Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer
A2BP1	54715	broad.mit.edu	37	16	7743543	7743543	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9007509	9007509	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
A2ML1	144568	broad.mit.edu	37	12	9007509	9007509	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48416095	48416095	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48416095	48416095	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48416095	48416095	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA13	154664	broad.mit.edu	37	7	48654949	48654949	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA2	20	broad.mit.edu	37	9	139907067	139907067	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA2	20	broad.mit.edu	37	9	139907067	139907067	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94586508	94586508	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94586508	94586508	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCA4	24	broad.mit.edu	37	1	94586508	94586508	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87165936	87165936	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87165936	87165936	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB1	5243	broad.mit.edu	37	7	87165936	87165936	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87083942	87083942	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCB4	5244	broad.mit.edu	37	7	87083942	87083942	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17469910	17469910	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCC8	6833	broad.mit.edu	37	11	17469910	17469910	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	40012397	40012397	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	40012397	40012397	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD2	225	broad.mit.edu	37	12	40012397	40012397	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD4	5826	broad.mit.edu	37	14	74762796	74762796	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCD4	5826	broad.mit.edu	37	14	74762796	74762796	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183906244	183906244	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183906244	183906244	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCF3	55324	broad.mit.edu	37	3	183906244	183906244	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43711095	43711095	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43711095	43711095	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ABCG1	9619	broad.mit.edu	37	21	43711095	43711095	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76200678	76200678	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76209522	76209522	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76209522	76209522	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADM	34	broad.mit.edu	37	1	76209522	76209522	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADSB	36	broad.mit.edu	37	10	124813283	124813283	+	3'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADSB	36	broad.mit.edu	37	10	124813283	124813283	+	3'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACADSB	36	broad.mit.edu	37	10	124813283	124813283	+	3'UTR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE2	59272	broad.mit.edu	37	X	15607507	15607507	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE2	59272	broad.mit.edu	37	X	15607507	15607507	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACE2	59272	broad.mit.edu	37	X	15607507	15607507	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACER3	55331	broad.mit.edu	37	11	76726048	76726049	+	Intron	INS	-	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80626558	80626558	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80626558	80626558	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACOT12	134526	broad.mit.edu	37	5	80626558	80626558	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131323838	131323839	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131323838	131323839	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACSL6	23305	broad.mit.edu	37	5	131323838	131323839	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA2	59	broad.mit.edu	37	10	90699439	90699439	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA2	59	broad.mit.edu	37	10	90699439	90699439	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTA2	59	broad.mit.edu	37	10	90699439	90699439	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG2	72	broad.mit.edu	37	2	74146762	74146762	+	3'UTR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG2	72	broad.mit.edu	37	2	74146762	74146762	+	3'UTR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ACTG2	72	broad.mit.edu	37	2	74146762	74146762	+	3'UTR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207395588	207395588	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207408166	207408166	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207395588	207395588	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207408166	207408166	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM23	8745	broad.mit.edu	37	2	207395588	207395588	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM6	8755	broad.mit.edu	37	14	106714239	106714240	+	Intron	DEL	AC	-	-	rs112875057		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24350690	24350690	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24350690	24350690	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAM7	8756	broad.mit.edu	37	8	24350690	24350690	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72520242	72520242	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72520242	72520242	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS14	140766	broad.mit.edu	37	10	72520242	72520242	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5239326	5239326	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS16	170690	broad.mit.edu	37	5	5239326	5239326	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS1	9510	broad.mit.edu	37	21	28210368	28210368	+	Missense_Mutation	SNP	G	A	A	rs149580995	byFrequency	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28296390	28296390	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28296390	28296390	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADAMTS5	11096	broad.mit.edu	37	21	28296390	28296390	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45699928	45699928	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45699928	45699928	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY1	107	broad.mit.edu	37	7	45699928	45699928	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24800386	24800386	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24802138	24802138	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24800386	24800386	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24802138	24802138	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCY4	196883	broad.mit.edu	37	14	24800386	24800386	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADCYAP1R1	117	broad.mit.edu	37	7	31104473	31104473	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH6	130	broad.mit.edu	37	4	100140122	100140122	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH7	131	broad.mit.edu	37	4	100340162	100340162	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH7	131	broad.mit.edu	37	4	100340162	100340162	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADH7	131	broad.mit.edu	37	4	100340162	100340162	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADK	132	broad.mit.edu	37	10	76153869	76153869	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADK	132	broad.mit.edu	37	10	76153869	76153869	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADK	132	broad.mit.edu	37	10	76153869	76153869	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ADORA3	140	broad.mit.edu	37	1	112033147	112033147	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGPAT4	56895	broad.mit.edu	37	6	161560382	161560382	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AGXT	189	broad.mit.edu	37	2	241808573	241808573	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247071181	247071181	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHCTF1	25909	broad.mit.edu	37	1	247071181	247071181	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105407380	105407380	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105407380	105407380	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHNAK2	113146	broad.mit.edu	37	14	105407380	105407380	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186335082	186335082	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186335082	186335082	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AHSG	197	broad.mit.edu	37	3	186335082	186335082	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP11	11215	broad.mit.edu	37	13	42872545	42872545	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP11	11215	broad.mit.edu	37	13	42872545	42872545	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33242894	33242894	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33242894	33242894	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKAP6	9472	broad.mit.edu	37	14	33242894	33242894	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C3	8644	broad.mit.edu	37	10	5141584	5141584	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C3	8644	broad.mit.edu	37	10	5141584	5141584	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1C3	8644	broad.mit.edu	37	10	5141584	5141584	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4875556	4875556	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4875556	4875556	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AKR1E2	83592	broad.mit.edu	37	10	4875556	4875556	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74276149	74276149	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74276149	74276149	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALB	213	broad.mit.edu	37	4	74276149	74276149	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58256170	58256177	+	Frame_Shift_Del	DEL	ATAGATGG	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALDH1A2	8854	broad.mit.edu	37	15	58256170	58256177	+	Frame_Shift_Del	DEL	ATAGATGG	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALG1L2	644974	broad.mit.edu	37	3	129817105	129817105	+	3'UTR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPI	248	broad.mit.edu	37	2	233321921	233321921	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56202436	56202436	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56202436	56202436	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ALPK2	115701	broad.mit.edu	37	18	56202436	56202436	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61894041	61894041	+	Silent	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61894041	61894041	+	Silent	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANK3	288	broad.mit.edu	37	10	61894041	61894041	+	Silent	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD24	170961	broad.mit.edu	37	19	4219712	4219712	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD24	170961	broad.mit.edu	37	19	4219712	4219712	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD24	170961	broad.mit.edu	37	19	4219712	4219712	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37453892	37453892	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37482152	37482152	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37453892	37453892	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37482152	37482152	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30A	91074	broad.mit.edu	37	10	37482152	37482152	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD30B	374860	broad.mit.edu	37	18	14851670	14851670	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANKRD33	341405	broad.mit.edu	37	12	52282950	52282950	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO9	338440	broad.mit.edu	37	11	431934	431934	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO9	338440	broad.mit.edu	37	11	431934	431934	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANO9	338440	broad.mit.edu	37	11	431934	431934	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR1	84168	broad.mit.edu	37	2	69372564	69372564	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ANTXR2	118429	broad.mit.edu	37	4	80929819	80929819	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AOAH	313	broad.mit.edu	37	7	36589248	36589248	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1S1	1174	broad.mit.edu	37	7	100802303	100802304	+	Intron	INS	-	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1S1	1174	broad.mit.edu	37	7	100802303	100802304	+	Intron	INS	-	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AP1S1	1174	broad.mit.edu	37	7	100802303	100802304	+	Intron	INS	-	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26800864	26800864	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26800864	26800864	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APBB1IP	54518	broad.mit.edu	37	10	26800864	26800864	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
APOC4	346	broad.mit.edu	37	19	45448098	45448098	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115336941	115336941	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115336941	115336941	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AQPEP	206338	broad.mit.edu	37	5	115336941	115336941	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARF5	381	broad.mit.edu	37	7	127231266	127231266	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARF5	381	broad.mit.edu	37	7	127231266	127231266	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARF5	381	broad.mit.edu	37	7	127231266	127231266	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11196361	11196361	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11196361	11196361	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARHGAP6	395	broad.mit.edu	37	X	11196361	11196361	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2990067	2990067	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2990067	2990067	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ARSF	416	broad.mit.edu	37	X	2990067	2990067	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76384701	76384701	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB17	127247	broad.mit.edu	37	1	76384701	76384701	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177142481	177142481	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177142481	177142481	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASB5	140458	broad.mit.edu	37	4	177142481	177142481	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASL	435	broad.mit.edu	37	7	65557743	65557744	+	Intron	DEL	CT	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASL	435	broad.mit.edu	37	7	65557743	65557744	+	Intron	DEL	CT	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMTL	8623	broad.mit.edu	37	X	1561078	1561078	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMTL	8623	broad.mit.edu	37	X	1561078	1561078	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASMTL	8623	broad.mit.edu	37	X	1561078	1561078	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASS1	445	broad.mit.edu	37	9	133364724	133364724	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASS1	445	broad.mit.edu	37	9	133364724	133364724	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASS1	445	broad.mit.edu	37	9	133364724	133364724	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31319419	31319419	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31319419	31319419	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ASXL3	80816	broad.mit.edu	37	18	31319419	31319419	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161762216	161762216	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161762216	161762216	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATF6	22926	broad.mit.edu	37	1	161762216	161762216	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25263595	25263595	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25263595	25263595	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP12A	479	broad.mit.edu	37	13	25263595	25263595	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160085661	160085662	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP1A2	477	broad.mit.edu	37	1	160085661	160085662	+	Frame_Shift_Del	DEL	GG	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10420009	10420009	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10420009	10420009	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP2B2	491	broad.mit.edu	37	3	10420009	10420009	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55359150	55359150	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55359150	55359150	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATP8B1	5205	broad.mit.edu	37	18	55359150	55359150	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPIF1	93974	broad.mit.edu	37	1	28564412	28564412	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPIF1	93974	broad.mit.edu	37	1	28564414	28564414	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPIF1	93974	broad.mit.edu	37	1	28564412	28564412	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPIF1	93974	broad.mit.edu	37	1	28564414	28564414	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPIF1	93974	broad.mit.edu	37	1	28564412	28564412	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATPIF1	93974	broad.mit.edu	37	1	28564414	28564414	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117061553	117061553	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117486760	117486760	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117061553	117061553	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117486760	117486760	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117061553	117061553	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ATRNL1	26033	broad.mit.edu	37	10	117486760	117486760	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70231404	70231404	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70231404	70231404	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AUTS2	26053	broad.mit.edu	37	7	70231404	70231404	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI2	64343	broad.mit.edu	37	3	28381959	28381959	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI2	64343	broad.mit.edu	37	3	28381959	28381959	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
AZI2	64343	broad.mit.edu	37	3	28381959	28381959	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAGE2	85319	broad.mit.edu	37	21	11029763	11029763	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAHCC1	57597	broad.mit.edu	37	17	79419955	79419955	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143623594	143623594	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143623594	143623594	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI1	575	broad.mit.edu	37	8	143623594	143623594	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69728485	69728485	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAI3	577	broad.mit.edu	37	6	69728485	69728485	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT5	7920	broad.mit.edu	37	6	31671050	31671050	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BAT5	7920	broad.mit.edu	37	6	31671050	31671050	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548021	165548021	+	Silent	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548021	165548021	+	Silent	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BCHE	590	broad.mit.edu	37	3	165548021	165548021	+	Silent	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST1	7439	broad.mit.edu	37	11	61719197	61719197	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST1	7439	broad.mit.edu	37	11	61719197	61719197	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BEST1	7439	broad.mit.edu	37	11	61719197	61719197	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32667152	32667152	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32667152	32667152	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC6	57448	broad.mit.edu	37	2	32667152	32667152	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BIRC8	112401	broad.mit.edu	37	19	53793870	53793870	+	5'UTR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR2	659	broad.mit.edu	37	2	203378405	203378405	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR2	659	broad.mit.edu	37	2	203242410	203242410	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BMPR2	659	broad.mit.edu	37	2	203378405	203378405	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BNIPL	149428	broad.mit.edu	37	1	151016365	151016365	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRE	9577	broad.mit.edu	37	2	28521252	28521252	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRE	9577	broad.mit.edu	37	2	28521252	28521252	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BRE	9577	broad.mit.edu	37	2	28521252	28521252	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BSCL2	26580	broad.mit.edu	37	11	62458782	62458783	+	Frame_Shift_Ins	INS	-	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
BTN2A3	54718	broad.mit.edu	37	6	26428332	26428332	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118101765	118101765	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118101765	118101765	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C10orf96	374355	broad.mit.edu	37	10	118101765	118101765	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61543749	61543749	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C11orf9	745	broad.mit.edu	37	11	61543749	61543749	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf53	196500	broad.mit.edu	37	12	6804697	6804697	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf53	196500	broad.mit.edu	37	12	6804697	6804697	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf53	196500	broad.mit.edu	37	12	6804697	6804697	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97052115	97052115	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97052115	97052115	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C12orf63	374467	broad.mit.edu	37	12	97052115	97052115	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60933825	60933825	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf39	317761	broad.mit.edu	37	14	60933825	60933825	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95884079	95884079	+	3'UTR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95884079	95884079	+	3'UTR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C14orf49	161176	broad.mit.edu	37	14	95884079	95884079	+	3'UTR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922175	24922175	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922175	24922175	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C15orf2	23742	broad.mit.edu	37	15	24922175	24922175	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C17orf76	388341	broad.mit.edu	37	17	16365524	16365524	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf32	497661	broad.mit.edu	37	18	47015750	47015750	+	5'Flank	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf32	497661	broad.mit.edu	37	18	47015750	47015750	+	5'Flank	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C18orf32	497661	broad.mit.edu	37	18	47015750	47015750	+	5'Flank	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF1	114897	broad.mit.edu	37	17	77044101	77044101	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF1	114897	broad.mit.edu	37	17	77044101	77044101	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1QTNF1	114897	broad.mit.edu	37	17	77044101	77044101	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C1orf173	127254	broad.mit.edu	37	1	75107255	75107255	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35737029	35737029	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35737029	35737029	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf132	140699	broad.mit.edu	37	20	35737029	35737029	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31651554	31651554	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31651554	31651554	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C20orf185	359710	broad.mit.edu	37	20	31659079	31659079	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C21orf29	54084	broad.mit.edu	37	21	45929040	45929040	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73768561	73768561	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73768561	73768561	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2CD3	26005	broad.mit.edu	37	11	73768561	73768561	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132481456	132481456	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132508247	132508247	+	5'UTR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132481456	132481456	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132508247	132508247	+	5'UTR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf27A	29798	broad.mit.edu	37	2	132508247	132508247	+	5'UTR	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf71	388939	broad.mit.edu	37	2	29295827	29295827	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf71	388939	broad.mit.edu	37	2	29295827	29295827	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf71	388939	broad.mit.edu	37	2	29287786	29287786	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C2orf71	388939	broad.mit.edu	37	2	29295827	29295827	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf1	51300	broad.mit.edu	37	3	119222382	119222382	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf1	51300	broad.mit.edu	37	3	119222382	119222382	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C3orf1	51300	broad.mit.edu	37	3	119222382	119222382	+	Missense_Mutation	SNP	T	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71200715	71200715	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71200715	71200715	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf35	85438	broad.mit.edu	37	4	71200715	71200715	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71021700	71021700	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf40	401137	broad.mit.edu	37	4	71021700	71021700	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5981934	5981934	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5981934	5981934	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf50	389197	broad.mit.edu	37	4	5981934	5981934	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146617641	146617641	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146617641	146617641	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C4orf51	646603	broad.mit.edu	37	4	146617641	146617641	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf34	375444	broad.mit.edu	37	5	43503862	43503862	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf51	285636	broad.mit.edu	37	5	41916970	41916970	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C5orf51	285636	broad.mit.edu	37	5	41916970	41916970	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf10	10665	broad.mit.edu	37	6	32323402	32323402	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf10	10665	broad.mit.edu	37	6	32323402	32323402	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C6orf10	10665	broad.mit.edu	37	6	32323402	32323402	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf28B	221960	broad.mit.edu	37	7	6840803	6840803	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906591	120906591	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906591	120906591	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
C7orf58	79974	broad.mit.edu	37	7	120906591	120906591	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140997285	140997285	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140997285	140997285	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA1B	774	broad.mit.edu	37	9	140997285	140997285	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D3	55799	broad.mit.edu	37	3	54333361	54333361	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CACNA2D4	93589	broad.mit.edu	37	12	1974560	1974560	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44266270	44266270	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK2B	816	broad.mit.edu	37	7	44266270	44266270	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110814217	110814217	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAMK4	814	broad.mit.edu	37	5	110814217	110814217	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN2	824	broad.mit.edu	37	1	223934687	223934687	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN2	824	broad.mit.edu	37	1	223934687	223934687	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CAPN2	824	broad.mit.edu	37	1	223934687	223934687	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD16	114769	broad.mit.edu	37	11	104912157	104912157	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD16	114769	broad.mit.edu	37	11	104912157	104912157	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CARD16	114769	broad.mit.edu	37	11	104912157	104912157	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC3	22794	broad.mit.edu	37	17	38318060	38318060	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC3	22794	broad.mit.edu	37	17	38318060	38318060	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASC3	22794	broad.mit.edu	37	17	38318060	38318060	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ1	844	broad.mit.edu	37	1	160164916	160164916	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ1	844	broad.mit.edu	37	1	160164916	160164916	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CASQ1	844	broad.mit.edu	37	1	160164916	160164916	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38847195	38847195	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38847195	38847195	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CATSPERG	57828	broad.mit.edu	37	19	38847195	38847195	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBR4	84869	broad.mit.edu	37	4	169927726	169927726	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CBX3	11335	broad.mit.edu	37	7	26251418	26251418	+	Intron	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCAR1	55749	broad.mit.edu	37	10	70509285	70509286	+	Frame_Shift_Del	DEL	GA	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33457284	33457284	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33457284	33457284	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC123	84902	broad.mit.edu	37	19	33457284	33457284	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC126	90693	broad.mit.edu	37	7	23658870	23658870	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31611609	31611609	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31611609	31611609	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC129	223075	broad.mit.edu	37	7	31693476	31693476	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128452070	128452071	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128452070	128452071	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC136	64753	broad.mit.edu	37	7	128452070	128452071	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159857673	159857673	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC19	25790	broad.mit.edu	37	1	159857673	159857673	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC39	339829	broad.mit.edu	37	3	180378459	180378459	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC55	84081	broad.mit.edu	37	17	28444213	28444213	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC55	84081	broad.mit.edu	37	17	28444213	28444213	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111336973	111336973	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111336973	111336973	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC63	160762	broad.mit.edu	37	12	111336973	111336973	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC89	220388	broad.mit.edu	37	11	85396473	85396473	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCDC89	220388	broad.mit.edu	37	11	85396473	85396473	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6292833	6292833	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCKBR	887	broad.mit.edu	37	11	6292833	6292833	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNJL	79616	broad.mit.edu	37	5	159680488	159680488	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNJL	79616	broad.mit.edu	37	5	159680488	159680488	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCNJL	79616	broad.mit.edu	37	5	159680488	159680488	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT2	10576	broad.mit.edu	37	12	69986638	69986638	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT2	10576	broad.mit.edu	37	12	69986638	69986638	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072820	17072820	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072820	17072820	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CCT8L2	150160	broad.mit.edu	37	22	17072820	17072820	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD1E	913	broad.mit.edu	37	1	158323687	158323687	+	Translation_Start_Site	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD28	940	broad.mit.edu	37	2	204571325	204571325	+	5'UTR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135741330	135741330	+	Missense_Mutation	SNP	G	T	T	rs11575982	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CD40LG	959	broad.mit.edu	37	X	135741330	135741330	+	Missense_Mutation	SNP	G	T	T	rs11575982	byFrequency	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDA	978	broad.mit.edu	37	1	20915820	20915820	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDA	978	broad.mit.edu	37	1	20915820	20915820	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH20	28316	broad.mit.edu	37	18	59217422	59217422	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25568698	25568698	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25583177	25583177	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25568698	25568698	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25583177	25583177	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH2	1000	broad.mit.edu	37	18	25583177	25583177	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31318142	31318142	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31318142	31318142	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH6	