Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	filter
PRDM16	63976	broad.mit.edu	37	1	3334561	3334561	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:3334561G>A	uc001akf.2	+	11	2941	c.2861G>A	c.(2860-2862)AGG>AAG	p.R954K	PRDM16_uc001akc.2_Missense_Mutation_p.R953K|PRDM16_uc001akd.2_Missense_Mutation_p.R953K|PRDM16_uc001ake.2_Missense_Mutation_p.R954K|PRDM16_uc009vlh.2_Missense_Mutation_p.R654K	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	954	Mediates interaction with SKI and regulation of TGF-beta signaling.|C2H2-type 8.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		TACACGTGCAGGTGAGGGGCC	0.652			T	EVI1	MDS|AML								9	15	---	---	---	---	PASS
SLC25A33	84275	broad.mit.edu	37	1	9613784	9613784	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:9613784C>G	uc001apw.2	+	2	380	c.157C>G	c.(157-159)CAG>GAG	p.Q53E	SLC25A33_uc001apx.2_5'UTR	NM_032315	NP_115691	Q9BSK2	S2533_HUMAN	mitochondrial carrier protein MGC4399	53	Helical; Name=2; (Potential).|Solcar 1.				transport	integral to membrane|mitochondrial inner membrane					0	all_lung(157;0.246)	all_epithelial(116;1.16e-18)|all_lung(118;2.44e-05)|Lung NSC(185;4.08e-05)|Renal(390;0.000147)|Breast(348;0.00191)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.01e-08)|COAD - Colon adenocarcinoma(227;1.44e-05)|Kidney(185;0.000262)|KIRC - Kidney renal clear cell carcinoma(229;0.000957)|BRCA - Breast invasive adenocarcinoma(304;0.0019)|STAD - Stomach adenocarcinoma(132;0.00355)|READ - Rectum adenocarcinoma(331;0.0419)		CTACTATCCTCAGGTTCATCT	0.478													17	38	---	---	---	---	PASS
VPS13D	55187	broad.mit.edu	37	1	12409360	12409360	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:12409360G>A	uc001atv.2	+	46	9501	c.9360G>A	c.(9358-9360)GTG>GTA	p.V3120V	VPS13D_uc001atw.2_Silent_p.V3095V|VPS13D_uc001atx.2_Silent_p.V2307V	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	3119					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CCAATGTAGTGAAGACTGCAG	0.468													30	76	---	---	---	---	PASS
PQLC2	54896	broad.mit.edu	37	1	19652073	19652073	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:19652073C>A	uc001bby.2	+	5	731	c.379C>A	c.(379-381)CTG>ATG	p.L127M	PQLC2_uc001bbz.2_Missense_Mutation_p.L62M|PQLC2_uc001bca.2_Missense_Mutation_p.L127M|PQLC2_uc001bcb.2_Missense_Mutation_p.L16M|PQLC2_uc001bcc.2_Missense_Mutation_p.L16M	NM_017765	NP_060235	Q6ZP29	PQLC2_HUMAN	PQ loop repeat containing 2 isoform 1	127	Cytoplasmic (Potential).					integral to membrane					0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000321)|Lung NSC(340;0.000398)|Breast(348;0.00049)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00466)|BRCA - Breast invasive adenocarcinoma(304;1.89e-05)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.00124)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GCGCCCCTCTCTGTGTGAGTA	0.557													5	34	---	---	---	---	PASS
UBXN10	127733	broad.mit.edu	37	1	20517269	20517269	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:20517269A>G	uc001bdb.2	+	2	299	c.215A>G	c.(214-216)TAT>TGT	p.Y72C		NM_152376	NP_689589	Q96LJ8	UBX10_HUMAN	UBX domain protein 10	72										ovary(1)	1						GCCATTCCCTATGAGTTGCCA	0.567													27	52	---	---	---	---	PASS
RPS8	6202	broad.mit.edu	37	1	45242381	45242381	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:45242381G>T	uc001cmi.2	+	3	169	c.146G>T	c.(145-147)CGG>CTG	p.R49L	SNORD38A_uc009vxi.2_5'Flank|SNORD38B_uc001cml.2_5'Flank	NM_001012	NP_001003	P62241	RS8_HUMAN	ribosomal protein S8	49					endocrine pancreas development|maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|structural constituent of ribosome			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					GTCCGTGTGCGGGGAGGTAAC	0.567													11	23	---	---	---	---	PASS
POMGNT1	55624	broad.mit.edu	37	1	46660018	46660018	+	Nonsense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:46660018G>T	uc001cpe.2	-	9	971	c.807C>A	c.(805-807)TGC>TGA	p.C269*	POMGNT1_uc010olx.1_Nonsense_Mutation_p.C247*|POMGNT1_uc010oly.1_RNA|POMGNT1_uc010olz.1_Nonsense_Mutation_p.C126*|POMGNT1_uc001cpg.2_Nonsense_Mutation_p.C269*|POMGNT1_uc001cpf.2_5'UTR|POMGNT1_uc001cph.1_5'Flank|POMGNT1_uc001cpi.1_5'Flank	NM_017739	NP_060209	Q8WZA1	PMGT1_HUMAN	O-linked mannose	269	Lumenal (Potential).		C -> Y (in MDDGA3; specific activity abolished of the membrane bound form but not the soluble form).		protein N-linked glycosylation|protein O-linked glycosylation	Golgi membrane|integral to membrane|microsome	alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity|beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,3-N-acetylglucosaminyltransferase activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					CAACTTTGCTGCAGAAGCGCC	0.602													9	23	---	---	---	---	PASS
BSND	7809	broad.mit.edu	37	1	55474046	55474046	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:55474046C>G	uc001cye.2	+	4	951	c.708C>G	c.(706-708)GAC>GAG	p.D236E		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	236	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						GCCCGCTGGACCGCTTCCAAG	0.597													6	19	---	---	---	---	PASS
C1orf173	127254	broad.mit.edu	37	1	75037757	75037757	+	Nonsense_Mutation	SNP	C	A	A	rs143506603		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:75037757C>A	uc001dgg.2	-	14	3856	c.3637G>T	c.(3637-3639)GAG>TAG	p.E1213*		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1213	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AAGGCCCCCTCTCCATCTTGG	0.602													21	35	---	---	---	---	PASS
C1orf173	127254	broad.mit.edu	37	1	75038942	75038942	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:75038942G>T	uc001dgg.2	-	14	2671	c.2452C>A	c.(2452-2454)CAG>AAG	p.Q818K		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	818	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AATTCTGGCTGCTCTGCTGTT	0.552													18	67	---	---	---	---	PASS
PIGK	10026	broad.mit.edu	37	1	77620189	77620189	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:77620189C>G	uc001dhk.2	-	9	976	c.931G>C	c.(931-933)GAA>CAA	p.E311Q	PIGK_uc010orj.1_Missense_Mutation_p.E235Q|PIGK_uc009wbx.2_Missense_Mutation_p.E217Q|PIGK_uc001dhl.1_Missense_Mutation_p.E311Q	NM_005482	NP_005473	Q92643	GPI8_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	311	Lumenal (Potential).|Essential for GPI attachment.			Missing: Loss of activity.	attachment of GPI anchor to protein|C-terminal protein lipidation|protein thiol-disulfide exchange|proteolysis	GPI-anchor transamidase complex	cysteine-type endopeptidase activity|GPI-anchor transamidase activity|protein binding			ovary(2)|pancreas(1)	3						GTTGTAATTTCCACTTTCCGT	0.363													11	25	---	---	---	---	PASS
MCOLN3	55283	broad.mit.edu	37	1	85488037	85488037	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:85488037G>T	uc001dkp.2	-	10	1235	c.1142C>A	c.(1141-1143)ACC>AAC	p.T381N	MCOLN3_uc001dko.2_5'UTR|MCOLN3_uc001dkq.2_Missense_Mutation_p.T325N	NM_018298	NP_060768	Q8TDD5	MCLN3_HUMAN	mucolipin 3	381	Helical; (Potential).					integral to membrane	ion channel activity			skin(1)	1				all cancers(265;0.00957)|Epithelial(280;0.0254)		CACGAGCATGGTAGAAGTCCC	0.378													15	46	---	---	---	---	PASS
CLCA1	1179	broad.mit.edu	37	1	86959196	86959196	+	Missense_Mutation	SNP	T	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:86959196T>G	uc001dlt.2	+	10	1723	c.1594T>G	c.(1594-1596)TGG>GGG	p.W532G	CLCA1_uc001dls.1_Missense_Mutation_p.W471G	NM_001285	NP_001276	A8K7I4	CLCA1_HUMAN	chloride channel accessory 1 precursor	532					calcium ion transport	extracellular space|integral to plasma membrane	chloride channel activity			ovary(1)	1		Lung NSC(277;0.239)		all cancers(265;0.0249)|Epithelial(280;0.0476)		AATCCTTCTCTGGGATCCCAG	0.507													21	48	---	---	---	---	PASS
BARHL2	343472	broad.mit.edu	37	1	91180241	91180241	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:91180241C>A	uc001dns.2	-	2	740	c.698G>T	c.(697-699)CGA>CTA	p.R233L		NM_020063	NP_064447	Q9NY43	BARH2_HUMAN	BarH-like homeobox 2	233	Homeobox.					nucleus	sequence-specific DNA binding			ovary(1)	1		all_lung(203;0.0263)|Lung SC(238;0.128)		all cancers(265;0.000897)|Epithelial(280;0.00516)|OV - Ovarian serous cystadenocarcinoma(397;0.211)		CCTTGCTTTTCGAGGCTTCTT	0.557													39	122	---	---	---	---	PASS
CCDC76	54482	broad.mit.edu	37	1	100598729	100598729	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:100598729C>A	uc001dsv.2	+	1	24	c.5C>A	c.(4-6)GCG>GAG	p.A2E	SASS6_uc001dsu.2_5'Flank|SASS6_uc009wdz.2_5'Flank|CCDC76_uc010ouf.1_RNA|CCDC76_uc009wea.2_Missense_Mutation_p.A2E	NM_019083	NP_061956	Q9NUP7	TRM13_HUMAN	coiled-coil domain containing 76	2					tRNA processing		metal ion binding|methyltransferase activity			ovary(1)	1		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0814)|all cancers(265;0.133)|COAD - Colon adenocarcinoma(174;0.146)|Lung(183;0.194)		AGAATTATGGCGACCTCCGCG	0.557													4	32	---	---	---	---	PASS
SORT1	6272	broad.mit.edu	37	1	109910038	109910038	+	Silent	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:109910038T>A	uc001dxm.1	-	3	481	c.432A>T	c.(430-432)CTA>CTT	p.L144L	SORT1_uc010ovi.1_Silent_p.L8L|SORT1_uc009wfb.2_Silent_p.L8L	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	144	Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		ACCTTCGATATAGCTTGGACT	0.383													30	100	---	---	---	---	PASS
ATXN7L2	127002	broad.mit.edu	37	1	110028702	110028702	+	Nonsense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:110028702A>T	uc001dxr.2	+	2	166	c.151A>T	c.(151-153)AAA>TAA	p.K51*	ATXN7L2_uc001dxs.2_5'Flank	NM_153340	NP_699171	Q5T6C5	AT7L2_HUMAN	ataxin 7-like 2	51										ovary(2)	2		all_epithelial(167;0.00197)|all_lung(203;0.00291)|Lung NSC(277;0.00453)		Colorectal(144;0.0129)|Lung(183;0.0426)|Epithelial(280;0.0675)|READ - Rectum adenocarcinoma(129;0.0693)|all cancers(265;0.071)|LUSC - Lung squamous cell carcinoma(189;0.228)		GGAGAGTAGCAAAAACACGAA	0.537													20	40	---	---	---	---	PASS
ADAM30	11085	broad.mit.edu	37	1	120437651	120437651	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:120437651C>G	uc001eij.2	-	1	1463	c.1309G>C	c.(1309-1311)GCC>CCC	p.A437P		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	437	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding	p.A437G(1)		ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CTACAGTTGGCACCTGGTTGC	0.453													30	79	---	---	---	---	PASS
PDE4DIP	9659	broad.mit.edu	37	1	144874717	144874717	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:144874717G>C	uc001elw.3	-	30	5182	c.4891C>G	c.(4891-4893)CAC>GAC	p.H1631D	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.H1587D|PDE4DIP_uc001elv.3_Missense_Mutation_p.H638D	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1631	NBPF.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TCTTCATAGTGTGTGTACTCG	0.522			T	PDGFRB	MPD								38	216	---	---	---	---	PASS
CGN	57530	broad.mit.edu	37	1	151501956	151501956	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:151501956G>T	uc009wmw.2	+	11	2171	c.2027G>T	c.(2026-2028)GGT>GTT	p.G676V		NM_020770	NP_065821	Q9P2M7	CING_HUMAN	cingulin	670	Glu-rich.|Potential.					myosin complex|tight junction	actin binding|motor activity			ovary(2)|pancreas(1)	3	Ovarian(49;0.0273)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCTGATCGAGGTCGGGAGCTG	0.627													6	31	---	---	---	---	PASS
MEF2D	4209	broad.mit.edu	37	1	156450738	156450738	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:156450738C>A	uc001fpc.2	-	4	674	c.284G>T	c.(283-285)GGC>GTC	p.G95V	MEF2D_uc001fpb.2_Missense_Mutation_p.G95V|MEF2D_uc001fpd.2_Missense_Mutation_p.G95V|MEF2D_uc001fpe.1_Missense_Mutation_p.G95V|MEF2D_uc009wsa.2_RNA	NM_005920	NP_005911	Q14814	MEF2D_HUMAN	myocyte enhancer factor 2D	95					apoptosis|muscle organ development|nervous system development|positive regulation of transcription from RNA polymerase II promoter	nucleus	activating transcription factor binding|histone deacetylase binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GCTGTCGCAGCCGTTGAAGCC	0.667											OREG0013874	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	43	---	---	---	---	PASS
APOA1BP	128240	broad.mit.edu	37	1	156563309	156563309	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:156563309G>C	uc001fph.2	+	5	665	c.626G>C	c.(625-627)GGA>GCA	p.G209A	APOA1BP_uc001fpg.2_Missense_Mutation_p.G209A|APOA1BP_uc001fpi.2_Silent_p.G190G|APOA1BP_uc001fpj.2_Missense_Mutation_p.G126A|APOA1BP_uc001fpk.2_Missense_Mutation_p.G106A|APOA1BP_uc010php.1_Missense_Mutation_p.G106A	NM_144772	NP_658985	Q8NCW5	AIBP_HUMAN	apolipoprotein A-I binding protein precursor	209	YjeF N-terminal.					extracellular region	protein binding			central_nervous_system(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GTCCTGAAGGGACTCACTGTG	0.567													14	51	---	---	---	---	PASS
FCRL3	115352	broad.mit.edu	37	1	157667113	157667113	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:157667113C>G	uc001frb.2	-	6	953	c.661G>C	c.(661-663)GAT>CAT	p.D221H	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.D221H|FCRL3_uc009wsn.2_Intron|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_5'UTR|FCRL3_uc001frc.1_Missense_Mutation_p.D221H	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	221	Ig-like C2-type 3.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					AGCTGGACATCTGGCCTCTGT	0.582													25	59	---	---	---	---	PASS
VANGL2	57216	broad.mit.edu	37	1	160395042	160395042	+	Missense_Mutation	SNP	A	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:160395042A>C	uc001fwb.1	+	9	1739	c.1440A>C	c.(1438-1440)TTA>TTC	p.L480F	VANGL2_uc001fwc.1_Missense_Mutation_p.L480F	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	480	Cytoplasmic (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TTTTCCTCTTAAAACGCCAGG	0.527													20	39	---	---	---	---	PASS
FCGR2B	2213	broad.mit.edu	37	1	161641367	161641367	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:161641367G>T	uc001gaz.1	+	3	411	c.319G>T	c.(319-321)GAC>TAC	p.D107Y	FCGR2B_uc009wum.1_Missense_Mutation_p.D107Y|FCGR2B_uc001gay.1_Missense_Mutation_p.D106Y|FCGR2B_uc001gba.1_Missense_Mutation_p.D106Y|FCGR2B_uc001gbb.1_Missense_Mutation_p.D107Y|FCGR2B_uc009wun.1_Missense_Mutation_p.D100Y	NM_004001	NP_003992	P31994	FCG2B_HUMAN	Fc fragment of IgG, low affinity IIb, receptor	107	Ig-like C2-type 1.|Extracellular (Potential).				immune response|interspecies interaction between organisms|regulation of immune response	integral to membrane|plasma membrane	IgG binding|receptor activity				0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CAACAACAATGACAGCGGGGA	0.587			T	?	ALL								10	33	---	---	---	---	PASS
ADCY10	55811	broad.mit.edu	37	1	167852846	167852846	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:167852846C>G	uc001ger.2	-	9	1147	c.849G>C	c.(847-849)CAG>CAC	p.Q283H	ADCY10_uc009wvk.2_Missense_Mutation_p.Q191H|ADCY10_uc010plj.1_Missense_Mutation_p.Q130H|ADCY10_uc009wvl.2_Missense_Mutation_p.Q282H|ADCY10_uc009wvm.2_RNA	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	283					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						ATAAATAGCCCTGAAGCTGTT	0.507													14	41	---	---	---	---	PASS
PAPPA2	60676	broad.mit.edu	37	1	176661376	176661376	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:176661376C>T	uc001gkz.2	+	6	3710	c.2546C>T	c.(2545-2547)CCA>CTA	p.P849L	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	849					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ATCCCCATTCCACCTATGGTC	0.517													47	94	---	---	---	---	PASS
