	4544	broad.mit.edu	37	11	92700344	92700344	+	5'Flank	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTUS2	23281	broad.mit.edu	37	13	29841810	29841810	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9058462	9058462	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH3	4621	broad.mit.edu	37	17	10538233	10538233	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10350502	10350502	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23853924	23853924	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYLK	4638	broad.mit.edu	37	3	123451651	123451651	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO18B	84700	broad.mit.edu	37	22	26284354	26284354	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOF	26509	broad.mit.edu	37	10	95152686	95152686	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYT1L	23040	broad.mit.edu	37	2	2229063	2229063	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT6	24142	broad.mit.edu	37	3	50334635	50334635	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAV3	89795	broad.mit.edu	37	12	78333903	78333903	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15386637	15386637	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF10	100132406	broad.mit.edu	37	1	145359323	145359323	+	Intron	SNP	A	G	G	rs141280505	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF15	284565	broad.mit.edu	37	1	148560548	148560548	+	5'Flank	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCALD	83988	broad.mit.edu	37	8	103091024	103091024	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAM1	4684	broad.mit.edu	37	11	112906098	112906098	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCAPG	64151	broad.mit.edu	37	4	17834753	17834753	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDST1	3340	broad.mit.edu	37	5	149922711	149922711	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFB5	4711	broad.mit.edu	37	3	179341712	179341712	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFS2	4720	broad.mit.edu	37	1	161172232	161172232	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	55839416	55839416	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEDD4L	23327	broad.mit.edu	37	18	55958349	55958349	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27161276	27161276	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK3	4752	broad.mit.edu	37	13	52710350	52710350	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK5	341676	broad.mit.edu	37	13	52667205	52667205	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NETO1	81832	broad.mit.edu	37	18	70531933	70531933	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD2	4761	broad.mit.edu	37	17	37762594	37762594	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204923422	204923422	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFASC	23114	broad.mit.edu	37	1	204970212	204970212	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFE2L3	9603	broad.mit.edu	37	7	26224038	26224038	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFRKB	4798	broad.mit.edu	37	11	129751595	129751595	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NGEF	25791	broad.mit.edu	37	2	233785158	233785158	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NID1	4811	broad.mit.edu	37	1	236177011	236177011	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NIN	51199	broad.mit.edu	37	14	51243814	51243814	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC4	58484	broad.mit.edu	37	2	32458251	32458251	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP8	126205	broad.mit.edu	37	19	56491085	56491085	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRX1	79671	broad.mit.edu	37	11	119045890	119045890	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOD2	64127	broad.mit.edu	37	16	50744599	50744599	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOS1AP	9722	broad.mit.edu	37	1	162175442	162175442	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOVA1	4857	broad.mit.edu	37	14	27006965	27006965	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRSN1	140767	broad.mit.edu	37	6	24145856	24145856	+	Silent	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50171358	50171358	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50663800	50663800	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	78687935	78687935	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN3	9369	broad.mit.edu	37	14	79942991	79942991	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSUN2	54888	broad.mit.edu	37	5	6609940	6609940	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTM	50863	broad.mit.edu	37	11	132084641	132084641	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NTRK1	4914	broad.mit.edu	37	1	156834337	156834337	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP93	9688	broad.mit.edu	37	16	56812514	56812514	+	Intron	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXN	64359	broad.mit.edu	37	17	819061	819061	+	Intron	SNP	T	C	C	rs117680068	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ3	55714	broad.mit.edu	37	4	183522271	183522271	+	Nonsense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	78381153	78381153	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ4	26011	broad.mit.edu	37	11	79095141	79095141	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390436	158390436	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247836151	247836151	+	Missense_Mutation	SNP	C	G	G	rs141463427		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1A2	26189	broad.mit.edu	37	17	3101421	3101421	+	Silent	SNP	C	T	T	rs150553361	byFrequency	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR1J2	26740	broad.mit.edu	37	9	125274018	125274019	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2G6	391211	broad.mit.edu	37	1	248685578	248685578	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4K13	390433	broad.mit.edu	37	14	20502530	20502530	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4S2	219431	broad.mit.edu	37	11	55419256	55419256	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52J3	119679	broad.mit.edu	37	11	5068378	5068378	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N1	79473	broad.mit.edu	37	11	5809704	5809704	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M11	219487	broad.mit.edu	37	11	56310370	56310370	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380754	56380754	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR7C2	26658	broad.mit.edu	37	19	15052159	15052159	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	31823045	31823045	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD7A	161725	broad.mit.edu	37	15	32060223	32060223	+	Intron	SNP	C	A	A	rs147414182	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAH	5053	broad.mit.edu	37	12	103240578	103240578	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK1	5058	broad.mit.edu	37	11	77175292	77175292	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PALM2-AKAP2	445815	broad.mit.edu	37	9	112642844	112642844	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAMR1	25891	broad.mit.edu	37	11	35492305	35492305	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA	5069	broad.mit.edu	37	9	119013312	119013312	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	205989156	205989156	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206150172	206150172	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARD3B	117583	broad.mit.edu	37	2	206440512	206440512	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	161768849	161768849	+	3'UTR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARK2	5071	broad.mit.edu	37	6	162450228	162450228	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARN	5073	broad.mit.edu	37	16	14708510	14708510	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207420	58207420	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH1	5097	broad.mit.edu	37	5	141248394	141248394	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA10	56139	broad.mit.edu	37	5	140237858	140237858	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHA7	56141	broad.mit.edu	37	5	140215571	140215571	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHB8	56128	broad.mit.edu	37	5	140558412	140558412	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA8	9708	broad.mit.edu	37	5	140773370	140773370	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCLO	27445	broad.mit.edu	37	7	82764767	82764767	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNXL2	80003	broad.mit.edu	37	1	233236775	233236775	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD10	11235	broad.mit.edu	37	3	167422592	167422592	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105173785	105173785	+	Silent	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDCD11	22984	broad.mit.edu	37	10	105191997	105191997	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE11A	50940	broad.mit.edu	37	2	178565928	178565928	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDLIM5	10611	broad.mit.edu	37	4	95387121	95387121	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDZRN3	23024	broad.mit.edu	37	3	73647838	73647838	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PECR	55825	broad.mit.edu	37	2	216884141	216884141	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PEPD	5184	broad.mit.edu	37	19	34002118	34002118	+	Intron	DEL	C	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PFKFB1	5207	broad.mit.edu	37	X	54978397	54978397	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGK2	5232	broad.mit.edu	37	6	49754451	49754451	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP3	114771	broad.mit.edu	37	1	153276264	153276264	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHLDB1	23187	broad.mit.edu	37	11	118498238	118498238	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHTF2	57157	broad.mit.edu	37	7	77569753	77569753	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIK3C3	5289	broad.mit.edu	37	18	39623730	39623730	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIP4K2A	5305	broad.mit.edu	37	10	22903326	22903326	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM3	83394	broad.mit.edu	37	17	6367062	6367063	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PITPNM3	83394	broad.mit.edu	37	17	6367254	6367254	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51827274	51827274	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKP2	5318	broad.mit.edu	37	12	33022024	33022024	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G5	5322	broad.mit.edu	37	1	20361463	20361463	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLB1	151056	broad.mit.edu	37	2	28855912	28855912	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCXD3	345557	broad.mit.edu	37	5	41505008	41505008	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLD5	200150	broad.mit.edu	37	1	242481247	242481247	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEC	5339	broad.mit.edu	37	8	144993934	144993934	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA7	144100	broad.mit.edu	37	11	16876505	16876505	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLK1	5347	broad.mit.edu	37	16	23700048	23700048	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD3	8985	broad.mit.edu	37	7	100853594	100853594	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA2	5362	broad.mit.edu	37	1	208257636	208257645	+	Intron	DEL	CCGGAAGCCA	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131895691	131895691	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	132292890	132292890	+	Intron	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNC1	10154	broad.mit.edu	37	12	94589145	94589145	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMEPA1	56937	broad.mit.edu	37	20	56227579	56227579	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMFBP1	83449	broad.mit.edu	37	16	72186356	72186356	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPFIA2	8499	broad.mit.edu	37	12	82060473	82060473	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R4	5524	broad.mit.edu	37	9	131877922	131877922	+	Intron	DEL	T	-	-	rs10706402		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRB4	5545	broad.mit.edu	37	12	11201408	11201408	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM12	59335	broad.mit.edu	37	9	133539667	133539667	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23524602	23524602	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PROM1	8842	broad.mit.edu	37	4	15981094	15981094	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS16	10279	