1004	broad.mit.edu	37	5	31318142	31318142	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63527052	63527052	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63527052	63527052	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH7	1005	broad.mit.edu	37	18	63527052	63527052	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26903678	26903678	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26903678	26903678	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDH9	1007	broad.mit.edu	37	5	26903678	26903678	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR4	389118	broad.mit.edu	37	3	49836271	49836271	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR4	389118	broad.mit.edu	37	3	49836271	49836271	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDHR4	389118	broad.mit.edu	37	3	49836271	49836271	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDO1	1036	broad.mit.edu	37	5	115149076	115149076	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CDO1	1036	broad.mit.edu	37	5	115149076	115149076	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR5	27440	broad.mit.edu	37	22	17630516	17630516	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR5	27440	broad.mit.edu	37	22	17630516	17630516	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CECR5	27440	broad.mit.edu	37	22	17630516	17630516	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25459320	25459320	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CENPJ	55835	broad.mit.edu	37	13	25459320	25459320	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196683021	196683021	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196683123	196683123	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196683021	196683021	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196683123	196683123	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196697463	196697463	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196683021	196683021	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CFH	3075	broad.mit.edu	37	1	196683123	196683123	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD4	131474	broad.mit.edu	37	3	14154566	14154566	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD4	131474	broad.mit.edu	37	3	14154566	14154566	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHCHD4	131474	broad.mit.edu	37	3	14154566	14154566	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203192633	203192633	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203192633	203192633	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CHIT1	1118	broad.mit.edu	37	1	203192633	203192633	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CKAP5	9793	broad.mit.edu	37	11	46837632	46837633	+	Intron	DEL	CA	-	-	rs59649961		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12A	160364	broad.mit.edu	37	12	10137385	10137385	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC12A	160364	broad.mit.edu	37	12	10137385	10137385	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC1A	51267	broad.mit.edu	37	12	10226002	10226002	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC1A	51267	broad.mit.edu	37	12	10226002	10226002	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC1A	51267	broad.mit.edu	37	12	10226002	10226002	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLEC4C	170482	broad.mit.edu	37	12	7890257	7890257	+	Intron	SNP	T	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2P	1197	broad.mit.edu	37	7	23624863	23624863	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2P	1197	broad.mit.edu	37	7	23624863	23624863	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLK2P	1197	broad.mit.edu	37	7	23624863	23624863	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1L	81037	broad.mit.edu	37	5	1325738	1325738	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLPTM1L	81037	broad.mit.edu	37	5	1325738	1325738	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN3	119467	broad.mit.edu	37	10	129681939	129681939	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLRN3	119467	broad.mit.edu	37	10	129681939	129681939	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSPN	63967	broad.mit.edu	37	1	36228163	36228163	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSPN	63967	broad.mit.edu	37	1	36228163	36228163	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7293797	7293797	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7293797	7293797	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CLSTN3	9746	broad.mit.edu	37	12	7293797	7293797	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41365318	41365318	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41365318	41365318	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN1	1272	broad.mit.edu	37	12	41365318	41365318	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100095350	100095350	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100208113	100208113	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100095350	100095350	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100208113	100208113	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100095350	100095350	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CNTN5	53942	broad.mit.edu	37	11	100208113	100208113	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103404607	103404607	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103444752	103444752	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103404607	103404607	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103444752	103444752	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103404607	103404607	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL11A1	1301	broad.mit.edu	37	1	103444752	103444752	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101817203	101817203	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL15A1	1306	broad.mit.edu	37	9	101817203	101817203	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL21A1	81578	broad.mit.edu	37	6	55926527	55926527	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139688869	139688869	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139734263	139734263	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL22A1	169044	broad.mit.edu	37	8	139749775	139749775	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130174526	130174526	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130174526	130174526	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL29A1	256076	broad.mit.edu	37	3	130174526	130174526	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48387876	48387876	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48387876	48387876	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL2A1	1280	broad.mit.edu	37	12	48387876	48387876	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL3A1	1281	broad.mit.edu	37	2	189849653	189849653	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL6A6	131873	broad.mit.edu	37	3	130293212	130293212	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48618353	48618353	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48618353	48618353	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COL7A1	1294	broad.mit.edu	37	3	48618353	48618353	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD6	170622	broad.mit.edu	37	13	76101882	76101882	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD6	170622	broad.mit.edu	37	13	76101882	76101882	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COMMD6	170622	broad.mit.edu	37	13	76112127	76112127	+	5'Flank	DEL	A	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPE	11316	broad.mit.edu	37	19	19023783	19023783	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COPZ1	22818	broad.mit.edu	37	12	54735965	54735965	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6B1	1340	broad.mit.edu	37	19	36145541	36145541	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6B1	1340	broad.mit.edu	37	19	36145541	36145541	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6B1	1340	broad.mit.edu	37	19	36145541	36145541	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6B2	125965	broad.mit.edu	37	19	55865866	55865866	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6B2	125965	broad.mit.edu	37	19	55865866	55865866	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
COX6B2	125965	broad.mit.edu	37	19	55865866	55865866	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148563203	148563203	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148563203	148563203	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPB1	1360	broad.mit.edu	37	3	148563203	148563203	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101808487	101808487	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101808487	101808487	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPN1	1369	broad.mit.edu	37	10	101808487	101808487	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF6	11052	broad.mit.edu	37	12	69656388	69656388	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CPSF6	11052	broad.mit.edu	37	12	69656388	69656388	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRAMP1L	57585	broad.mit.edu	37	16	1682398	1682398	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197396952	197396952	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197396952	197396952	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRB1	23418	broad.mit.edu	37	1	197396952	197396952	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRHR1	1394	broad.mit.edu	37	17	43893771	43893776	+	Intron	DEL	CTGCCT	-	-	rs10585044		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRMP1	1400	broad.mit.edu	37	4	5838673	5838673	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAP	10491	broad.mit.edu	37	3	33175607	33175607	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAP	10491	broad.mit.edu	37	3	33175607	33175607	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CRTAP	10491	broad.mit.edu	37	3	33175607	33175607	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2876097	2876097	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2876097	2876097	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	2876097	2876097	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD1	64478	broad.mit.edu	37	8	3072046	3072046	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34006354	34006354	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34006354	34006354	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD2	114784	broad.mit.edu	37	1	34006354	34006354	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113299139	113299139	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113299268	113299268	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113392721	113392721	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113299139	113299139	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113299268	113299268	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113392721	113392721	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113299268	113299268	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CSMD3	114788	broad.mit.edu	37	8	113392721	113392721	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77488804	77488804	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77488804	77488804	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTDP1	9150	broad.mit.edu	37	18	77488804	77488804	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67726505	67726505	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67726505	67726505	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNNA3	29119	broad.mit.edu	37	10	67726505	67726505	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732420	11732420	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732420	11732420	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTNND2	1501	broad.mit.edu	37	5	11732420	11732420	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16638217	16638217	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTPS2	56474	broad.mit.edu	37	X	16638217	16638217	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2NL	55917	broad.mit.edu	37	1	112999276	112999276	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2NL	55917	broad.mit.edu	37	1	112999276	112999276	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CTTNBP2NL	55917	broad.mit.edu	37	1	112999276	112999276	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP3	440224	broad.mit.edu	37	18	14479211	14479211	+	RNA	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXADRP3	440224	broad.mit.edu	37	18	14479211	14479211	+	RNA	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35974046	35974046	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35937818	35937818	+	5'Flank	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35974046	35974046	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35937818	35937818	+	5'Flank	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CXorf22	170063	broad.mit.edu	37	X	35974046	35974046	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156731349	156731349	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156731349	156731349	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYFIP2	26999	broad.mit.edu	37	5	156731349	156731349	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2A7	1549	broad.mit.edu	37	19	41450538	41450538	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C18	1562	broad.mit.edu	37	10	96480183	96480184	+	Frame_Shift_Ins	INS	-	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
CYP2C18	1562	broad.mit.edu	37	10	96480183	96480184	+	Frame_Shift_Ins	INS	-	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DAOA	267012	broad.mit.edu	37	13	106118506	106118506	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88886197	88886197	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88886197	88886197	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4L2	138009	broad.mit.edu	37	8	88886197	88886197	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4	26094	broad.mit.edu	37	14	73422416	73422416	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4	26094	broad.mit.edu	37	14	73422416	73422416	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCAF4	26094	broad.mit.edu	37	14	73422416	73422416	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6661905	6661905	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6661905	6661905	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DCHS1	8642	broad.mit.edu	37	11	6661905	6661905	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61077162	61077162	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDB1	1642	broad.mit.edu	37	11	61077162	61077162	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDIT3	1649	broad.mit.edu	37	12	57910683	57910683	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDIT3	1649	broad.mit.edu	37	12	57910683	57910683	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDIT3	1649	broad.mit.edu	37	12	57910683	57910683	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX42	11325	broad.mit.edu	37	17	61886919	61886919	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX42	11325	broad.mit.edu	37	17	61886919	61886919	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DDX42	11325	broad.mit.edu	37	17	61886919	61886919	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DECR1	1666	broad.mit.edu	37	8	91057321	91057321	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DECR1	1666	broad.mit.edu	37	8	91057321	91057321	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DECR1	1666	broad.mit.edu	37	8	91057321	91057321	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DGKK	139189	broad.mit.edu	37	X	50121561	50121561	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHFRL1	200895	broad.mit.edu	37	3	93780055	93780055	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS11	79154	broad.mit.edu	37	17	34951468	34951468	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS11	79154	broad.mit.edu	37	17	34951468	34951468	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHRS11	79154	broad.mit.edu	37	17	34951468	34951468	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX29	54505	broad.mit.edu	37	5	54572988	54572988	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX29	54505	broad.mit.edu	37	5	54572988	54572988	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DHX29	54505	broad.mit.edu	37	5	54572988	54572988	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60490351	60490351	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60490351	60490351	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIAPH3	81624	broad.mit.edu	37	13	60490351	60490351	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80672104	80672104	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80672104	80672104	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DIO2	1734	broad.mit.edu	37	14	80672104	80672104	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DKFZp686A1627	266695	broad.mit.edu	37	13	19689431	19689431	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83195417	83195417	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLG2	1740	broad.mit.edu	37	11	83195417	83195417	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DLGAP2	9228	broad.mit.edu	37	8	1497137	1497137	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88584230	88584230	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88584230	88584230	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DMP1	1758	broad.mit.edu	37	4	88584230	88584230	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH17	8632	broad.mit.edu	37	17	76430021	76430024	+	Intron	DEL	GGAG	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH1	25981	broad.mit.edu	37	3	52361820	52361820	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20976235	20976235	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20976235	20976235	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH3	55567	broad.mit.edu	37	16	20976235	20976235	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13820645	13820645	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13820645	13820645	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13820645	13820645	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH5	1767	broad.mit.edu	37	5	13839712	13839712	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38791356	38791356	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH8	1769	broad.mit.edu	37	6	38791356	38791356	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11513660	11513660	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11784402	11784402	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11513660	11513660	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DNAH9	1770	broad.mit.edu	37	17	11784402	11784402	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25220537	25220537	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25220537	25220537	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DOCK5	80005	broad.mit.edu	37	8	25220537	25220537	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPEP1	1800	broad.mit.edu	37	16	89702265	89702266	+	Intron	INS	-	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98012146	98012146	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	97547759	97547759	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYD	1806	broad.mit.edu	37	1	98012146	98012146	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27150120	27150120	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27150120	27150120	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DPYSL5	56896	broad.mit.edu	37	2	27150120	27150120	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113283629	113283630	+	Intron	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DRD2	1813	broad.mit.edu	37	11	113283629	113283630	+	Intron	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56510624	56510624	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56516040	56516041	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56510624	56510624	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56516040	56516041	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56510624	56510624	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DST	667	broad.mit.edu	37	6	56516040	56516041	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32391882	32391882	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32391882	32391882	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DTNA	1837	broad.mit.edu	37	18	32391882	32391882	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DUSP5P	574029	broad.mit.edu	37	1	228786745	228786745	+	3'UTR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46858254	46858254	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46858254	46858254	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYM	54808	broad.mit.edu	37	18	46858254	46858254	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103229014	103229014	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103229014	103229014	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DYNC2H1	79659	broad.mit.edu	37	11	103229014	103229014	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137816623	137816623	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137816623	137816623	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
DZIP1L	199221	broad.mit.edu	37	3	137816623	137816623	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F3	1871	broad.mit.edu	37	6	20482890	20482890	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F3	1871	broad.mit.edu	37	6	20482890	20482890	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F3	1871	broad.mit.edu	37	6	20482890	20482890	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
E2F3	1871	broad.mit.edu	37	6	20488470	20488470	+	Missense_Mutation	SNP	G	A	A	rs147333935	byFrequency	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25702281	25702281	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25898597	25898597	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25702281	25702281	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25898597	25898597	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25702281	25702281	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EBF2	64641	broad.mit.edu	37	8	25898597	25898597	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	184001501	184001501	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ECE2	9718	broad.mit.edu	37	3	184001501	184001501	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDAR	10913	broad.mit.edu	37	2	109547217	109547217	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EDAR	10913	broad.mit.edu	37	2	109547217	109547217	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1	1915	broad.mit.edu	37	6	74229134	74229136	+	In_Frame_Del	DEL	TGC	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1	1915	broad.mit.edu	37	6	74229134	74229136	+	In_Frame_Del	DEL	TGC	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EEF1A1	1915	broad.mit.edu	37	6	74229134	74229136	+	In_Frame_Del	DEL	TGC	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42940928	42940928	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42940928	42940928	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EFTUD2	9343	broad.mit.edu	37	17	42940928	42940928	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38418193	38418194	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38418193	38418194	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGFLAM	133584	broad.mit.edu	37	5	38418193	38418194	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34395012	34395012	+	3'UTR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34395012	34395012	+	3'UTR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EGLN3	112399	broad.mit.edu	37	14	34395012	34395012	+	3'UTR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3F	8665	broad.mit.edu	37	11	8008774	8008774	+	5'Flank	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3F	8665	broad.mit.edu	37	11	8008774	8008774	+	5'Flank	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EIF3F	8665	broad.mit.edu	37	11	8008774	8008774	+	5'Flank	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37264644	37264644	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37264644	37264644	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37298871	37298872	+	Missense_Mutation	DNP	GG	TC	TC			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMO1	9844	broad.mit.edu	37	7	37264644	37264644	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107514602	107514602	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107514602	107514602	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELMOD1	55531	broad.mit.edu	37	11	107514602	107514602	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79383281	79383281	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ELTD1	64123	broad.mit.edu	37	1	79383281	79383281	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14884566	14884566	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EMR2	30817	broad.mit.edu	37	19	14884566	14884566	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENG	2022	broad.mit.edu	37	9	130588868	130588868	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENG	2022	broad.mit.edu	37	9	130588868	130588868	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENG	2022	broad.mit.edu	37	9	130588868	130588868	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111469537	111469537	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111469537	111469537	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ENPEP	2028	broad.mit.edu	37	4	111469537	111469537	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132446343	132446343	+	Missense_Mutation	SNP	G	C	C	rs141437491		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132446343	132446343	+	Missense_Mutation	SNP	G	C	C	rs141437491		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EP400	57634	broad.mit.edu	37	12	132446343	132446343	+	Missense_Mutation	SNP	G	C	C	rs141437491		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111975825	111975825	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111975825	111975825	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPB41L4B	54566	broad.mit.edu	37	9	111975825	111975825	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC1	80314	broad.mit.edu	37	10	32582490	32582490	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC1	80314	broad.mit.edu	37	10	32582490	32582490	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPC1	80314	broad.mit.edu	37	10	32582490	32582490	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143096426	143096426	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA1	2041	broad.mit.edu	37	7	143096426	143096426	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66467292	66467292	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66467292	66467292	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA5	2044	broad.mit.edu	37	4	66467292	66467292	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22903323	22903323	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPHA8	2046	broad.mit.edu	37	1	22903323	22903323	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144942384	144942384	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EPPK1	83481	broad.mit.edu	37	8	144942384	144942384	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC2	51290	broad.mit.edu	37	12	29509476	29509476	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERGIC2	51290	broad.mit.edu	37	12	29509476	29509476	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ERO1LB	56605	broad.mit.edu	37	1	236385171	236385171	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216741281	216741281	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216741281	216741281	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ESRRG	2104	broad.mit.edu	37	1	216741281	216741281	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI2A	2123	broad.mit.edu	37	17	29645450	29645450	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI2A	2123	broad.mit.edu	37	17	29645450	29645450	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EVI2A	2123	broad.mit.edu	37	17	29645450	29645450	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	549257	549257	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	553806	553806	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	549257	549257	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	553806	553806	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	549257	549257	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
EXOC2	55770	broad.mit.edu	37	6	553806	553806	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6267178	6267178	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6267178	6267178	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13A1	2162	broad.mit.edu	37	6	6267178	6267178	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197024971	197024971	+	Missense_Mutation	SNP	C	A	A	rs144134146	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197026086	197026086	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197024971	197024971	+	Missense_Mutation	SNP	C	A	A	rs144134146	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197026086	197026086	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