ASPM	259266	broad.mit.edu	37	1	197071710	197071710	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:197071710C>G	uc001gtu.2	-	18	6928	c.6671G>C	c.(6670-6672)TGG>TCG	p.W2224S	ASPM_uc001gtv.2_Intron|ASPM_uc001gtw.3_Missense_Mutation_p.W72S	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	2224					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						TTTCATTGCCCAGTATCTTTG	0.328													15	53	---	---	---	---	PASS
CD55	1604	broad.mit.edu	37	1	207510715	207510715	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:207510715C>A	uc001hfq.3	+	8	1315	c.1021C>A	c.(1021-1023)CAT>AAT	p.H341N	CD55_uc001hfp.3_Missense_Mutation_p.H341N|CD55_uc001hfr.3_Missense_Mutation_p.H341N|CD55_uc010psf.1_RNA|CD55_uc009xcf.2_Missense_Mutation_p.H277N|CD55_uc009xce.2_Missense_Mutation_p.H341N|CD55_uc009xcg.2_Missense_Mutation_p.H83N	NM_000574	NP_000565	P08174	DAF_HUMAN	decay accelerating factor for complement isoform	341	Ser/Thr-rich.				complement activation, classical pathway|elevation of cytosolic calcium ion concentration|innate immune response|respiratory burst	anchored to membrane|extracellular region|integral to plasma membrane|membrane raft|soluble fraction	receptor activity			ovary(1)	1					Chloramphenicol(DB00446)	CAAGCATTTTCATGAAACAAC	0.423													20	56	---	---	---	---	PASS
CR2	1380	broad.mit.edu	37	1	207644261	207644261	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:207644261G>T	uc001hfw.2	+	7	1496	c.1402G>T	c.(1402-1404)GTG>TTG	p.V468L	CR2_uc001hfv.2_Missense_Mutation_p.V468L|CR2_uc009xch.2_Missense_Mutation_p.V468L|CR2_uc009xci.1_5'Flank	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	468	Sushi 7.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CCAATGCAAAGGTGCCAGGCC	0.443													10	23	---	---	---	---	PASS
PTPN14	5784	broad.mit.edu	37	1	214571303	214571303	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:214571303C>G	uc001hkk.1	-	8	982	c.711G>C	c.(709-711)ATG>ATC	p.M237I	PTPN14_uc010pty.1_Missense_Mutation_p.M138I	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	237	FERM.				lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		CGAAAATCCCCATAAAGAAAA	0.289													8	44	---	---	---	---	PASS
BPNT1	10380	broad.mit.edu	37	1	220232316	220232316	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:220232316T>C	uc001hma.2	-	9	969	c.797A>G	c.(796-798)CAT>CGT	p.H266R	BPNT1_uc010pug.1_Missense_Mutation_p.H211R|BPNT1_uc010puh.1_Missense_Mutation_p.H230R|BPNT1_uc001hmb.3_Missense_Mutation_p.H281R	NM_006085	NP_006076	O95861	BPNT1_HUMAN	3'(2'), 5'-bisphosphate nucleotidase 1	266					3'-phosphoadenosine 5'-phosphosulfate metabolic process|nervous system development|xenobiotic metabolic process	cytosol	3'(2'),5'-bisphosphate nucleotidase activity			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0558)		AACATTCCCATGGATATCGGT	0.398													21	50	---	---	---	---	PASS
SLC35F3	148641	broad.mit.edu	37	1	234041399	234041399	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:234041399G>C	uc001hvy.1	+	2	323	c.178G>C	c.(178-180)GTG>CTG	p.V60L		NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	Error:Variant_position_missing_in_Q8IY50_after_alignment					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			GTCGCGCTCCGTGGAGGATCT	0.642													18	43	---	---	---	---	PASS
OR6F1	343169	broad.mit.edu	37	1	247875985	247875985	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:247875985G>T	uc001idj.1	-	1	73	c.73C>A	c.(73-75)CTC>ATC	p.L25I		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	25	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			AAGAGAGAGAGCTGAAGAGTT	0.463													16	245	---	---	---	---	PASS
OR14A16	284532	broad.mit.edu	37	1	247978670	247978670	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:247978670T>C	uc001idm.1	-	1	362	c.362A>G	c.(361-363)TAT>TGT	p.Y121C		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TATAGCAGTATAGCGGTCAAA	0.493													37	111	---	---	---	---	PASS
OR2AK2	391191	broad.mit.edu	37	1	248128902	248128902	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:248128902C>A	uc010pzd.1	+	1	269	c.269C>A	c.(268-270)TCC>TAC	p.S90Y	OR2L13_uc001ids.2_Intron	NM_001004491	NP_001004491	Q8NG84	O2AK2_HUMAN	olfactory receptor, family 2, subfamily AK,	90	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			ATGTACATCTCCACCACAGTG	0.473													30	79	---	---	---	---	PASS
OR14C36	127066	broad.mit.edu	37	1	248512845	248512845	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:248512845T>C	uc010pzl.1	+	1	769	c.769T>C	c.(769-771)TAC>CAC	p.Y257H		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	257	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CTCTTCTGTGTACCTCAGGCC	0.498													24	70	---	---	---	---	PASS
OR14C36	127066	broad.mit.edu	37	1	248512948	248512948	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:248512948G>A	uc010pzl.1	+	1	872	c.872G>A	c.(871-873)AGA>AAA	p.R291K		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	291	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TACAGTCTTAGAAATAAGCAA	0.413													33	89	---	---	---	---	PASS
OR2T27	403239	broad.mit.edu	37	1	248813460	248813460	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:248813460G>A	uc010pzo.1	-	1	726	c.726C>T	c.(724-726)TCC>TCT	p.S242S		NM_001001824	NP_001001824	Q8NH04	O2T27_HUMAN	olfactory receptor, family 2, subfamily T,	242	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;1.15e-05)|all_epithelial(71;5.29e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.089)|Lung NSC(105;0.0969)|Melanoma(84;0.199)	all_cancers(173;0.237)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CCATGTGTGAGGAGCAGGTGG	0.522													6	9	---	---	---	---	PASS
OR14I1	401994	broad.mit.edu	37	1	248845065	248845065	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr1:248845065G>A	uc001ieu.1	-	1	541	c.541C>T	c.(541-543)CAT>TAT	p.H181Y		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	181	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GCCAACACATGAGGGATGTCA	0.502													16	41	---	---	---	---	PASS
RNASEH1	246243	broad.mit.edu	37	2	3595592	3595592	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:3595592C>T	uc002qxt.2	-	7	793	c.703G>A	c.(703-705)GGG>AGG	p.G235R	RNASEH1_uc002qxs.2_Missense_Mutation_p.G118R	NM_002936	NP_002927	O60930	RNH1_HUMAN	ribonuclease H1	235	RNase H.				RNA catabolic process	cytoplasm	magnesium ion binding|ribonuclease H activity|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0713)|Epithelial(75;0.167)|all cancers(51;0.22)		ACCTCTTTCCCTGCACTTGTC	0.448													40	126	---	---	---	---	PASS
CMPK2	129607	broad.mit.edu	37	2	7001358	7001358	+	Nonsense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:7001358C>A	uc002qyo.2	-	3	1058	c.949G>T	c.(949-951)GAA>TAA	p.E317*	CMPK2_uc010yis.1_Nonsense_Mutation_p.E317*|CMPK2_uc010ewv.2_Nonsense_Mutation_p.E317*	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	317					dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					TTAGCTATTTCGGAGGCCACA	0.373													13	51	---	---	---	---	PASS
APOB	338	broad.mit.edu	37	2	21247880	21247880	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:21247880G>A	uc002red.2	-	16	2489	c.2361C>T	c.(2359-2361)GCC>GCT	p.A787A		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	787					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	CATGGAGACTGGCAAAACCAA	0.552													22	61	---	---	---	---	PASS
HEATR5B	54497	broad.mit.edu	37	2	37241161	37241161	+	Silent	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:37241161T>A	uc002rpp.1	-	27	4203	c.4107A>T	c.(4105-4107)GTA>GTT	p.V1369V	HEATR5B_uc010ezy.1_5'UTR|HEATR5B_uc002rpq.3_5'UTR	NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1369							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				ATGTACTACATACCTAGACAA	0.333													30	52	---	---	---	---	PASS
HEATR5B	54497	broad.mit.edu	37	2	37265146	37265146	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:37265146G>A	uc002rpp.1	-	21	3164	c.3068C>T	c.(3067-3069)ACA>ATA	p.T1023I		NM_019024	NP_061897	Q9P2D3	HTR5B_HUMAN	HEAT repeat containing 5B	1023							binding			ovary(5)|skin(2)|breast(1)	8		all_hematologic(82;0.21)				GGAACGAATTGTAGAAGTTGT	0.363													14	42	---	---	---	---	PASS
THADA	63892	broad.mit.edu	37	2	43514126	43514126	+	Silent	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:43514126A>G	uc002rsw.3	-	35	5437	c.5085T>C	c.(5083-5085)CCT>CCC	p.P1695P	THADA_uc010far.2_Silent_p.P890P|THADA_uc002rsx.3_Silent_p.P1695P|THADA_uc002rsy.3_RNA	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1695							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TAGACTCTGTAGGAAGATGGT	0.493													31	52	---	---	---	---	PASS
STON1-GTF2A1L	286749	broad.mit.edu	37	2	48873855	48873855	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:48873855C>T	uc010yol.1	+	5	2670	c.2623C>T	c.(2623-2625)CTT>TTT	p.L875F	STON1-GTF2A1L_uc002rwp.1_Missense_Mutation_p.L922F|GTF2A1L_uc002rws.1_Missense_Mutation_p.L218F|GTF2A1L_uc010yom.1_Missense_Mutation_p.L184F|GTF2A1L_uc002rwt.2_Missense_Mutation_p.L218F	NM_006873	NP_006864	B7ZL16	B7ZL16_HUMAN	stonin 1	875					endocytosis|intracellular protein transport|transcription initiation from RNA polymerase II promoter	clathrin adaptor complex|transcription factor TFIIA complex				ovary(3)|pancreas(1)|skin(1)	5		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)			CAGTGATATACTTGTATCTCC	0.413													22	69	---	---	---	---	PASS
SMEK2	57223	broad.mit.edu	37	2	55786013	55786013	+	Silent	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:55786013A>G	uc002rzc.2	-	16	2727	c.2352T>C	c.(2350-2352)AAT>AAC	p.N784N	SMEK2_uc002rzb.2_Silent_p.N699N|SMEK2_uc002rzd.2_Silent_p.N752N|SMEK2_uc002ryz.2_Silent_p.N211N|SMEK2_uc002rza.2_Silent_p.N568N	NM_001122964	NP_001116436	Q5MIZ7	P4R3B_HUMAN	SMEK homolog 2, suppressor of mek1 isoform 1	784						microtubule organizing center|nucleus	protein binding			skin(1)	1			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			TGTTTGTTCCATTAGCAGCAC	0.438													9	186	---	---	---	---	PASS
BCL11A	53335	broad.mit.edu	37	2	60679756	60679756	+	Missense_Mutation	SNP	T	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:60679756T>G	uc010ypj.1	-	4	2554	c.2326A>C	c.(2326-2328)ATG>CTG	p.M776L	BCL11A_uc002sab.2_Missense_Mutation_p.D759A|BCL11A_uc002sac.2_Missense_Mutation_p.M226L|BCL11A_uc010ypi.1_Missense_Mutation_p.D428A	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	Error:Variant_position_missing_in_Q9H165_after_alignment					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CTGCCACACATCTTGAGCTCT	0.537			T	IGH@	B-CLL								8	148	---	---	---	---	PASS
B3GNT2	10678	broad.mit.edu	37	2	62449632	62449632	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:62449632C>T	uc002sbs.2	+	2	515	c.277C>T	c.(277-279)CTG>TTG	p.L93L		NM_006577	NP_006568	Q9NY97	B3GN2_HUMAN	UDP-GlcNAc:betaGal	93	Lumenal (Potential).					Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(1)	1	Lung NSC(7;0.031)|all_lung(7;0.0634)		LUSC - Lung squamous cell carcinoma(7;3.55e-06)|Epithelial(17;0.0963)			TATAAGCCATCTGAACTACTG	0.532													160	214	---	---	---	---	PASS
REG1B	5968	broad.mit.edu	37	2	79312409	79312409	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:79312409C>A	uc002sny.2	-	6	546	c.434G>T	c.(433-435)GGA>GTA	p.G145V		NM_006507	NP_006498	P48304	REG1B_HUMAN	regenerating islet-derived 1 beta precursor	145	C-type lectin.				cell proliferation	extracellular region	sugar binding			central_nervous_system(1)|skin(1)	2						TTTCTTGAATCCTATGGTACA	0.398													24	21	---	---	---	---	PASS
ITPRIPL1	150771	broad.mit.edu	37	2	96992653	96992653	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:96992653C>T	uc002svx.2	+	3	619	c.284C>T	c.(283-285)CCG>CTG	p.P95L	ITPRIPL1_uc010yuk.1_Missense_Mutation_p.P87L|ITPRIPL1_uc002svy.2_Missense_Mutation_p.P103L|ITPRIPL1_uc010yul.1_Missense_Mutation_p.P87L	NM_001008949	NP_001008949	Q6GPH6	IPIL1_HUMAN	inositol 1,4,5-triphosphate receptor interacting	95	Extracellular (Potential).					integral to membrane				central_nervous_system(2)|ovary(1)	3						ATGGGGTGGCCGTTCCAGGCC	0.572													16	32	---	---	---	---	PASS
VWA3B	200403	broad.mit.edu	37	2	98844703	98844703	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:98844703G>A	uc002syo.2	+	15	2322	c.2058G>A	c.(2056-2058)CAG>CAA	p.Q686Q	VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Silent_p.Q205Q|VWA3B_uc002sym.2_Silent_p.Q686Q|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Silent_p.Q343Q|VWA3B_uc002syp.1_Silent_p.Q78Q|VWA3B_uc002syq.1_Intron|VWA3B_uc002syr.1_Silent_p.Q3Q	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	686										ovary(3)|large_intestine(2)|skin(1)	6						AAATGGAACAGGGTCACAGTG	0.398													19	51	---	---	---	---	PASS
PDCL3	79031	broad.mit.edu	37	2	101185427	101185427	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:101185427G>T	uc002tao.2	+	3	280	c.168G>T	c.(166-168)CTG>CTT	p.L56L		NM_024065	NP_076970	Q9H2J4	PDCL3_HUMAN	phosducin-like 3	56					apoptosis|interspecies interaction between organisms	cytoplasm	protein binding				0						TGGAAGAGCTGGAGGATCATG	0.338													20	53	---	---	---	---	PASS
PDCL3	79031	broad.mit.edu	37	2	101185428	101185428	+	Nonsense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:101185428G>T	uc002tao.2	+	3	281	c.169G>T	c.(169-171)GAG>TAG	p.E57*		NM_024065	NP_076970	Q9H2J4	PDCL3_HUMAN	phosducin-like 3	57					apoptosis|interspecies interaction between organisms	cytoplasm	protein binding				0						GGAAGAGCTGGAGGATCATGA	0.338													19	53	---	---	---	---	PASS
MYO7B	4648	broad.mit.edu	37	2	128346007	128346007	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:128346007C>A	uc002top.2	+	15	1784	c.1731C>A	c.(1729-1731)ATC>ATA	p.I577I		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	577	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		GCACAGATATCCTCACCCTGG	0.557													11	21	---	---	---	---	PASS
LRP1B	53353	broad.mit.edu	37	2	141250260	141250260	+	Nonsense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:141250260C>A	uc002tvj.1	-	57	10009	c.9037G>T	c.(9037-9039)GAA>TAA	p.E3013*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3013	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAAGGTTCTTCATCTAAACAC	0.333										TSP Lung(27;0.18)			16	47	---	---	---	---	PASS
MBD5	55777	broad.mit.edu	37	2	149226852	149226852	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:149226852G>A	uc002twm.3	+	9	2328	c.1340G>A	c.(1339-1341)GGG>GAG	p.G447E	MBD5_uc010zbs.1_RNA|MBD5_uc010fns.2_Missense_Mutation_p.G447E|MBD5_uc002twn.1_5'Flank	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	447						chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		CACATGATGGGGACTGGAATT	0.507													16	30	---	---	---	---	PASS