broad.mit.edu	37	6	27220923	27220923	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRSS1	5644	broad.mit.edu	37	7	142458572	142458572	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSD4	23550	broad.mit.edu	37	2	113953245	113953245	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG1	5669	broad.mit.edu	37	19	43352068	43352068	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMB3	5691	broad.mit.edu	37	17	36908933	36908933	+	5'Flank	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSMF1	9491	broad.mit.edu	37	20	1097853	1097853	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8317961	8317961	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8372141	8372141	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRR	5801	broad.mit.edu	37	12	71065710	71065710	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40827614	40827614	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYGB	5834	broad.mit.edu	37	20	25276279	25276279	+	Silent	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PYHIN1	149628	broad.mit.edu	37	1	158924983	158924983	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36207850	36207850	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGAPA1	253959	broad.mit.edu	37	14	36219737	36219737	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85292360	85292361	+	Intron	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3	8498	broad.mit.edu	37	19	5928017	5928017	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RARB	5915	broad.mit.edu	37	3	25632055	25632055	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RCN1	5954	broad.mit.edu	37	11	32122135	32122136	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103292315	103292315	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RELN	5649	broad.mit.edu	37	7	103629671	103629671	+	Frame_Shift_Del	DEL	C	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
REXO1L1	254958	broad.mit.edu	37	8	86572109	86572109	+	3'UTR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFC2	5982	broad.mit.edu	37	7	73176927	73176927	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX4	5992	broad.mit.edu	37	12	107048233	107048233	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RGNEF	64283	broad.mit.edu	37	5	72940561	72940561	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHAG	6005	broad.mit.edu	37	6	49578832	49578832	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RHOJ	57381	broad.mit.edu	37	14	63735905	63735905	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	104930646	104930646	+	Intron	SNP	C	A	A	rs35503346		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIT2	6014	broad.mit.edu	37	18	40411755	40411755	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RMND5A	64795	broad.mit.edu	37	2	87131233	87131233	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78940031	78940031	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO4	54538	broad.mit.edu	37	11	124756441	124756441	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RP1L1	94137	broad.mit.edu	37	8	10469930	10469930	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPH3A	22895	broad.mit.edu	37	12	113216715	113216715	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPL7L1	285855	broad.mit.edu	37	6	42847687	42847687	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RRS1	23212	broad.mit.edu	37	8	67341476	67341476	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTL1	388015	broad.mit.edu	37	14	101349397	101349397	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR1	6261	broad.mit.edu	37	19	39052178	39052178	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237619799	237619799	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237765336	237765336	+	Silent	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237796720	237796720	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237872294	237872294	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237924654	237924654	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A7L2	645922	broad.mit.edu	37	1	153409477	153409477	+	3'UTR	DEL	G	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAAL1	113174	broad.mit.edu	37	11	18105129	18105129	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD7	344658	broad.mit.edu	37	3	169656341	169656341	+	3'UTR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAP30	8819	broad.mit.edu	37	4	174292744	174292744	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SDK1	221935	broad.mit.edu	37	7	4285260	4285260	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84751073	84751073	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3E	9723	broad.mit.edu	37	7	82997074	82997074	+	Missense_Mutation	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA4A	64218	broad.mit.edu	37	1	156144918	156144918	+	Silent	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA5A	9037	broad.mit.edu	37	5	9320601	9320601	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48022736	48022736	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48056282	48056282	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERAC1	84947	broad.mit.edu	37	6	158571665	158571665	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINB9	5272	broad.mit.edu	37	6	2900992	2900992	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SESN2	83667	broad.mit.edu	37	1	28595662	28595662	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SGCD	6444	broad.mit.edu	37	5	155752859	155752859	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH3TC2	79628	broad.mit.edu	37	5	148392039	148392039	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3682056	3682056	+	Silent	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC6	946	broad.mit.edu	37	19	52033197	52033197	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIK3	23387	broad.mit.edu	37	11	116747710	116747710	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1L1	26037	broad.mit.edu	37	14	72190349	72190349	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB2	284759	broad.mit.edu	37	20	1471924	1471924	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164735438	164735438	+	Silent	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SI	6476	broad.mit.edu	37	3	164735848	164735848	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A3	6559	broad.mit.edu	37	16	56903776	56903776	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44686312	44686312	+	3'UTR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	42940276	42940276	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43204647	43204647	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A4	10050	broad.mit.edu	37	6	25779052	25779052	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22362974	22362974	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22381091	22381091	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC23A2	9962	broad.mit.edu	37	20	4871812	4871812	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92279457	92279457	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC2A13	114134	broad.mit.edu	37	12	40392250	40392250	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC35B3	51000	broad.mit.edu	37	6	8422641	8422641	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75680244	75680244	+	Intron	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A5	204962	broad.mit.edu	37	1	75792495	75792495	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33947341	33947341	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A11	6538	broad.mit.edu	37	3	10881996	10881996	+	Intron	SNP	A	G	G	rs113649280	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A2	6530	broad.mit.edu	37	16	55728470	55728470	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21457542	21457542	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1A2	6579	broad.mit.edu	37	12	21471552	21471552	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO1C1	53919	broad.mit.edu	37	12	20896346	20896346	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT2	9353	broad.mit.edu	37	4	20547749	20547749	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCAD1	56916	broad.mit.edu	37	4	95210562	95210562	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18887484	18887484	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246165822	246165822	+	Intron	SNP	A	G	G	rs75154600		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMYD3	64754	broad.mit.edu	37	1	246513285	246513285	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP47	116841	broad.mit.edu	37	1	227935377	227935377	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAP91	9892	broad.mit.edu	37	6	84336993	84336993	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRNP27	11017	broad.mit.edu	37	2	70129595	70129595	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNRPD3	6634	broad.mit.edu	37	22	24964112	24964112	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTB1	6641	broad.mit.edu	37	8	121740648	121740648	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51046156	51046156	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51075444	51075444	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108412234	108412234	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS1	114815	broad.mit.edu	37	10	108459151	108459151	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	23696396	23696396	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOX5	6660	broad.mit.edu	37	12	24538804	24538804	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG1	6674	broad.mit.edu	37	8	101251339	101251339	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPARC	6678	broad.mit.edu	37	5	151051275	151051275	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52938246	52938246	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52955248	52955248	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEF2	79925	broad.mit.edu	37	5	35739981	35739981	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPEG	10290	broad.mit.edu	37	2	220333907	220333907	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPOCK3	50859	broad.mit.edu	37	4	168004244	168004244	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPPL3	121665	broad.mit.edu	37	12	121229395	121229395	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPRR3	6707	broad.mit.edu	37	1	152976035	152976036	+	3'UTR	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158641242	158641242	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM4	84530	broad.mit.edu	37	12	119538565	119538565	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSFA2	6744	broad.mit.edu	37	2	182785416	182785416	+	Intron	DEL	G	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SSPO	23145	broad.mit.edu	37	7	149523941	149523941	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL3	6487	broad.mit.edu	37	1	44383532	44383532	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST6GALNAC3	256435	broad.mit.edu	37	1	76940071	76940071	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STAB2	55576	broad.mit.edu	37	12	104149122	104149122	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD13	90627	broad.mit.edu	37	13	33838512	33838512	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STARD8	9754	broad.mit.edu	37	X	67882458	67882458	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32A	202374	broad.mit.edu	37	5	146747218	146747218	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5080286	5080286	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STK32B	55351	broad.mit.edu	37	4	5251161	5251161	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX1B	112755	broad.mit.edu	37	16	31008351	31008351	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUGT1P1	441394	broad.mit.edu	37	9	33382830	33382830	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SULT1E1	6783	broad.mit.edu	37	4	70707860	70707860	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUMF1	285362	broad.mit.edu	37	3	4297382	4297382	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2B	9899	broad.mit.edu	37	15	91832548	91832548	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SV2C	22987	broad.mit.edu	37	5	75427579	75427579	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SVOPL	136306	broad.mit.edu	37	7	138333867	138333867	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152712447	152712447	+	Missense_Mutation	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYPL2	284612	broad.mit.edu	37	1	110022016	110022016	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT6	148281	broad.mit.edu	37	1	114669265	114669265	