F13B	2165	broad.mit.edu	37	1	197024971	197024971	+	Missense_Mutation	SNP	C	A	A	rs144134146	byFrequency	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP12	646486	broad.mit.edu	37	8	82443460	82443460	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP12	646486	broad.mit.edu	37	8	82443460	82443460	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FABP12	646486	broad.mit.edu	37	8	82443460	82443460	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131521360	131521360	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM123C	205147	broad.mit.edu	37	2	131521360	131521360	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124A	220108	broad.mit.edu	37	13	51855350	51855350	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124A	220108	broad.mit.edu	37	13	51855350	51855350	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM124A	220108	broad.mit.edu	37	13	51855350	51855350	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139145140	139145140	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139151256	139151256	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139323319	139323319	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139145140	139145140	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139151256	139151256	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139145140	139145140	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM135B	51059	broad.mit.edu	37	8	139151256	139151256	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61023983	61023983	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61023983	61023983	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM13C	220965	broad.mit.edu	37	10	61023983	61023983	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108518829	108518829	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108518829	108518829	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM155A	728215	broad.mit.edu	37	13	108518829	108518829	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118968566	118968566	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118968566	118968566	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM170A	340069	broad.mit.edu	37	5	118968566	118968566	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM171B	165215	broad.mit.edu	37	2	187618832	187618832	+	Intron	SNP	C	T	T	rs73035680	by1000genomes	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM49A	81553	broad.mit.edu	37	2	16743450	16743450	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM50B	26240	broad.mit.edu	37	6	3849964	3849964	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177242620	177242620	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177242620	177242620	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM5B	57795	broad.mit.edu	37	1	177242620	177242620	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67573489	67573489	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67573489	67573489	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65A	79567	broad.mit.edu	37	16	67573489	67573489	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM65B	9750	broad.mit.edu	37	6	25024531	25024531	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90536968	90536968	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90536968	90536968	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM75C1	441452	broad.mit.edu	37	9	90536968	90536968	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124786511	124786511	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM91A1	157769	broad.mit.edu	37	8	124786511	124786511	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33810265	33810265	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33810355	33810355	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33810265	33810265	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33810355	33810355	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33810265	33810265	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAM98A	25940	broad.mit.edu	37	2	33810355	33810355	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCB	2187	broad.mit.edu	37	X	14883648	14883648	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCB	2187	broad.mit.edu	37	X	14883648	14883648	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCB	2187	broad.mit.edu	37	X	14883648	14883648	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FANCD2	2177	broad.mit.edu	37	3	10088407	10088410	+	Splice_Site	DEL	AGTA	-	-	rs146316187		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAR2	55711	broad.mit.edu	37	12	29485709	29485709	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150948412	150948412	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150923125	150923125	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150948412	150948412	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150923125	150923125	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT2	2196	broad.mit.edu	37	5	150948412	150948412	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531657	92531657	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92534270	92534270	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531657	92531657	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92534270	92534270	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92531657	92531657	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT3	120114	broad.mit.edu	37	11	92534270	92534270	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126242381	126242381	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126242381	126242381	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FAT4	79633	broad.mit.edu	37	4	126242381	126242381	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13679148	13679148	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13679148	13679148	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBLN2	2199	broad.mit.edu	37	3	13679148	13679148	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127686687	127686687	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127686687	127686687	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN2	2201	broad.mit.edu	37	5	127686687	127686687	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8183790	8183790	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8183790	8183790	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBN3	84467	broad.mit.edu	37	19	8183790	8183790	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117604777	117604777	+	Silent	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117604777	117604777	+	Silent	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FBXO21	23014	broad.mit.edu	37	12	117604777	117604777	+	Silent	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCGBP	8857	broad.mit.edu	37	19	40368029	40368029	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157737060	157737060	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157737060	157737060	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL2	79368	broad.mit.edu	37	1	157737060	157737060	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FCRL3	115352	broad.mit.edu	37	1	157653173	157653173	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FER1L6	654463	broad.mit.edu	37	8	125083827	125083827	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95602937	95602937	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95602937	95602937	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGD6	55785	broad.mit.edu	37	12	95602937	95602937	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF10	2255	broad.mit.edu	37	5	44305247	44305247	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF10	2255	broad.mit.edu	37	5	44305247	44305247	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FGF10	2255	broad.mit.edu	37	5	44305247	44305247	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL2	2274	broad.mit.edu	37	2	106015303	106015303	+	5'Flank	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHL2	2274	broad.mit.edu	37	2	106015303	106015303	+	5'Flank	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67272056	67272056	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67272056	67272056	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FHOD1	29109	broad.mit.edu	37	16	67272056	67272056	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110037964	110037964	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FIG4	9896	broad.mit.edu	37	6	110037964	110037964	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323916	152323916	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG2	388698	broad.mit.edu	37	1	152323916	152323916	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLG	2312	broad.mit.edu	37	1	152286914	152286915	+	Frame_Shift_Ins	INS	-	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109190342	109190342	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109190342	109190342	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ25363	401082	broad.mit.edu	37	3	109190342	109190342	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLJ40330	645784	broad.mit.edu	37	2	89082293	89082294	+	Intron	INS	-	ATTT	ATTT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128486498	128486498	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128487758	128487758	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128486498	128486498	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128487758	128487758	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128486498	128486498	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLNC	2318	broad.mit.edu	37	7	128487758	128487758	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28893606	28893606	+	Missense_Mutation	SNP	G	T	T	rs116034414	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28893606	28893606	+	Missense_Mutation	SNP	G	T	T	rs116034414	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FLT1	2321	broad.mit.edu	37	13	28893606	28893606	+	Missense_Mutation	SNP	G	T	T	rs116034414	by1000genomes	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171227174	171227174	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171227174	171227174	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FMO1	2326	broad.mit.edu	37	1	171227174	171227174	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRAS1	80144	broad.mit.edu	37	4	79296926	79296927	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRG1	2483	broad.mit.edu	37	4	190876250	190876250	+	Missense_Mutation	SNP	G	T	T	rs146824996	by1000genomes	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13782541	13782541	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13782541	13782541	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMD4A	55691	broad.mit.edu	37	10	13782541	13782541	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37739992	37739992	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37739992	37739992	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FRMPD1	22844	broad.mit.edu	37	9	37739992	37739992	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN1	6624	broad.mit.edu	37	7	5644853	5644853	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FSCN1	6624	broad.mit.edu	37	7	5644853	5644853	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	54145842	54145842	+	3'UTR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	54145867	54145867	+	3'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	54145842	54145842	+	3'UTR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	54145867	54145867	+	3'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	54145842	54145842	+	3'UTR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FTO	79068	broad.mit.edu	37	16	54145867	54145867	+	3'UTR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78422351	78422351	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78422351	78422351	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
FUBP1	8880	broad.mit.edu	37	1	78422351	78422351	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46312311	46312311	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46312311	46312311	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRA2	2555	broad.mit.edu	37	4	46312311	46312311	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GABRG2	2566	broad.mit.edu	37	5	161576140	161576140	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT10	55568	broad.mit.edu	37	5	153792356	153792356	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT10	55568	broad.mit.edu	37	5	153792356	153792356	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT10	55568	broad.mit.edu	37	5	153792356	153792356	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNT2	2590	broad.mit.edu	37	1	230391232	230391232	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16252591	16252591	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16252591	16252591	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GALNTL2	117248	broad.mit.edu	37	3	16252591	16252591	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34073054	34073054	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34073054	34073054	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GAS2L2	246176	broad.mit.edu	37	17	34073054	34073054	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA4	2626	broad.mit.edu	37	8	11607724	11607724	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA4	2626	broad.mit.edu	37	8	11607724	11607724	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GATA4	2626	broad.mit.edu	37	8	11607724	11607724	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBAS	2631	broad.mit.edu	37	7	56065274	56065274	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBAS	2631	broad.mit.edu	37	7	56065274	56065274	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89732314	89732314	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GBP5	115362	broad.mit.edu	37	1	89732314	89732314	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120614022	120614022	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120614022	120614022	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GCN1L1	10985	broad.mit.edu	37	12	120614022	120614022	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48413769	48413769	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48413769	48413769	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF2	2658	broad.mit.edu	37	10	48413769	48413769	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF5	8200	broad.mit.edu	37	20	33971760	33971760	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF5	8200	broad.mit.edu	37	20	33971760	33971760	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GDF5	8200	broad.mit.edu	37	20	33971760	33971760	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42988648	42988648	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42989121	42989121	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42988648	42988648	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42989121	42989121	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42988648	42988648	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GFAP	2670	broad.mit.edu	37	17	42989121	42989121	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6592236	6592236	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6592236	6592236	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLDC	2731	broad.mit.edu	37	9	6592236	6592236	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLMN	11146	broad.mit.edu	37	1	92729162	92729162	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLMN	11146	broad.mit.edu	37	1	92729162	92729162	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLMN	11146	broad.mit.edu	37	1	92729162	92729162	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9757860	9757860	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9757860	9757860	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GLP2R	9340	broad.mit.edu	37	17	9757860	9757860	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMFG	9535	broad.mit.edu	37	19	39819649	39819649	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMFG	9535	broad.mit.edu	37	19	39819649	39819649	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GMFG	9535	broad.mit.edu	37	19	39819649	39819649	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB1L	54584	broad.mit.edu	37	22	19808292	19808292	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB1L	54584	broad.mit.edu	37	22	19808292	19808292	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNB1L	54584	broad.mit.edu	37	22	19808292	19808292	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNRHR	2798	broad.mit.edu	37	4	68619638	68619638	+	Missense_Mutation	SNP	C	T	T	rs104893842		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNRHR	2798	broad.mit.edu	37	4	68619638	68619638	+	Missense_Mutation	SNP	C	T	T	rs104893842		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GNRHR	2798	broad.mit.edu	37	4	68619638	68619638	+	Missense_Mutation	SNP	C	T	T	rs104893842		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR1	9527	broad.mit.edu	37	17	28838063	28838063	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOSR1	9527	broad.mit.edu	37	17	28838063	28838063	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1L1	137362	broad.mit.edu	37	8	37794885	37794885	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1L1	137362	broad.mit.edu	37	8	37794885	37794885	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GOT1L1	137362	broad.mit.edu	37	8	37794885	37794885	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH2	55105	broad.mit.edu	37	1	217784540	217784540	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPATCH2	55105	broad.mit.edu	37	1	217784540	217784540	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135431732	135431732	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135431732	135431732	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR112	139378	broad.mit.edu	37	X	135431732	135431732	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46826786	46826786	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46826786	46826786	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR116	221395	broad.mit.edu	37	6	46826786	46826786	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100373932	100373932	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100387664	100387664	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100373932	100373932	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100387664	100387664	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR128	84873	broad.mit.edu	37	3	100373932	100373932	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR12	2835	broad.mit.edu	37	13	27333071	27333071	+	Silent	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR12	2835	broad.mit.edu	37	13	27333071	27333071	+	Silent	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR12	2835	broad.mit.edu	37	13	27333071	27333071	+	Silent	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR151	134391	broad.mit.edu	37	5	145895383	145895383	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR151	134391	broad.mit.edu	37	5	145895383	145895383	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPR151	134391	broad.mit.edu	37	5	145895383	145895383	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5B	51704	broad.mit.edu	37	16	19883304	19883304	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5B	51704	broad.mit.edu	37	16	19883304	19883304	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GPRC5B	51704	broad.mit.edu	37	16	19883304	19883304	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11765479	11765479	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11765479	11765479	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GREB1	9687	broad.mit.edu	37	2	11765479	11765479	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158281395	158281395	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158281395	158281395	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIA2	2891	broad.mit.edu	37	4	158281395	158281395	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87407105	87407105	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87407105	87407105	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID1	2894	broad.mit.edu	37	10	87407105	87407105	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94693324	94693324	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94693324	94693324	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRID2	2895	broad.mit.edu	37	4	94693324	94693324	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37346222	37346222	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIK3	2899	broad.mit.edu	37	1	37346222	37346222	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104432903	104432903	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104432903	104432903	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRIN3A	116443	broad.mit.edu	37	9	104432903	104432903	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47422455	47422455	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47422455	47422455	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRLF1	2909	broad.mit.edu	37	19	47422455	47422455	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88337916	88337916	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88337916	88337916	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GRM5	2915	broad.mit.edu	37	11	88337916	88337916	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSN	2934	broad.mit.edu	37	9	124088797	124088797	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSN	2934	broad.mit.edu	37	9	124088797	124088797	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSN	2934	broad.mit.edu	37	9	124088797	124088797	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52659104	52659104	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52659104	52659104	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA1	2938	broad.mit.edu	37	6	52659104	52659104	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52702270	52702270	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52702270	52702270	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GSTA5	221357	broad.mit.edu	37	6	52702270	52702270	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108627059	108627059	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108627059	108627059	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCA1C	9626	broad.mit.edu	37	3	108627059	108627059	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108638599	108638599	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108652325	108652325	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108708207	108708207	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108638599	108638599	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108652325	108652325	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108708207	108708207	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GUCY2F	2986	broad.mit.edu	37	X	108638599	108638599	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMB	3002	broad.mit.edu	37	14	25100902	25100902	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
GZMB	3002	broad.mit.edu	37	14	25100902	25100902	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAND1	9421	broad.mit.edu	37	5	153857373	153857373	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS7	55559	broad.mit.edu	37	X	152721086	152721086	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS7	55559	broad.mit.edu	37	X	152721086	152721086	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAUS7	55559	broad.mit.edu	37	X	152721086	152721086	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR2	84868	broad.mit.edu	37	5	156533775	156533775	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HAVCR2	84868	broad.mit.edu	37	5	156533775	156533775	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18688221	18688221	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18688221	18688221	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HDAC9	9734	broad.mit.edu	37	7	18688221	18688221	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41033053	41033053	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41033053	41033053	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41033053	41033053	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HEATR7B2	133558	broad.mit.edu	37	5	41049236	41049236	+	Silent	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81335640	81335640	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HGF	3082	broad.mit.edu	37	7	81335640	81335640	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HHIPL1	84439	broad.mit.edu	37	14	100123116	100123118	+	Intron	DEL	AAG	-	-	rs35577018		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIATL1	84641	broad.mit.edu	37	9	97218682	97218682	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIATL1	84641	broad.mit.edu	37	9	97218682	97218682	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIATL1	84641	broad.mit.edu	37	9	97218682	97218682	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIBADH	11112	broad.mit.edu	37	7	27578094	27578094	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4D	8360	broad.mit.edu	37	6	26189412	26189412	+	5'Flank	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HIST1H4D	8360	broad.mit.edu	37	6	26189412	26189412	+	5'Flank	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HLA-DQA2	3118	broad.mit.edu	37	6	32713511	32713512	+	Intron	INS	-	AGA	AGA	rs113435733		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185956655	185956656	+	Frame_Shift_Ins	INS	-	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185956655	185956656	+	Frame_Shift_Ins	INS	-	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMCN1	83872	broad.mit.edu	37	1	185956655	185956656	+	Frame_Shift_Ins	INS	-	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGN1	3150	broad.mit.edu	37	21	40720300	40720300	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGN1	3150	broad.mit.edu	37	21	40720300	40720300	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HMGN1	3150	broad.mit.edu	37	21	40720300	40720300	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43052640	43052640	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43052640	43052640	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HNF4A	3172	broad.mit.edu	37	20	43052640	43052640	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOOK3	84376	broad.mit.edu	37	8	42761160	42761160	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB8	3218	broad.mit.edu	37	17	46690585	46690585	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB8	3218	broad.mit.edu	37	17	46690585	46690585	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HOXB8	3218	broad.mit.edu	37	17	46690585	46690585	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B13	345275	broad.mit.edu	37	4	88236551	88236551	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B13	345275	broad.mit.edu	37	4	88236551	88236551	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118850560	118850560	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSD17B4	3295	broad.mit.edu	37	5	118850560	118850560	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148839601	148839601	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148839601	148839601	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSFX2	100130086	broad.mit.edu	37	X	148839601	148839601	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118434156	118434156	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118436037	118436037	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118434156	118434156	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118436037	118436037	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA12A	259217	broad.mit.edu	37	10	118436037	118436037	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA1L	3305	broad.mit.edu	37	6	31779674	31779674	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA1L	3305	broad.mit.edu	37	6	31779674	31779674	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA1L	3305	broad.mit.edu	37	6	31779674	31779674	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA6	3310	broad.mit.edu	37	1	161496061	161496061	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA6	3310	broad.mit.edu	37	1	161496061	161496061	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPA6	3310	broad.mit.edu	37	1	161496061	161496061	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22181571	22181571	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HSPG2	3339	broad.mit.edu	37	1	22181571	22181571	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63257347	63257347	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63257347	63257347	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HTR1A	3350	broad.mit.edu	37	5	63257347	63257347	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUS1B	135458	broad.mit.edu	37	6	656317	656317	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUS1B	135458	broad.mit.edu	37	6	656317	656317	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUS1B	135458	broad.mit.edu	37	6	656317	656317	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53608003	53608003	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
HUWE1	10075	broad.mit.edu	37	X	53608003	53608003	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA7	3444	broad.mit.edu	37	9	21202067	21202067	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA7	3444	broad.mit.edu	37	9	21202067	21202067	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFNA7	3444	broad.mit.edu	37	9	21202067	21202067	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD2	7866	broad.mit.edu	37	3	50326124	50326124	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD2	7866	broad.mit.edu	37	3	50326124	50326124	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IFRD2	7866	broad.mit.edu	37	3	50326124	50326124	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99473428	99473428	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGF1R	3480	broad.mit.edu	37	15	99473428	99473428	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118624531	118624531	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118624531	118624531	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IGSF11	152404	broad.mit.edu	37	3	118624531	118624531	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67833708	67833708	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67833708	67833708	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL12RB2	3595	broad.mit.edu	37	1	67833708	67833708	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17F	112744	broad.mit.edu	37	6	52102076	52102076	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL17F	112744	broad.mit.edu	37	6	52102076	52102076	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104511933	104511933	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104511933	104511933	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL1RAPL2	26280	broad.mit.edu	37	X	104511933	104511933	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL23R	149233	broad.mit.edu	37	1	67648489	67648489	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL23R	149233	broad.mit.edu	37	1	67648489	67648489	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL23R	149233	broad.mit.edu	37	1	67648489	67648489	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL24	11009	broad.mit.edu	37	1	207072918	207072918	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL24	11009	broad.mit.edu	37	1	207072918	207072918	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL24	11009	broad.mit.edu	37	1	207072918	207072918	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28B	282617	broad.mit.edu	37	19	39734774	39734774	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28B	282617	broad.mit.edu	37	19	39734774	39734774	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL28B	282617	broad.mit.edu	37	19	39734774	39734774	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37533689	37533689	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37533689	37533689	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL2RB	3560	broad.mit.edu	37	22	37533689	37533689	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1460672	1460672	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1475004	1475004	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1460672	1460672	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1475004	1475004	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IL3RA	3563	broad.mit.edu	37	X	1460672	1460672	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBB	3625	broad.mit.edu	37	2	121107308	121107308	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBB	3625	broad.mit.edu	37	2	121107308	121107308	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INHBB	3625	broad.mit.edu	37	2	121107308	121107308	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234112954	234112954	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
INPP5D	3635	broad.mit.edu	37	2	234112954	234112954	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQGAP1	8826	broad.mit.edu	37	15	90996394	90996394	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123105065	123105065	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123105065	123105065	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IQUB	154865	broad.mit.edu	37	7	123105065	123105065	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGC	56269	broad.mit.edu	37	19	44223909	44223909	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRGC	56269	broad.mit.edu	37	19	44223909	44223909	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX4	50805	broad.mit.edu	37	5	1878835	1878835	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
IRX4	50805	broad.mit.edu	37	5	1878835	1878835	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISOC1	51015	broad.mit.edu	37	5	128441222	128441222	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISYNA1	51477	broad.mit.edu	37	19	18546722	18546722	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISYNA1	51477	broad.mit.edu	37	19	18546722	18546722	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ISYNA1	51477	broad.mit.edu	37	19	18546722	18546722	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52201563	52201563	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52201563	52201563	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA1	3672	broad.mit.edu	37	5	52201563	52201563	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54797398	54797398	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54797398	54797398	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGA5	3678	broad.mit.edu	37	12	54797398	54797398	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30492758	30492758	+	Splice_Site	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30492758	30492758	+	Splice_Site	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGAL	3683	broad.mit.edu	37	16	30492758	30492758	+	Splice_Site	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45367167	45367167	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45367167	45367167	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITGB3	3690	broad.mit.edu	37	17	45367167	45367167	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7763078	7763078	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITIH2	3698	broad.mit.edu	37	10	7763078	7763078	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156638260	156638260	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156673057	156673057	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156638260	156638260	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156673057	156673057	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156638260	156638260	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ITK	3702	broad.mit.edu	37	5	156673057	156673057	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6058394	6058394	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6058394	6058394	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP1	152789	broad.mit.edu	37	4	6058394	6058394	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146991680	146991680	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146991680	146991680	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