TANK	10010	broad.mit.edu	37	2	162036186	162036186	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:162036186A>G	uc002ubr.1	+	2	171	c.13A>G	c.(13-15)ATT>GTT	p.I5V	TANK_uc002ubq.1_Missense_Mutation_p.I5V|TANK_uc002ubs.2_Missense_Mutation_p.I5V	NM_004180	NP_004171	Q92844	TANK_HUMAN	TRAF interacting protein TANK isoform a	5						cytosol	metal ion binding|protein binding			ovary(1)	1						GGATAAAAACATTGGCGAGCA	0.393													14	48	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179425815	179425815	+	Silent	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:179425815A>T	uc010zfg.1	-	275	77564	c.77340T>A	c.(77338-77340)GTT>GTA	p.V25780V	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.V19475V|TTN_uc010zfi.1_Silent_p.V19408V|TTN_uc010zfj.1_Silent_p.V19283V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26707							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CATCATCTTTAACTATAATAG	0.423													39	104	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179437674	179437674	+	Silent	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:179437674A>G	uc010zfg.1	-	275	65705	c.65481T>C	c.(65479-65481)TAT>TAC	p.Y21827Y	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.Y15522Y|TTN_uc010zfi.1_Silent_p.Y15455Y|TTN_uc010zfj.1_Silent_p.Y15330Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	22754							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGCGGATCTTATATTCCTGAT	0.493													11	22	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179497021	179497021	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:179497021G>T	uc010zfg.1	-	185	36120	c.35896C>A	c.(35896-35898)CAG>AAG	p.Q11966K	TTN_uc010zfh.1_Missense_Mutation_p.Q5661K|TTN_uc010zfi.1_Missense_Mutation_p.Q5594K|TTN_uc010zfj.1_Missense_Mutation_p.Q5469K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12893							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTAGGCGCTGGTCATTCTTG	0.438													5	13	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179497022	179497022	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:179497022G>T	uc010zfg.1	-	185	36119	c.35895C>A	c.(35893-35895)GAC>GAA	p.D11965E	TTN_uc010zfh.1_Missense_Mutation_p.D5660E|TTN_uc010zfi.1_Missense_Mutation_p.D5593E|TTN_uc010zfj.1_Missense_Mutation_p.D5468E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	12892							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTAGGCGCTGGTCATTCTTGA	0.433													5	14	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179556764	179556764	+	Nonsense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:179556764C>A	uc010zfg.1	-	118	28233	c.28009G>T	c.(28009-28011)GAA>TAA	p.E9337*	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Nonsense_Mutation_p.E5998*|TTN_uc010fre.1_Nonsense_Mutation_p.E448*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10264							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAGCAGGTTCCTTCTTAGGC	0.453													15	27	---	---	---	---	PASS
TTN	7273	broad.mit.edu	37	2	179588731	179588731	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:179588731G>T	uc010zfg.1	-	70	17747	c.17523C>A	c.(17521-17523)GTC>GTA	p.V5841V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.V2502V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6768							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGCTCCACTGACAATCTTGG	0.433													22	46	---	---	---	---	PASS
MSTN	2660	broad.mit.edu	37	2	190927155	190927155	+	Missense_Mutation	SNP	A	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:190927155A>C	uc002urp.2	-	1	301	c.168T>G	c.(166-168)ATT>ATG	p.I56M		NM_005259	NP_005250	O14793	GDF8_HUMAN	myostatin precursor	56					muscle organ development|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.000742)|Epithelial(96;0.0121)|all cancers(119;0.0395)			TTTGTATCTTAATGGCTTCTA	0.388													17	45	---	---	---	---	PASS
DNAH7	56171	broad.mit.edu	37	2	196825422	196825422	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:196825422G>A	uc002utj.3	-	18	2554	c.2453C>T	c.(2452-2454)CCA>CTA	p.P818L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	818	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAATGCATATGGAGAATCATG	0.393													25	91	---	---	---	---	PASS
CCDC150	284992	broad.mit.edu	37	2	197521505	197521505	+	Missense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:197521505A>T	uc002utp.1	+	3	460	c.325A>T	c.(325-327)AGC>TGC	p.S109C	CCDC150_uc002uto.1_Missense_Mutation_p.S109C|CCDC150_uc010zgq.1_RNA|CCDC150_uc010zgr.1_Intron|CCDC150_uc010zgs.1_Intron	NM_001080539	NP_001074008	Q8NCX0	CC150_HUMAN	coiled-coil domain containing 150	109	Potential.										0						CCGTCTTGAAAGCCTCATGCA	0.373													23	64	---	---	---	---	PASS
CPS1	1373	broad.mit.edu	37	2	211541783	211541783	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:211541783A>G	uc002vee.3	+	37	4459	c.4327A>G	c.(4327-4329)ACT>GCT	p.T1443A	CPS1_uc010fur.2_Missense_Mutation_p.T1449A|CPS1_uc010fus.2_Missense_Mutation_p.T992A	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1443					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		CAACAACAACACTAAATTTGT	0.348													22	92	---	---	---	---	PASS
KIF1A	547	broad.mit.edu	37	2	241656788	241656788	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr2:241656788C>T	uc002vzy.2	-	47	5212	c.5066G>A	c.(5065-5067)CGG>CAG	p.R1689Q	KIF1A_uc010fzk.2_Missense_Mutation_p.R1790Q|KIF1A_uc002vzw.2_Missense_Mutation_p.R350Q|KIF1A_uc002vzx.2_Missense_Mutation_p.R416Q	NM_004321	NP_004312	Q12756	KIF1A_HUMAN	axonal transport of synaptic vesicles	1689					anterograde axon cargo transport	cytoplasm|microtubule|nucleus	ATP binding|microtubule motor activity			lung(1)	1		all_epithelial(40;1.35e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0295)|all_neural(83;0.0459)|Lung NSC(271;0.0942)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;6.12e-30)|all cancers(36;3.46e-27)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-14)|Kidney(56;5e-09)|KIRC - Kidney renal clear cell carcinoma(57;5e-08)|BRCA - Breast invasive adenocarcinoma(100;5.87e-06)|Lung(119;0.00209)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Colorectal(34;0.0282)|COAD - Colon adenocarcinoma(134;0.176)		GGTTCAGACCCGCATCTGGGC	0.662													10	17	---	---	---	---	PASS
ITPR1	3708	broad.mit.edu	37	3	4683776	4683776	+	Splice_Site	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:4683776G>T	uc003bqa.2	+	7	715	c.367_splice	c.e7-1	p.L123_splice	ITPR1_uc010hbz.2_Splice_Site_p.L123_splice|ITPR1_uc010hca.1_Splice_Site_p.L123_splice|ITPR1_uc011asu.1_Splice_Site_p.L123_splice|ITPR1_uc010hcb.1_Splice_Site_p.L123_splice	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1						activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		TGGGTTTTTAGCTCCTGCATT	0.408													25	27	---	---	---	---	PASS
SLC6A6	6533	broad.mit.edu	37	3	14489188	14489188	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:14489188A>G	uc010heg.2	+	12	754	c.463A>G	c.(463-465)AAG>GAG	p.K155E	SLC6A6_uc003byp.2_Missense_Mutation_p.K155E|SLC6A6_uc010hef.1_RNA|SLC6A6_uc003byq.2_Missense_Mutation_p.K155E|SLC6A6_uc003byr.2_RNA	NM_001134367	NP_001127839	P31641	SC6A6_HUMAN	solute carrier family 6 (neurotransmitter	155	Extracellular (Potential).				cellular amino acid metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity|taurine:sodium symporter activity			ovary(1)	1						GTCCTTCCAGAAGGAGCTGCC	0.542													56	141	---	---	---	---	PASS
C3orf19	51244	broad.mit.edu	37	3	14695956	14695956	+	Silent	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:14695956C>G	uc003byw.2	+	2	157	c.66C>G	c.(64-66)CTC>CTG	p.L22L	C3orf19_uc010hei.1_Silent_p.L22L	NM_016474	NP_057558	Q6PII3	CC019_HUMAN	hypothetical protein LOC51244	22											0						AGGCTGAACTCTTCCGAAAGC	0.299													4	22	---	---	---	---	PASS
AZI2	64343	broad.mit.edu	37	3	28373873	28373873	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:28373873G>C	uc003ceb.2	-	6	1166	c.634C>G	c.(634-636)CTA>GTA	p.L212V	AZI2_uc003cec.2_Missense_Mutation_p.L100V|AZI2_uc003ced.2_Missense_Mutation_p.L212V|AZI2_uc003cee.3_Missense_Mutation_p.L212V|AZI2_uc003ceg.2_Missense_Mutation_p.L212V|AZI2_uc011axd.1_Missense_Mutation_p.L212V|AZI2_uc003cef.2_Missense_Mutation_p.L212V	NM_022461	NP_071906	Q9H6S1	AZI2_HUMAN	5-azacytidine induced 2 isoform a	212	Interaction with TBK1.					mitochondrion|plasma membrane				ovary(2)	2						GAAATGCTTAGTTTTTGGAGA	0.313													25	27	---	---	---	---	PASS
TGFBR2	7048	broad.mit.edu	37	3	30713401	30713401	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:30713401G>A	uc003ceo.2	+	4	1108	c.726G>A	c.(724-726)CTG>CTA	p.L242L	TGFBR2_uc003cen.2_Silent_p.L267L	NM_003242	NP_003233	P37173	TGFR2_HUMAN	transforming growth factor, beta receptor II	242	Cytoplasmic (Potential).				activation of protein kinase activity|brain development|embryonic cranial skeleton morphogenesis|embryonic hemopoiesis|heart development|myeloid dendritic cell differentiation|palate development|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of B cell tolerance induction|positive regulation of mesenchymal cell proliferation|positive regulation of NK T cell differentiation|positive regulation of reactive oxygen species metabolic process|positive regulation of T cell tolerance induction|positive regulation of tolerance induction to self antigen|response to cholesterol|response to drug|transforming growth factor beta receptor signaling pathway|transforming growth factor beta receptor signaling pathway|vasculogenesis	caveola|external side of plasma membrane	ATP binding|glycosaminoglycan binding|metal ion binding|protein binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type II|type I transforming growth factor beta receptor binding|type I transforming growth factor beta receptor binding|type III transforming growth factor beta receptor binding			pancreas(9)|large_intestine(6)|stomach(4)|lung(3)|ovary(3)|central_nervous_system(1)	26						CAGAGCTGCTGCCCATTGAGC	0.537													29	19	---	---	---	---	PASS
SUSD5	26032	broad.mit.edu	37	3	33195275	33195275	+	Silent	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:33195275T>C	uc003cfo.1	-	5	1267	c.849A>G	c.(847-849)TCA>TCG	p.S283S		NM_015551	NP_056366	O60279	SUSD5_HUMAN	sushi domain containing 5 precursor	283	Extracellular (Potential).				cell adhesion	integral to membrane	hyaluronic acid binding			ovary(1)|central_nervous_system(1)	2						GTGATCCTGGTGAATCTGCGG	0.537													26	19	---	---	---	---	PASS
ARPP21	10777	broad.mit.edu	37	3	35730842	35730842	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:35730842C>A	uc003cgb.2	+	7	714	c.450C>A	c.(448-450)CAC>CAA	p.H150Q	ARPP21_uc003cga.2_Missense_Mutation_p.H150Q|ARPP21_uc011axy.1_Missense_Mutation_p.H150Q|ARPP21_uc003cgf.2_5'Flank	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	150						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						TAGACTTACACGAGTTTCTGA	0.353													31	36	---	---	---	---	PASS
ARPP21	10777	broad.mit.edu	37	3	35770811	35770811	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:35770811C>T	uc003cgb.2	+	15	1506	c.1242C>T	c.(1240-1242)AGC>AGT	p.S414S	ARPP21_uc003cga.2_Silent_p.S360S|ARPP21_uc011axy.1_Silent_p.S380S|ARPP21_uc003cgf.2_Silent_p.S215S|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	414	Ser-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AGTCTTCCAGCAGTGCAGGCT	0.527													14	26	---	---	---	---	PASS
LRIG1	26018	broad.mit.edu	37	3	66444471	66444471	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:66444471G>T	uc003dmx.2	-	12	1475	c.1461C>A	c.(1459-1461)TTC>TTA	p.F487L	LRIG1_uc011bfu.1_Missense_Mutation_p.F107L|LRIG1_uc003dmw.2_Missense_Mutation_p.F153L|LRIG1_uc010hnz.2_Missense_Mutation_p.F203L|LRIG1_uc010hoa.2_Missense_Mutation_p.F511L	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	487	Extracellular (Potential).|LRRCT.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		TACCGCACACGAAACTCTCTG	0.493													3	20	---	---	---	---	PASS
PDZRN3	23024	broad.mit.edu	37	3	73433401	73433401	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:73433401C>A	uc003dpl.1	-	10	2412	c.2316G>T	c.(2314-2316)GAG>GAT	p.E772D	PDZRN3_uc011bgh.1_Missense_Mutation_p.E429D|PDZRN3_uc010hoe.1_Missense_Mutation_p.E470D|PDZRN3_uc011bgf.1_Missense_Mutation_p.E489D|PDZRN3_uc011bgg.1_Missense_Mutation_p.E492D	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	772							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		CGGGGGAGATCTCCAGGGTGA	0.652													4	13	---	---	---	---	PASS
CNTN3	5067	broad.mit.edu	37	3	74413749	74413749	+	Splice_Site	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:74413749T>A	uc003dpm.1	-	9	1164	c.1084_splice	c.e9-1	p.E362_splice		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor						cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TGTTCTCTCCTAGATGATAAT	0.328													10	20	---	---	---	---	PASS
DRD3	1814	broad.mit.edu	37	3	113850162	113850162	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:113850162T>C	uc003ebd.2	-	7	1232	c.809A>G	c.(808-810)CAA>CGA	p.Q270R	DRD3_uc010hqn.1_Missense_Mutation_p.Q270R|DRD3_uc003ebb.1_Missense_Mutation_p.Q270R|DRD3_uc003ebc.1_Missense_Mutation_p.Q270R	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	270	Cytoplasmic.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	TCCTCTTTCTTGGAAGCCTGG	0.532													22	54	---	---	---	---	PASS
GOLGB1	2804	broad.mit.edu	37	3	121416536	121416536	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:121416536C>G	uc003eei.3	-	13	2945	c.2819G>C	c.(2818-2820)AGA>ACA	p.R940T	GOLGB1_uc010hrc.2_Missense_Mutation_p.R945T|GOLGB1_uc003eej.3_Missense_Mutation_p.R906T|GOLGB1_uc011bjm.1_Missense_Mutation_p.R826T|GOLGB1_uc010hrd.1_Missense_Mutation_p.R904T	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	940	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		TTCCTCAGCTCTGGATAATAA	0.358													14	109	---	---	---	---	PASS
CASR	846	broad.mit.edu	37	3	122003472	122003472	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:122003472C>G	uc003eev.3	+	7	3043	c.2671C>G	c.(2671-2673)CGC>GGC	p.R891G	CASR_uc003eew.3_Missense_Mutation_p.R901G	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	891	Cytoplasmic (Potential).|Interaction with RNF19A.				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CACGCTGCGCCGCAGCAACGT	0.627													15	20	---	---	---	---	PASS
ALDH1L1	10840	broad.mit.edu	37	3	125831645	125831645	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:125831645C>G	uc003eim.1	-	19	2351	c.2161G>C	c.(2161-2163)GAT>CAT	p.D721H	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.D620H|ALDH1L1_uc003ein.1_Missense_Mutation_p.D256H	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	721	Aldehyde dehydrogenase.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	ACGAACTCATCATGAATGGAG	0.562													18	106	---	---	---	---	PASS
DBR1	51163	broad.mit.edu	37	3	137881387	137881387	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:137881387C>A	uc003erv.2	-	8	1115	c.979G>T	c.(979-981)GTA>TTA	p.V327L	DBR1_uc003eru.2_Missense_Mutation_p.V276L|DBR1_uc003ert.2_Missense_Mutation_p.V95L	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	327						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						TTTTCCAATACTTCTTTCATA	0.333													15	94	---	---	---	---	PASS
PLSCR5	389158	broad.mit.edu	37	3	146309615	146309615	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:146309615C>A	uc003ewb.2	-	5	1511	c.507G>T	c.(505-507)TGG>TGT	p.W169C	PLSCR5_uc010hvb.2_Missense_Mutation_p.W157C|PLSCR5_uc010hvc.2_Missense_Mutation_p.W169C	NM_001085420	NP_001078889	A0PG75	PLS5_HUMAN	phospholipid scramblase family, member 5	169											0						GAAAGGGGTCCCACTTCTGCG	0.378													5	44	---	---	---	---	PASS
MED12L	116931	broad.mit.edu	37	3	150874031	150874031	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:150874031G>T	uc003eyp.2	+	5	678	c.640G>T	c.(640-642)GAT>TAT	p.D214Y	MED12L_uc011bnz.1_Missense_Mutation_p.D214Y|MED12L_uc003eym.1_Missense_Mutation_p.D214Y|MED12L_uc003eyn.2_Missense_Mutation_p.D214Y|MED12L_uc003eyo.2_Missense_Mutation_p.D214Y	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	214					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CAGCACGGGCGATGGCCCTGT	0.473													10	67	---	---	---	---	PASS