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAB3	257397	broad.mit.edu	37	X	30970573	30970573	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAPBP	6892	broad.mit.edu	37	6	33281883	33281883	+	5'UTR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TASP1	55617	broad.mit.edu	37	20	13421541	13421541	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D5	9779	broad.mit.edu	37	3	17747525	17747525	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHH	7062	broad.mit.edu	37	1	152083862	152083862	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151748214	151748214	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEX14	56155	broad.mit.edu	37	17	56638913	56638913	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TFAP2D	83741	broad.mit.edu	37	6	50696895	50696895	+	Intron	DEL	G	-	-			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM3	7053	broad.mit.edu	37	20	2298023	2298023	+	Frame_Shift_Del	DEL	G	-	-	rs146568830	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	133948137	133948137	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THOP1	7064	broad.mit.edu	37	19	2790328	2790328	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD1	55901	broad.mit.edu	37	13	52971719	52971719	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLE4	7091	broad.mit.edu	37	9	82207140	82207140	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM145	284339	broad.mit.edu	37	19	42827826	42827827	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM164	84187	broad.mit.edu	37	X	109396831	109396831	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM45A	55076	broad.mit.edu	37	3	100273808	100273808	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM5	10329	broad.mit.edu	37	12	64198005	64198005	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226046847	226046847	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM74	157753	broad.mit.edu	37	8	109688957	109688957	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM74	157753	broad.mit.edu	37	8	109707986	109707986	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM74	157753	broad.mit.edu	37	8	109797367	109797367	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMOD1	7111	broad.mit.edu	37	9	100326299	100326299	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMSB15A	11013	broad.mit.edu	37	X	101770133	101770133	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFAIP8L3	388121	broad.mit.edu	37	15	51397204	51397204	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3K	51086	broad.mit.edu	37	1	74880398	74880398	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNI3	7137	broad.mit.edu	37	19	55665443	55665443	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175457717	175457717	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNR	7143	broad.mit.edu	37	1	175661691	175661691	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS1	7145	broad.mit.edu	37	2	218670343	218670343	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNS3	64759	broad.mit.edu	37	7	47384613	47384613	+	Missense_Mutation	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPR	7175	broad.mit.edu	37	1	186326650	186326650	+	Nonsense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10970051	10970051	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	72680615	72680615	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHDE	29953	broad.mit.edu	37	12	73012754	73012754	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM5	85363	broad.mit.edu	37	11	5949893	5949893	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPC4	7223	broad.mit.edu	37	13	38396057	38396057	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77438473	77438473	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116427152	116427152	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPS1	7227	broad.mit.edu	37	8	116605145	116605145	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHR	7253	broad.mit.edu	37	14	81450136	81450136	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51601107	51601107	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSHZ2	128553	broad.mit.edu	37	20	51895109	51895109	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC28	23331	broad.mit.edu	37	22	28439634	28439634	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC29	83894	broad.mit.edu	37	4	147645347	147645347	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTLL7	79739	broad.mit.edu	37	1	84373139	84373139	+	Silent	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179590742	179590742	+	Silent	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37924896	37924896	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88911387	88911387	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2E2	7325	broad.mit.edu	37	3	23574055	23574055	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBR5	51366	broad.mit.edu	37	8	103338891	103338891	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT3A1	133688	broad.mit.edu	37	5	35998286	35998286	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UHRF1BP1L	23074	broad.mit.edu	37	12	100451511	100451511	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK2	9706	broad.mit.edu	37	17	19705198	19705198	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ULK4	54986	broad.mit.edu	37	3	41504623	41504623	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13A	23025	broad.mit.edu	37	19	17779067	17779067	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC13C	440279	broad.mit.edu	37	15	54586337	54586337	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC93A	54346	broad.mit.edu	37	6	167711434	167711434	+	Silent	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UPP2	151531	broad.mit.edu	37	2	158964303	158964303	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCR11	10975	broad.mit.edu	37	19	1599339	1599339	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216380527	216380527	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP20	10868	broad.mit.edu	37	9	132631133	132631133	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP54	159195	broad.mit.edu	37	10	75301079	75301079	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTS2D	257313	broad.mit.edu	37	3	191018091	191018091	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	10583022	10583022	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107446213	107446213	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	107789753	107789753	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	108317906	108317906	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109223582	109223582	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109262998	109262998	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109297809	109297809	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	109778848	109778848	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111308299	111308299	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	111440681	111440681	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	112165351	112165351	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	117757567	117757567	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	118161258	118161258	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	119684313	119684313	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	122034176	122034176	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	132329773	132329773	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133252171	133252171	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	133375366	133375366	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	21672762	21672762	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	23142320	23142320	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31116292	31116292	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	31586999	31586999	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3985844	3985844	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42374439	42374439	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42678101	42678101	+	IGR	SNP	G	T	T	rs149731495	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	44777457	44777457	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	48474068	48474068	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	49486783	49486783	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	54751928	54751928	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	60162185	60162185	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	8153124	8153124	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	85841707	85841707	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	92688972	92688972	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	105427887	105427887	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121859564	121859564	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	121859568	121859568	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15772629	15772629	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	15795608	15795608	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	19106006	19106006	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	22041564	22041564	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	24306662	24306662	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	26906318	26906318	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	34569116	34569116	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	38553345	38553345	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	38822763	38822763	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39152388	39152388	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39788252	39788252	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	39834917	39834917	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43095218	43095218	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43160526	43160526	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	43575805	43575805	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	44527467	44527467	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	48279683	48279683	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49104070	49104070	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55839118	55839118	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55882788	55882788	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56102595	56102595	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	59159441	59159441	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6066302	6066302	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6723575	6723575	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79354393	79354393	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	79896902	79896902	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	80260413	80260413	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90016919	90016919	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	90848608	90848608	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93935139	93935139	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	94646811	94646811	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	108656616	108656616	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	115607439	115607439	+	IGR	SNP	T	C	C	rs138370406	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	128716928	128716928	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	27379913	27379913	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33246340	33246340	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33643580	33643580	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34318302	34318302	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34465299	34465299	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	34558233	34558233	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	43067990	43067990	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	46075938	46075938	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	60323110	60323111	+	IGR	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61837695	61837695	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	61974374	61974374	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	78086781	78086781	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	78141222	78141222	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	82360699	82360699	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	82452376	82452376	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	90837487	90837488	+	IGR	