JAKMIP2	9832	broad.mit.edu	37	5	146991680	146991680	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20153368	20153368	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20153368	20153368	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KAT2B	8850	broad.mit.edu	37	3	20153368	20153368	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41705328	41705328	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41705328	41705328	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KBTBD6	89890	broad.mit.edu	37	13	41705328	41705328	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146880	111146880	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146880	111146880	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNA2	3737	broad.mit.edu	37	1	111146880	111146880	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40327894	40327894	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40327779	40327779	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40327894	40327894	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH4	23415	broad.mit.edu	37	17	40327779	40327779	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNH8	131096	broad.mit.edu	37	3	19554727	19554728	+	Frame_Shift_Ins	INS	-	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969187	118969187	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969187	118969187	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK18	338567	broad.mit.edu	37	10	118969187	118969187	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNK3	3777	broad.mit.edu	37	2	26950707	26950707	+	Silent	SNP	C	T	T	rs112956865		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KCNMA1	3778	broad.mit.edu	37	10	78850107	78850107	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55979649	55979649	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55979649	55979649	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KDR	3791	broad.mit.edu	37	4	55979649	55979649	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHNYN	23351	broad.mit.edu	37	14	24901180	24901180	+	Missense_Mutation	SNP	G	T	T	rs142344659		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHNYN	23351	broad.mit.edu	37	14	24901180	24901180	+	Missense_Mutation	SNP	G	T	T	rs142344659		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KHNYN	23351	broad.mit.edu	37	14	24901180	24901180	+	Missense_Mutation	SNP	G	T	T	rs142344659		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0494	9813	broad.mit.edu	37	1	47131032	47131032	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96996020	96996020	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA0776	23376	broad.mit.edu	37	6	96996020	96996020	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123095595	123095595	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1109	84162	broad.mit.edu	37	4	123095595	123095595	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118222495	118222496	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1210	57481	broad.mit.edu	37	X	118222495	118222496	+	Frame_Shift_Ins	INS	-	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57190447	57190447	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57190447	57190447	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57180982	57180982	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1211	57482	broad.mit.edu	37	4	57190447	57190447	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97274401	97274401	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97274401	97274401	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1310	55683	broad.mit.edu	37	2	97274401	97274401	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59895373	59895373	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA1468	57614	broad.mit.edu	37	18	59895373	59895373	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113388977	113388977	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113388977	113388977	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIAA2018	205717	broad.mit.edu	37	3	113388977	113388977	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16336950	16336950	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16336950	16336950	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF16B	55614	broad.mit.edu	37	20	16336950	16336950	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21014281	21014281	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21014281	21014281	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF17	57576	broad.mit.edu	37	1	21014281	21014281	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39734030	39734030	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39734030	39734030	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21A	55605	broad.mit.edu	37	12	39734030	39734030	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200978567	200978567	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200978567	200978567	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF21B	23046	broad.mit.edu	37	1	200978567	200978567	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34319235	34319235	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF24	347240	broad.mit.edu	37	9	34319235	34319235	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57963762	57963762	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57963762	57963762	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIF5A	3798	broad.mit.edu	37	12	57963762	57963762	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	169947178	169947178	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	169947178	169947178	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIFAP3	22920	broad.mit.edu	37	1	169947178	169947178	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349458	36349458	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349458	36349458	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIRREL2	84063	broad.mit.edu	37	19	36349458	36349458	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55593452	55593452	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55593452	55593452	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KIT	3815	broad.mit.edu	37	4	55593452	55593452	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70549966	70549966	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70549966	70549966	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL1	57626	broad.mit.edu	37	13	70549966	70549966	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL36	79786	broad.mit.edu	37	16	84693202	84693202	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KLHL36	79786	broad.mit.edu	37	16	84693202	84693202	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38950232	38950232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38954299	38954299	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38950232	38950232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38954299	38954299	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT28	162605	broad.mit.edu	37	17	38950232	38950232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT3	3850	broad.mit.edu	37	12	53186469	53186469	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT3	3850	broad.mit.edu	37	12	53186469	53186469	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT3	3850	broad.mit.edu	37	12	53186469	53186469	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52788890	52788890	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52788890	52788890	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRT82	3888	broad.mit.edu	37	12	52788890	52788890	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-12	386685	broad.mit.edu	37	21	46117289	46117289	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-12	386685	broad.mit.edu	37	21	46117289	46117289	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP10-12	386685	broad.mit.edu	37	21	46117289	46117289	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-2	337969	broad.mit.edu	37	21	31859737	31859737	+	5'Flank	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-2	337969	broad.mit.edu	37	21	31859737	31859737	+	5'Flank	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-2	337969	broad.mit.edu	37	21	31859737	31859737	+	5'Flank	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP19-6	337973	broad.mit.edu	37	21	31914108	31914108	+	Nonsense_Mutation	SNP	A	T	T	rs147961992	by1000genomes	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP26-1	388818	broad.mit.edu	37	21	31691607	31691607	+	3'UTR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP3-1	83896	broad.mit.edu	37	17	39165133	39165133	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP3-1	83896	broad.mit.edu	37	17	39165133	39165133	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTAP3-1	83896	broad.mit.edu	37	17	39165133	39165133	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTDAP	388533	broad.mit.edu	37	19	35978604	35978604	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTDAP	388533	broad.mit.edu	37	19	35978604	35978604	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KRTDAP	388533	broad.mit.edu	37	19	35978604	35978604	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143746581	143746581	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143746581	143746581	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
KYNU	8942	broad.mit.edu	37	2	143746581	143746581	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129635942	129635943	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129674483	129674483	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129635942	129635943	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129674483	129674483	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129635942	129635943	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA2	3908	broad.mit.edu	37	6	129674483	129674483	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA4	3910	broad.mit.edu	37	6	112450020	112450020	+	Intron	SNP	C	A	A	rs112627375	by1000genomes	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60904422	60904426	+	Intron	DEL	CAGCC	-	-	rs3065756		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMA5	3911	broad.mit.edu	37	20	60904422	60904426	+	Intron	DEL	CAGCC	-	-	rs3065756		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183091312	183091312	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183091312	183091312	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC1	3915	broad.mit.edu	37	1	183091312	183091312	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133914177	133914177	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133932444	133932444	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133914177	133914177	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133932444	133932444	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133914177	133914177	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAMC3	10319	broad.mit.edu	37	9	133932444	133932444	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	128990541	128990541	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	128990541	128990541	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LARP1B	55132	broad.mit.edu	37	4	128990541	128990541	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203743435	203743435	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203743435	203743435	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LAX1	54900	broad.mit.edu	37	1	203743435	203743435	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169697832	169697832	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169697832	169697832	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LCP2	3937	broad.mit.edu	37	5	169697832	169697832	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LEMD2	221496	broad.mit.edu	37	6	33744911	33744911	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LETM1	3954	broad.mit.edu	37	4	1824881	1824881	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LETM1	3954	broad.mit.edu	37	4	1824881	1824881	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LETM1	3954	broad.mit.edu	37	4	1824881	1824881	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197890725	197890725	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197890725	197890725	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LHX9	56956	broad.mit.edu	37	1	197890725	197890725	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38496379	38496379	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38496379	38496379	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIFR	3977	broad.mit.edu	37	5	38496379	38496379	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106135	55106135	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106135	55106135	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LILRA1	11024	broad.mit.edu	37	19	55106135	55106135	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMA1	51474	broad.mit.edu	37	12	50586248	50586249	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMA1	51474	broad.mit.edu	37	12	50586248	50586249	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LIMA1	51474	broad.mit.edu	37	12	50586248	50586249	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28150757	28150757	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28150757	28150757	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINGO2	158038	broad.mit.edu	37	9	28150757	28150757	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINS1	55180	broad.mit.edu	37	15	101110442	101110442	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LINS1	55180	broad.mit.edu	37	15	101110442	101110442	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1	3998	broad.mit.edu	37	18	57013089	57013089	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1	3998	broad.mit.edu	37	18	57013089	57013089	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMAN1	3998	broad.mit.edu	37	18	57013089	57013089	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNB2	84823	broad.mit.edu	37	19	2444345	2444345	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMNB2	84823	broad.mit.edu	37	19	2444345	2444345	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LMX1B	4010	broad.mit.edu	37	9	129458114	129458114	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100286793	100286793	broad.mit.edu	37	1	143720831	143720831	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC100286793	100286793	broad.mit.edu	37	1	143720831	143720831	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC286467	286467	broad.mit.edu	37	X	130937734	130937734	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132201174	132201174	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC401010	401010	broad.mit.edu	37	2	132201174	132201174	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49597720	49597720	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49831408	49831408	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49597720	49597720	+	5'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49831408	49831408	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC440040	440040	broad.mit.edu	37	11	49831408	49831408	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644669	644669	broad.mit.edu	37	18	15322103	15322103	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC644669	644669	broad.mit.edu	37	18	15322103	15322103	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75813171	75813171	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75813171	75813171	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOC647288	647288	broad.mit.edu	37	13	75813171	75813171	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOX	4015	broad.mit.edu	37	5	121402325	121402326	+	3'UTR	INS	-	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LOX	4015	broad.mit.edu	37	5	121402325	121402326	+	3'UTR	INS	-	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62845321	62845321	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LPHN3	23284	broad.mit.edu	37	4	62845321	62845321	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42368205	42368205	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42368205	42368205	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRFN5	145581	broad.mit.edu	37	14	42368205	42368205	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141253040	141253040	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141267498	141267498	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141253040	141253040	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141267498	141267498	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP1B	53353	broad.mit.edu	37	2	141267498	141267498	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170050428	170050428	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170050428	170050428	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRP2	4036	broad.mit.edu	37	2	170050428	170050428	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRPPRC	10128	broad.mit.edu	37	2	44204557	44204557	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRPPRC	10128	broad.mit.edu	37	2	44204557	44204557	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76371428	76371429	+	Frame_Shift_Ins	INS	-	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC32	2615	broad.mit.edu	37	11	76371428	76371429	+	Frame_Shift_Ins	INS	-	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861722	52861722	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861722	52861722	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC66	339977	broad.mit.edu	37	4	52861722	52861722	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133673737	133673737	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133673737	133673737	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC6	23639	broad.mit.edu	37	8	133673737	133673737	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70226056	70226056	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70226056	70226056	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRC7	57554	broad.mit.edu	37	1	70226056	70226056	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101529030	101529031	+	Intron	DNP	CA	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101606440	101606440	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101529030	101529031	+	Intron	DNP	CA	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101606440	101606440	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101529030	101529031	+	Intron	DNP	CA	TT	TT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRK1	79705	broad.mit.edu	37	15	101606440	101606440	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	76975866	76975867	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	76975866	76975867	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	76975866	76975867	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	76975892	76975892	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LRRTM4	80059	broad.mit.edu	37	2	77745809	77745809	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM12	124801	broad.mit.edu	37	17	42114710	42114710	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM12	124801	broad.mit.edu	37	17	42114710	42114710	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LSM12	124801	broad.mit.edu	37	17	42114710	42114710	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46496816	46496817	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46496816	46496817	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LTF	4057	broad.mit.edu	37	3	46496816	46496817	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6D	8581	broad.mit.edu	37	8	143866957	143866957	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LY6D	8581	broad.mit.edu	37	8	143866957	143866957	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL2	119180	broad.mit.edu	37	10	30918543	30918543	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL2	119180	broad.mit.edu	37	10	30918543	30918543	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LYZL2	119180	broad.mit.edu	37	10	30918543	30918543	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20112440	20112440	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20112440	20112440	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
LZTS1	11178	broad.mit.edu	37	8	20112440	20112440	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB1	4112	broad.mit.edu	37	X	30269510	30269510	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB1	4112	broad.mit.edu	37	X	30269510	30269510	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEB1	4112	broad.mit.edu	37	X	30269510	30269510	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995244	140995244	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGEC1	9947	broad.mit.edu	37	X	140995244	140995244	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAGOH	4116	broad.mit.edu	37	1	53692748	53692748	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML1	9794	broad.mit.edu	37	5	179200766	179200766	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML1	9794	broad.mit.edu	37	5	179200766	179200766	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAML1	9794	broad.mit.edu	37	5	179200766	179200766	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAN2A1	4124	broad.mit.edu	37	5	109110476	109110477	+	Intron	INS	-	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	67923355	67923355	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	67923355	67923355	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2K5	5607	broad.mit.edu	37	15	67923355	67923355	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210574656	210574656	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAP2	4133	broad.mit.edu	37	2	210574656	210574656	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1810345	1810345	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MAPK8IP3	23162	broad.mit.edu	37	16	1810345	1810345	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70892219	70892219	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCCC2	64087	broad.mit.edu	37	5	70892219	70892219	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM10	55388	broad.mit.edu	37	10	13246127	13246127	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM10	55388	broad.mit.edu	37	10	13246127	13246127	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCM10	55388	broad.mit.edu	37	10	13246127	13246127	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94224666	94224666	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94224666	94224666	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MCTP1	79772	broad.mit.edu	37	5	94224666	94224666	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47530541	47530541	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47530541	47530541	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDGA2	161357	broad.mit.edu	37	14	47530541	47530541	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDM1	56890	broad.mit.edu	37	12	68708818	68708819	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDM1	56890	broad.mit.edu	37	12	68708818	68708818	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MDM1	56890	broad.mit.edu	37	12	68708818	68708819	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116420148	116420148	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116420148	116420148	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED13L	23389	broad.mit.edu	37	12	116420148	116420148	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131912668	131912668	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131912668	131912668	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MED23	9439	broad.mit.edu	37	6	131912668	131912668	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3293233	3293233	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3293233	3293233	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEFV	4210	broad.mit.edu	37	16	3293233	3293233	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MEIS1	4211	broad.mit.edu	37	2	66794531	66794532	+	Intron	INS	-	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MFSD1	64747	broad.mit.edu	37	3	158537432	158537432	+	Intron	DEL	A	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141755521	141755521	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141760197	141760197	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141755521	141755521	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141760197	141760197	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141755521	141755521	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGAM	8972	broad.mit.edu	37	7	141760197	141760197	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC2752	65996	broad.mit.edu	37	19	59097638	59097638	+	RNA	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97596157	97596157	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97596157	97596157	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGC72080	389538	broad.mit.edu	37	7	97596157	97596157	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGST1	4257	broad.mit.edu	37	12	16510706	16510706	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGST1	4257	broad.mit.edu	37	12	16510706	16510706	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MGST1	4257	broad.mit.edu	37	12	16510706	16510706	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIB2	142678	broad.mit.edu	37	1	1562553	1562554	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL2	79778	broad.mit.edu	37	7	1478029	1478029	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MICALL2	79778	broad.mit.edu	37	7	1478029	1478029	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MINK1	50488	broad.mit.edu	37	17	4794819	4794819	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MINK1	50488	broad.mit.edu	37	17	4794819	4794819	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPOL1	145282	broad.mit.edu	37	14	37777135	37777135	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPOL1	145282	broad.mit.edu	37	14	37777135	37777135	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIPOL1	145282	broad.mit.edu	37	14	37777135	37777135	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR506	574511	broad.mit.edu	37	X	146312701	146312701	+	5'Flank	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR506	574511	broad.mit.edu	37	X	146312701	146312701	+	5'Flank	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR506	574511	broad.mit.edu	37	X	146312701	146312701	+	5'Flank	DEL	T	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR517B	574483	broad.mit.edu	37	19	54224383	54224383	+	RNA	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR517B	574483	broad.mit.edu	37	19	54224383	54224383	+	RNA	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MIR517B	574483	broad.mit.edu	37	19	54224383	54224383	+	RNA	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN2	23609	broad.mit.edu	37	3	12623216	12623216	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN2	23609	broad.mit.edu	37	3	12623216	12623216	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MKRN2	23609	broad.mit.edu	37	3	12623216	12623216	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLANA	2315	broad.mit.edu	37	9	5906856	5906856	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLANA	2315	broad.mit.edu	37	9	5906856	5906856	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLANA	2315	broad.mit.edu	37	9	5906856	5906856	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MLL3	58508	broad.mit.edu	37	7	151935752	151935752	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33793329	33793329	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33793329	33793329	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33793329	33793329	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOCOS	55034	broad.mit.edu	37	18	33839967	33839967	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132649636	132649636	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132649636	132649636	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MOXD1	26002	broad.mit.edu	37	6	132649636	132649636	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPEG1	219972	broad.mit.edu	37	11	58979381	58979381	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPEG1	219972	broad.mit.edu	37	11	58979381	58979381	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MPEG1	219972	broad.mit.edu	37	11	58979381	58979381	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX2	117194	broad.mit.edu	37	11	19077218	19077218	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX2	117194	broad.mit.edu	37	11	19077218	19077218	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MRGPRX2	117194	broad.mit.edu	37	11	19077218	19077218	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47656893	47656893	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47656893	47656893	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MSH2	4436	broad.mit.edu	37	2	47656893	47656893	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTMR14	64419	broad.mit.edu	37	3	9724974	9724974	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30629219	30629219	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30629219	30629219	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MTPAP	55149	broad.mit.edu	37	10	30629219	30629219	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9002093	9002093	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9008065	9008065	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9069492	9069492	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089844	9089844	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9002093	9002093	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9008065	9008065	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9069492	9069492	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089844	9089844	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9002093	9002093	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9008065	9008065	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9069492	9069492	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC16	94025	broad.mit.edu	37	19	9089844	9089844	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100663463	100663463	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100663463	100663463	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC17	140453	broad.mit.edu	37	7	100663463	100663463	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1213656	1213656	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1213656	1213656	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1219587	1219587	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1262069	1262069	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MUC5B	727897	broad.mit.edu	37	11	1213656	1213656	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50954516	50954516	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50954516	50954516	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYBPC2	4606	broad.mit.edu	37	19	50954516	50954516	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10204782	10204782	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10204782	10204782	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH13	8735	broad.mit.edu	37	17	10204782	10204782	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10350965	10350965	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH4	4622	broad.mit.edu	37	17	10350965	10350965	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23863047	23863047	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23871768	23871768	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23863047	23863047	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23871768	23871768	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23863047	23863047	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH6	4624	broad.mit.edu	37	14	23871768	23871768	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10322326	10322326	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10322326	10322326	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYH8	4626	broad.mit.edu	37	17	10312946	10312946	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171458581	171458581	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171458581	171458581	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO3B	140469	broad.mit.edu	37	2	171458581	171458581	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47463659	47463659	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47463659	47463659	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO5B	4645	broad.mit.edu	37	18	47463659	47463659	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO7B	4648	broad.mit.edu	37	2	128381727	128381727	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYO9B	4650	broad.mit.edu	37	19	17311437	17311438	+	Intron	INS	-	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOC	4653	broad.mit.edu	37	1	171605172	171605172	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOC	4653	broad.mit.edu	37	1	171605172	171605172	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOC	4653	broad.mit.edu	37	1	171607510	171607510	+	Intron	DEL	A	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOC	4653	broad.mit.edu	37	1	171605172	171605172	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