SHOX2	6474	broad.mit.edu	37	3	157820671	157820671	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:157820671G>A	uc003fbr.2	-	2	490	c.351C>T	c.(349-351)TCC>TCT	p.S117S	SHOX2_uc003fbs.2_Silent_p.S141S|SHOX2_uc010hvw.2_Silent_p.S117S	NM_006884	NP_006875	O60902	SHOX2_HUMAN	short stature homeobox 2 isoform a	117					nervous system development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			Lung(72;0.00318)|LUSC - Lung squamous cell carcinoma(72;0.0043)			TCAGCTCCGGGGACACTGGAG	0.483													13	82	---	---	---	---	PASS
YEATS2	55689	broad.mit.edu	37	3	183454574	183454574	+	Missense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:183454574A>T	uc003fly.2	+	8	1076	c.881A>T	c.(880-882)AAG>ATG	p.K294M		NM_018023	NP_060493	Q9ULM3	YETS2_HUMAN	YEATS domain containing 2	294	YEATS.				histone H3 acetylation|negative regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex	TBP-class protein binding			ovary(3)|large_intestine(1)	4	all_cancers(143;6.55e-10)|Ovarian(172;0.0303)		all cancers(12;2.38e-42)|Epithelial(37;1.9e-36)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GTTCATTTTAAGGACAGCCAG	0.403													22	152	---	---	---	---	PASS
TPRG1	285386	broad.mit.edu	37	3	188956624	188956624	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:188956624G>T	uc003frv.1	+	9	1632	c.405G>T	c.(403-405)CTG>CTT	p.L135L	TPRG1_uc003frw.1_Silent_p.L135L	NM_198485	NP_940887	Q6ZUI0	TPRG1_HUMAN	tumor protein p63 regulated 1	135											0	all_cancers(143;6.12e-12)|all_hematologic(3;0.0359)|Ovarian(172;0.0925)	all_lung(153;8.23e-09)|Lung NSC(153;3.55e-06)|all_neural(597;0.0019)|Myeloproliferative disorder(1037;0.0255)	Lung(62;6.93e-06)	GBM - Glioblastoma multiforme(93;4.77e-14)		GTGTGCAGCTGCAGCGGATTC	0.473													34	105	---	---	---	---	PASS
CLDN16	10686	broad.mit.edu	37	3	190126254	190126254	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:190126254G>C	uc003fsi.2	+	4	812	c.744G>C	c.(742-744)TTG>TTC	p.L248F	CLDN16_uc010hze.2_Intron	NM_006580	NP_006571	Q9Y5I7	CLD16_HUMAN	claudin 16	248	Helical; (Potential).				calcium-independent cell-cell adhesion|cellular metal ion homeostasis|excretion	integral to membrane|tight junction	identical protein binding|magnesium ion transmembrane transporter activity|structural molecule activity			ovary(1)	1	all_cancers(143;3.61e-10)|Ovarian(172;0.0991)		Lung(62;2.23e-05)|LUSC - Lung squamous cell carcinoma(58;3.15e-05)	GBM - Glioblastoma multiforme(93;0.018)		GTTGCTTTTTGGCTGGAGCTG	0.388													13	92	---	---	---	---	PASS
ATP13A4	84239	broad.mit.edu	37	3	193130151	193130151	+	Silent	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:193130151T>A	uc003ftd.2	-	27	3132	c.3024A>T	c.(3022-3024)ACA>ACT	p.T1008T	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	1008	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CATTTTGTACTGTGCAGGCAC	0.393													59	179	---	---	---	---	PASS
CPN2	1370	broad.mit.edu	37	3	194062580	194062580	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:194062580G>A	uc003fts.2	-	2	942	c.852C>T	c.(850-852)CTC>CTT	p.L284L		NM_001080513	NP_001073982	P22792	CPN2_HUMAN	carboxypeptidase N, polypeptide 2	284	LRR 8.				protein stabilization	extracellular region	enzyme regulator activity			ovary(5)	5	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.65e-05)		TGTGGGCAAAGAGGCCGGCAG	0.612													8	62	---	---	---	---	PASS
IQCG	84223	broad.mit.edu	37	3	197670685	197670685	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr3:197670685C>A	uc003fyo.2	-	3	392	c.246G>T	c.(244-246)ATG>ATT	p.M82I	IQCG_uc003fyp.2_Missense_Mutation_p.M82I|IQCG_uc003fyq.3_Missense_Mutation_p.M82I	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	82											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		ACTGAACGGGCATGATGTAGT	0.468													22	151	---	---	---	---	PASS
ZNF595	152687	broad.mit.edu	37	4	86295	86295	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:86295G>C	uc003fzv.1	+	6	1057	c.901G>C	c.(901-903)GAA>CAA	p.E301Q	ZNF595_uc003fzu.1_Intron|ZNF718_uc003fzt.3_Intron|ZNF595_uc011bus.1_Missense_Mutation_p.E69Q|ZNF595_uc011but.1_Missense_Mutation_p.E69Q	NM_182524	NP_872330	Q7Z3I0	Q7Z3I0_HUMAN	zinc finger protein 595	301					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0		all_cancers(4;0.0738)|all_epithelial(65;0.139)		Lung(54;0.0654)|Epithelial(2;0.0921)|all cancers(2;0.146)|LUSC - Lung squamous cell carcinoma(95;0.173)		AAGCCTGAATGAACATAAGAA	0.378													16	39	---	---	---	---	PASS
CTBP1	1487	broad.mit.edu	37	4	1206732	1206732	+	Missense_Mutation	SNP	C	A	A	rs7687296	byFrequency	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:1206732C>A	uc003gcv.1	-	8	1273	c.1108G>T	c.(1108-1110)GTG>TTG	p.V370L	uc003gcs.1_Intron|CTBP1_uc003gct.1_Missense_Mutation_p.V351L|CTBP1_uc003gcu.1_Missense_Mutation_p.V359L|CTBP1_uc003gcw.2_Missense_Mutation_p.V44L	NM_001328	NP_001319	Q13363	CTBP1_HUMAN	C-terminal binding protein 1 isoform 1	370					interspecies interaction between organisms|negative regulation of cell proliferation|negative regulation of histone H4 acetylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone deacetylation|protein phosphorylation|regulation of cell cycle|regulation of transcription by chromatin organization|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|viral genome replication|white fat cell differentiation	cytoplasm|transcriptional repressor complex	NAD binding|oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor|protein C-terminus binding|protein domain specific binding|transcription factor binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(23;0.00818)	Colorectal(103;0.2)		TCAGGGTGCACGACGGCGGGG	0.657													4	17	---	---	---	---	PASS
SLIT2	9353	broad.mit.edu	37	4	20618590	20618590	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:20618590C>A	uc003gpr.1	+	35	4109	c.3905C>A	c.(3904-3906)ACC>AAC	p.T1302N	SLIT2_uc003gps.1_Missense_Mutation_p.T1294N	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1302	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						CAGAACGGAACCAGCTTCCAC	0.587													11	48	---	---	---	---	PASS
N4BP2	55728	broad.mit.edu	37	4	40123482	40123482	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:40123482C>T	uc003guy.3	+	9	4089	c.3751C>T	c.(3751-3753)CCA>TCA	p.P1251S	N4BP2_uc010ifq.2_Missense_Mutation_p.P1171S|N4BP2_uc010ifr.2_Missense_Mutation_p.P1171S	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	1251						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						GCAGTCCTTTCCAGGTATTCT	0.373													25	96	---	---	---	---	PASS
ATP10D	57205	broad.mit.edu	37	4	47514816	47514816	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:47514816G>C	uc003gxk.1	+	2	423	c.259G>C	c.(259-261)GTG>CTG	p.V87L	ATP10D_uc003gxj.3_Missense_Mutation_p.V87L	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	87	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						TCTGAATTTTGTGCCAAGAAA	0.333													11	37	---	---	---	---	PASS
CORIN	10699	broad.mit.edu	37	4	47682236	47682236	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:47682236C>G	uc003gxm.2	-	8	1147	c.1054G>C	c.(1054-1056)GAC>CAC	p.D352H	CORIN_uc011bzf.1_Missense_Mutation_p.D213H|CORIN_uc011bzg.1_Missense_Mutation_p.D285H|CORIN_uc011bzh.1_Intron|CORIN_uc011bzi.1_Intron|CORIN_uc003gxn.3_3'UTR	NM_006587	NP_006578	Q9Y5Q5	CORIN_HUMAN	corin	352	Extracellular (Potential).|LDL-receptor class A 3.				peptide hormone processing|regulation of systemic arterial blood pressure by atrial natriuretic peptide	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity|serine-type exopeptidase activity			ovary(1)|central_nervous_system(1)	2						CAGCGCCCGTCCCCGCAGCGA	0.542													10	30	---	---	---	---	PASS
EPHA5	2044	broad.mit.edu	37	4	66231739	66231739	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:66231739T>C	uc003hcy.2	-	11	2154	c.1961A>G	c.(1960-1962)CAT>CGT	p.H654R	EPHA5_uc003hcx.2_Missense_Mutation_p.H586R|EPHA5_uc003hcz.2_Missense_Mutation_p.H632R|EPHA5_uc011cah.1_Missense_Mutation_p.H655R|EPHA5_uc011cai.1_Missense_Mutation_p.H633R|EPHA5_uc003hda.2_Missense_Mutation_p.H655R	NM_004439	NP_004430	P54756	EPHA5_HUMAN	ephrin receptor EphA5 isoform a precursor	654	Cytoplasmic (Potential).				cAMP-mediated signaling|neuron development	dendrite|external side of plasma membrane|integral to plasma membrane|neuronal cell body|perinuclear region of cytoplasm|rough endoplasmic reticulum	ATP binding|transmembrane-ephrin receptor activity			lung(19)|stomach(2)|ovary(2)|central_nervous_system(1)	24						CTCATAGGTATGTGGATCAAT	0.373										TSP Lung(17;0.13)			25	34	---	---	---	---	PASS
UGT2A3	79799	broad.mit.edu	37	4	69816854	69816854	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:69816854C>G	uc003hef.2	-	1	656	c.625G>C	c.(625-627)GTA>CTA	p.V209L	UGT2A3_uc010ihp.1_RNA	NM_024743	NP_079019	Q6UWM9	UD2A3_HUMAN	UDP glucuronosyltransferase 2 family,	209	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(1)|skin(1)	2						GAATTTTTTACTCTTTCCAGA	0.403													13	30	---	---	---	---	PASS
ENAM	10117	broad.mit.edu	37	4	71509397	71509397	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:71509397G>A	uc011caw.1	+	9	2535	c.2254G>A	c.(2254-2256)GCT>ACT	p.A752T		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	752					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			TAATAATGCCGCTGGACCAGA	0.453													21	51	---	---	---	---	PASS
C4orf21	55345	broad.mit.edu	37	4	113462282	113462282	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:113462282G>A	uc003iau.2	-	25	5952	c.5741C>T	c.(5740-5742)ACC>ATC	p.T1914I	C4orf21_uc003iav.2_RNA|C4orf21_uc003iat.2_Missense_Mutation_p.T372I	NM_018392	NP_060862	Q6ZU11	YD002_HUMAN	prematurely terminated mRNA decay factor-like	736						integral to membrane	zinc ion binding				0		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000676)		AAAACACAGGGTTGGTAGCCA	0.378													5	11	---	---	---	---	PASS
ANK2	287	broad.mit.edu	37	4	114195750	114195750	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:114195750T>C	uc003ibe.3	+	15	1728	c.1628T>C	c.(1627-1629)GTG>GCG	p.V543A	ANK2_uc003ibd.3_Missense_Mutation_p.V522A|ANK2_uc003ibf.3_Missense_Mutation_p.V543A|ANK2_uc003ibc.2_Missense_Mutation_p.V519A|ANK2_uc011cgb.1_Missense_Mutation_p.V558A	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	543	ANK 16.				axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		GAGGGCCAGGTGGATGTGGCA	0.512													14	43	---	---	---	---	PASS
IL21	59067	broad.mit.edu	37	4	123542049	123542049	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:123542049G>T	uc003ies.2	-	1	163	c.118C>A	c.(118-120)CGT>AGT	p.R40S	uc003iet.2_RNA|IL21_uc010int.2_Missense_Mutation_p.R33S	NM_021803	NP_068575	Q9HBE4	IL21_HUMAN	interleukin 21	33					cell maturation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-17 production|positive regulation of T cell proliferation|signal transduction	extracellular space	cytokine activity|interleukin-2 receptor binding				0						ATAAGTTGACGCATTCTAATC	0.368													11	54	---	---	---	---	PASS
NPY2R	4887	broad.mit.edu	37	4	156135368	156135368	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:156135368G>T	uc003ioq.2	+	2	772	c.277G>T	c.(277-279)GCT>TCT	p.A93S	NPY2R_uc003ior.2_Missense_Mutation_p.A93S	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	93	Helical; Name=2; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				TGCCAATCTGGCTGTGGCAGA	0.473													4	24	---	---	---	---	PASS
GRIA2	2891	broad.mit.edu	37	4	158224786	158224786	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:158224786C>T	uc003ipm.3	+	3	771	c.312C>T	c.(310-312)TGC>TGT	p.C104C	GRIA2_uc011cit.1_Silent_p.C57C|GRIA2_uc003ipl.3_Silent_p.C104C|GRIA2_uc003ipk.3_Silent_p.C57C|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	104	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	CATCATTTTGCGGAACACTCC	0.433													25	95	---	---	---	---	PASS
C4orf46	201725	broad.mit.edu	37	4	159590809	159590809	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:159590809C>G	uc003iqa.2	-	2	547	c.298G>C	c.(298-300)GAC>CAC	p.D100H	C4orf46_uc010iqp.1_RNA|ETFDH_uc010iqq.2_5'Flank|ETFDH_uc003iqb.2_5'Flank|ETFDH_uc011cjg.1_5'Flank|ETFDH_uc010iqr.2_5'Flank	NM_001008393	NP_001008394	Q504U0	CD046_HUMAN	hypothetical protein LOC201725	100										skin(1)	1						TTCAAGAGGTCCCGCCACGTT	0.378													13	38	---	---	---	---	PASS
RAPGEF2	9693	broad.mit.edu	37	4	160251607	160251607	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:160251607A>G	uc003iqg.3	+	7	1251	c.941A>G	c.(940-942)AAA>AGA	p.K314R		NM_014247	NP_055062	Q9Y4G8	RPGF2_HUMAN	Rap guanine nucleotide exchange factor 2	314	N-terminal Ras-GEF.				cAMP-mediated signaling|MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|Rap GTPase activator activity|Rap guanyl-nucleotide exchange factor activity|signal transducer activity			lung(2)|upper_aerodigestive_tract(1)|skin(1)	4	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.0817)		GAAGTGGGCAAAAAGTTATTG	0.363													14	59	---	---	---	---	PASS
FSTL5	56884	broad.mit.edu	37	4	162697178	162697178	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:162697178A>G	uc003iqh.2	-	5	894	c.458T>C	c.(457-459)TTA>TCA	p.L153S	FSTL5_uc003iqi.2_Missense_Mutation_p.L152S|FSTL5_uc010iqv.2_Missense_Mutation_p.L152S	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	153						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TTGTAAATCTAATAGCATATT	0.284													9	21	---	---	---	---	PASS
FSTL5	56884	broad.mit.edu	37	4	162697198	162697198	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:162697198G>T	uc003iqh.2	-	5	874	c.438C>A	c.(436-438)AGC>AGA	p.S146R	FSTL5_uc003iqi.2_Missense_Mutation_p.S145R|FSTL5_uc010iqv.2_Missense_Mutation_p.S145R	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	146						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		TTTTCATCTTGCTGTATTCAG	0.279													6	19	---	---	---	---	PASS
ADAM29	11086	broad.mit.edu	37	4	175897228	175897228	+	Silent	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:175897228T>A	uc003iuc.2	+	5	1222	c.552T>A	c.(550-552)ACT>ACA	p.T184T	ADAM29_uc003iud.2_Silent_p.T184T|ADAM29_uc010irr.2_Silent_p.T184T|ADAM29_uc011cki.1_Silent_p.T184T	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	184					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		ATAATTCCACTCAGAAGCAAA	0.358													14	28	---	---	---	---	PASS
SDHA	6389	broad.mit.edu	37	5	225549	225549	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:225549G>T	uc003jao.3	+	4	443	c.328G>T	c.(328-330)GCT>TCT	p.A110S	SDHA_uc003jan.2_Missense_Mutation_p.A110S|SDHA_uc011clv.1_Missense_Mutation_p.A110S|SDHA_uc011clw.1_Intron|SDHA_uc003jap.3_Missense_Mutation_p.A110S|SDHA_uc003jaq.3_5'Flank	NM_004168	NP_004159	P31040	DHSA_HUMAN	succinate dehydrogenase complex, subunit A,	110					nervous system development|respiratory electron transport chain|succinate metabolic process|transport|tricarboxylic acid cycle	mitochondrial respiratory chain complex II	electron carrier activity|flavin adenine dinucleotide binding|protein binding|succinate dehydrogenase (ubiquinone) activity				0			Epithelial(17;0.0159)|all cancers(22;0.0236)|OV - Ovarian serous cystadenocarcinoma(19;0.0674)|Lung(60;0.113)		Succinic acid(DB00139)	AATCAATGCTGCTCTGGGGAA	0.567									Familial_Paragangliomas				21	77	---	---	---	---	PASS