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	97480690	97480690	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	101528116	101528116	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	103787846	103787846	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105095222	105095222	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	105252766	105252767	+	IGR	DNP	CA	AG	AG			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	106615732	106615732	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	107424476	107424476	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	37761080	37761080	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	43272187	43272187	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	43453386	43453386	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	48166912	48166912	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	53359029	53359029	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54043045	54043045	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	54711796	54711796	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	56160699	56160699	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	58546993	58546993	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	60896539	60896539	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65532423	65532423	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	65885121	65885121	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68485347	68485347	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	68489339	68489339	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	69933402	69933402	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	73870392	73870392	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75724657	75724657	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	76437936	76437936	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	79462808	79462808	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83663332	83663332	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	83876193	83876193	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	89096007	89096007	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	89096021	89096021	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	89781138	89781138	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91088573	91088573	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20137579	20137579	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	21484368	21484368	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	25899485	25899485	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28384039	28384039	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28531731	28531731	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	42010974	42010974	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	43491704	43491704	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	45332150	45332150	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	46843710	46843710	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48882110	48882110	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	48885455	48885455	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	56460206	56460206	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	61626213	61626213	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	78494156	78494156	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82383572	82383572	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82535632	82535632	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	82896850	82896850	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	83397054	83397054	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	85144886	85144886	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	85185539	85185539	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	85185588	85185588	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87298455	87298455	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87767462	87767462	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	87774596	87774596	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88012174	88012174	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	88066379	88066379	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96107843	96107843	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96108291	96108291	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	96442143	96442143	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97687881	97687881	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	97945178	97945178	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102389161	102389161	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20441324	20441324	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	36235926	36235926	+	IGR	SNP	G	A	A	rs117581869	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	55126596	55126596	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	60257009	60257009	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92241328	92241328	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	10372564	10372564	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	13851758	13851759	+	IGR	DNP	TC	CT	CT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	23001655	23001656	+	IGR	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	31861135	31861135	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32371802	32371802	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32617178	32617178	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424748	33424748	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33571968	33571968	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33629771	33629771	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33950492	33950492	+	IGR	SNP	C	T	T	rs35684175		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34570269	34570269	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	47806430	47806430	+	IGR	SNP	G	A	A	rs145343593	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	48559422	48559422	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	49205928	49205928	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60350311	60350311	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60510376	60510376	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	60549170	60549170	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62451856	62451856	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	62942301	62942301	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	65995944	65995944	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	74877108	74877108	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	76795114	76795114	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	77580285	77580285	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	87047642	87047642	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	14525756	14525756	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21520734	21520734	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	21556338	21556338	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25282203	25282203	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25291230	25291230	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	25582225	25582225	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	30080682	30080682	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33028423	33028423	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	33134640	33134640	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	39437094	39437094	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	50347868	50347868	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	50765218	50765218	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51015197	51015197	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51149179	51149179	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51506097	51506097	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	51512145	51512145	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	52643005	52643005	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	12179621	12179621	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	13934410	13934410	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14613761	14613761	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14980664	14980664	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	2474173	2474173	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	25919070	25919070	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26062706	26062706	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	26329586	26329586	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	31922726	31922726	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	36702079	36702079	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	37681164	37681164	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	38710685	38710685	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	38876742	38876742	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	39159589	39159589	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	41402831	41402831	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	46000974	46000974	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	49763750	49763750	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	53901685	53901685	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	60120793	60120793	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61351623	61351623	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	62903700	62903700	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	66134161	66134161	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68403305	68403305	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68446658	68446658	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68799010	68799010	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	73077036	73077036	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20666010	20666010	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	20691755	20691755	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22792936	22792936	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	31552593	31552593	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	32052050	32052050	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43877303	43877303	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	52011876	52011876	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53268370	53268370	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	55183539	55183539	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	100094276	100094276	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	102770181	102770181	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	106358713	106358713	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	107478836	107478836	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	116107651	116107651	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143282209	143282209	+	IGR	SNP	T	C	C	rs61786249	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152453780	152453780	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	152535720	152535720	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	153439831	153439831	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	157277254	157277254	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	160865731	160865731	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163226414	163226414	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163354752	163354752	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163635751	163635751	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163762237	163762237	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163959509	163959509	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	163989743	163989743	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164356262	164356262	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	164908903	164908903	+	IGR	SNP	T	A	A	rs141035691	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165589146	165589146	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165975172	165975172	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165991642	165991642	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	166474560	166474560	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172718343	172718343	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	172925190	