Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	dataset	type	classification	start	end	gene	chr	ref_allele	tum_allele1	tum_allele2	context
NOC2L	26155	broad.mit.edu	36	1	882497	882497	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	882497	882497	NOC2L	1	A	A	G	11
NUDC	10726	broad.mit.edu	36	1	27140889	27140889	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	27140889	27140889	NUDC	1	G	G	A	43
COL16A1	1307	broad.mit.edu	36	1	31929813	31929813	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	31929813	31929813	COL16A1	1	G	G	T	33
ST3GAL3	6487	broad.mit.edu	36	1	44168413	44168413	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	44168413	44168413	ST3GAL3	1	G	G	A	37
CDC7	8317	broad.mit.edu	36	1	91746068	91746068	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	91746068	91746068	CDC7	1	A	A	G	10
ARHGAP21	57584	broad.mit.edu	36	10	24949169	24949169	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	24949169	24949169	ARHGAP21	10	C	C	G	31
DNMBP	23268	broad.mit.edu	36	10	101649751	101649751	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	101649751	101649751	DNMBP	10	G	G	T	45
C10orf79	80217	broad.mit.edu	36	10	105910856	105910856	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	105910856	105910856	C10orf79	10	C	C	T	32
KIF18A	81930	broad.mit.edu	36	11	28001961	28001961	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	28001961	28001961	KIF18A	11	G	G	C	48
TTC17	55761	broad.mit.edu	36	11	43385634	43385634	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	43385634	43385634	TTC17	11	G	G	C	45
SSSCA1	10534	broad.mit.edu	36	11	65094555	65094555	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	65094555	65094555	SSSCA1	11	C	C	A	28
TRPC6	7225	broad.mit.edu	36	11	100880101	100880101	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	100880101	100880101	TRPC6	11	G	G	T	41
USP2	9099	broad.mit.edu	36	11	118733205	118733205	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	118733205	118733205	USP2	11	G	G	A	40
ZBTB44	29068	broad.mit.edu	36	11	129635972	129635972	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129635972	129635972	ZBTB44	11	G	G	A	33
PRMT8	56341	broad.mit.edu	36	12	3572531	3572531	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	3572531	3572531	PRMT8	12	C	C	T	18
SLC39A5	283375	broad.mit.edu	36	12	54916704	54916704	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	54916704	54916704	SLC39A5	12	G	G	A	35
PIWIL1	9271	broad.mit.edu	36	12	129397538	129397538	+	Missense_Mutation	SNP	T	T	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129397538	129397538	PIWIL1	12	T	T	A	60
RBM25	58517	broad.mit.edu	36	14	72648087	72648087	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	72648087	72648087	RBM25	14	G	G	A	40
OR4N4	283694	broad.mit.edu	36	15	19883887	19883887	+	Silent	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	19883887	19883887	OR4N4	15	G	G	C	45
MGA	23269	broad.mit.edu	36	15	39828855	39828855	+	Missense_Mutation	SNP	A	A	G	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	39828855	39828855	MGA	15	A	A	G	2
SPTBN5	51332	broad.mit.edu	36	15	39955714	39955715	+	Missense_Mutation	DNP	CA	CA	TT	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	DNP	39955714	39955715	SPTBN5	15	CA	CA	TT	25
ZNF48	197407	broad.mit.edu	36	16	30316593	30316593	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30316593	30316593	ZNF48	16	C	C	A	26
TP53	7157	broad.mit.edu	36	17	7518276	7518276	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	7518276	7518276	TP53	17	C	C	A	22
STAT5B	6777	broad.mit.edu	36	17	37613252	37613252	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	37613252	37613252	STAT5B	17	G	G	C	33
ATP8B1	5205	broad.mit.edu	36	18	53506591	53506591	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	53506591	53506591	ATP8B1	18	G	G	A	40
LONP1	9361	broad.mit.edu	36	19	5651873	5651873	+	Missense_Mutation	SNP	A	A	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	5651873	5651873	LONP1	19	A	A	T	7
PIK3R2	5296	broad.mit.edu	36	19	18137981	18137981	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	18137981	18137981	PIK3R2	19	G	G	A	45