SLC9A3	6550	broad.mit.edu	37	5	482830	482830	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:482830G>T	uc003jbe.2	-	7	1301	c.1189C>A	c.(1189-1191)CGC>AGC	p.R397S	SLC9A3_uc011clx.1_Missense_Mutation_p.R397S	NM_004174	NP_004165	P48764	SL9A3_HUMAN	solute carrier family 9 (sodium/hydrogen	397	Extracellular (Potential).					cell surface|integral to membrane	sodium:hydrogen antiporter activity				0			Epithelial(17;0.000529)|OV - Ovarian serous cystadenocarcinoma(19;0.00153)|all cancers(22;0.00186)|Lung(60;0.0863)			TGCACCATGCGGTAGCGGTTC	0.692													9	12	---	---	---	---	PASS
NSUN2	54888	broad.mit.edu	37	5	6620312	6620312	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:6620312T>C	uc003jdu.2	-	7	787	c.722A>G	c.(721-723)CAT>CGT	p.H241R	NSUN2_uc003jdt.2_Missense_Mutation_p.H5R|NSUN2_uc011cmk.1_Missense_Mutation_p.H206R|NSUN2_uc003jdv.2_Missense_Mutation_p.H5R	NM_017755	NP_060225	Q08J23	NSUN2_HUMAN	NOL1/NOP2/Sun domain family, member 2	241						cytoplasm|nucleolus	tRNA (cytosine-5-)-methyltransferase activity|tRNA binding			ovary(1)	1						GGAGGCATCATGGTTGACCAC	0.498													12	79	---	---	---	---	PASS
PAPD7	11044	broad.mit.edu	37	5	6755026	6755026	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:6755026C>G	uc003jdx.1	+	13	1726	c.1597C>G	c.(1597-1599)CGG>GGG	p.R533G	PAPD7_uc011cmn.1_Missense_Mutation_p.R523G|PAPD7_uc010itl.1_Missense_Mutation_p.R353G	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	533					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						CACACACACACGGGACAGTCT	0.662													10	19	---	---	---	---	PASS
CDH12	1010	broad.mit.edu	37	5	21760770	21760770	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:21760770G>T	uc010iuc.2	-	10	1988	c.1530C>A	c.(1528-1530)GTC>GTA	p.V510V	CDH12_uc011cno.1_Silent_p.V470V|CDH12_uc003jgk.2_Silent_p.V510V|uc003jgj.2_Intron	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	510	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						CTGCAGCACTGACTATCTGAA	0.403										HNSCC(59;0.17)			28	111	---	---	---	---	PASS
CDH12	1010	broad.mit.edu	37	5	21975451	21975451	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:21975451G>T	uc010iuc.2	-	3	733	c.275C>A	c.(274-276)ACC>AAC	p.T92N	CDH12_uc011cno.1_Missense_Mutation_p.T92N|CDH12_uc003jgk.2_Missense_Mutation_p.T92N	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	92	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						TCCTGAGAGGGTGTATTTCAC	0.368										HNSCC(59;0.17)			19	80	---	---	---	---	PASS
CDH12	1010	broad.mit.edu	37	5	22078648	22078648	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:22078648C>A	uc010iuc.2	-	2	596	c.138G>T	c.(136-138)CGG>CGT	p.R46R	CDH12_uc011cno.1_Silent_p.R46R|CDH12_uc003jgk.2_Silent_p.R46R	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	46					adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						GGAAATGTGACCGTTGTCCTG	0.473										HNSCC(59;0.17)			38	154	---	---	---	---	PASS
RXFP3	51289	broad.mit.edu	37	5	33936910	33936910	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:33936910C>G	uc003jic.1	+	1	422	c.65C>G	c.(64-66)GCA>GGA	p.A22G		NM_016568	NP_057652	Q9NSD7	RL3R1_HUMAN	relaxin/insulin-like family peptide receptor 3	22	Extracellular (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1						GACAAGCTAGCAGAACTCTTC	0.607													11	56	---	---	---	---	PASS
UGT3A1	133688	broad.mit.edu	37	5	35965865	35965865	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:35965865C>T	uc003jjv.1	-	4	623	c.466G>A	c.(466-468)GAG>AAG	p.E156K	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.E156K|UGT3A1_uc011cor.1_Missense_Mutation_p.E122K|UGT3A1_uc003jjy.1_Missense_Mutation_p.E102K	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	156	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ACAAGCTTCTCAGCAATCAGG	0.398													20	62	---	---	---	---	PASS
UGT3A2	167127	broad.mit.edu	37	5	36035849	36035849	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:36035849C>T	uc003jjz.1	-	7	1616	c.1523G>A	c.(1522-1524)GGC>GAC	p.G508D	UGT3A2_uc011cos.1_Missense_Mutation_p.G474D|UGT3A2_uc011cot.1_Missense_Mutation_p.G206D	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	508	Cytoplasmic (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GACAGCCATGCCCAGCAGCTT	0.582													5	34	---	---	---	---	PASS
CARD6	84674	broad.mit.edu	37	5	40852718	40852718	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:40852718G>T	uc003jmg.2	+	3	1359	c.1284G>T	c.(1282-1284)GTG>GTT	p.V428V		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	428					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						AAGACATTGTGAAGAAGCAGT	0.453													19	66	---	---	---	---	PASS
C7	730	broad.mit.edu	37	5	40972654	40972654	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:40972654A>G	uc003jmh.2	+	15	2146	c.2032A>G	c.(2032-2034)AAG>GAG	p.K678E	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	678	Sushi 2.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CTCCAGCCTTAAGTGGAGTCC	0.488													25	174	---	---	---	---	PASS
TAF9	6880	broad.mit.edu	37	5	68661332	68661332	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:68661332C>A	uc003jwc.1	-	2	565	c.233G>T	c.(232-234)CGC>CTC	p.R78L	TAF9_uc003jwa.2_Intron|TAF9_uc003jwb.2_Intron|TAF9_uc003jwd.1_Missense_Mutation_p.R78L|TAF9_uc003jwe.1_Missense_Mutation_p.R78L|TAF9_uc003jwf.1_Missense_Mutation_p.R78L	NM_003187	NP_003178	Q16594	TAF9_HUMAN	TAF9 RNA polymerase II, TATA box binding	78					histone H3 acetylation|negative regulation of apoptosis|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of cell growth|positive regulation of response to cytokine stimulus|positive regulation of transcription from RNA polymerase II promoter|response to interleukin-1|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	MLL1 complex|PCAF complex|pre-snoRNP complex|STAGA complex|transcription factor TFIID complex|transcription factor TFTC complex	activating transcription factor binding|C2H2 zinc finger domain binding|p53 binding|transcription coactivator activity|transcription regulatory region DNA binding				0		Lung NSC(167;7.26e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;1.1e-56)|Epithelial(20;9.54e-53)|all cancers(19;2.2e-48)|Lung(70;0.0176)		CTGATCAGCGCGGCACTGGAT	0.408													20	51	---	---	---	---	PASS
BDP1	55814	broad.mit.edu	37	5	70806636	70806636	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:70806636G>T	uc003kbp.1	+	17	3980	c.3717G>T	c.(3715-3717)AAG>AAT	p.K1239N	BDP1_uc003kbn.1_Missense_Mutation_p.K1239N|BDP1_uc003kbo.2_Missense_Mutation_p.K1239N	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1239	Potential.|9 X 55 AA repeats of G-R-R-X-I-S-P-X-E-N- G-X-E-E-V-K-P-X-X-E-M-E-T-D-L-K-X-T-G-R- E-X-X-X-R-E-K-T-X-E-X-X-D-A-X-E-E-I-D-X- D-L-E-E-T.|8; approximate.				regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		AAAGGGAAAAGGTGCTAGCAG	0.403													7	137	---	---	---	---	PASS
AQPEP	206338	broad.mit.edu	37	5	115336143	115336143	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:115336143C>A	uc003kro.2	+	8	1693	c.1529C>A	c.(1528-1530)GCC>GAC	p.A510D	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	510	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						GCGTCTATGGCCCGGATGCTT	0.378													18	43	---	---	---	---	PASS
AQPEP	206338	broad.mit.edu	37	5	115336144	115336144	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:115336144C>A	uc003kro.2	+	8	1694	c.1530C>A	c.(1528-1530)GCC>GCA	p.A510A	AQPEP_uc003krp.2_RNA|AQPEP_uc003krq.2_RNA|AQPEP_uc003krr.2_RNA|AQPEP_uc003krs.2_RNA	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	510	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						CGTCTATGGCCCGGATGCTTT	0.378													18	42	---	---	---	---	PASS
CDKL3	51265	broad.mit.edu	37	5	133638306	133638306	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:133638306A>G	uc003kzf.3	-	12	1813	c.1694T>C	c.(1693-1695)GTG>GCG	p.V565A	CDKL3_uc011cxm.1_Missense_Mutation_p.V372A|CDKL3_uc011cxn.1_RNA|CDKL3_uc010jdw.2_Missense_Mutation_p.V172A|CDKL3_uc011cxo.1_Missense_Mutation_p.V270A|CDKL3_uc011cxp.1_Missense_Mutation_p.V270A|CDKL3_uc011cxq.1_Missense_Mutation_p.V372A	NM_001113575	NP_001107047	Q8IVW4	CDKL3_HUMAN	cyclin-dependent kinase-like 3 isoform 1	565						cytoplasm	ATP binding|cyclin-dependent protein kinase activity			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			ATTTTGATCCACGTTAAGTAA	0.299													3	4	---	---	---	---	PASS
CDC25C	995	broad.mit.edu	37	5	137621721	137621721	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:137621721G>A	uc003lcp.1	-	13	1533	c.1262C>T	c.(1261-1263)CCA>CTA	p.P421L	CDC25C_uc003lcq.1_Missense_Mutation_p.P348L|CDC25C_uc003lcr.1_Missense_Mutation_p.P421L|CDC25C_uc011cyp.1_Missense_Mutation_p.P438L|CDC25C_uc003lcs.1_Missense_Mutation_p.P499L	NM_001790	NP_001781	P30307	MPIP3_HUMAN	cell division cycle 25C isoform a	421	Rhodanese.				cell cycle checkpoint|cell division|cell proliferation|DNA replication|G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of mitosis|traversing start control point of mitotic cell cycle	cytosol|nucleoplasm	protein tyrosine phosphatase activity|WW domain binding			lung(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			CATATATTCTGGAAAGAAGTC	0.502													18	41	---	---	---	---	PASS
ETF1	2107	broad.mit.edu	37	5	137878583	137878583	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:137878583C>T	uc003ldc.3	-	2	190	c.25G>A	c.(25-27)GAC>AAC	p.D9N	ETF1_uc011cyv.1_5'Flank|ETF1_uc010jex.2_RNA|ETF1_uc003ldd.3_5'UTR	NM_004730	NP_004721	P62495	ERF1_HUMAN	eukaryotic translation termination factor 1	9					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|protein methylation|regulation of translational termination	cytoplasm	protein binding|ribosome binding|translation release factor activity, codon specific			ovary(2)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			ACGTTCCTGTCGGCAGCACTG	0.667													11	10	---	---	---	---	PASS
PCDHA2	56146	broad.mit.edu	37	5	140176677	140176677	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:140176677C>T	uc003lhd.2	+	1	2234	c.2128C>T	c.(2128-2130)CTG>TTG	p.L710L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Silent_p.L710L|PCDHA2_uc011czy.1_Silent_p.L710L	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	710	Helical; (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTATCCAGCCTGTTGGTGCT	0.682													23	48	---	---	---	---	PASS
PCDHA3	56145	broad.mit.edu	37	5	140182453	140182453	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:140182453C>T	uc003lhf.2	+	1	1671	c.1671C>T	c.(1669-1671)GAC>GAT	p.D557D	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.D557D	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	557	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCGTGCTGGACGAGAACGACA	0.687													18	41	---	---	---	---	PASS
DIAPH1	1729	broad.mit.edu	37	5	140966626	140966626	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:140966626G>C	uc003llb.3	-	3	424	c.283C>G	c.(283-285)CTC>GTC	p.L95V	DIAPH1_uc003llc.3_Missense_Mutation_p.L86V	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	95	GBD/FH3.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTCAAAGAGAACCAGCACT	0.428													25	45	---	---	---	---	PASS
ABLIM3	22885	broad.mit.edu	37	5	148577924	148577924	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:148577924C>A	uc003lpy.2	+	4	545	c.294C>A	c.(292-294)GGC>GGA	p.G98G	ABLIM3_uc003lpz.1_Silent_p.G98G|ABLIM3_uc003lqa.1_Missense_Mutation_p.A80D|ABLIM3_uc003lqb.2_Silent_p.G98G|ABLIM3_uc003lqc.1_Silent_p.G98G|ABLIM3_uc003lqd.1_Silent_p.G98G|ABLIM3_uc003lqf.2_Silent_p.G98G|ABLIM3_uc003lqe.1_Silent_p.G98G	NM_014945	NP_055760	O94929	ABLM3_HUMAN	actin binding LIM protein family, member 3	98	LIM zinc-binding 2.				axon guidance|cytoskeleton organization	cytoplasm	actin binding|zinc ion binding			ovary(2)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGGCCCTGGGCCGCACTTACC	0.632													9	14	---	---	---	---	PASS
GABRA6	2559	broad.mit.edu	37	5	161128573	161128573	+	Nonsense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr5:161128573G>T	uc003lyu.2	+	9	1494	c.1156G>T	c.(1156-1158)GAG>TAG	p.E386*	GABRA6_uc003lyv.2_Nonsense_Mutation_p.E157*	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	386	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTCATCTTCCGAGGCCAATAA	0.453										TCGA Ovarian(5;0.080)			27	30	---	---	---	---	PASS
BMP5	653	broad.mit.edu	37	6	55620414	55620414	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:55620414A>G	uc003pcq.2	-	7	1994	c.1282T>C	c.(1282-1284)TCT>CCT	p.S428P	BMP5_uc011dxf.1_Missense_Mutation_p.S391P	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	428					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			TACAGAACAGAGATGGCATTT	0.348													27	30	---	---	---	---	PASS
DST	667	broad.mit.edu	37	6	56335002	56335002	+	Missense_Mutation	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:56335002T>A	uc003pdf.2	-	90	16071	c.16043A>T	c.(16042-16044)TAT>TTT	p.Y5348F	DST_uc003pcz.3_Missense_Mutation_p.Y5170F|DST_uc011dxj.1_Missense_Mutation_p.Y5199F|DST_uc011dxk.1_Missense_Mutation_p.Y5210F|DST_uc003pcy.3_Missense_Mutation_p.Y4844F|DST_uc003pcw.3_5'Flank|DST_uc003pcx.3_5'Flank	NM_001144769	NP_001138241	Q03001	DYST_HUMAN	dystonin isoform 2	7256	EF-hand 2.|2 (Potential).				cell adhesion|cell cycle arrest|cell motility|hemidesmosome assembly|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization|maintenance of cell polarity|microtubule cytoskeleton organization|response to wounding	actin cytoskeleton|axon|axon part|basement membrane|cell cortex|cell leading edge|cytoplasmic membrane-bounded vesicle|endoplasmic reticulum membrane|hemidesmosome|hemidesmosome|integral to membrane|intermediate filament|intermediate filament cytoskeleton|microtubule cytoskeleton|microtubule plus end|nuclear envelope|sarcomere|Z disc	actin binding|calcium ion binding|integrin binding|microtubule plus-end binding|protein binding|protein C-terminus binding|protein homodimerization activity			ovary(7)|central_nervous_system(6)|upper_aerodigestive_tract(1)	14	Lung NSC(77;0.103)		LUSC - Lung squamous cell carcinoma(124;0.0485)|Lung(124;0.0956)			TACAAATTCATAGTAGTCAAT	0.403													17	14	---	---	---	---	PASS
RWDD2A	112611	broad.mit.edu	37	6	83905545	83905545	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:83905545T>C	uc003pjx.3	+	3	704	c.433T>C	c.(433-435)TCT>CCT	p.S145P	PGM3_uc003pjv.2_5'Flank|PGM3_uc003pjw.2_5'Flank|PGM3_uc011dyz.1_5'Flank|RWDD2A_uc011dza.1_Missense_Mutation_p.S70P	NM_033411	NP_219479	Q9UIY3	RWD2A_HUMAN	RWD domain containing 2A	145											0		all_cancers(76;2.38e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00217)		BRCA - Breast invasive adenocarcinoma(397;0.045)		ATATGAACCATCTACACAAGC	0.428													41	66	---	---	---	---	PASS
C6orf165	154313	broad.mit.edu	37	6	88173891	88173891	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:88173891G>T	uc003plv.2	+	13	1884	c.1792G>T	c.(1792-1794)GCT>TCT	p.A598S	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Missense_Mutation_p.A410S|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	598										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		GATTTACTTGGCTGGTCTTCG	0.468													16	40	---	---	---	---	PASS
FUT9	10690	broad.mit.edu	37	6	96651800	96651800	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:96651800C>T	uc003pop.3	+	3	1110	c.769C>T	c.(769-771)CTA>TTA	p.L257L		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	257	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		CACGGAAAAGCTATACAATGC	0.343													8	26	---	---	---	---	PASS