MYOM2	9172	broad.mit.edu	37	8	2065666	2065666	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41897473	41897473	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAA16	79612	broad.mit.edu	37	13	41897473	41897473	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89891342	89891342	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89896515	89896515	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89891342	89891342	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89896515	89896515	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89891342	89891342	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAALAD2	10003	broad.mit.edu	37	11	89896515	89896515	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78147595	78147595	+	3'UTR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78147595	78147595	+	3'UTR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NARS2	79731	broad.mit.edu	37	11	78147595	78147595	+	3'UTR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34139979	34139979	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34139979	34139979	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NAT10	55226	broad.mit.edu	37	11	34139979	34139979	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15492159	15492159	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15523532	15523532	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15492159	15492159	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15523532	15523532	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15492159	15492159	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBAS	51594	broad.mit.edu	37	2	15523532	15523532	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35770394	35770394	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35770394	35770394	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBEA	26960	broad.mit.edu	37	13	35770394	35770394	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF1	55672	broad.mit.edu	37	1	16894081	16894082	+	Intron	DEL	AG	-	-	rs35523431		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NBPF9	400818	broad.mit.edu	37	1	144824512	144824512	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133636514	133636514	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133636514	133636514	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCKAP5	344148	broad.mit.edu	37	2	133636514	133636514	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCLN	56926	broad.mit.edu	37	19	3204605	3204605	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCLN	56926	broad.mit.edu	37	19	3204605	3204605	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NCR2	9436	broad.mit.edu	37	6	41304233	41304233	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA8	4702	broad.mit.edu	37	9	124914760	124914760	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA8	4702	broad.mit.edu	37	9	124914760	124914760	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NDUFA8	4702	broad.mit.edu	37	9	124914760	124914760	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB1	64168	broad.mit.edu	37	8	91937778	91937778	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NECAB2	54550	broad.mit.edu	37	16	84034541	84034541	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK10	152110	broad.mit.edu	37	3	27329206	27329206	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170428198	170428198	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170428198	170428198	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEK1	4750	broad.mit.edu	37	4	170428198	170428198	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20699660	20699660	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20699660	20699660	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL1	4745	broad.mit.edu	37	11	20699660	20699660	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45170058	45170058	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NELL2	4753	broad.mit.edu	37	12	45170058	45170058	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73566113	73566113	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73566113	73566113	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEO1	4756	broad.mit.edu	37	15	73566113	73566113	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NEUROD6	63974	broad.mit.edu	37	7	31378427	31378427	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29528379	29528379	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29657518	29657518	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29528379	29528379	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29657518	29657518	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29528379	29528379	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29657518	29657518	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NF1	4763	broad.mit.edu	37	17	29667614	29667614	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77170072	77170072	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77170072	77170072	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFATC1	4772	broad.mit.edu	37	18	77170072	77170072	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIC	4782	broad.mit.edu	37	19	3452610	3452610	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIC	4782	broad.mit.edu	37	19	3452610	3452610	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NFIC	4782	broad.mit.edu	37	19	3452610	3452610	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25450616	25450616	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25450616	25450616	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NINL	22981	broad.mit.edu	37	20	25450616	25450616	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63769333	63769334	+	Intron	DNP	CC	AA	AA			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NKAIN3	286183	broad.mit.edu	37	8	63777919	63777919	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLGN1	22871	broad.mit.edu	37	3	173993445	173993445	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3615000	3615000	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3615000	3615000	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRC3	197358	broad.mit.edu	37	16	3615000	3615000	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7061107	7061107	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7064372	7064372	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7061107	7061107	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7064372	7064372	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7061107	7061107	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP14	338323	broad.mit.edu	37	11	7064372	7064372	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5462598	5462598	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5462598	5462598	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP1	22861	broad.mit.edu	37	17	5462598	5462598	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539899	56539899	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56544904	56544904	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539899	56539899	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56544904	56544904	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56539899	56539899	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NLRP5	126206	broad.mit.edu	37	19	56544904	56544904	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMD3	51068	broad.mit.edu	37	3	160945076	160945076	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMD3	51068	broad.mit.edu	37	3	160945076	160945076	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NMD3	51068	broad.mit.edu	37	3	160945076	160945076	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC4L	79050	broad.mit.edu	37	12	132636234	132636234	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOC4L	79050	broad.mit.edu	37	12	132636234	132636234	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14989245	14989245	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOMO1	23420	broad.mit.edu	37	16	14989245	14989245	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOXA1	10811	broad.mit.edu	37	9	140327859	140327859	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NOXA1	10811	broad.mit.edu	37	9	140327859	140327859	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36322556	36322556	+	Missense_Mutation	SNP	C	T	T	rs144203682	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36322556	36322556	+	Missense_Mutation	SNP	C	T	T	rs144203682	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NPHS1	4868	broad.mit.edu	37	19	36322556	36322556	+	Missense_Mutation	SNP	C	T	T	rs144203682	byFrequency	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115410292	115410292	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115410292	115410292	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAP	4892	broad.mit.edu	37	10	115410292	115410292	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115258837	115258837	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115258839	115258839	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115258837	115258837	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115258839	115258839	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115258837	115258837	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRAS	4893	broad.mit.edu	37	1	115258839	115258839	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107830179	107830179	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107830179	107830179	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRCAM	4897	broad.mit.edu	37	7	107830179	107830179	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84118482	84118482	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84118482	84118482	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRG3	10718	broad.mit.edu	37	10	84118482	84118482	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50318334	50318334	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50765580	50765580	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50318334	50318334	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50765580	50765580	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50318334	50318334	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NRXN1	9378	broad.mit.edu	37	2	50765580	50765580	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176686968	176686968	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176686968	176686968	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSD1	64324	broad.mit.edu	37	5	176686968	176686968	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSL1	25936	broad.mit.edu	37	1	212912853	212912853	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSL1	25936	broad.mit.edu	37	1	212912853	212912853	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSL1	25936	broad.mit.edu	37	1	212912853	212912853	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NSMAF	8439	broad.mit.edu	37	8	59514477	59514477	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135258392	135258392	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135304240	135304240	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135258392	135258392	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135304240	135304240	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135258392	135258392	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NUP205	23165	broad.mit.edu	37	7	135304240	135304240	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
NXF1	10482	broad.mit.edu	37	11	62564556	62564556	+	Intron	DEL	C	-	-	rs111331941		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113447062	113447063	+	Intron	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113447062	113447063	+	Intron	DNP	GG	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OAS2	4939	broad.mit.edu	37	12	113447062	113447063	+	Intron	DNP	GG	TT	TT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133044327	133044327	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133044327	133044327	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OC90	729330	broad.mit.edu	37	8	133044327	133044327	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123663869	123663869	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870955	123870955	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123663869	123663869	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870955	123870955	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123663869	123663869	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ODZ1	10178	broad.mit.edu	37	X	123870955	123870955	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM2	93145	broad.mit.edu	37	19	9967991	9967991	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM2	93145	broad.mit.edu	37	19	9968420	9968420	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM2	93145	broad.mit.edu	37	19	9967991	9967991	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM2	93145	broad.mit.edu	37	19	9968420	9968420	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM2	93145	broad.mit.edu	37	19	9967991	9967991	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM2	93145	broad.mit.edu	37	19	9968420	9968420	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624298	53624298	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624298	53624298	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OLFM4	10562	broad.mit.edu	37	13	53624298	53624298	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPA1	4976	broad.mit.edu	37	3	193332874	193332874	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPA1	4976	broad.mit.edu	37	3	193332874	193332874	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPA1	4976	broad.mit.edu	37	3	193332874	193332874	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRK1	4986	broad.mit.edu	37	8	54147208	54147208	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154411267	154411267	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154411267	154411267	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OPRM1	4988	broad.mit.edu	37	6	154411267	154411267	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10AD1	121275	broad.mit.edu	37	12	48597083	48597083	+	5'Flank	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390454	158390454	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390454	158390454	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10K2	391107	broad.mit.edu	37	1	158390454	158390454	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450337	158450337	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450337	158450337	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10R2	343406	broad.mit.edu	37	1	158450337	158450337	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10T2	128360	broad.mit.edu	37	1	158368914	158368914	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10T2	128360	broad.mit.edu	37	1	158368914	158368914	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR10T2	128360	broad.mit.edu	37	1	158368914	158368914	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248005246	248005247	+	5'Flank	DNP	CG	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248005246	248005247	+	5'Flank	DNP	CG	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR11L1	391189	broad.mit.edu	37	1	248005246	248005247	+	5'Flank	DNP	CG	AA	AA			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C3	138803	broad.mit.edu	37	9	107298376	107298376	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C3	138803	broad.mit.edu	37	9	107298376	107298376	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13C3	138803	broad.mit.edu	37	9	107298376	107298376	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835561	247835561	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835561	247835561	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR13G1	441933	broad.mit.edu	37	1	247835561	247835561	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343333	248343333	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343333	248343333	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2M2	391194	broad.mit.edu	37	1	248343333	248343333	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248813304	248813304	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248813304	248813304	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR2T27	403239	broad.mit.edu	37	1	248813304	248813304	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51412283	51412283	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51412283	51412283	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4A5	81318	broad.mit.edu	37	11	51412283	51412283	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974443	49974443	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4C13	283092	broad.mit.edu	37	11	49974443	49974443	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247058	56247058	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247058	56247058	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4D2	124538	broad.mit.edu	37	17	56247058	56247058	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406728	55406728	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406728	55406728	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR4P4	81300	broad.mit.edu	37	11	55406728	55406728	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5364170	5364170	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5364170	5364170	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR51B5	282763	broad.mit.edu	37	11	5364170	5364170	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N5	390075	broad.mit.edu	37	11	5799229	5799229	+	Silent	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N5	390075	broad.mit.edu	37	11	5799229	5799229	+	Silent	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR52N5	390075	broad.mit.edu	37	11	5799229	5799229	+	Silent	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A1	120796	broad.mit.edu	37	11	6048891	6048891	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A1	120796	broad.mit.edu	37	11	6048891	6048891	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR56A1	120796	broad.mit.edu	37	11	6048891	6048891	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B21	219968	broad.mit.edu	37	11	58275002	58275002	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B21	219968	broad.mit.edu	37	11	58275002	58275002	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5B21	219968	broad.mit.edu	37	11	58275002	58275002	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5F1	338674	broad.mit.edu	37	11	55761855	55761855	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579661	55579661	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579661	55579661	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5L1	219437	broad.mit.edu	37	11	55579661	55579661	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380768	56380768	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380768	56380768	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR5M1	390168	broad.mit.edu	37	11	56380768	56380768	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158669653	158669653	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158669653	158669653	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K2	81448	broad.mit.edu	37	1	158669653	158669653	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K3	391114	broad.mit.edu	37	1	158687606	158687606	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K3	391114	broad.mit.edu	37	1	158687606	158687606	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6K3	391114	broad.mit.edu	37	1	158687606	158687606	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21109284	21109284	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21109284	21109284	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6S1	341799	broad.mit.edu	37	14	21109284	21109284	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR6W1P	89883	broad.mit.edu	37	7	142760181	142760181	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8A1	390275	broad.mit.edu	37	11	124440930	124440930	+	Missense_Mutation	SNP	G	T	T	rs145520583		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8A1	390275	broad.mit.edu	37	11	124440930	124440930	+	Missense_Mutation	SNP	G	T	T	rs145520583		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8A1	390275	broad.mit.edu	37	11	124440930	124440930	+	Missense_Mutation	SNP	G	T	T	rs145520583		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B3	390271	broad.mit.edu	37	11	124266919	124266919	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B3	390271	broad.mit.edu	37	11	124266919	124266919	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8B3	390271	broad.mit.edu	37	11	124266919	124266919	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8G2	26492	broad.mit.edu	37	11	124095613	124095613	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8G2	26492	broad.mit.edu	37	11	124095613	124095613	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR8G2	26492	broad.mit.edu	37	11	124095613	124095613	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57798414	57798414	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57798414	57798414	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OR9Q1	219956	broad.mit.edu	37	11	57798414	57798414	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC4L	5000	broad.mit.edu	37	2	148716452	148716452	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC4L	5000	broad.mit.edu	37	2	148716452	148716452	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ORC4L	5000	broad.mit.edu	37	2	148716452	148716452	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBP2	23762	broad.mit.edu	37	22	31287087	31287087	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OSBPL1A	114876	broad.mit.edu	37	18	21805115	21805115	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD6A	139562	broad.mit.edu	37	X	69282458	69282458	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD6A	139562	broad.mit.edu	37	X	69282458	69282458	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTUD6A	139562	broad.mit.edu	37	X	69282458	69282458	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX1	5013	broad.mit.edu	37	2	63282626	63282626	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OTX1	5013	broad.mit.edu	37	2	63282626	63282626	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OVCH1	341350	broad.mit.edu	37	12	29650693	29650693	+	5'Flank	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXGR1	27199	broad.mit.edu	37	13	97639260	97639260	+	Missense_Mutation	SNP	C	A	A	rs144457939		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXGR1	27199	broad.mit.edu	37	13	97639260	97639260	+	Missense_Mutation	SNP	C	A	A	rs144457939		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
OXGR1	27199	broad.mit.edu	37	13	97639260	97639260	+	Missense_Mutation	SNP	C	A	A	rs144457939		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX2	22953	broad.mit.edu	37	12	133198443	133198443	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX2	22953	broad.mit.edu	37	12	133198443	133198443	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P2RX2	22953	broad.mit.edu	37	12	133198443	133198443	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
P4HTM	54681	broad.mit.edu	37	3	49027918	49027918	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE1	8712	broad.mit.edu	37	X	49455831	49455831	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE1	8712	broad.mit.edu	37	X	49455831	49455831	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAGE1	8712	broad.mit.edu	37	X	49455831	49455831	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAK7	57144	broad.mit.edu	37	20	9546606	9546606	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176661180	176661180	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176661180	176661180	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAPPA2	60676	broad.mit.edu	37	1	176661180	176661180	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25458904	25458904	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25458904	25458904	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PAR4	347745	broad.mit.edu	37	15	25458904	25458904	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVG	64098	broad.mit.edu	37	22	44581730	44581730	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVG	64098	broad.mit.edu	37	22	44581730	44581730	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PARVG	64098	broad.mit.edu	37	22	44581730	44581730	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX3	5090	broad.mit.edu	37	9	128725283	128725283	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX3	5090	broad.mit.edu	37	9	128725283	128725283	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX3	5090	broad.mit.edu	37	9	128725283	128725283	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX4	80714	broad.mit.edu	37	19	19681554	19681554	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PBX4	80714	broad.mit.edu	37	19	19681554	19681554	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134111245	134111245	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134111245	134111245	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH10	57575	broad.mit.edu	37	4	134111245	134111245	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55719477	55719477	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55719477	55719477	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH15	65217	broad.mit.edu	37	10	55719477	55719477	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207122	58207122	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207470	58207470	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207122	58207122	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207470	58207470	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207122	58207122	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDH17	27253	broad.mit.edu	37	13	58207470	58207470	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA1	56114	broad.mit.edu	37	5	140711062	140711062	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744233	140744233	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140745002	140745002	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744233	140744233	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140745002	140745002	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGA5	56110	broad.mit.edu	37	5	140744233	140744233	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB6	56100	broad.mit.edu	37	5	140789266	140789266	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCDHGB6	56100	broad.mit.edu	37	5	140789266	140789266	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82868476	82868476	+	5'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCF11	51585	broad.mit.edu	37	11	82868476	82868476	+	5'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93031353	93031353	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93031353	93031353	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCGF5	84333	broad.mit.edu	37	10	93031353	93031353	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71498684	71498684	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71498684	71498684	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PCNX	22990	broad.mit.edu	37	14	71498684	71498684	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31917664	31917664	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31917664	31917664	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31829890	31829890	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE1C	5137	broad.mit.edu	37	7	31917664	31917664	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDE6D	5147	broad.mit.edu	37	2	232602683	232602683	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDIA5	10954	broad.mit.edu	37	3	122821475	122821475	+	Intron	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39851298	39851298	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39851298	39851298	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PDS5A	23244	broad.mit.edu	37	4	39851298	39851298	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153312856	153312856	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153312856	153312856	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PGLYRP4	57115	broad.mit.edu	37	1	153312856	153312856	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11068363	11068363	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11068363	11068363	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHF14	9678	broad.mit.edu	37	7	11068363	11068363	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHRF1	57661	broad.mit.edu	37	11	608329	608329	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHRF1	57661	broad.mit.edu	37	11	608329	608329	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHD1	254295	broad.mit.edu	37	9	131703056	131703056	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHD1	254295	broad.mit.edu	37	9	131703056	131703056	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PHYHD1	254295	broad.mit.edu	37	9	131703056	131703056	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PI4KA	5297	broad.mit.edu	37	22	21174934	21174934	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS3	10401	broad.mit.edu	37	1	145578690	145578690	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS3	10401	broad.mit.edu	37	1	145578690	145578690	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIAS3	10401	broad.mit.edu	37	1	145578690	145578690	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73428300	73428300	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73428300	73428300	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIBF1	10464	broad.mit.edu	37	13	73428300	73428300	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRA	29992	broad.mit.edu	37	7	99971855	99971855	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRA	29992	broad.mit.edu	37	7	99971855	99971855	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRA	29992	broad.mit.edu	37	7	99971855	99971855	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PILRB	29990	broad.mit.edu	37	7	99956501	99956501	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130839647	130839647	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130839647	130839647	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130833803	130833803	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PIWIL1	9271	broad.mit.edu	37	12	130839647	130839647	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110442130	110442130	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110455867	110455867	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110442130	110442130	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1L1	93035	broad.mit.edu	37	8	110455867	110455867	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51701097	51701097	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51701097	51701097	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKHD1	5314	broad.mit.edu	37	6	51701097	51701097	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125300031	125300031	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125300031	125300031	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PKNOX2	63876	broad.mit.edu	37	11	125300031	125300031	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLA2G4E	123745	broad.mit.edu	37	15	42302337	42302338	+	In_Frame_Ins	INS	-	CCA	CCA	rs28736629		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9319711	9319711	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9319711	9319711	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLCB4	5332	broad.mit.edu	37	20	9319711	9319711	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19418828	19418828	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19418828	19418828	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHA5	54477	broad.mit.edu	37	12	19418828	19418828	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6530442	6530442	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLEKHG5	57449	broad.mit.edu	37	1	6530442	6530442	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLIN4	729359	broad.mit.edu	37	19	4513206	4513206	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12012857	12012857	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLOD1	5351	broad.mit.edu	37	1	12012857	12012857	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC1	57125	broad.mit.edu	37	17	37264449	37264449	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC1	57125	broad.mit.edu	37	17	37264449	37264449	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20534470	20534470	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20534470	20534470	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXDC2	84898	broad.mit.edu	37	10	20534470	20534470	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131830026	131830026	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131830026	131830026	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNA4	91584	broad.mit.edu	37	7	131830026	131830026	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50719028	50719028	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PLXNB2	23654	broad.mit.edu	37	22	50719028	50719028	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMP2	5375	broad.mit.edu	37	8	82355575	82355575	+	3'UTR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMP2	5375	broad.mit.edu	37	8	82355575	82355575	+	3'UTR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PMP2	5375	broad.mit.edu	37	8	82355575	82355575	+	3'UTR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNMA5	114824	broad.mit.edu	37	X	152158595	152158595	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA5	150379	broad.mit.edu	37	22	44276628	44276628	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PNPLA5	150379	broad.mit.edu	37	22	44276628	44276628	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133256255	133256255	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133256255	133256255	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLE	5426	broad.mit.edu	37	12	133256255	133256255	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89862224	89862224	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89862224	89862224	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLG	5428	broad.mit.edu	37	15	89862224	89862224	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79789048	79789049	+	Intron	INS	-	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POLR3A	11128	broad.mit.edu	37	10	79789048	79789049	+	Intron	INS	-	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEB	339010	broad.mit.edu	37	15	22074789	22074789	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POTEB	339010	broad.mit.edu	37	15	22074789	22074789	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39125675	39125675	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39125675	39125675	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