IL4I1	259307	broad.mit.edu	36	19	55091074	55091074	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	55091074	55091074	IL4I1	19	G	G	C	41
PPP2R1A	5518	broad.mit.edu	36	19	57407794	57407794	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	57407794	57407794	PPP2R1A	19	C	C	T	27
YIPF4	84272	broad.mit.edu	36	2	32370801	32370801	+	Silent	SNP	T	T	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	32370801	32370801	YIPF4	2	T	T	C	64
SNRNP200	23020	broad.mit.edu	36	2	96312785	96312785	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	96312785	96312785	SNRNP200	2	G	G	A	39
IL18R1	8809	broad.mit.edu	36	2	102379668	102379668	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102379668	102379668	IL18R1	2	C	C	G	32
GRB14	2888	broad.mit.edu	36	2	165057912	165057912	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	165057912	165057912	GRB14	2	G	G	A	48
CCDC141	285025	broad.mit.edu	36	2	179410662	179410662	+	Silent	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	179410662	179410662	CCDC141	2	G	G	A	36
LANCL1	10314	broad.mit.edu	36	2	211007490	211007490	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	211007490	211007490	LANCL1	2	G	G	A	43
OR6B3	150681	broad.mit.edu	36	2	240634001	240634001	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	240634001	240634001	OR6B3	2	G	G	T	43
ANO7	50636	broad.mit.edu	36	2	241798559	241798559	+	Missense_Mutation	SNP	T	T	G	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	241798559	241798559	ANO7	2	T	T	G	54
VSTM2L	128434	broad.mit.edu	36	20	36005858	36005858	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	36005858	36005858	VSTM2L	20	C	C	T	19
KRTAP13-1	140258	broad.mit.edu	36	21	30690461	30690461	+	Missense_Mutation	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	30690461	30690461	KRTAP13-1	21	G	G	T	34
MN1	4330	broad.mit.edu	36	22	26524044	26524044	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	26524044	26524044	MN1	22	T	T	C	59
MYH9	4627	broad.mit.edu	36	22	35026157	35026157	+	Nonsense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Nonsense_Mutation	SNP	35026157	35026157	MYH9	22	G	G	A	46
C4orf44	345222	broad.mit.edu	36	4	3224946	3224946	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	3224946	3224946	C4orf44	4	G	G	A	37
PPP2R2C	5522	broad.mit.edu	36	4	6425167	6425167	+	Silent	SNP	G	G	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	6425167	6425167	PPP2R2C	4	G	G	T	45
DNAH5	1767	broad.mit.edu	36	5	13823873	13823873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	13823873	13823873	DNAH5	5	C	C	T	23
GIN1	54826	broad.mit.edu	36	5	102451740	102451740	+	Missense_Mutation	SNP	C	C	G	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	102451740	102451740	GIN1	5	C	C	G	32
SLC23A1	9963	broad.mit.edu	36	5	138746824	138746824	+	Missense_Mutation	SNP	G	G	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	138746824	138746824	SLC23A1	5	G	G	C	44
PCDHB3	56132	broad.mit.edu	36	5	140461793	140461793	+	Missense_Mutation	SNP	T	T	C	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	140461793	140461793	PCDHB3	5	T	T	C	62
FCHSD1	89848	broad.mit.edu	36	5	141001279	141001279	+	Silent	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Silent	SNP	141001279	141001279	FCHSD1	5	C	C	T	23
RANBP6	26953	broad.mit.edu	36	9	6003873	6003873	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	6003873	6003873	RANBP6	9	C	C	T	30
FIGF	2277	broad.mit.edu	36	X	15286135	15286135	+	Missense_Mutation	SNP	G	G	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	15286135	15286135	FIGF	23	G	G	A	43
CNKSR2	22866	broad.mit.edu	36	X	21537357	21537357	+	Missense_Mutation	SNP	C	C	T	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	21537357	21537357	CNKSR2	23	C	C	T	27
SLC25A14	9016	broad.mit.edu	36	X	129306840	129306840	+	Missense_Mutation	SNP	C	C	A	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	x	x	---			x	Broad	Missense_Mutation	SNP	129306840	129306840	SLC25A14	23	C	C	A	21
FOXN4	121643	broad.mit.edu	36	12	108202014	108202022	+	In_Frame_Del	DEL	GGGTTAGGC	-	GGGTTAGGC	novel	Unknown	TCGA-61-2111-01	TCGA-61-2111-11							Unknown	Unknown	Unknown	Phase_I	Capture	---			Illumina GAIIx	Broad	In_Frame_Del	DEL	108202014	108202022	FOXN4	12	GGGTTAGGC	-	GGGTTAGGC	43