PREP	5550	broad.mit.edu	37	6	105825364	105825364	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:105825364C>G	uc003prc.2	-	3	354	c.151G>C	c.(151-153)GTG>CTG	p.V51L		NM_002726	NP_002717	P48147	PPCE_HUMAN	prolyl endopeptidase	51					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_cancers(87;0.000128)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0344)|Lung NSC(302;0.191)|Colorectal(196;0.202)			Oxytocin(DB00107)	AGAAATGGCACAGTAATCTTA	0.353													17	38	---	---	---	---	PASS
AIM1	202	broad.mit.edu	37	6	106973217	106973217	+	Silent	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:106973217T>A	uc003prh.2	+	4	3631	c.3144T>A	c.(3142-3144)TCT>TCA	p.S1048S		NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1048	Beta/gamma crystallin 'Greek key' 1.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		ATTGCAGTTCTTGGAGCCTCT	0.398													34	67	---	---	---	---	PASS
TAAR6	319100	broad.mit.edu	37	6	132891957	132891957	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:132891957C>A	uc011eck.1	+	1	497	c.497C>A	c.(496-498)GCT>GAT	p.A166D		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	166	Helical; Name=4; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TACAGCGGTGCTGTGTTCTAC	0.502													67	117	---	---	---	---	PASS
HBS1L	10767	broad.mit.edu	37	6	135300358	135300358	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:135300358T>C	uc003qez.2	-	14	1853	c.1646A>G	c.(1645-1647)CAT>CGT	p.H549R	HBS1L_uc003qey.2_Missense_Mutation_p.H385R|HBS1L_uc011ecy.1_Missense_Mutation_p.H273R|HBS1L_uc011ecz.1_Missense_Mutation_p.H385R|HBS1L_uc011eda.1_Missense_Mutation_p.H507R	NM_006620	NP_006611	Q9Y450	HBS1L_HUMAN	Hsp70 subfamily B suppressor 1-like protein	549					signal transduction		GTP binding|GTPase activity|translation elongation factor activity			skin(2)	2	Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0046)|GBM - Glioblastoma multiforme(68;0.00702)		AAGACTAACATGATCGCCTGC	0.428													7	37	---	---	---	---	PASS
SASH1	23328	broad.mit.edu	37	6	148865626	148865626	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:148865626C>T	uc003qme.1	+	18	3495	c.3020C>T	c.(3019-3021)CCC>CTC	p.P1007L	SASH1_uc011eeb.1_Missense_Mutation_p.P768L|SASH1_uc003qmf.1_Missense_Mutation_p.P417L	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	1007	Pro-rich.						protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		CCCATGGGCCCCAGTGGGGCC	0.632													16	20	---	---	---	---	PASS
SYNE1	23345	broad.mit.edu	37	6	152527420	152527420	+	Silent	SNP	C	T	T	rs140577642		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr6:152527420C>T	uc010kiw.2	-	126	23504	c.22902G>A	c.(22900-22902)TCG>TCA	p.S7634S	SYNE1_uc010kiv.2_Silent_p.S2158S|SYNE1_uc003qos.3_Silent_p.S2158S|SYNE1_uc003qot.3_Silent_p.S7563S|SYNE1_uc003qou.3_Silent_p.S7634S|SYNE1_uc003qor.3_Silent_p.S534S	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7634	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CACTGTCCGCCGAGAGAAGGA	0.507										HNSCC(10;0.0054)			10	25	---	---	---	---	PASS
GLCCI1	113263	broad.mit.edu	37	7	8124623	8124623	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:8124623G>C	uc003srk.2	+	7	1833	c.1274G>C	c.(1273-1275)CGA>CCA	p.R425P		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	425											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		GGATGTGAGCGAGTGAAGGTC	0.458													8	29	---	---	---	---	PASS
DNAH11	8701	broad.mit.edu	37	7	21757518	21757518	+	Nonsense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:21757518C>G	uc003svc.2	+	44	7161	c.7130C>G	c.(7129-7131)TCA>TGA	p.S2377*		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2377					microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						ACCATCACTTCAATTCCTGAG	0.408									Kartagener_syndrome				29	63	---	---	---	---	PASS
STK31	56164	broad.mit.edu	37	7	23775399	23775399	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:23775399G>T	uc003sws.3	+	7	793	c.726G>T	c.(724-726)TTG>TTT	p.L242F	STK31_uc003swt.3_Missense_Mutation_p.L219F|STK31_uc011jze.1_Missense_Mutation_p.L242F|STK31_uc010kuq.2_Missense_Mutation_p.L219F	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	242							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						CCATTCCTTTGTGGGGGCATA	0.453													12	41	---	---	---	---	PASS
AQP1	358	broad.mit.edu	37	7	30951557	30951557	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:30951557G>T	uc003tbv.1	+	1	90	c.33G>T	c.(31-33)TGG>TGT	p.W11C	AQP1_uc011kac.1_Intron	NM_198098	NP_932766	P29972	AQP1_HUMAN	aquaporin 1	11	Helical; Name=Helix 1.				ammonium transport|cell volume homeostasis|cellular hyperosmotic response|cellular response to cAMP|cellular response to copper ion|cellular response to dexamethasone stimulus|cellular response to hydrogen peroxide|cellular response to hypoxia|cellular response to mechanical stimulus|cellular response to mercury ion|cellular response to nitric oxide|cellular response to retinoic acid|cellular response to salt stress|cellular response to UV|cerebrospinal fluid secretion|cGMP biosynthetic process|establishment or maintenance of actin cytoskeleton polarity|lateral ventricle development|maintenance of symbiont-containing vacuole via substance secreted by host|negative regulation of apoptosis|odontogenesis|pancreatic juice secretion|positive regulation of angiogenesis|positive regulation of fibroblast proliferation|positive regulation of saliva secretion|renal water transport|response to drug|transepithelial water transport	apical plasma membrane|basal plasma membrane|brush border membrane|cytoplasm|integral to plasma membrane|nuclear membrane|sarcolemma|symbiont-containing vacuole	ammonia transmembrane transporter activity|carbon dioxide transmembrane transporter activity|glycerol transmembrane transporter activity|intracellular cGMP activated cation channel activity|nitric oxide transmembrane transporter activity|potassium channel activity|potassium ion transmembrane transporter activity|protein binding|water channel activity				0		Melanoma(862;0.16)			Acetazolamide(DB00819)	AGCTCTTCTGGAGGGCAGTGG	0.612													4	16	---	---	---	---	PASS
MRPS24	64951	broad.mit.edu	37	7	43906368	43906368	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:43906368T>C	uc003tit.1	-	4	485	c.434A>G	c.(433-435)TAC>TGC	p.Y145C		NM_032014	NP_114403	Q96EL2	RT24_HUMAN	mitochondrial ribosomal protein S24 precursor	145					translation	mitochondrial large ribosomal subunit|mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						TTTGTAAAAGTAGGACAGCAA	0.493													15	41	---	---	---	---	PASS
DBNL	28988	broad.mit.edu	37	7	44099661	44099661	+	Silent	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:44099661T>C	uc003tjp.3	+	12	1160	c.1062T>C	c.(1060-1062)GGT>GGC	p.G354G	DBNL_uc003tjo.3_Silent_p.G355G|DBNL_uc003tjr.3_Silent_p.G227G|DBNL_uc003tjq.3_Silent_p.G363G|DBNL_uc011kbm.1_Silent_p.G330G|DBNL_uc011kbn.1_Silent_p.G251G|DBNL_uc011kbo.1_Silent_p.G255G|DBNL_uc011kbp.1_Silent_p.G306G|DBNL_uc011kbq.1_Silent_p.G279G|DBNL_uc011kbr.1_Silent_p.G303G|DBNL_uc011kbs.1_Silent_p.G259G	NM_001014436	NP_001014436	Q9UJU6	DBNL_HUMAN	drebrin-like isoform b	354					activation of JUN kinase activity|cellular component disassembly involved in apoptosis|endocytosis|Rac protein signal transduction	cell cortex|cytoskeleton|cytosol|lamellipodium	actin binding|enzyme activator activity|identical protein binding			skin(1)	1						AGCAGCAAGGTGCTGGCTCTG	0.607													4	15	---	---	---	---	PASS
ABCA13	154664	broad.mit.edu	37	7	48556400	48556400	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:48556400C>A	uc003toq.2	+	52	13745	c.13720C>A	c.(13720-13722)CTA>ATA	p.L4574I	ABCA13_uc010kys.1_Missense_Mutation_p.L1649I|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.L304I	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4574	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						CTATGTCTCACTAAACTTCAT	0.428													30	106	---	---	---	---	PASS
CLIP2	7461	broad.mit.edu	37	7	73803459	73803459	+	Nonsense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:73803459G>T	uc003uam.2	+	13	2917	c.2590G>T	c.(2590-2592)GAG>TAG	p.E864*	CLIP2_uc003uan.2_Nonsense_Mutation_p.E829*	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	864	Potential.					microtubule associated complex				skin(3)	3						TAAGTCAGGCGAGAAGAAGGT	0.627													7	36	---	---	---	---	PASS
CACNA2D1	781	broad.mit.edu	37	7	81624184	81624184	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:81624184C>T	uc003uhr.1	-	20	1990	c.1734G>A	c.(1732-1734)GAG>GAA	p.E578E		NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	597	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CAATTCTTACCTCATCTTGAG	0.264													8	31	---	---	---	---	PASS
COL1A2	1278	broad.mit.edu	37	7	94035032	94035032	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:94035032C>A	uc003ung.1	+	11	1005	c.534C>A	c.(532-534)GGC>GGA	p.G178G	COL1A2_uc011kib.1_Intron|COL1A2_uc010lfh.1_RNA	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	178					axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GCTTCAAAGGCATTAGGGTGA	0.363										HNSCC(75;0.22)			25	92	---	---	---	---	PASS
DOCK4	9732	broad.mit.edu	37	7	111462506	111462506	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:111462506G>A	uc003vfx.2	-	27	3111	c.2842C>T	c.(2842-2844)CTG>TTG	p.L948L	DOCK4_uc003vfw.2_Silent_p.L389L|DOCK4_uc003vfy.2_Silent_p.L984L	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	948					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				ATCTGCAGCAGGAAATCCTTG	0.388													9	31	---	---	---	---	PASS
CADPS2	93664	broad.mit.edu	37	7	122114483	122114483	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:122114483G>A	uc010lkp.2	-	12	2113	c.1950C>T	c.(1948-1950)CTC>CTT	p.L650L	CADPS2_uc011knx.1_Silent_p.L21L|CADPS2_uc003vkg.3_Silent_p.L347L|CADPS2_uc010lkq.2_Silent_p.L647L	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	650					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						TCTGCCTCTGGAGTATTCTAA	0.383													15	61	---	---	---	---	PASS
KLHDC10	23008	broad.mit.edu	37	7	129764369	129764369	+	Missense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:129764369A>T	uc003vpj.1	+	6	993	c.858A>T	c.(856-858)TTA>TTT	p.L286F	KLHDC10_uc003vpk.1_Missense_Mutation_p.L257F|KLHDC10_uc010lmb.1_Missense_Mutation_p.L183F	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	286	Kelch 4.										0						CATATTCCTTAAACAAGGTAT	0.368													13	37	---	---	---	---	PASS
SSPO	23145	broad.mit.edu	37	7	149482226	149482226	+	Missense_Mutation	SNP	G	C	C	rs149954255	by1000genomes	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:149482226G>C	uc010lpk.2	+	21	2900	c.2900G>C	c.(2899-2901)CGC>CCC	p.R967P	SSPO_uc010lpl.1_Missense_Mutation_p.A303P	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	967					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CAGGACGAGCGCTGTGTGCCT	0.637													11	29	---	---	---	---	PASS
SLC4A2	6522	broad.mit.edu	37	7	150773153	150773153	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:150773153C>T	uc003wit.3	+	22	3781	c.3525C>T	c.(3523-3525)GCC>GCT	p.A1175A	SLC4A2_uc011kve.1_Silent_p.A1166A|SLC4A2_uc003wiu.3_Silent_p.A1161A|SLC4A2_uc003wiv.3_Silent_p.A369A|uc011kvf.1_Missense_Mutation_p.G98S	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	1175	Membrane (anion exchange).|Helical; (Potential).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCTGCCTGGCCCTGCTCTGGG	0.657													20	39	---	---	---	---	PASS
MLL3	58508	broad.mit.edu	37	7	151962221	151962221	+	Nonsense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr7:151962221A>T	uc003wla.2	-	8	1305	c.1086T>A	c.(1084-1086)TGT>TGA	p.C362*		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	362	PHD-type 1.|RING-type.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGTGCTGACCACAAGTAGTAC	0.448			N		medulloblastoma								18	294	---	---	---	---	PASS
INTS10	55174	broad.mit.edu	37	8	19687965	19687965	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:19687965G>T	uc003wzj.2	+	10	1320	c.1189G>T	c.(1189-1191)GTA>TTA	p.V397L		NM_018142	NP_060612	Q9NVR2	INT10_HUMAN	integrator complex subunit 10	397					snRNA processing	integrator complex	protein binding			ovary(1)	1				Colorectal(111;0.057)|COAD - Colon adenocarcinoma(73;0.215)		TCGTCACATTGTAGTCAATAA	0.398													20	26	---	---	---	---	PASS
INTS10	55174	broad.mit.edu	37	8	19687967	19687967	+	Silent	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:19687967A>T	uc003wzj.2	+	10	1322	c.1191A>T	c.(1189-1191)GTA>GTT	p.V397V		NM_018142	NP_060612	Q9NVR2	INT10_HUMAN	integrator complex subunit 10	397					snRNA processing	integrator complex	protein binding			ovary(1)	1				Colorectal(111;0.057)|COAD - Colon adenocarcinoma(73;0.215)		GTCACATTGTAGTCAATAAAG	0.403													19	27	---	---	---	---	PASS
STAR	6770	broad.mit.edu	37	8	38008297	38008297	+	Missense_Mutation	SNP	A	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:38008297A>C	uc003xkv.1	-	1	304	c.40T>G	c.(40-42)TAC>GAC	p.Y14D	STAR_uc010lwc.1_Missense_Mutation_p.Y14D	NM_001007243	NP_001007244	P49675	STAR_HUMAN	steroidogenic acute regulatory protein isoform	14					C21-steroid hormone biosynthetic process	mitochondrial intermembrane space	cholesterol transporter activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.0151)|Lung NSC(58;0.0295)		READ - Rectum adenocarcinoma(644;0.188)		ATGTGTCTGTAGGAGCTCCCA	0.418													17	395	---	---	---	---	PASS
DDHD2	23259	broad.mit.edu	37	8	38105316	38105316	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:38105316A>G	uc003xlb.2	+	10	1588	c.1211A>G	c.(1210-1212)GAT>GGT	p.D404G	DDHD2_uc003xlc.2_Missense_Mutation_p.D404G|DDHD2_uc011lbl.1_Missense_Mutation_p.D216G|DDHD2_uc003xld.2_Missense_Mutation_p.D23G	NM_015214	NP_056029	O94830	DDHD2_HUMAN	DDHD domain containing 2 isoform 1	404	SAM.				lipid catabolic process	centrosome	hydrolase activity|metal ion binding			large_intestine(1)|ovary(1)	2	Colorectal(12;0.000442)	all_lung(54;0.0657)|Lung NSC(58;0.175)	BRCA - Breast invasive adenocarcinoma(5;3.76e-25)|COAD - Colon adenocarcinoma(9;0.0977)			GAATTCTTTGATATCTTTGAG	0.303													43	272	---	---	---	---	PASS
WHSC1L1	54904	broad.mit.edu	37	8	38205604	38205604	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:38205604C>T	uc003xli.2	-	2	604	c.86G>A	c.(85-87)CGT>CAT	p.R29H	WHSC1L1_uc011lbm.1_Missense_Mutation_p.R29H|WHSC1L1_uc010lwe.2_Missense_Mutation_p.R29H|WHSC1L1_uc003xlj.2_Missense_Mutation_p.R29H	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	29					cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			ATCCTCCTGACGGATGTTGGC	0.468			T	NUP98	AML								56	340	---	---	---	---	PASS
ADAM2	2515	broad.mit.edu	37	8	39694659	39694659	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:39694659G>A	uc003xnj.2	-	2	203	c.128C>T	c.(127-129)TCG>TTG	p.S43L	ADAM2_uc003xnk.2_Missense_Mutation_p.S43L|ADAM2_uc011lck.1_Missense_Mutation_p.S43L|ADAM2_uc003xnl.2_Missense_Mutation_p.S43L	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	43					cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CATTACCTGCGATTCAATTCC	0.303													11	195	---	---	---	---	PASS
PRKDC	5591	broad.mit.edu	37	8	48743256	48743256	+	Silent	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:48743256G>C	uc003xqi.2	-	62	8364	c.8307C>G	c.(8305-8307)GTC>GTG	p.V2769V	PRKDC_uc003xqj.2_Silent_p.V2769V|PRKDC_uc011ldh.1_Intron	NM_006904	NP_008835	P78527	PRKDC_HUMAN	protein kinase, DNA-activated, catalytic	2769	KIP-binding.				cellular response to insulin stimulus|double-strand break repair via nonhomologous end joining|peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter	DNA-dependent protein kinase-DNA ligase 4 complex|transcription factor complex	ATP binding|DNA binding|DNA-dependent protein kinase activity|transcription factor binding			lung(12)|central_nervous_system(9)|ovary(6)|skin(4)|large_intestine(3)	34		all_cancers(86;0.0336)|all_epithelial(80;0.00111)|Lung NSC(129;0.00363)|all_lung(136;0.00391)				TGTACAGAACGACCTGGGCAT	0.483								NHEJ					13	76	---	---	---	---	PASS