172925190	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	173124341	173124341	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	175226583	175226583	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	176386414	176386414	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177543132	177543132	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	177750551	177750551	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	180499088	180499088	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	181217181	181217181	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	186530423	186530423	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	187149074	187149074	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	189806647	189806647	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	190571979	190571979	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192022139	192022139	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216173	192216173	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	205446624	205446624	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	208972444	208972444	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209277094	209277094	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209405798	209405798	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209683541	209683541	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209716010	209716010	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	209996180	209996180	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	216623982	216623982	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	216654547	216654547	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219704287	219704287	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219705915	219705915	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	219827307	219827307	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	220550578	220550578	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221123631	221123631	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221272233	221272233	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	221455689	221455689	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	222517880	222517880	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	232355280	232355280	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238115883	238115883	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	238205729	238205729	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	240120714	240120714	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	244291735	244291735	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247902089	247902089	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30119538	30119538	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30119541	30119541	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	31165485	31165485	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	36128540	36128540	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	37525403	37525403	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	61386816	61386816	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	64738795	64738795	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	74385951	74385951	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	79979081	79979081	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	81674453	81674453	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	83420354	83420354	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	87719175	87719176	+	IGR	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	96913851	96913851	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	98820843	98820843	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	98823403	98823403	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	12425046	12425046	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	21778849	21778849	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	26097877	26097877	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29452296	29452296	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	29604114	29604114	+	IGR	SNP	T	C	C	rs139889800	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	38614700	38614700	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	46711862	46711862	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	51454271	51454271	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	52500872	52500872	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	5519478	5519478	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	55616325	55616325	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	7361893	7361893	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10713963	10713963	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	10890098	10890099	+	IGR	DNP	CT	GG	GG			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	11181587	11181587	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14861474	14861474	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20333196	20333196	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	20645308	20645308	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	25044433	25044433	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	30091840	30091840	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	34569978	34569978	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	38719376	38719376	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	40310195	40310195	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	42527228	42527228	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	17336576	17336576	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	26472010	26472010	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	26496776	26496776	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27575807	27575807	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	27611209	27611209	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	29889528	29889528	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34986132	34986132	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	41115962	41115962	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	103997642	103997642	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	104936067	104936067	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	105417326	105417326	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106661513	106661513	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	107858168	107858168	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	111444150	111444150	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	115107463	115107463	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	116717694	116717694	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	116951584	116951584	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117085849	117085849	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117114746	117114747	+	IGR	DNP	CA	AT	AT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117268952	117268952	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117388197	117388197	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118241960	118241960	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	118431059	118431059	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	119319274	119319274	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	123567003	123567003	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	125813807	125813807	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	125982307	125982307	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	132814343	132814343	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13775010	13775010	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13775096	13775096	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	13775108	13775108	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140309803	140309803	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140929534	140929534	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	140931462	140931462	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143091457	143091457	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14884521	14884521	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	149555231	149555231	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	14959134	14959134	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	153993483	153993483	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154472760	154472760	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	154525606	154525606	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	156206583	156206583	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	156850576	156850576	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17027120	17027120	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17120395	17120395	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17671218	17671218	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	177491594	177491594	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	181312619	181312619	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	18670412	18670412	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	186920247	186920247	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	194994178	194994178	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	201159336	201159336	+	IGR	SNP	G	A	A	rs34432582		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	209970746	209970746	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	211847904	211847904	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	222901463	222901463	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	22329926	22329926	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	23074232	23074232	+	IGR	SNP	T	G	G	rs144654246	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	236042792	236042792	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	26906809	26906809	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	31118610	31118610	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	36030773	36030773	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	40921473	40921473	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	41446001	41446001	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	42246597	42246597	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	49566713	49566713	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	59513743	59513743	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	60207604	60207604	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	67848896	67848896	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81743326	81743326	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	83609876	83609876	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	84581860	84581860	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	88232232	88232232	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89147596	89147596	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91769732	91769732	+	IGR	SNP	G	C	C	rs113868867		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91791656	91791656	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91872898	91872898	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91924846	91924846	+	IGR	SNP	C	T	T	rs138856841	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	9785514	9785514	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	103455981	103455981	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	106036812	106036812	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	116798606	116798606	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	120338538	120338538	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	120504387	120504387	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	139213801	139213801	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142714566	142714566	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	142895245	142895245	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	146129035	146129035	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	150434924	150434924	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	157520085	157520085	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	161304823	161304823	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	168329464	168329464	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175985690	175985690	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	