POU6F2	11281	broad.mit.edu	37	7	39125675	39125675	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170493474	170493475	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170493474	170493475	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPIG	9360	broad.mit.edu	37	2	170493474	170493475	+	Missense_Mutation	DNP	GG	CT	CT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63083523	63083523	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63083523	63083523	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPM1H	57460	broad.mit.edu	37	12	63083523	63083523	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54976615	54976615	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54976615	54976615	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R1A	5502	broad.mit.edu	37	12	54976615	54976615	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113519512	113519512	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113519512	113519512	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP1R3A	5506	broad.mit.edu	37	7	113519512	113519512	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146070811	146070811	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146070811	146070811	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PPP2R2B	5521	broad.mit.edu	37	5	146070811	146070811	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70981463	70981463	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70981463	70981463	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM14	63978	broad.mit.edu	37	8	70981463	70981463	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14106677	14106677	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14106677	14106677	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM2	7799	broad.mit.edu	37	1	14106677	14106677	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23517995	23517995	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527675	23527675	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23517995	23517995	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527675	23527675	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23517995	23517995	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRDM9	56979	broad.mit.edu	37	5	23527675	23527675	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47267409	47267409	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47267409	47267409	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PREX1	57580	broad.mit.edu	37	20	47267409	47267409	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186269417	186269417	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186269417	186269417	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRG4	10216	broad.mit.edu	37	1	186269417	186269417	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24166177	24166178	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24166177	24166178	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRKCB	5579	broad.mit.edu	37	16	24166177	24166178	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35070163	35070163	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35070163	35070163	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRLR	5618	broad.mit.edu	37	5	35070163	35070163	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23A	729627	broad.mit.edu	37	3	138724401	138724401	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR23A	729627	broad.mit.edu	37	3	138724401	138724401	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36422595	36422595	+	5'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36422595	36422595	+	5'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PRR5L	79899	broad.mit.edu	37	11	36422595	36422595	+	5'UTR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43699021	43699021	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43699021	43699021	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG4	5672	broad.mit.edu	37	19	43699021	43699021	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43687550	43687550	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43687550	43687550	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG5	5673	broad.mit.edu	37	19	43687550	43687550	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43421817	43421817	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG6	5675	broad.mit.edu	37	19	43421817	43421817	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG8	440533	broad.mit.edu	37	19	43257330	43257330	+	3'UTR	SNP	T	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PSG9	5678	broad.mit.edu	37	19	43771692	43771692	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGDS	5730	broad.mit.edu	37	9	139873413	139873413	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGES2	80142	broad.mit.edu	37	9	130886279	130886279	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117517065	117517065	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTGFRN	5738	broad.mit.edu	37	1	117517065	117517065	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27312084	27312084	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27312084	27312084	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTK2B	2185	broad.mit.edu	37	8	27312084	27312084	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	3007519	3007519	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	3007519	3007519	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRA	5786	broad.mit.edu	37	20	3007519	3007519	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198703339	198703339	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198703339	198703339	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRC	5788	broad.mit.edu	37	1	198703339	198703339	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8470947	8470947	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8470947	8470947	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRD	5789	broad.mit.edu	37	9	8470947	8470947	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15668624	15668624	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15668624	15668624	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRO	5800	broad.mit.edu	37	12	15668624	15668624	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40748659	40748659	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40748659	40748659	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRT	11122	broad.mit.edu	37	20	40748659	40748659	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121650791	121650791	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121650791	121650791	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTPRZ1	5803	broad.mit.edu	37	7	121650791	121650791	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTS	5805	broad.mit.edu	37	11	112101052	112101052	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTS	5805	broad.mit.edu	37	11	112101052	112101052	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTS	5805	broad.mit.edu	37	11	112101052	112101052	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTX3	5806	broad.mit.edu	37	3	157154711	157154711	+	5'UTR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTX3	5806	broad.mit.edu	37	3	157154711	157154711	+	5'UTR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PTX3	5806	broad.mit.edu	37	3	157154711	157154711	+	5'UTR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PUS7	54517	broad.mit.edu	37	7	105111299	105111300	+	Intron	INS	-	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52287227	52287227	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320977	52320977	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52287227	52287227	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320977	52320977	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52287227	52287227	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52320977	52320977	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PXDNL	137902	broad.mit.edu	37	8	52339182	52339182	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9301592	9301592	+	Intron	SNP	T	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9301592	9301592	+	Intron	SNP	T	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9301592	9301592	+	Intron	SNP	T	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
PZP	5858	broad.mit.edu	37	12	9345212	9345212	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QRICH2	84074	broad.mit.edu	37	17	74275085	74275085	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32995145	32995145	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32995145	32995145	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
QSER1	79832	broad.mit.edu	37	11	32995145	32995145	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220373993	220373993	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220373993	220373993	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220427549	220427549	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220373993	220373993	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB3GAP2	25782	broad.mit.edu	37	1	220427549	220427549	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAB5A	5868	broad.mit.edu	37	3	20017690	20017690	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAD50	10111	broad.mit.edu	37	5	131945236	131945236	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGDS	5900	broad.mit.edu	37	9	136031197	136031197	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALGDS	5900	broad.mit.edu	37	9	136031197	136031197	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RALYL	138046	broad.mit.edu	37	8	85591636	85591637	+	Intron	INS	-	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3L	202151	broad.mit.edu	37	5	36265657	36265657	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RANBP3L	202151	broad.mit.edu	37	5	36265657	36265657	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21925964	21925964	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21925964	21925964	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RAP1GAP	5909	broad.mit.edu	37	1	21925964	21925964	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114778667	114778667	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114778667	114778667	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASA3	22821	broad.mit.edu	37	13	114778667	114778667	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113553049	113553049	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113553049	113553049	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL1	8437	broad.mit.edu	37	12	113553049	113553049	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178252788	178252789	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178252788	178252789	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASAL2	9462	broad.mit.edu	37	1	178252788	178252789	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RASIP1	54922	broad.mit.edu	37	19	49224136	49224136	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3266366	3266366	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3266366	3266366	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RFX3	5991	broad.mit.edu	37	9	3266366	3266366	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105010526	105010526	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105010526	105010526	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RIMS2	9699	broad.mit.edu	37	8	105010526	105010526	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLN2	6019	broad.mit.edu	37	9	5300244	5300244	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLN2	6019	broad.mit.edu	37	9	5300244	5300244	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RLN2	6019	broad.mit.edu	37	9	5300244	5300244	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE2	6036	broad.mit.edu	37	14	21424301	21424301	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE2	6036	broad.mit.edu	37	14	21424301	21424301	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNASE2	6036	broad.mit.edu	37	14	21424301	21424301	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF175	285533	broad.mit.edu	37	4	154631639	154631639	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RNF175	285533	broad.mit.edu	37	4	154631639	154631639	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78688790	78688790	+	Intron	SNP	C	A	A	rs73850744	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO1	6091	broad.mit.edu	37	3	78688790	78688790	+	Intron	SNP	C	A	A	rs73850744	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77684057	77684057	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77684057	77684057	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROBO2	6092	broad.mit.edu	37	3	77684057	77684057	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94493469	94493469	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94493469	94493469	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ROR2	4920	broad.mit.edu	37	9	94493469	94493469	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77257566	77257566	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77257566	77257566	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RORB	6096	broad.mit.edu	37	9	77257566	77257566	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS18	6222	broad.mit.edu	37	6	33244073	33244073	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS18	6222	broad.mit.edu	37	6	33244073	33244073	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RPS18	6222	broad.mit.edu	37	6	33244073	33244073	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD2	91543	broad.mit.edu	37	2	7036027	7036027	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD2	91543	broad.mit.edu	37	2	7036027	7036027	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSAD2	91543	broad.mit.edu	37	2	7036027	7036027	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH1	89765	broad.mit.edu	37	21	43906471	43906471	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH4A	345895	broad.mit.edu	37	6	116938031	116938031	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH4A	345895	broad.mit.edu	37	6	116938033	116938033	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH4A	345895	broad.mit.edu	37	6	116938031	116938031	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH4A	345895	broad.mit.edu	37	6	116938033	116938033	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH4A	345895	broad.mit.edu	37	6	116938031	116938031	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RSPH4A	345895	broad.mit.edu	37	6	116938033	116938033	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN2	6253	broad.mit.edu	37	19	45998403	45998403	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN2	6253	broad.mit.edu	37	19	45998403	45998403	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RTN2	6253	broad.mit.edu	37	19	45998403	45998403	+	Intron	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRB	6257	broad.mit.edu	37	6	33164224	33164224	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RXRB	6257	broad.mit.edu	37	6	33164224	33164224	+	Frame_Shift_Del	DEL	C	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237540714	237540714	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237711906	237711906	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237540714	237540714	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237711906	237711906	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237540714	237540714	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR2	6262	broad.mit.edu	37	1	237711906	237711906	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34018617	34018617	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
RYR3	6263	broad.mit.edu	37	15	34064246	34064246	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A7	6278	broad.mit.edu	37	1	153430349	153430349	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A7	6278	broad.mit.edu	37	1	153430349	153430349	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
S100A7	6278	broad.mit.edu	37	1	153430349	153430349	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA4	6291	broad.mit.edu	37	11	18253967	18253967	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA4	6291	broad.mit.edu	37	11	18253967	18253967	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAA4	6291	broad.mit.edu	37	11	18253967	18253967	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988770	134988770	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134992580	134992580	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988770	134988770	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134992580	134992580	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134988770	134988770	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAGE1	55511	broad.mit.edu	37	X	134992580	134992580	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD4B	55095	broad.mit.edu	37	19	39847518	39847518	+	5'UTR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD4B	55095	broad.mit.edu	37	19	39847518	39847518	+	5'UTR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAMD8	142891	broad.mit.edu	37	10	76869039	76869039	+	5'Flank	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS1	22870	broad.mit.edu	37	19	55742243	55742243	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SAPS1	22870	broad.mit.edu	37	19	55742243	55742243	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18457731	18457731	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SATB1	6304	broad.mit.edu	37	3	18457731	18457731	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50900255	50900255	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50900255	50900255	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SBF1	6305	broad.mit.edu	37	22	50900255	50900255	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG3	29106	broad.mit.edu	37	15	51980625	51980625	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG3	29106	broad.mit.edu	37	15	51980625	51980625	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCG3	29106	broad.mit.edu	37	15	51980625	51980625	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25689863	25689863	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25689863	25689863	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCGN	10590	broad.mit.edu	37	6	25689863	25689863	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835559	38835559	+	5'Flank	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835559	38835559	+	5'Flank	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN10A	6336	broad.mit.edu	37	3	38835559	38835559	+	5'Flank	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165984466	165984466	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165984466	165984466	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN3A	6328	broad.mit.edu	37	2	165984466	165984466	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622447	38622447	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622447	38622447	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCN5A	6331	broad.mit.edu	37	3	38622447	38622447	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNM1	79005	broad.mit.edu	37	1	151139936	151139936	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNM1	79005	broad.mit.edu	37	1	151139936	151139936	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SCNM1	79005	broad.mit.edu	37	1	151139936	151139936	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139371251	139371251	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139371251	139371251	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC16A	9919	broad.mit.edu	37	9	139371251	139371251	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102249075	102249075	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102249075	102249075	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC31B	25956	broad.mit.edu	37	10	102249075	102249075	+	Silent	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12185254	12185254	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12185254	12185254	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEC61A2	55176	broad.mit.edu	37	10	12185254	12185254	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SECISBP2	79048	broad.mit.edu	37	9	91940959	91940959	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13894608	13894608	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13894608	13894608	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEL1L2	80343	broad.mit.edu	37	20	13894608	13894608	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELENBP1	8991	broad.mit.edu	37	1	151338093	151338093	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELENBP1	8991	broad.mit.edu	37	1	151338093	151338093	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELENBP1	8991	broad.mit.edu	37	1	151338093	151338093	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169578722	169578722	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169578722	169578722	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SELP	6403	broad.mit.edu	37	1	169578722	169578722	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84669987	84669987	+	Splice_Site	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84669987	84669987	+	Splice_Site	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA3D	223117	broad.mit.edu	37	7	84669987	84669987	+	Splice_Site	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6B	10501	broad.mit.edu	37	19	4556234	4556234	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48064068	48064069	+	3'UTR	DNP	CT	AC	AC			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEMA6D	80031	broad.mit.edu	37	15	48064068	48064069	+	3'UTR	DNP	CT	AC	AC			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95088804	95088804	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95088804	95088804	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SERPINA3	12	broad.mit.edu	37	14	95088804	95088804	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42531706	42531706	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42531706	42531706	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SETBP1	26040	broad.mit.edu	37	18	42531706	42531706	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26709619	26709619	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26709619	26709619	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SEZ6L	23544	broad.mit.edu	37	22	26709619	26709619	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B1	23451	broad.mit.edu	37	2	198266709	198266709	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B1	23451	broad.mit.edu	37	2	198266709	198266709	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SF3B1	23451	broad.mit.edu	37	2	198266709	198266709	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP4	6424	broad.mit.edu	37	7	37951987	37951987	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRP4	6424	broad.mit.edu	37	7	37951987	37951987	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS18	25957	broad.mit.edu	37	6	99862417	99862417	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS18	25957	broad.mit.edu	37	6	99862417	99862417	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS18	25957	broad.mit.edu	37	6	99862417	99862417	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SFRS6	6431	broad.mit.edu	37	20	42088919	42088919	+	Intron	SNP	T	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28880415	28880415	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SH2B1	25970	broad.mit.edu	37	16	28880417	28880417	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC11	114132	broad.mit.edu	37	19	50462233	50462233	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC11	114132	broad.mit.edu	37	19	50463693	50463694	+	Intron	INS	-	T	T	rs33937902		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC11	114132	broad.mit.edu	37	19	50462233	50462233	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC11	114132	broad.mit.edu	37	19	50462233	50462233	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3677979	3677979	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC1	6614	broad.mit.edu	37	20	3677979	3677979	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIGLEC8	27181	broad.mit.edu	37	19	51956036	51956036	+	Intron	SNP	T	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1	6494	broad.mit.edu	37	11	65413583	65413583	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIPA1	6494	broad.mit.edu	37	11	65413583	65413583	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB2	284759	broad.mit.edu	37	20	1460697	1460697	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB2	284759	broad.mit.edu	37	20	1460697	1460697	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SIRPB2	284759	broad.mit.edu	37	20	1460697	1460697	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP2	8935	broad.mit.edu	37	7	27022921	27022921	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKAP2	8935	broad.mit.edu	37	7	27022921	27022921	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP2	6502	broad.mit.edu	37	5	36152975	36152975	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP2	6502	broad.mit.edu	37	5	36152975	36152975	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SKP2	6502	broad.mit.edu	37	5	36152975	36152975	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44664173	44664173	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44664187	44664187	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44664173	44664173	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A5	57468	broad.mit.edu	37	20	44664187	44664187	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A8	84561	broad.mit.edu	37	3	124802813	124802813	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A8	84561	broad.mit.edu	37	3	124802813	124802813	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC12A8	84561	broad.mit.edu	37	3	124802813	124802813	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43249375	43249375	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43249375	43249375	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC14A2	8170	broad.mit.edu	37	18	43249375	43249375	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22360229	22360229	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A6	57084	broad.mit.edu	37	11	22360229	22360229	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100787050	100787050	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100787050	100787050	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC17A8	246213	broad.mit.edu	37	12	100787050	100787050	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63066947	63066947	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63066947	63066947	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A10	387775	broad.mit.edu	37	11	63066947	63066947	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A12	116085	broad.mit.edu	37	11	64360097	64360097	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC22A12	116085	broad.mit.edu	37	11	64360097	64360097	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC25A18	83733	broad.mit.edu	37	22	18069984	18069984	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92350329	92350329	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92350329	92350329	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC26A7	115111	broad.mit.edu	37	8	92350329	92350329	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86905119	86905119	+	Missense_Mutation	SNP	C	A	A	rs11568388		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86905119	86905119	+	Missense_Mutation	SNP	C	A	A	rs11568388		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86912912	86912912	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86905119	86905119	+	Missense_Mutation	SNP	C	A	A	rs11568388		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC28A3	64078	broad.mit.edu	37	9	86912912	86912912	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A1	6569	broad.mit.edu	37	5	176813237	176813237	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A1	6569	broad.mit.edu	37	5	176813237	176813237	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC34A1	6569	broad.mit.edu	37	5	176813237	176813237	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC36A2	153201	broad.mit.edu	37	5	150719857	150719857	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC38A1	81539	broad.mit.edu	37	12	46596960	46596960	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC3A1	6519	broad.mit.edu	37	2	44502667	44502667	+	5'UTR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A1	23446	broad.mit.edu	37	9	108127811	108127811	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A1	23446	broad.mit.edu	37	9	108127811	108127811	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC44A1	23446	broad.mit.edu	37	9	108127811	108127811	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33954552	33954552	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33954552	33954552	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC45A2	51151	broad.mit.edu	37	5	33954552	33954552	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42340309	42340309	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42340309	42340309	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A1	6521	broad.mit.edu	37	17	42340309	42340309	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220497826	220497826	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC4A3	6508	broad.mit.edu	37	2	220497826	220497826	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC5A9	200010	broad.mit.edu	37	1	48694626	48694626	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A9	6536	broad.mit.edu	37	1	44466749	44466749	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A9	6536	broad.mit.edu	37	1	44466749	44466749	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC6A9	6536	broad.mit.edu	37	1	44466749	44466749	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170218853	170218853	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170218853	170218853	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC7A14	57709	broad.mit.edu	37	3	170218853	170218853	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40655830	40655830	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40655830	40655830	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLC8A1	6546	broad.mit.edu	37	2	40655830	40655830	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2A1	6578	broad.mit.edu	37	3	133692425	133692425	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLCO2A1	6578	broad.mit.edu	37	3	133692425	133692425	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98819969	98819969	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT1	6585	broad.mit.edu	37	10	98819969	98819969	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168093468	168093468	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168201305	168201305	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168093468	168093468	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168201305	168201305	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168093468	168093468	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SLIT3	6586	broad.mit.edu	37	5	168201305	168201305	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47632266	47632266	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCC1	6599	broad.mit.edu	37	3	47632266	47632266	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCD2	6603	broad.mit.edu	37	17	61914346	61914346	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCD2	6603	broad.mit.edu	37	17	61914346	61914346	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMARCD2	6603	broad.mit.edu	37	17	61914346	61914346	+	Frame_Shift_Del	DEL	T	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112356170	112356170	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112356170	112356170	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMC3	9126	broad.mit.edu	37	10	112356170	112356170	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMEK3P	139420	broad.mit.edu	37	X	27480071	27480071	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18844354	18844354	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18844354	18844354	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SMG1	23049	broad.mit.edu	37	16	18844354	18844354	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC4	6621	broad.mit.edu	37	9	139283129	139283129	+	Intron	SNP	G	A	A	rs148085093	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNAPC4	6621	broad.mit.edu	37	9	139283129	139283129	+	Intron	SNP	G	A	A	rs148085093	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNPH	9751	broad.mit.edu	37	20	1286120	1286120	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNPH	9751	broad.mit.edu	37	20	1286120	1286120	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNPH	9751	broad.mit.edu	37	20	1286120	1286120	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51351136	51351136	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51363185	51363185	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51351136	51351136	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51363185	51363185	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51351136	51351136	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SNTG1	54212	broad.mit.edu	37	8	51363185	51363185	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOHLH2	54937	broad.mit.edu	37	13	36743132	36743132	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOHLH2	54937	broad.mit.edu	37	13	36743132	36743132	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SOHLH2	54937	broad.mit.edu	37	13	36743132	36743132	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORBS1	10580	broad.mit.edu	37	10	97131923	97131923	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SORCS2	57537	broad.mit.edu	37	4	7677859	7677859	+	Missense_Mutation	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214162030	214162030	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214162030	214162030	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPAG16	79582	broad.mit.edu	37	2	214162030	214162030	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172643082	172643082	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172643082	172643082	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA16	83893	broad.mit.edu	37	3	172643082	172643082	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52944926	52944926	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52944926	52944926	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA18	132671	broad.mit.edu	37	4	52944926	52944926	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123868550	123868550	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123868550	123868550	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA5	166378	broad.mit.edu	37	4	123868550	123868550	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA8	145946	broad.mit.edu	37	15	97327313	97327313	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPATA8	145946	broad.mit.edu	37	15	97327313	97327313	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIRE2	84501	broad.mit.edu	37	16	89920849	89920849	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPIRE2	84501	broad.mit.edu	37	16	89920849	89920849	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14284462	14284462	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14284462	14284462	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPON1	10418	broad.mit.edu	37	11	14284462	14284462	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158605904	158605904	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158607828	158607828	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158617395	158617395	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158632333	158632333	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158605904	158605904	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158607828	158607828	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158617395	158617395	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158605904	158605904	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158607828	158607828	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158617395	158617395	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SPTA1	6708	broad.mit.edu	37	1	158624560	158624560	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9034826	9034826	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9034826	9034826	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRGAP3	9901	broad.mit.edu	37	3	9034826	9034826	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SRRM5	100170229	broad.mit.edu	37	19	44101381	44101381	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ST3GAL3	6487	broad.mit.edu	37	1	44385984	44385984	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STC2	8614	broad.mit.edu	37	5	172744804	172744804	+	3'UTR	DEL	A	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STC2	8614	broad.mit.edu	37	5	172744804	172744804	+	3'UTR	DEL	A	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STX12	23673	broad.mit.edu	37	1	28099797	28099797	+	5'UTR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120952514	120952514	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120952514	120952514	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
STXBP5L	9515	broad.mit.edu	37	3	120952514	120952514	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	912908	912908	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN1	23353	broad.mit.edu	37	7	912908	912908	+	Nonsense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN3	256979	broad.mit.edu	37	7	48045447	48045448	+	Intron	INS	-	C	C	rs142156983	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31590553	31590553	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SUN5	140732	broad.mit.edu	37	20	31590553	31590553	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152532561	152532561	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152532561	152532561	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNE1	23345	broad.mit.edu	37	6	152532561	152532561	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYNGAP1	8831	broad.mit.edu	37	6	33400564	33400564	+	Nonsense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