LYN	4067	broad.mit.edu	37	8	56866519	56866519	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:56866519G>C	uc003xsk.3	+	8	1048	c.766G>C	c.(766-768)GGG>CGG	p.G256R	LYN_uc003xsl.3_Missense_Mutation_p.G235R	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	256	Protein kinase.|ATP (By similarity).				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			GCTTGGCGCTGGGCAGTTTGG	0.527													17	67	---	---	---	---	PASS
CLVS1	157807	broad.mit.edu	37	8	62212665	62212665	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:62212665C>A	uc003xuh.2	+	2	603	c.279C>A	c.(277-279)CTC>CTA	p.L93L	CLVS1_uc003xug.2_Silent_p.L93L|CLVS1_uc003xui.2_Intron|CLVS1_uc010lyp.2_Silent_p.L93L	NM_173519	NP_775790	Q8IUQ0	CLVS1_HUMAN	retinaldehyde binding protein 1-like 1	93					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			skin(4)|ovary(1)	5						CCTTTAGACTCCTGGCTCAGT	0.488													25	32	---	---	---	---	PASS
ZFHX4	79776	broad.mit.edu	37	8	77616888	77616888	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:77616888C>A	uc003yav.2	+	2	952	c.565C>A	c.(565-567)CCA>ACA	p.P189T	ZFHX4_uc003yat.1_Missense_Mutation_p.P189T|ZFHX4_uc003yau.1_Missense_Mutation_p.P189T|ZFHX4_uc003yaw.1_Missense_Mutation_p.P189T	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	189						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GTCGTTCTACCCACAGATCAT	0.483										HNSCC(33;0.089)			7	40	---	---	---	---	PASS
MMP16	4325	broad.mit.edu	37	8	89130996	89130996	+	Nonsense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:89130996G>T	uc003yeb.3	-	5	1086	c.804C>A	c.(802-804)TAC>TAA	p.Y268*	MMP16_uc003yec.2_Nonsense_Mutation_p.Y268*	NM_005941	NP_005932	P51512	MMP16_HUMAN	matrix metalloproteinase 16 isoform 1	268	Extracellular (Potential).				collagen catabolic process|proteolysis	cell surface|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)|urinary_tract(1)|skin(1)|kidney(1)	8						CCATGTACTGGTAAAATGGAG	0.418													38	49	---	---	---	---	PASS
PKHD1L1	93035	broad.mit.edu	37	8	110489571	110489571	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:110489571C>A	uc003yne.2	+	53	9139	c.9035C>A	c.(9034-9036)CCT>CAT	p.P3012H		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3012	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GATTGCTTTCCTGTACATCCG	0.408										HNSCC(38;0.096)			20	60	---	---	---	---	PASS
CSMD3	114788	broad.mit.edu	37	8	113304900	113304900	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:113304900C>G	uc003ynu.2	-	55	8813	c.8654G>C	c.(8653-8655)AGA>ACA	p.R2885T	CSMD3_uc003yns.2_Missense_Mutation_p.R2087T|CSMD3_uc003ynt.2_Missense_Mutation_p.R2845T|CSMD3_uc011lhx.1_Missense_Mutation_p.R2716T	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2885	Extracellular (Potential).|Sushi 19.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TCCACTTGTTCTTCCATAAAT	0.418										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			19	58	---	---	---	---	PASS
COL14A1	7373	broad.mit.edu	37	8	121259859	121259859	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:121259859C>A	uc003yox.2	+	21	2752	c.2487C>A	c.(2485-2487)TCC>TCA	p.S829S	COL14A1_uc003yoy.2_Silent_p.S507S	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	829	Fibronectin type-III 7.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			CAGTACCATCCTCGGGGCCCC	0.468													17	29	---	---	---	---	PASS
COL22A1	169044	broad.mit.edu	37	8	139790639	139790639	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:139790639C>G	uc003yvd.2	-	15	2162	c.1715G>C	c.(1714-1716)GGA>GCA	p.G572A		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	572	Pro-rich.|Gly-rich.|Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCCAGGTGGTCCTTGGGGCCC	0.552										HNSCC(7;0.00092)			13	21	---	---	---	---	PASS
COL22A1	169044	broad.mit.edu	37	8	139790640	139790640	+	Nonsense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:139790640C>A	uc003yvd.2	-	15	2161	c.1714G>T	c.(1714-1716)GGA>TGA	p.G572*		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	572	Pro-rich.|Gly-rich.|Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCAGGTGGTCCTTGGGGCCCC	0.552										HNSCC(7;0.00092)			13	21	---	---	---	---	PASS
GPR20	2843	broad.mit.edu	37	8	142367017	142367017	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:142367017C>T	uc003ywf.2	-	2	1096	c.1007G>A	c.(1006-1008)GGC>GAC	p.G336D		NM_005293	NP_005284	Q99678	GPR20_HUMAN	G protein-coupled receptor 20	336	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(97;4.32e-16)|all_epithelial(106;6.61e-14)|Lung NSC(106;9.4e-06)|all_lung(105;1.35e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0415)			GTGATGACGGCCTGAGCCCTT	0.682													7	29	---	---	---	---	PASS
CYP11B1	1584	broad.mit.edu	37	8	143961141	143961141	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:143961141C>T	uc003yxi.2	-	1	96	c.89G>A	c.(88-90)CGG>CAG	p.R30Q	CYP11B1_uc003yxj.2_Missense_Mutation_p.R30Q|CYP11B1_uc010mey.2_Missense_Mutation_p.R30Q	NM_000497	NP_000488	P15538	C11B1_HUMAN	cytochrome P450, family 11, subfamily B,	30					aldosterone biosynthetic process|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|glucose homeostasis|immune response|regulation of blood pressure|response to stress|xenobiotic metabolic process	mitochondrial inner membrane	electron carrier activity|steroid 11-beta-monooxygenase activity			ovary(3)	3	all_cancers(97;4.74e-11)|all_epithelial(106;2.06e-08)|Lung NSC(106;0.000228)|all_lung(105;0.000633)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)				Mitotane(DB00648)	CCTGGGGACCCGGGCGGCTCT	0.647									Familial_Hyperaldosteronism_type_I				37	47	---	---	---	---	PASS
KIFC2	90990	broad.mit.edu	37	8	145692606	145692606	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:145692606G>T	uc003zcz.2	+	4	416	c.351G>T	c.(349-351)CTG>CTT	p.L117L	CYHR1_uc003zcv.2_5'Flank|CYHR1_uc003zcw.2_5'Flank|CYHR1_uc003zcx.2_5'Flank|CYHR1_uc003zcy.2_5'Flank	NM_145754	NP_665697	Q96AC6	KIFC2_HUMAN	kinesin family member C2	117					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein binding			ovary(2)|central_nervous_system(1)	3	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.1e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			TCCCCTCACTGTTGACAGTGA	0.662											OREG0019057	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	42	43	---	---	---	---	PASS
DOCK8	81704	broad.mit.edu	37	9	464218	464218	+	Nonstop_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:464218A>T	uc003zgf.2	+	48	6411	c.6299A>T	c.(6298-6300)TAA>TTA	p.*2100L	DOCK8_uc010mgu.2_Nonstop_Mutation_p.*1402L|DOCK8_uc010mgv.2_Nonstop_Mutation_p.*2000L|DOCK8_uc003zgk.2_Nonstop_Mutation_p.*1558L	NM_203447	NP_982272	Q8NF50	DOCK8_HUMAN	dedicator of cytokinesis 8	2100					blood coagulation	cytosol	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			ovary(3)|central_nervous_system(3)	6		all_cancers(5;2.13e-17)|all_epithelial(5;2.15e-12)|all_lung(10;6.69e-11)|Lung NSC(10;1.08e-10)|Acute lymphoblastic leukemia(5;0.000242)|all_hematologic(5;0.00317)|Breast(48;0.0151)|Prostate(43;0.128)		all cancers(5;9.3e-07)|GBM - Glioblastoma multiforme(5;2.41e-06)|Epithelial(6;0.00557)|Lung(218;0.00942)		CAGGGCAGCTAAGAAAAGCCA	0.488													21	39	---	---	---	---	PASS
C9orf46	55848	broad.mit.edu	37	9	5431953	5431953	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:5431953T>C	uc003zjc.2	-	3	229	c.25A>G	c.(25-27)ATG>GTG	p.M9V	C9orf46_uc003zjd.2_Missense_Mutation_p.M9V	NM_018465	NP_060935	Q9HBL7	CI046_HUMAN	hypothetical protein LOC55848	9						integral to membrane				ovary(1)	1	all_hematologic(13;0.158)	Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.00106)|Lung(218;0.125)		CTTTCATTCATAGATTTTGAA	0.294													4	7	---	---	---	---	PASS
CNTLN	54875	broad.mit.edu	37	9	17409420	17409420	+	Silent	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:17409420A>G	uc003zmz.2	+	16	2768	c.2742A>G	c.(2740-2742)CAA>CAG	p.Q914Q	CNTLN_uc003zmy.2_Silent_p.Q915Q|CNTLN_uc010mio.2_Silent_p.Q594Q	NM_017738	NP_060208	Q9NXG0	CNTLN_HUMAN	centlein isoform 1	915						centriole|membrane	two-component sensor activity			pancreas(1)	1				GBM - Glioblastoma multiforme(50;6.14e-10)		GCCAAACACAAGGAAAAGAAA	0.333													42	87	---	---	---	---	PASS
UNC13B	10497	broad.mit.edu	37	9	35377549	35377549	+	Missense_Mutation	SNP	G	T	T	rs142442316	by1000genomes	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:35377549G>T	uc003zwq.2	+	15	1965	c.1673G>T	c.(1672-1674)CGA>CTA	p.R558L	UNC13B_uc003zwr.2_Missense_Mutation_p.R558L	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	558					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			ATGAAGATCCGAGAGCGAAAT	0.502													30	34	---	---	---	---	PASS
SEMA4D	10507	broad.mit.edu	37	9	92011737	92011737	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:92011737T>C	uc004aqo.1	-	8	901	c.329A>G	c.(328-330)AAC>AGC	p.N110S	SEMA4D_uc011ltm.1_Missense_Mutation_p.N110S|SEMA4D_uc011ltn.1_RNA|SEMA4D_uc011lto.1_RNA|SEMA4D_uc004aqp.1_Missense_Mutation_p.N108S	NM_006378	NP_006369	Q92854	SEM4D_HUMAN	semaphorin 4D isoform 1	110	Sema.|Extracellular (Potential).				anti-apoptosis|axon guidance|cell adhesion|immune response	integral to membrane|plasma membrane	receptor activity|receptor binding			ovary(1)|pancreas(1)	2						CCGGATGTAGTTGAGGCACTC	0.582													4	7	---	---	---	---	PASS
ZNF169	169841	broad.mit.edu	37	9	97062614	97062614	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:97062614G>T	uc004aum.1	+	5	879	c.774G>T	c.(772-774)GGG>GGT	p.G258G		NM_194320	NP_919301	Q14929	ZN169_HUMAN	zinc finger protein 169	258						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				CACACACCGGGGAGAAGCCAT	0.567													8	23	---	---	---	---	PASS
FKTN	2218	broad.mit.edu	37	9	108366570	108366570	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:108366570C>T	uc004bcr.2	+	6	660	c.444C>T	c.(442-444)GAC>GAT	p.D148D	FKTN_uc011lvx.1_Silent_p.D148D|FKTN_uc004bcs.2_Silent_p.D148D|FKTN_uc011lvy.1_Silent_p.D148D|FKTN_uc010mtm.2_Silent_p.D16D	NM_001079802	NP_001073270	O75072	FKTN_HUMAN	fukutin	148	Lumenal (Potential).				muscle organ development|negative regulation of cell proliferation|negative regulation of JNK cascade|nervous system development|regulation of protein glycosylation	cis-Golgi network|endoplasmic reticulum|extracellular space|Golgi membrane|integral to membrane|nucleus	transferase activity			breast(2)|ovary(1)	3						CCCGGCTAGACGGGATAGACT	0.473													23	28	---	---	---	---	PASS
MED27	9442	broad.mit.edu	37	9	134955031	134955031	+	Silent	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:134955031G>C	uc004cbe.1	-	1	223	c.201C>G	c.(199-201)CTC>CTG	p.L67L	MED27_uc004cbf.1_Silent_p.L67L|MED27_uc011mco.1_Silent_p.L67L|MED27_uc004cbg.3_Silent_p.L67L	NM_004269	NP_004260	Q6P2C8	MED27_HUMAN	mediator complex subunit 27	67					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	cytoplasm|nucleolus|transcription factor complex	protein binding|transcription coactivator activity			skin(1)	1		Myeloproliferative disorder(178;0.206)		OV - Ovarian serous cystadenocarcinoma(145;6.82e-06)|Epithelial(140;0.000193)		GTACCTACTTGAGGTCCCGGT	0.642													11	31	---	---	---	---	PASS
NOTCH1	4851	broad.mit.edu	37	9	139412360	139412360	+	Missense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:139412360A>T	uc004chz.2	-	8	1285	c.1285T>A	c.(1285-1287)TGC>AGC	p.C429S		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	429	Extracellular (Potential).|EGF-like 11; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GTGTTGATGCACTTGCCCGCA	0.662			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			23	9	---	---	---	---	PASS
NOTCH1	4851	broad.mit.edu	37	9	139413085	139413085	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:139413085G>A	uc004chz.2	-	6	1057	c.1057C>T	c.(1057-1059)CGT>TGT	p.R353C		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	353	Extracellular (Potential).|EGF-like 9; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity	p.R353H(1)		haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GAGGCCACACGGTCATGGCAG	0.652			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			6	9	---	---	---	---	PASS
MIR126	406913	broad.mit.edu	37	9	139565062	139565062	+	RNA	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr9:139565062A>T	hsa-mir-126|MI0000471	+			c.9A>T			EGFL7_uc004cid.2_Intron|EGFL7_uc004cif.2_Intron|EGFL7_uc004cig.2_RNA|EGFL7_uc010nbp.2_Intron|EGFL7_uc004cie.2_Intron|EGFL7_uc004cih.2_Intron																	0						TCCGCTGGCGACGGGACATTA	0.592													14	6	---	---	---	---	PASS
LARP4B	23185	broad.mit.edu	37	10	863800	863800	+	Silent	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:863800T>C	uc001ifs.1	-	14	1601	c.1560A>G	c.(1558-1560)CCA>CCG	p.P520P		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	520							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						ACGGAGGCTTTGGTGGCGTTG	0.562													20	31	---	---	---	---	PASS
TAF3	83860	broad.mit.edu	37	10	8051097	8051097	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:8051097G>A	uc010qbd.1	+	5	2372	c.2372G>A	c.(2371-2373)AGG>AAG	p.R791K		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	791	Pro-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						TCGCAGAACAGGCCGAAGAcc	0.299													4	7	---	---	---	---	PASS
MCM10	55388	broad.mit.edu	37	10	13214719	13214719	+	Silent	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:13214719A>G	uc001ima.2	+	5	650	c.549A>G	c.(547-549)CTA>CTG	p.L183L	MCM10_uc001imb.2_Silent_p.L182L|MCM10_uc001imc.2_Silent_p.L182L	NM_182751	NP_877428	Q7L590	MCM10_HUMAN	minichromosome maintenance complex component 10	183					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3						TCCCTGCGCTACCAAGAACCA	0.458													12	29	---	---	---	---	PASS
NEBL	10529	broad.mit.edu	37	10	21250653	21250653	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:21250653G>C	uc001iqk.2	-	4	659	c.305C>G	c.(304-306)ACG>AGG	p.T102R		NM_213569	NP_998734	O76041	NEBL_HUMAN	nebulette non-muscle isoform	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						AGGAGTGTCCGTGACGATGCT	0.443													35	78	---	---	---	---	PASS
NRP1	8829	broad.mit.edu	37	10	33543123	33543123	+	Splice_Site	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:33543123C>A	uc001iwx.3	-	6	1338	c.815_splice	c.e6-1	p.D272_splice	NRP1_uc001iwv.3_Splice_Site_p.D272_splice|NRP1_uc009xlz.2_Splice_Site_p.D272_splice|NRP1_uc001iww.3_Splice_Site_p.D91_splice|NRP1_uc001iwy.3_Splice_Site_p.D272_splice|NRP1_uc001iwz.2_Splice_Site_p.D272_splice|NRP1_uc001ixa.2_Splice_Site_p.D272_splice|NRP1_uc001ixb.1_Splice_Site_p.D272_splice|NRP1_uc001ixc.1_Splice_Site_p.D272_splice	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a						axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	CATTTGAAATCTGAAGGGAAA	0.398													13	24	---	---	---	---	PASS
ANKRD30A	91074	broad.mit.edu	37	10	37505199	37505199	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:37505199G>C	uc001iza.1	+	32	2891	c.2792G>C	c.(2791-2793)GGA>GCA	p.G931A		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	987						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CAACGTACAGGAAAAATGGAA	0.333													13	54	---	---	---	---	PASS