190099062	190099062	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	21247701	21247701	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	21338694	21338694	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	34120482	34120482	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	35647167	35647167	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	40740571	40740571	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	45301465	45301465	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	46438127	46438127	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	55190678	55190678	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	64999412	64999412	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76861093	76861093	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	76929379	76929379	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80425164	80425164	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	80478566	80478566	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	83049434	83049434	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	86530893	86530893	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	86625081	86625081	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	87100700	87100700	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	88818436	88818436	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	89117989	89117989	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	94351087	94351087	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	94930558	94930558	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96513498	96513499	+	IGR	DNP	GG	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	112992853	112992853	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116068290	116068290	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11644431	11644431	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	116918739	116918739	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	117198403	117198403	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	11795947	11795947	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	12402694	12402694	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	125282893	125282893	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	126801757	126801757	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	126811764	126811764	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	128139801	128139801	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	128261826	128261826	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	130971973	130971973	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13161549	13161549	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132117528	132117528	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	132616614	132616614	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	133933631	133933631	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134361183	134361183	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	134993479	134993479	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	146967125	146967125	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	150338460	150338460	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	150772925	150772925	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	15149841	15149841	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	152890675	152890676	+	IGR	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	154742692	154742692	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	155887533	155887533	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	160453592	160453592	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	160901144	160901144	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	163722803	163722803	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	168970388	168970388	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17149293	17149293	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	17325235	17325235	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174536995	174536995	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	174740028	174740028	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	177362797	177362797	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179164058	179164058	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179804452	179804452	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179805319	179805319	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	179911113	179911113	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	180052270	180052270	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18037486	18037486	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181134307	181134307	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	181247546	181247546	+	IGR	SNP	G	T	T	rs118029829	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	182751131	182751131	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	18365016	18365016	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	187941197	187941197	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	189539044	189539044	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190199015	190199015	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190560182	190560182	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	190653162	190653162	+	IGR	DEL	T	-	-	rs111944048		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	19097457	19097457	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	19126334	19126334	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	19834746	19834746	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22087337	22087337	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22686886	22686886	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	22871231	22871231	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28455125	28455125	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28481540	28481540	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28572825	28572825	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	28727876	28727876	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	30026750	30026750	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	31857786	31857786	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	36657359	36657359	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	4086195	4086196	+	IGR	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	43589903	43589903	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	46470946	46470946	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	53718474	53718474	+	IGR	SNP	C	A	A	rs138592568	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	58648801	58648801	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	59022825	59022825	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	59161852	59161852	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	61467460	61467460	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	63137854	63137854	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64217198	64217198	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64418623	64418624	+	IGR	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64939081	64939081	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66042611	66042611	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	66648153	66648153	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	78909646	78909646	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	82428035	82428035	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	90290381	90290381	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	9386037	9386037	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	96566123	96566123	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	97373890	97373890	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	98320813	98320813	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105751298	105751298	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	105876669	105876669	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	106176245	106176245	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107911936	107911936	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	108923996	108923996	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	113594758	113594758	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	116453223	116453223	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119178859	119178859	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	119320379	119320379	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	121121260	121121260	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	121384909	121384909	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	126479311	126479311	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	128142200	128142200	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	129184667	129184667	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	152565152	152565152	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	153272277	153272277	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154940768	154940768	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154949126	154949126	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	161727210	161727210	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	162999971	162999971	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165304158	165304158	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	165504685	165504685	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17034811	17034811	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	173788095	173788095	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	177512134	177512134	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	19200653	19200653	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	19329651	19329651	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20304371	20304371	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	23305023	23305023	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	24653910	24653910	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29219731	29219731	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29813805	29813805	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	29815316	29815316	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34472663	34472663	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34472672	34472672	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40246886	40246887	+	IGR	DNP	CA	AG	AG			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	40401373	40401373	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41284462	41284462	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	41697066	41697066	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	61280183	61280183	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	63728090	63728090	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	8094196	8094196	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84852811	84852811	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	88416371	88416371	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	89129186	89129186	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	89330839	89330839	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	97831894	97831894	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	102906683	102906683	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	103540473	103540473	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	104828241	104828241	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	116385938	116385938	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	125945168	125945168	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	131109420	131109420	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	155782188	155782188	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	15935367	15935367	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	164438131	164438131	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	16771817	16771818	+	IGR	INS	-	A	A	rs142211280	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	17326988	17326988	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	22506359	22506359	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	22806474	22806474	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	30937779	30937779	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	4202845	4202845	