SYT3	84258	broad.mit.edu	37	19	51135683	51135683	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1C	9013	broad.mit.edu	37	16	84214845	84214845	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1C	9013	broad.mit.edu	37	16	84214845	84214845	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1C	9013	broad.mit.edu	37	16	84214845	84214845	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32632739	32632739	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32633201	32633201	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32632739	32632739	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32633201	32633201	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32632739	32632739	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TAF1L	138474	broad.mit.edu	37	9	32633201	32633201	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D7	51256	broad.mit.edu	37	6	13321220	13321220	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D7	51256	broad.mit.edu	37	6	13321220	13321220	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBC1D7	51256	broad.mit.edu	37	6	13321220	13321220	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCD	6904	broad.mit.edu	37	17	80726316	80726316	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCD	6904	broad.mit.edu	37	17	80726316	80726316	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBCD	6904	broad.mit.edu	37	17	80726316	80726316	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162274163	162274163	+	Intron	SNP	C	A	A	rs116575379	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162274163	162274163	+	Intron	SNP	C	A	A	rs116575379	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TBR1	10716	broad.mit.edu	37	2	162274163	162274163	+	Intron	SNP	C	A	A	rs116575379	by1000genomes	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152058156	152058156	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152058156	152058156	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TCHHL1	126637	broad.mit.edu	37	1	152058156	152058156	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRD1	56165	broad.mit.edu	37	10	115973156	115973156	+	Missense_Mutation	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TDRKH	11022	broad.mit.edu	37	1	151742560	151742588	+	3'UTR	DEL	GGAGAGGGAGACCATGGGGAGACGGAGAC	-	-	rs140076465	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120983847	120983847	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120983847	120983847	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TECTA	7007	broad.mit.edu	37	11	120983847	120983847	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20837789	20837789	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20837789	20837789	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TEP1	7011	broad.mit.edu	37	14	20837789	20837789	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70405010	70405010	+	Missense_Mutation	SNP	A	G	G	rs77500190		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70405010	70405010	+	Missense_Mutation	SNP	A	G	G	rs77500190		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TET1	80312	broad.mit.edu	37	10	70405010	70405010	+	Missense_Mutation	SNP	A	G	G	rs77500190		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552761	43552761	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552761	43552761	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TGM5	9333	broad.mit.edu	37	15	43552761	43552761	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134042065	134042065	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134042065	134042065	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TG	7038	broad.mit.edu	37	8	134042065	134042065	+	Splice_Site	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THEG	51298	broad.mit.edu	37	19	362338	362338	+	Silent	SNP	G	A	A	rs145779146	byFrequency;by1000genomes	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11486977	11486977	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11486977	11486977	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11466208	11466208	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7A	221981	broad.mit.edu	37	7	11486977	11486977	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137852371	137852371	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137852371	137852371	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
THSD7B	80731	broad.mit.edu	37	2	137852371	137852371	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156376676	156376676	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156376676	156376676	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TIMD4	91937	broad.mit.edu	37	5	156376676	156376676	+	Missense_Mutation	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TINAG	27283	broad.mit.edu	37	6	54191519	54191519	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394546	164394546	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394546	164394546	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TKTL2	84076	broad.mit.edu	37	4	164394546	164394546	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLCD1	116238	broad.mit.edu	37	17	27051724	27051724	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLCD1	116238	broad.mit.edu	37	17	27051724	27051724	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLCD1	116238	broad.mit.edu	37	17	27051724	27051724	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLL2	7093	broad.mit.edu	37	10	98155947	98155947	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476354	120476354	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476354	120476354	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TLR4	7099	broad.mit.edu	37	9	120476354	120476354	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC8	147138	broad.mit.edu	37	17	76135131	76135131	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMC8	147138	broad.mit.edu	37	17	76135131	76135131	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106B	54664	broad.mit.edu	37	7	12270059	12270059	+	Silent	SNP	T	C	C	rs142177964		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106B	54664	broad.mit.edu	37	7	12270059	12270059	+	Silent	SNP	T	C	C	rs142177964		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM106B	54664	broad.mit.edu	37	7	12270059	12270059	+	Silent	SNP	T	C	C	rs142177964		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM132B	114795	broad.mit.edu	37	12	126139128	126139128	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM143	55260	broad.mit.edu	37	19	48845850	48845850	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM184A	202915	broad.mit.edu	37	7	1586653	1586654	+	In_Frame_Ins	INS	-	GCC	GCC	rs140579959	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM208	29100	broad.mit.edu	37	16	67263047	67263047	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12777053	12777053	+	Splice_Site	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12777053	12777053	+	Splice_Site	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM40	55287	broad.mit.edu	37	3	12777053	12777053	+	Splice_Site	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226050438	226050438	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226050438	226050438	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM63A	9725	broad.mit.edu	37	1	226050438	226050438	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM81	388730	broad.mit.edu	37	1	205053311	205053311	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM81	388730	broad.mit.edu	37	1	205053311	205053311	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMEM81	388730	broad.mit.edu	37	1	205053311	205053311	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29659658	29659658	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29659658	29659658	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TMTC1	83857	broad.mit.edu	37	12	29659658	29659658	+	3'UTR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF10C	8794	broad.mit.edu	37	8	22969320	22969320	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11A	8792	broad.mit.edu	37	18	60015426	60015426	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11A	8792	broad.mit.edu	37	18	60015426	60015426	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFRSF11A	8792	broad.mit.edu	37	18	60015426	60015426	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNFSF14	8740	broad.mit.edu	37	19	6664858	6664858	+	3'UTR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9413362	9413362	+	5'Flank	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNKS	8658	broad.mit.edu	37	8	9413362	9413362	+	5'Flank	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT1	7138	broad.mit.edu	37	19	55656723	55656723	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TNNT1	7138	broad.mit.edu	37	19	55656723	55656723	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42697209	42697209	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TOX2	84969	broad.mit.edu	37	20	42697209	42697209	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578556	7578556	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578556	7578556	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TP53	7157	broad.mit.edu	37	17	7578556	7578556	+	Splice_Site	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN2	219931	broad.mit.edu	37	11	68853447	68853447	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPCN2	219931	broad.mit.edu	37	11	68853447	68853447	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1459915	1459915	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1459915	1459915	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1459915	1459915	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPO	7173	broad.mit.edu	37	2	1491645	1491645	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934860	10934860	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934860	10934860	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10934860	10934860	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TPTE	7179	broad.mit.edu	37	21	10936148	10936148	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRANK1	9881	broad.mit.edu	37	3	36896655	36896655	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110099686	110099686	+	5'Flank	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110099686	110099686	+	5'Flank	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRHR	7201	broad.mit.edu	37	8	110099686	110099686	+	5'Flank	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIM69	140691	broad.mit.edu	37	15	45052015	45052015	+	Nonsense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189068316	189068316	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189068316	189068316	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRIML1	339976	broad.mit.edu	37	4	189068316	189068316	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49692405	49692406	+	Intron	DNP	TG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49692405	49692406	+	Intron	DNP	TG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM4	54795	broad.mit.edu	37	19	49692405	49692406	+	Intron	DNP	TG	AT	AT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77419570	77419570	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77419570	77419570	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM6	140803	broad.mit.edu	37	9	77419570	77419570	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234862447	234862447	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TRPM8	79054	broad.mit.edu	37	2	234862447	234862447	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10IP	254187	broad.mit.edu	37	11	65715521	65715521	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA10IP	254187	broad.mit.edu	37	11	65715521	65715521	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130353924	130353924	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130353924	130353924	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSGA13	114960	broad.mit.edu	37	7	130353924	130353924	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSLP	85480	broad.mit.edu	37	5	110407688	110407688	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSLP	85480	broad.mit.edu	37	5	110407688	110407688	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TSLP	85480	broad.mit.edu	37	5	110407688	110407688	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180327803	180327803	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180327803	180327803	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC14	151613	broad.mit.edu	37	3	180327803	180327803	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38501406	38501406	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38501406	38501406	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTC3	7267	broad.mit.edu	37	21	38501406	38501406	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179542347	179542347	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179590784	179590784	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179542347	179542347	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179590784	179590784	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179396279	179396279	+	Silent	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179542347	179542347	+	Splice_Site	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TTN	7273	broad.mit.edu	37	2	179590784	179590784	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37890142	37890142	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37928069	37928069	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37890142	37890142	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37928069	37928069	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37890142	37890142	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TXNDC3	51314	broad.mit.edu	37	7	37928069	37928069	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRP1	7306	broad.mit.edu	37	9	12708116	12708116	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRP1	7306	broad.mit.edu	37	9	12708116	12708116	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYRP1	7306	broad.mit.edu	37	9	12708116	12708116	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88924636	88924636	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88924636	88924636	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
TYR	7299	broad.mit.edu	37	11	88924636	88924636	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D2	7322	broad.mit.edu	37	5	138980095	138980095	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBE2D2	7322	broad.mit.edu	37	5	138980095	138980095	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UBXN2B	137886	broad.mit.edu	37	8	59338446	59338446	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCMA	221044	broad.mit.edu	37	10	13271811	13271811	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UCMA	221044	broad.mit.edu	37	10	13271811	13271811	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A10	54575	broad.mit.edu	37	2	234545808	234545808	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A10	54575	broad.mit.edu	37	2	234545808	234545808	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A10	54575	broad.mit.edu	37	2	234545808	234545808	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A8	54576	broad.mit.edu	37	2	234557064	234557064	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A8	54576	broad.mit.edu	37	2	234557064	234557064	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A8	54576	broad.mit.edu	37	2	234557064	234557064	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT1A8	54576	broad.mit.edu	37	2	234557073	234557073	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70148193	70148193	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70148193	70148193	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UGT2B28	54490	broad.mit.edu	37	4	70148193	70148193	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176301209	176301209	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5A	90249	broad.mit.edu	37	5	176301209	176301209	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96106148	96106148	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96106148	96106148	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UNC5C	8633	broad.mit.edu	37	4	96106148	96106148	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRC2	7385	broad.mit.edu	37	16	21991533	21991533	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRC2	7385	broad.mit.edu	37	16	21991533	21991533	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UQCRC2	7385	broad.mit.edu	37	16	21991533	21991533	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126208253	126208253	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126223026	126223026	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126224959	126224959	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126208253	126208253	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126223026	126223026	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126224959	126224959	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126208253	126208253	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126223026	126223026	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UROC1	131669	broad.mit.edu	37	3	126224959	126224959	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17554815	17554815	+	Silent	SNP	G	T	T	rs121908370		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17554815	17554815	+	Silent	SNP	G	T	T	rs121908370		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH1C	10083	broad.mit.edu	37	11	17554815	17554815	+	Silent	SNP	G	T	T	rs121908370		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216051312	216051312	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216369952	216369952	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216051312	216051312	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216369952	216369952	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216051312	216051312	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USH2A	7399	broad.mit.edu	37	1	216369952	216369952	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP16	10600	broad.mit.edu	37	21	30415863	30415863	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP16	10600	broad.mit.edu	37	21	30415863	30415863	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP16	10600	broad.mit.edu	37	21	30415863	30415863	+	Silent	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP21	27005	broad.mit.edu	37	1	161130698	161130698	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP21	27005	broad.mit.edu	37	1	161130698	161130698	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP21	27005	broad.mit.edu	37	1	161130698	161130698	+	Silent	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
USP33	23032	broad.mit.edu	37	1	78195558	78195558	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101727153	101727153	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTP20	27340	broad.mit.edu	37	12	101727153	101727153	+	Frame_Shift_Del	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144724345	144724345	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144724345	144724345	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
UTRN	7402	broad.mit.edu	37	6	144724345	144724345	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	118339307	118339307	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19026812	19026812	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37233336	37233336	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42400410	42400410	+	IGR	DEL	C	-	-	rs74186261		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	62794577	62794577	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65930651	65930651	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104553083	104553083	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127811642	127811642	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17809506	17809506	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49865549	49865549	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50149423	50149423	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93343250	93343250	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77151589	77151589	+	IGR	SNP	G	A	A	rs145994664	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80422930	80422931	+	IGR	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111591665	111591665	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240728	19240728	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31002655	31002655	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55634961	55634961	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928196	86928196	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90015017	90015017	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101423642	101423642	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443758	19443758	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20264910	20264910	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57508647	57508647	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102369483	102369483	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	29052216	29052216	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84860193	84860193	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84860880	84860880	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	32177847	32177850	+	IGR	DEL	TTGA	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33020991	33020991	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424985	33424985	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33490782	33490782	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33501055	33501055	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11625704	11625704	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14361531	14361531	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29655957	29655957	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57683935	57683935	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16100826	16100826	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22500229	22500229	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	42341081	42341081	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	46640285	46640285	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53336900	53336900	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065304	149065304	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149096293	149096293	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165991584	165991584	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	176242497	176242497	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	207355974	207355974	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247655442	247655442	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11589188	11589188	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11589192	11589192	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40627143	40627143	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14900253	14900253	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15384119	15384119	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9590221	9590221	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16350096	16350096	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16405052	16405052	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	50152313	50152313	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106986359	106986359	+	IGR	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130751033	130751033	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139660043	139660043	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	162135461	162135462	+	IGR	INS	-	CCC	CCC	rs79614804	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17465590	17465590	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229217366	229217366	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	30546284	30546284	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424954	81424954	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	107046816	107046816	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856773	82856773	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069239	96069239	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96285399	96285399	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135865639	135865639	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137277029	137277029	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	149447639	149447639	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	49644696	49644697	+	IGR	INS	-	AACGA	AACGA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216658	64216658	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69652901	69652901	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70304052	70304052	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107929727	107929727	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	53100804	53100804	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80774023	80774023	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87607178	87607178	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109638860	109638860	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131347543	131347543	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399454	136399455	+	IGR	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	139187504	139187504	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141563091	141563091	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48942455	48942455	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53071106	53071106	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56978324	56978324	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57215758	57215758	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216315	57216315	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216953	57216953	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62941288	62941288	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033798	63033798	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033868	63033868	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894571	63894571	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	6971407	6971408	+	IGR	INS	-	C	C	rs113577663		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29490152	29490152	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43125335	43125335	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43298138	43298138	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74128324	74128324	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689758	30689758	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357607	68357608	+	IGR	DNP	TG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7598033	7598033	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261926	127261926	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261991	127261991	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811369	134811369	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811541	134811541	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135160109	135160109	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701478	145701478	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3871168	3871168	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49397953	49397953	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65296078	65296078	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829813	79829813	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89295509	89295509	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	118339307	118339307	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19026812	19026812	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37233336	37233336	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	42385707	42385722	+	IGR	DEL	AATGGAATCATCATTA	-	-	rs33914712		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	62794577	62794577	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65930651	65930651	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104553083	104553083	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113662329	113662329	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127811642	127811642	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	17809506	17809506	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49865549	49865549	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50149423	50149423	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93343250	93343250	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	105371068	105371068	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	33452396	33452397	+	IGR	INS	-	AAGG	AAGG	rs143444187	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77151589	77151589	+	IGR	SNP	G	A	A	rs145994664	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80422930	80422931	+	IGR	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111591665	111591665	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	19240728	19240728	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31002655	31002655	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55634961	55634961	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928196	86928196	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90015017	90015017	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101423642	101423642	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443758	19443758	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20264910	20264910	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57508647	57508647	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102369483	102369483	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	29052216	29052216	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	84860880	84860880	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20607139	20607139	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33020991	33020991	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424985	33424985	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33490782	33490782	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33501055	33501055	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33573795	33573795	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	78083666	78083666	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11625704	11625704	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	14361531	14361531	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29655957	29655957	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57683935	57683935	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	68893411	68893411	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16100826	16100826	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22500229	22500229	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	42341081	42341081	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43158339	43158339	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	46640285	46640285	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53336900	53336900	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	11407660	11407660	+	IGR	SNP	T	C	C	rs150721014	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065304	149065304	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149096293	149096293	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165991584	165991584	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	176242497	176242497	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	207355974	207355974	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247655442	247655442	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	30196408	30196408	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11589188	11589188	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11589192	11589192	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40627143	40627143	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14900253	14900253	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15384119	15384119	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	9590221	9590221	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16350096	16350096	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	16405052	16405052	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	50152313	50152313	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106986359	106986359	+	IGR	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130751033	130751033	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139660043	139660043	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17465590	17465590	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229217366	229217366	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	30546284	30546284	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424954	81424954	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	107046816	107046816	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186421087	186421087	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856773	82856773	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069239	96069239	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96285399	96285399	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135865639	135865639	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137277029	137277029	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	149447639	149447639	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216658	64216658	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69652901	69652901	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70304052	70304052	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107929727	107929727	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172403182	172403182	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50571108	50571108	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	