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	4689863	4689863	+	IGR	SNP	G	T	T	rs147037682	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	48117537	48117537	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	50194845	50194845	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	55276242	55276242	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	55603481	55603481	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	56894349	56894349	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	57977722	57977722	+	IGR	SNP	C	A	A	rs150273390	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	63296218	63296218	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	66574001	66574001	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	6774831	6774831	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	70370302	70370302	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	79863819	79863819	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87603594	87603594	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	94808835	94808835	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	95848107	95848107	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10364693	10364693	+	IGR	SNP	C	T	T	rs117401255	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	10418368	10418368	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	108952306	108952306	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	111295606	111295606	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	117553917	117553917	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	119208107	119208107	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124940745	124940745	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	125906465	125906465	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12832023	12832023	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	12834624	12834624	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131275672	131275672	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143720945	143720945	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	143763094	143763094	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145599507	145599507	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145609451	145609451	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	145634571	145634571	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	149855514	149855514	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	152609534	152609534	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	155647018	155647018	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	155651357	155651357	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	156076195	156076196	+	IGR	INS	-	TTC	TTC	rs145019395	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	24249300	24249300	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	24537086	24537086	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	46224441	46224441	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	49761044	49761044	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52582820	52582820	+	IGR	SNP	T	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	52792090	52792090	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53131574	53131574	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	54352667	54352667	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55024932	55024932	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57128469	57128469	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57268879	57268879	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57559841	57559841	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	61829849	61829849	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62498136	62498136	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63353990	63353990	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	65060604	65060604	+	IGR	SNP	A	T	T	rs80071336		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	79240261	79240261	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	84355798	84355798	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	87903729	87903729	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	92592685	92592685	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	103715391	103715391	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105390220	105390220	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105634721	105634721	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	105903711	105903711	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	106212709	106212709	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107110544	107110544	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	107827325	107827325	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	109123311	109123311	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	109398214	109398214	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	109862588	109862588	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	110243419	110243419	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112699145	112699145	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112752052	112752052	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	112983212	112983212	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	113208440	113208440	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	114775916	114775916	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	114961254	114961254	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116224470	116224470	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	116715105	116715105	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	120479459	120479459	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	122370278	122370278	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	124633450	124633450	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128125834	128125834	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	128146925	128146925	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	129638788	129638788	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132576534	132576534	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	132815289	132815289	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	134449297	134449297	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136067429	136067429	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	136799537	136799538	+	IGR	INS	-	C	C	rs141665609		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137226134	137226134	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137250783	137250783	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	137939748	137939748	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	138269759	138269759	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139555418	139555418	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	139589794	139589794	+	IGR	SNP	C	A	A	rs34274581		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	142651582	142651582	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	18309670	18309670	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	2329307	2329307	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	33992662	33992662	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	37369271	37369271	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	37388294	37388294	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43413782	43413782	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47335597	47335597	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47339229	47339229	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47343940	47343940	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	47491806	47491806	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50590022	50590022	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	50615174	50615174	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	51815962	51815962	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	53731171	53731171	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	55899820	55899820	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	57764091	57764091	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	59161298	59161298	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	60993992	60993992	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	61850895	61850896	+	IGR	DNP	GG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64364340	64364340	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	64810539	64810539	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	65323737	65323737	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	72579147	72579147	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	78859418	78859418	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	79047490	79047490	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	81871018	81871018	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83204827	83204827	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	83488842	83488842	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	86400387	86400387	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89389234	89389234	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	8956732	8956732	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	89913703	89913703	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	91216310	91216310	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	92630502	92630502	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94188577	94188577	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	94386798	94386798	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	98579910	98579911	+	IGR	INS	-	G	G	rs141662125	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	106713047	106713047	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	120359288	120359288	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121112189	121112189	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121297850	121297850	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	121884515	121884515	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	12684874	12684874	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	17837698	17837698	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	21696925	21696925	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22835660	22835660	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24536282	24536282	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	24539920	24539920	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	25469875	25469875	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	26450206	26450206	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	27905245	27905245	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29721412	29721412	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	36026311	36026311	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66312605	66312605	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	67094132	67094132	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68389977	68389977	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68477375	68477375	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7314926	7314927	+	IGR	DNP	CC	AA	AA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	74992726	74992727	+	IGR	DNP	CC	AG	AG			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	75808835	75808835	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	78361798	78361798	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	81658113	81658113	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	82382614	82382614	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	85217957	85217957	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	86631320	86631320	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	88072629	88072629	+	IGR	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	89751457	89751457	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	92943010	92943010	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	100008998	100008998	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	102962082	102962082	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106544600	106544601	+	IGR	DNP	CC	AG	AG			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	106776844	106776844	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	112208111	112208111	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	112725324	112725324	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	116258251	116258251	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	118619573	118619574	+	IGR	DNP	AG	TA	TA			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120469080	120469080	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	123237042	123237042	+	IGR	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124582410	124582410	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	124843059	124843059	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	125571305	125571305	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127832647	127832647	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	128234573	128234573	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134734135	134734135	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	138568190	138568190	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	139459457	139459457	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	141767773	141767773	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	142647070	142647070	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144475737	144475737	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	14480619	14480619	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	14490947	14490947	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	144955188	144955188	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145296265	145296265	+	IGR	SNP	C	T	T	rs147578607	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145502283	145502283	+	IGR	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	146867544	146867544	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	23086141	23086141	+	IGR	SNP	C	A	A	rs145936226	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	26178746	26178746	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	27597604	27597604	+	IGR	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	39807307	39807307	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	42262299	42262299	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	46046293	46046293	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49431209	49431209	+	IGR	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	64471635	64471635	+	IGR	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65294674	65294674	+	IGR	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	78347908	78347908	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	81555317	81555317	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	87015964	87015964	+	IGR	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	90320866	90320866	+	IGR	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	99406139	99406139	+	IGR	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	Y	13435088	13435088	+	IGR	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VENTXP1	139538	broad.mit.edu	37	X	26576251	26576251	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87018027	87018027	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VIT	5212	broad.mit.edu	37	2	36982177	36982178	+	Missense_Mutation	DNP	GA	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VWA3B	200403	broad.mit.edu	37	2	98779317	98779317	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WAS	7454	broad.mit.edu	37	X	48549500	48549500	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP11P1	441818	broad.mit.edu	37	18	30091980	30091980	+	RNA	SNP	C	T	T	rs79835848		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP1	23559	broad.mit.edu	37	2	74687542	74687543	+	Frame_Shift_Ins	INS	-	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR19	57728	broad.mit.edu	37	4	39233832	39233832	+	Silent	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR25	79446	broad.mit.edu	37	14	100921252	100921252	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR72	256764	broad.mit.edu	37	15	53961213	53961213	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDTC1	23038	broad.mit.edu	37	1	27624556	27624556	+	Missense_Mutation	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WEE2	494551	broad.mit.edu	37	7	141424003	141424003	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WISP1	8840	broad.mit.edu	37	8	134237689	134237689	+	Missense_Mutation	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WWOX	51741	broad.mit.edu	37	16	78570563	78570563	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XIST	7503	broad.mit.edu	37	X	73053169	73053169	+	RNA	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZBTB16	7704	broad.mit.edu	37	11	114117821	114117821	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFHX3	463	broad.mit.edu	37	16	72929416	72929416	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFPM2	23414	broad.mit.edu	37	8	106794576	106794576	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZFR	51663	broad.mit.edu	37	5	32403291	32403291	+	Missense_Mutation	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF165	7718	broad.mit.edu	37	6	28056534	28056534	+	Silent	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF215	7762	broad.mit.edu	37	11	6977244	6977244	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF260	339324	broad.mit.edu	37	19	37005994	37005994	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF354A	6940	broad.mit.edu	37	5	178153959	178153960	+	Intron	INS	-	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF536	9745	broad.mit.edu	37	19	31025865	31025865	+	Missense_Mutation	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF568	374900	broad.mit.edu	37	19	37441034	37441034	+	Missense_Mutation	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF592	9640	broad.mit.edu	37	15	85306520	85306520	+	Intron	SNP	C	G	G	rs140090499	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF595	152687	broad.mit.edu	37	4	62490	62490	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71607202	71607202	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF638	27332	broad.mit.edu	37	2	71607741	71607741	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF676	163223	broad.mit.edu	37	19	22363036	22363036	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF677	342926	broad.mit.edu	37	19	53747212	53747212	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF695	57116	broad.mit.edu	37	1	247150661	247150661	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF713	349075	broad.mit.edu	37	7	56006849	56006849	+	Missense_Mutation	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF90	7643	broad.mit.edu	37	19	20215248	20215248	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23542621	23542621	+	Nonsense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF98	148198	broad.mit.edu	37	19	22574939	22574940	+	Missense_Mutation	DNP	AG	TT	TT			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22939802	22939802	+	Silent	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNRF4	148066	broad.mit.edu	37	19	5456479	5456479	+	Missense_Mutation	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZP4	57829	broad.mit.edu	37	1	238053033	238053033	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZWINT	11130	broad.mit.edu	37	10	58121091	58121091	+	5'Flank	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	3454084	3454084	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104778347	104778347	+	RNA	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30852610	30852610	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	30926637	30926637	+	RNA	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	31026162	31026162	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45728116	45728116	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	45731538	45731538	+	5'Flank	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	81607597	81607597	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	9716829	9716829	+	RNA	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	22648738	22648738	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	91171484	91171484	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101522476	101522476	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101522478	101522478	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	28042125	28042125	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	98129537	98129537	+	Intron	SNP	A	G	G	rs116247854	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	20488814	20488814	+	RNA	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	22043436	22043436	+	5'Flank	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	92012328	92012328	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	34979319	34979319	+	5'Flank	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	17	76492015	76492015	+	5'Flank	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	112210	112210	+	Intron	SNP	G	C	C	rs79636396		TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	42108892	42108892	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	44877251	44877251	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61789864	61789864	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	61842574	61842574	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	72021504	72021504	+	Splice_Site	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142628885	142628885	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142653449	142653449	+	Intron	SNP	A	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142785202	142785202	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	142802693	142802693	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143120420	143120420	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	143120431	143120431	+	Intron	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	200422115	200422115	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	12284757	12284757	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	145477308	145477308	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	156946437	156946437	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	208086822	208086823	+	Intron	INS	-	A	A	rs139483999	by1000genomes	TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89544235	89544235	+	Intron	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	84765055	84765055	+	Intron	SNP	G	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	119550600	119550600	+	Intron	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	13798715	13798715	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	155598929	155598929	+	Intron	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69332570	69332570	+	Intron	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20640136	20640136	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	20640153	20640153	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	34193846	34193846	+	5'Flank	SNP	T	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	19126829	19126829	+	RNA	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	9897138	9897138	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142028511	142028511	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38398612	38398612	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63204680	63204680	+	5'Flank	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	123141623	123141623	+	5'Flank	SNP	C	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	75569345	75569345	+	Intron	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	22713703	22713703	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23549420	23549420	+	Intron	SNP	A	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	23553570	23553570	+	Intron	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66454965	66454965	+	RNA	SNP	C	G	G			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	66466693	66466693	+	RNA	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68414640	68414640	+	RNA	SNP	A	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68414852	68414852	+	RNA	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68723963	68723963	+	5'Flank	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	93280017	93280017	+	Intron	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	98774917	98774917	+	Missense_Mutation	SNP	G	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	10182	10182	+	5'Flank	SNP	G	A	A			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	11154	11154	+	RNA	SNP	T	C	C			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	M	16449	16449	+	RNA	SNP	C	T	T			TCGA-17-Z025-01A-01W-0746-08	TCGA-17-Z025-11A-01W-0746-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