84845960	84845960	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	53100804	53100804	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80774023	80774023	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87607178	87607178	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109638860	109638860	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124121006	124121006	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	131347543	131347543	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399454	136399455	+	IGR	DNP	CC	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	139187504	139187504	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141563091	141563091	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39836196	39836196	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48942455	48942455	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53071106	53071106	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56431924	56431924	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56978324	56978324	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57215758	57215758	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216315	57216315	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216953	57216953	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033798	63033798	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63033868	63033868	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894571	63894571	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	64030152	64030152	+	IGR	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29490152	29490152	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43125335	43125335	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43298138	43298138	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74128324	74128324	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	29824609	29824609	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689758	30689758	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357607	68357608	+	IGR	DNP	TG	AT	AT			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7598033	7598033	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261926	127261926	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261991	127261991	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811369	134811369	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811541	134811541	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135160109	135160109	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701478	145701478	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3871168	3871168	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49397953	49397953	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65296078	65296078	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829813	79829813	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89295509	89295509	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	19026812	19026812	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	37233336	37233336	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	57427742	57427742	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	65930651	65930651	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	104553083	104553083	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	113662329	113662329	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	127811642	127811642	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	26067547	26067547	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	3436185	3436185	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49123014	49123014	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	49865549	49865549	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	50149423	50149423	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55199718	55199718	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55494499	55494499	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	55783187	55783187	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	56247281	56247281	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	57684860	57684860	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	58660491	58660491	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	6007083	6007083	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	89631188	89631188	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	93343250	93343250	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	11	98800322	98800322	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	15956866	15956866	+	IGR	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	18065696	18065696	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	30700646	30700646	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	38472023	38472023	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	77151589	77151589	+	IGR	SNP	G	A	A	rs145994664	by1000genomes	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	80422930	80422931	+	IGR	DNP	CC	AA	AA			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	84842582	84842582	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	12	88344609	88344609	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	111591665	111591665	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	31002655	31002655	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	55634961	55634961	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	75404271	75404271	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	86928196	86928196	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	13	90015017	90015017	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	101423642	101423642	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19443758	19443758	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	19851004	19851004	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20148057	20148057	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	20264910	20264910	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	29142788	29142788	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	57508647	57508647	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	102369483	102369483	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	29052216	29052216	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	35142365	35142365	+	IGR	SNP	C	A	A	rs112628261		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	20607139	20607139	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33020991	33020991	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33424985	33424985	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	33490782	33490782	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	11625704	11625704	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	29655957	29655957	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	18	57445725	57445725	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	16100826	16100826	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	43158339	43158339	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	46640285	46640285	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	53336900	53336900	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	104696420	104696420	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	147288036	147288036	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149042095	149042095	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149065304	149065304	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	149096293	149096293	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	165991584	165991584	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	170084867	170084867	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	176242497	176242497	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	192216728	192216728	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	207355974	207355974	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	1	247655442	247655442	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11589188	11589188	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	11589192	11589192	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	4005052	4005052	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	20	40627143	40627143	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	14900253	14900253	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	21	15384119	15384119	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	29806107	29806107	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	22	34985823	34985823	+	IGR	DEL	C	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	102137948	102137948	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	106986359	106986359	+	IGR	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	117938390	117938390	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	130751033	130751033	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	139660043	139660043	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	143612486	143612486	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	17465590	17465590	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	199700401	199700401	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	229217366	229217366	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	30546284	30546284	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	76485150	76485150	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81424954	81424954	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	81427445	81427445	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800363	91800363	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	91800524	91800524	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	107046816	107046816	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	149474736	149474736	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	166409029	166409029	+	IGR	DEL	C	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	175786389	175786389	+	IGR	DEL	G	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	186421087	186421087	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	82856773	82856773	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96069239	96069239	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	96285399	96285399	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	10480415	10480415	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	131425254	131425254	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	135865639	135865639	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	137277029	137277029	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	149447639	149447639	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	64216658	64216658	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69159739	69159739	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69159741	69159741	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69652843	69652843	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	69652901	69652901	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70116536	70116536	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	70304052	70304052	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	107929727	107929727	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	120952436	120952436	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	12214184	12214184	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	154871316	154871316	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	172403182	172403182	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	17747758	17747758	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	180409290	180409290	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	36071986	36071987	+	IGR	DNP	CC	AT	AT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	50571108	50571108	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	5	6791230	6791230	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	122179787	122179787	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	49326457	49326457	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	53100804	53100804	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	80774023	80774023	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	6	87607178	87607178	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	109638860	109638860	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124121006	124121006	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	134419775	134419775	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	136399454	136399455	+	IGR	DNP	CC	AA	AA			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	139187504	139187504	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	141563091	141563091	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39836196	39836196	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	39876410	39876410	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	48942455	48942455	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53071106	53071106	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	53189307	53189307	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	55724580	55724580	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	56978324	56978324	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57215758	57215758	+	IGR	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216315	57216315	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	57216953	57216953	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	62941288	62941288	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	63894571	63894571	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	83292837	83292837	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	29490152	29490152	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	43298138	43298138	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	5334238	5334238	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	74128324	74128324	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	76214681	76214681	+	IGR	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	85074904	85074904	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	8	97471435	97471435	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	141036010	141036010	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	30689758	30689758	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	43314499	43314499	+	IGR	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	68357607	68357608	+	IGR	DNP	TG	AT	AT			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	7598033	7598033	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	120002520	120002520	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261926	127261926	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	127261991	127261991	+	IGR	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811369	134811369	+	IGR	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	134811541	134811541	+	IGR	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	135160109	135160109	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	145701478	145701478	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	36981405	36981405	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	3871168	3871168	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	49397953	49397953	+	IGR	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	65296078	65296078	+	IGR	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	79829813	79829813	+	IGR	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	86170442	86170442	+	IGR	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	X	89295509	89295509	+	IGR	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77918709	77918709	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77918709	77918709	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VAT1L	57687	broad.mit.edu	37	16	77918709	77918709	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177648850	177648850	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177648850	177648850	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VEGFC	7424	broad.mit.edu	37	4	177648850	177648850	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87018101	87018101	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87018101	87018101	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VGLL3	389136	broad.mit.edu	37	3	87018101	87018101	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VILL	50853	broad.mit.edu	37	3	38040837	38040837	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VILL	50853	broad.mit.edu	37	3	38040837	38040837	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VLDLR	7436	broad.mit.edu	37	9	2651657	2651657	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS11	55823	broad.mit.edu	37	11	118942726	118942726	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS11	55823	broad.mit.edu	37	11	118942726	118942726	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100246377	100246377	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13B	157680	broad.mit.edu	37	8	100246377	100246377	+	Intron	DEL	G	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12460230	12460230	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12460230	12460230	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS13D	55187	broad.mit.edu	37	1	12460230	12460230	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134109794	134109794	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134109794	134109794	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
VPS26B	112936	broad.mit.edu	37	11	134109794	134109794	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WBP2NL	164684	broad.mit.edu	37	22	42209752	42209752	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9538670	9538670	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9538670	9538670	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR16	146845	broad.mit.edu	37	17	9538670	9538670	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR43	23160	broad.mit.edu	37	2	29165340	29165340	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR43	23160	broad.mit.edu	37	2	29165340	29165340	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR54	84058	broad.mit.edu	37	2	74650852	74650852	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR54	84058	broad.mit.edu	37	2	74650852	74650852	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR54	84058	broad.mit.edu	37	2	74650852	74650852	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR5	11091	broad.mit.edu	37	9	137021720	137021720	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR5	11091	broad.mit.edu	37	9	137021720	137021720	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR5	11091	broad.mit.edu	37	9	137021720	137021720	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR60	55112	broad.mit.edu	37	7	158679866	158679866	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR60	55112	broad.mit.edu	37	7	158679866	158679866	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR60	55112	broad.mit.edu	37	7	158679866	158679866	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36594886	36594886	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR62	284403	broad.mit.edu	37	19	36594886	36594886	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54353141	54353141	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54446658	54446658	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54694337	54694337	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54353141	54353141	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54446658	54446658	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54694337	54694337	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54353141	54353141	+	Intron	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54446658	54446658	+	Intron	SNP	A	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
WDR7	23335	broad.mit.edu	37	18	54694337	54694337	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10755798	10755798	+	Silent	SNP	C	A	A	rs61745501	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10892674	10892674	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10755798	10755798	+	Silent	SNP	C	A	A	rs61745501	byFrequency	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10892674	10892674	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10755798	10755798	+	Silent	SNP	C	A	A	rs61745501	byFrequency	TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR6	286046	broad.mit.edu	37	8	10892674	10892674	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30585000	30585000	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30585000	30585000	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XKR7	343702	broad.mit.edu	37	20	30585000	30585000	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
XRCC2	7516	broad.mit.edu	37	7	152373298	152373298	+	5'Flank	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H11A	9877	broad.mit.edu	37	1	203821496	203821496	+	Missense_Mutation	SNP	T	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H11A	9877	broad.mit.edu	37	1	203821508	203821508	+	Nonsense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H6	376940	broad.mit.edu	37	2	113082754	113082754	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H6	376940	broad.mit.edu	37	2	113082754	113082754	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZC3H6	376940	broad.mit.edu	37	2	113082754	113082754	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698533	111698533	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698533	111698533	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC16	340595	broad.mit.edu	37	X	111698533	111698533	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37126597	37126597	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37126597	37126597	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZCCHC7	84186	broad.mit.edu	37	9	37126597	37126597	+	Nonsense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZG16B	124220	broad.mit.edu	37	16	2882139	2882139	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZG16B	124220	broad.mit.edu	37	16	2882139	2882139	+	Frame_Shift_Del	DEL	A	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147128282	147128282	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147128284	147128284	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147128282	147128282	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC1	7545	broad.mit.edu	37	3	147128284	147128284	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC2	7546	broad.mit.edu	37	13	100637593	100637593	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZIC2	7546	broad.mit.edu	37	13	100637593	100637593	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZMAT5	55954	broad.mit.edu	37	22	30134177	30134177	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58579729	58579730	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58579729	58579730	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF135	7694	broad.mit.edu	37	19	58579729	58579730	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22155180	22155180	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22155180	22155180	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF208	7757	broad.mit.edu	37	19	22155180	22155180	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74536211	74536211	+	5'UTR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74536211	74536211	+	5'UTR	SNP	A	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74624443	74624443	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF236	7776	broad.mit.edu	37	18	74536211	74536211	+	5'UTR	SNP	A	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF275	10838	broad.mit.edu	37	X	152611179	152611217	+	Intron	DEL	AGGTTAGGGTTGGGGGTCCCAGCTGAGCTCTTGGAGTTG	-	-	rs68194402	by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF326	284695	broad.mit.edu	37	1	90470716	90470716	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF326	284695	broad.mit.edu	37	1	90470716	90470716	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF326	284695	broad.mit.edu	37	1	90470716	90470716	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF365	22891	broad.mit.edu	37	10	64383031	64383031	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49559249	49559249	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49669923	49669923	+	Frame_Shift_Del	DEL	G	-	-	rs111229124	byFrequency;by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49559249	49559249	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49669923	49669923	+	Frame_Shift_Del	DEL	G	-	-	rs111229124	byFrequency;by1000genomes	TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF423	23090	broad.mit.edu	37	16	49559249	49559249	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF432	9668	broad.mit.edu	37	19	52538783	52538783	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF432	9668	broad.mit.edu	37	19	52538783	52538783	+	Intron	SNP	T	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF570	148268	broad.mit.edu	37	19	37967372	37967372	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF579	163033	broad.mit.edu	37	19	56090015	56090015	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF579	163033	broad.mit.edu	37	19	56090015	56090015	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF607	84775	broad.mit.edu	37	19	38198822	38198822	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64821522	64821522	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64821522	64821522	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF609	23060	broad.mit.edu	37	15	64821522	64821522	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208882	53208882	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208882	53208882	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF611	81856	broad.mit.edu	37	19	53208882	53208882	+	Missense_Mutation	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF621	285268	broad.mit.edu	37	3	40573808	40573808	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF621	285268	broad.mit.edu	37	3	40573808	40573808	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF621	285268	broad.mit.edu	37	3	40573808	40573808	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56954088	56954088	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56954088	56954088	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF667	63934	broad.mit.edu	37	19	56954088	56954088	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF680	340252	broad.mit.edu	37	7	64004155	64004155	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF680	340252	broad.mit.edu	37	7	64004155	64004155	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF680	340252	broad.mit.edu	37	7	64004155	64004155	+	Silent	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53472546	53472546	+	RNA	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53472546	53472546	+	RNA	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF702P	79986	broad.mit.edu	37	19	53472546	53472546	+	RNA	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF705D	728957	broad.mit.edu	37	8	11970596	11970596	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF705D	728957	broad.mit.edu	37	8	11970596	11970596	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF705D	728957	broad.mit.edu	37	8	11970596	11970596	+	Missense_Mutation	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146823920	146823920	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146823920	146823920	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF827	152485	broad.mit.edu	37	4	146823920	146823920	+	Missense_Mutation	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF835	90485	broad.mit.edu	37	19	57184254	57184254	+	5'Flank	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF845	91664	broad.mit.edu	37	19	53854476	53854476	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF845	91664	broad.mit.edu	37	19	53854476	53854476	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF845	91664	broad.mit.edu	37	19	53854476	53854476	+	Missense_Mutation	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23543836	23543837	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23543836	23543837	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF91	7644	broad.mit.edu	37	19	23543836	23543837	+	Frame_Shift_Del	DEL	TA	-	-			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941575	22941575	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941575	22941575	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNF99	7652	broad.mit.edu	37	19	22941575	22941575	+	Missense_Mutation	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT1	10467	broad.mit.edu	37	7	100866097	100866097	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT1	10467	broad.mit.edu	37	7	100866097	100866097	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZNHIT1	10467	broad.mit.edu	37	7	100866097	100866097	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58556366	58556366	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
ZSCAN1	284312	broad.mit.edu	37	19	58556366	58556366	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131905871	131905871	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	14	22409518	22409523	+	Intron	DEL	TCTCTC	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25431009	25431009	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	15023271	15023271	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29107532	29107532	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89185128	89185128	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89442329	89442329	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89495712	89495712	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90007691	90007692	+	Intron	INS	-	C	C	rs365372		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044518	90044518	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90078030	90078030	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90414204	90414204	+	Intron	DEL	C	-	-			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90458203	90458203	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96579878	96579878	+	RNA	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85166545	85166545	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100606797	100606797	+	RNA	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38380548	38380548	+	5'Flank	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90745717	90745717	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90746009	90746009	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90747954	90747954	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-11A-01D-1553-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131905871	131905871	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	15	25431009	25431009	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	15023271	15023271	+	Silent	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29107532	29107532	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	22783271	22783271	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89185128	89185128	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89442329	89442329	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89495712	89495712	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90007691	90007692	+	Intron	INS	-	C	C	rs365372		TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044518	90044518	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90078030	90078030	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90259525	90259525	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90458203	90458203	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	96579878	96579878	+	RNA	SNP	C	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85166545	85166545	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100606797	100606797	+	RNA	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38380548	38380548	+	5'Flank	SNP	A	C	C			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90745717	90745717	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90746009	90746009	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90747954	90747954	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01D-0969-08	TCGA-44-2659-10A-01D-0969-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	131905871	131905871	+	Intron	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	10	30980248	30980248	+	5'Flank	SNP	C	G	G			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	28514987	28514987	+	Intron	SNP	C	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	16	29107532	29107532	+	Intron	SNP	T	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	19	29215153	29215153	+	RNA	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89185128	89185128	+	Intron	SNP	G	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89442329	89442329	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	89495712	89495712	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90007691	90007692	+	Intron	INS	-	C	C	rs365372		TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90044518	90044518	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	2	90078030	90078030	+	RNA	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180538352	180538352	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	3	180539331	180539331	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	100026327	100026327	+	Intron	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	4	85166545	85166545	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	100606797	100606797	+	RNA	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	124116920	124116920	+	Missense_Mutation	SNP	G	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	142468139	142468139	+	Intron	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	7	38380548	38380548	+	5'Flank	SNP	A	C	C			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90745717	90745717	+	Silent	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90746009	90746009	+	Missense_Mutation	SNP	G	T	T			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
Unknown	0	broad.mit.edu	37	9	90747954	90747954	+	Intron	SNP	C	A	A			TCGA-44-2659-01A-01W-0928-08	TCGA-44-2659-10A-01W-0928-08			NA	NA	NA	NA			Somatic	Phase_I	Capture	NA	NA	NA	Illumina GAIIx