ALOX5	240	broad.mit.edu	37	10	45878095	45878095	+	Silent	SNP	C	A	A	rs140946470		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:45878095C>A	uc001jce.2	+	2	414	c.315C>A	c.(313-315)ACC>ACA	p.T105T	ALOX5_uc009xmt.2_Silent_p.T105T|ALOX5_uc010qfg.1_Silent_p.T105T	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	105	PLAT.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	GCTGGATCACCGGCGATGTCG	0.592													8	17	---	---	---	---	PASS
LRRC18	474354	broad.mit.edu	37	10	50121473	50121473	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:50121473G>C	uc001jhd.2	-	1	808	c.728C>G	c.(727-729)CCC>CGC	p.P243R	WDFY4_uc001jha.3_Intron|LRRC18_uc001jhe.1_Missense_Mutation_p.P243R	NM_001006939	NP_001006940	Q8N456	LRC18_HUMAN	leucine rich repeat containing 18	243						cytoplasm				ovary(1)|pancreas(1)	2						CATGGAATTGGGTGAGATCAG	0.537													45	108	---	---	---	---	PASS
SLC18A3	6572	broad.mit.edu	37	10	50820151	50820151	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:50820151G>C	uc001jhw.2	+	1	1805	c.1365G>C	c.(1363-1365)ATG>ATC	p.M455I	CHAT_uc001jhv.1_Intron|CHAT_uc001jhx.1_5'Flank|CHAT_uc001jhy.1_5'Flank|CHAT_uc001jia.2_5'Flank|CHAT_uc001jhz.2_5'Flank|CHAT_uc010qgs.1_5'Flank	NM_003055	NP_003046	Q16572	VACHT_HUMAN	vesicular acetylcholine transporter	455	Helical; (Potential).				neurotransmitter secretion	clathrin sculpted acetylcholine transport vesicle membrane|integral to plasma membrane|membrane fraction	acetylcholine transmembrane transporter activity			ovary(2)	2						GCCTTGGCATGGGACTGGCCA	0.637													6	23	---	---	---	---	PASS
A1CF	29974	broad.mit.edu	37	10	52573785	52573785	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:52573785C>A	uc001jjj.2	-	10	1367	c.1179G>T	c.(1177-1179)GTG>GTT	p.V393V	A1CF_uc010qhn.1_Silent_p.V393V|A1CF_uc001jji.2_Silent_p.V385V|A1CF_uc001jjh.2_Silent_p.V393V|A1CF_uc010qho.1_Silent_p.V401V|A1CF_uc009xov.2_Silent_p.V385V	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	393	Required for nuclear localization.				cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						CCAGTCCTCTCACTCCCGCAG	0.463													8	30	---	---	---	---	PASS
CTNNA3	29119	broad.mit.edu	37	10	67680202	67680202	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:67680202C>A	uc009xpn.1	-	18	2697	c.2574G>T	c.(2572-2574)TTG>TTT	p.L858F	CTNNA3_uc001jmw.2_Missense_Mutation_p.L858F	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	858					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						CTCTTTTAATCAAGGGTTTTT	0.473													14	53	---	---	---	---	PASS
RGR	5995	broad.mit.edu	37	10	86007505	86007505	+	Splice_Site	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:86007505T>C	uc001kdc.1	+	2	274	c.236_splice	c.e2+2	p.R79_splice	RGR_uc001kdb.1_Splice_Site_p.P62_splice|RGR_uc001kdd.1_Splice_Site_p.R79_splice|RGR_uc001kde.1_Splice_Site_p.R79_splice	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2						phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						CCTTCTCCGGTACCAGCCCCC	0.637													9	31	---	---	---	---	PASS
ZNF518A	9849	broad.mit.edu	37	10	97918053	97918053	+	Silent	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:97918053A>G	uc001klp.2	+	6	2831	c.1974A>G	c.(1972-1974)GCA>GCG	p.A658A	ZNF518A_uc001klo.1_Silent_p.A128A|ZNF518A_uc001klq.2_Silent_p.A658A|ZNF518A_uc001klr.2_Silent_p.A658A	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	658					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		CAGGAACAGCAGTGTATGAAA	0.373													22	45	---	---	---	---	PASS
LOXL4	84171	broad.mit.edu	37	10	100010855	100010855	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:100010855C>T	uc001kpa.1	-	14	2318	c.2167G>A	c.(2167-2169)GGG>AGG	p.G723R		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	723	Lysyl-oxidase like.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		ACCCGGTGCCCATCATACTTG	0.522													6	14	---	---	---	---	PASS
PDZD7	79955	broad.mit.edu	37	10	102783315	102783315	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:102783315G>T	uc001kso.1	-	4	635	c.420C>A	c.(418-420)AGC>AGA	p.S140R	PDZD7_uc001ksn.2_Missense_Mutation_p.S140R	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	140	PDZ 1.					cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		TGCTCTCCAGGCTCAGCCCAT	0.657													8	21	---	---	---	---	PASS
SORCS1	114815	broad.mit.edu	37	10	108337279	108337279	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:108337279T>C	uc001kym.2	-	26	3414	c.3406A>G	c.(3406-3408)ACT>GCT	p.T1136A	SORCS1_uc001kyl.2_Intron|SORCS1_uc009xxs.2_Intron|SORCS1_uc001kyn.1_3'UTR	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	1136	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		CCAGGTTGAGTAGAAGGGGAG	0.493													23	42	---	---	---	---	PASS
PNLIPRP1	5407	broad.mit.edu	37	10	118354329	118354329	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:118354329G>A	uc001lco.1	+	5	436	c.418G>A	c.(418-420)GTG>ATG	p.V140M	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.V140M|PNLIPRP1_uc009xys.1_RNA	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	140					lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		TGCCAACAACGTGCGAGTGGT	0.602													9	17	---	---	---	---	PASS
RAB11FIP2	22841	broad.mit.edu	37	10	119805520	119805520	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:119805520G>C	uc001ldj.1	-	1	595	c.155C>G	c.(154-156)GCT>GGT	p.A52G	RAB11FIP2_uc009xyz.1_Missense_Mutation_p.A52G|CASC2_uc001ldm.3_5'Flank|CASC2_uc009xzc.2_5'Flank|CASC2_uc001ldk.2_5'Flank|CASC2_uc009xza.2_5'Flank|CASC2_uc009xzb.2_5'Flank	NM_014904	NP_055719	Q7L804	RFIP2_HUMAN	RAB11 family interacting protein 2	52	C2.|Necessary for its cellular translocation to the plasma membrane.				protein transport	plasma membrane|recycling endosome membrane	protein homodimerization activity				0		Colorectal(252;0.235)		all cancers(201;0.0238)		GGTTTTCTCAGCTACAGAGGT	0.448													16	35	---	---	---	---	PASS
C10orf120	399814	broad.mit.edu	37	10	124457592	124457592	+	Missense_Mutation	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:124457592T>A	uc001lgn.2	-	3	697	c.665A>T	c.(664-666)GAT>GTT	p.D222V		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	222										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				TTGGTTGGCATCATCACAATT	0.398													12	23	---	---	---	---	PASS
DOCK1	1793	broad.mit.edu	37	10	129172398	129172398	+	Missense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr10:129172398A>T	uc001ljt.2	+	35	3596	c.3532A>T	c.(3532-3534)ATG>TTG	p.M1178L	DOCK1_uc010qun.1_Missense_Mutation_p.M1199L|DOCK1_uc009yaq.2_Missense_Mutation_p.M173L	NM_001380	NP_001371	Q14185	DOCK1_HUMAN	dedicator of cytokinesis 1	1178	DHR-2.				apoptosis|axon guidance|blood coagulation|integrin-mediated signaling pathway|phagocytosis, engulfment|small GTPase mediated signal transduction	cytosol|membrane	GTP binding|GTPase activator activity|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding			central_nervous_system(4)|ovary(2)|lung(1)|breast(1)|kidney(1)	9		all_epithelial(44;2.3e-07)|all_lung(145;0.00466)|Lung NSC(174;0.00685)|Colorectal(57;0.0107)|Renal(717;0.0113)|Breast(234;0.0492)|all_neural(114;0.108)|all_hematologic(284;0.14)		BRCA - Breast invasive adenocarcinoma(275;0.0221)|Colorectal(40;0.115)		TGTGCGCTTAATGGAAAGGCT	0.423													10	17	---	---	---	---	PASS
OR51A4	401666	broad.mit.edu	37	11	4967961	4967961	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:4967961T>C	uc010qys.1	-	1	370	c.370A>G	c.(370-372)AGA>GGA	p.R124G		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	124	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTAGGAATCTATCAAATGAC	0.448													49	77	---	---	---	---	PASS
TRIM22	10346	broad.mit.edu	37	11	5719761	5719761	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:5719761G>C	uc001mbr.2	+	4	1013	c.736G>C	c.(736-738)GTA>CTA	p.V246L	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Missense_Mutation_p.V214L|TRIM22_uc009yes.2_Missense_Mutation_p.V242L|TRIM22_uc010qzm.1_Missense_Mutation_p.V74L|TRIM22_uc009yeu.2_Missense_Mutation_p.V57L	NM_006074	NP_006065	Q8IYM9	TRI22_HUMAN	tripartite motif-containing 22	246	Potential.				immune response|interspecies interaction between organisms|protein trimerization|response to virus	Cajal body|Golgi apparatus|nuclear speck	ligase activity|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding				0		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;7.54e-09)|BRCA - Breast invasive adenocarcinoma(625;0.14)		GGGATCGTCAGTAGAGATGCT	0.547													6	12	---	---	---	---	PASS
OR52L1	338751	broad.mit.edu	37	11	6007601	6007601	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:6007601C>A	uc001mcd.2	-	1	615	c.560G>T	c.(559-561)TGC>TTC	p.C187F		NM_001005173	NP_001005173	Q8NGH7	O52L1_HUMAN	olfactory receptor, family 52, subfamily L,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;1.98e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTGGCTTGGCAGAAGATAAG	0.493													31	48	---	---	---	---	PASS
C11orf16	56673	broad.mit.edu	37	11	8947056	8947056	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:8947056C>G	uc001mhb.3	-	5	1282	c.1158G>C	c.(1156-1158)TGG>TGC	p.W386C	C11orf16_uc001mhc.3_Missense_Mutation_p.W386C	NM_020643	NP_065694	Q9NQ32	CK016_HUMAN	hypothetical protein LOC56673	386										upper_aerodigestive_tract(1)|pancreas(1)	2				Epithelial(150;4.11e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0234)		TCCAATACCTCCACTCAGGCT	0.592													13	40	---	---	---	---	PASS
ABCC8	6833	broad.mit.edu	37	11	17464298	17464298	+	Silent	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:17464298G>C	uc001mnc.2	-	10	1725	c.1599C>G	c.(1597-1599)CTC>CTG	p.L533L	ABCC8_uc010rcy.1_Silent_p.L532L	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	533	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	CAAAGGCCCTGAGGCTGGTCA	0.607													10	29	---	---	---	---	PASS
ANO5	203859	broad.mit.edu	37	11	22249067	22249067	+	Silent	SNP	C	A	A	rs149040903		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:22249067C>A	uc001mqi.2	+	7	900	c.583C>A	c.(583-585)CGG>AGG	p.R195R	ANO5_uc001mqj.2_Silent_p.R194R	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	195	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						CAGCAGACATCGGCAGGAGCT	0.453													21	47	---	---	---	---	PASS
BBOX1	8424	broad.mit.edu	37	11	27148880	27148880	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:27148880C>T	uc001mre.1	+	9	1412	c.1044C>T	c.(1042-1044)GGC>GGT	p.G348G	BBOX1_uc009yih.1_Silent_p.G348G|BBOX1_uc001mrg.1_Silent_p.G348G	NM_003986	NP_003977	O75936	BODG_HUMAN	gamma-butyrobetaine dioxygenase	348					carnitine biosynthetic process	actin cytoskeleton|cytosol|intracellular membrane-bounded organelle	gamma-butyrobetaine dioxygenase activity|iron ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1					Succinic acid(DB00139)|Vitamin C(DB00126)	TACTTCATGGCCGACGTAGCT	0.408													14	28	---	---	---	---	PASS
OR5D18	219438	broad.mit.edu	37	11	55587801	55587801	+	Silent	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:55587801C>G	uc010rin.1	+	1	696	c.696C>G	c.(694-696)GTC>GTG	p.V232V		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				TGCGTTCAGTCAGTGGGCGCC	0.493													27	67	---	---	---	---	PASS
OR5J2	282775	broad.mit.edu	37	11	55944513	55944513	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:55944513G>T	uc010rjb.1	+	1	420	c.420G>T	c.(418-420)AAG>AAT	p.K140N		NM_001005492	NP_001005492	Q8NH18	OR5J2_HUMAN	olfactory receptor, family 5, subfamily J,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|large_intestine(1)|breast(1)|pancreas(1)	4	Esophageal squamous(21;0.00693)					CTGATAGAAAGTGTGTGGAGC	0.453													17	52	---	---	---	---	PASS
OR5T2	219464	broad.mit.edu	37	11	56000524	56000524	+	Silent	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:56000524A>G	uc010rjc.1	-	1	138	c.138T>C	c.(136-138)ACT>ACC	p.T46T		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	46	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AGGTAACTTCAGTGACATTCT	0.363													16	45	---	---	---	---	PASS
OR5M9	390162	broad.mit.edu	37	11	56230145	56230145	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:56230145C>A	uc010rjj.1	-	1	733	c.733G>T	c.(733-735)GCT>TCT	p.A245S		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	245	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					ATAGAAACAGCCGTCAAGTGG	0.532													7	20	---	---	---	---	PASS
OR9Q2	219957	broad.mit.edu	37	11	57958617	57958617	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:57958617C>G	uc010rka.1	+	1	655	c.655C>G	c.(655-657)CTG>GTG	p.L219V		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	219	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				GGTATCCTACCTGTTTATCAT	0.522													11	47	---	---	---	---	PASS
OR1S1	219959	broad.mit.edu	37	11	57982498	57982498	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:57982498G>C	uc010rkc.1	+	1	282	c.282G>C	c.(280-282)ATG>ATC	p.M94I		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				TCCCCAAAATGCTGGTGAATA	0.408													22	117	---	---	---	---	PASS
OR1S1	219959	broad.mit.edu	37	11	57982499	57982499	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:57982499C>T	uc010rkc.1	+	1	283	c.283C>T	c.(283-285)CTG>TTG	p.L95L		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CCCCAAAATGCTGGTGAATAT	0.403													20	117	---	---	---	---	PASS
OR5B21	219968	broad.mit.edu	37	11	58274962	58274962	+	Missense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:58274962A>T	uc010rki.1	-	1	617	c.617T>A	c.(616-618)TTC>TAC	p.F206Y		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CAGGAGGGTGAAAAAGACGTT	0.473													12	31	---	---	---	---	PASS
DAGLA	747	broad.mit.edu	37	11	61490431	61490431	+	Silent	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:61490431C>G	uc001nsa.2	+	4	519	c.408C>G	c.(406-408)CTC>CTG	p.L136L		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	136	Extracellular (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		ATGTCACCCTCGGTACGTCTG	0.592													14	47	---	---	---	---	PASS
FADS3	3995	broad.mit.edu	37	11	61645000	61645000	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:61645000C>A	uc001nsm.2	-	7	1021	c.868G>T	c.(868-870)GTG>TTG	p.V290L	FADS3_uc001nsn.2_Missense_Mutation_p.V166L	NM_021727	NP_068373	Q9Y5Q0	FADS3_HUMAN	fatty acid desaturase 3	290	Lumenal (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane|membrane fraction	heme binding|oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water			ovary(1)|pancreas(1)	2						TGCATGCACACCAGCATGTAC	0.637													9	24	---	---	---	---	PASS
PPP2R5B	5526	broad.mit.edu	37	11	64695280	64695280	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:64695280G>A	uc001oby.2	+	4	988	c.403G>A	c.(403-405)GTG>ATG	p.V135M	PPP2R5B_uc001obz.2_Missense_Mutation_p.V135M	NM_006244	NP_006235	Q15173	2A5B_HUMAN	beta isoform of regulatory subunit B56, protein	135					signal transduction	cytoplasm|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(2)	2						TCAGATCTCAGTGAATATCTT	0.468													19	40	---	---	---	---	PASS
C11orf2	738	broad.mit.edu	37	11	64878989	64878989	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:64878989C>T	uc001ocr.1	+	10	2319	c.2279C>T	c.(2278-2280)GCT>GTT	p.A760V	TM7SF2_uc001oct.2_5'Flank|TM7SF2_uc010rny.1_5'Flank|TM7SF2_uc001ocu.2_5'Flank|TM7SF2_uc001ocv.2_5'Flank|C11orf2_uc001ocs.1_Missense_Mutation_p.A636V	NM_013265	NP_037397	Q9UID3	FFR_HUMAN	chromosome 11 open reading frame 2	760					lipid transport|protein transport	Golgi apparatus|integral to membrane					0						GTGGCCTCTGCTGCCCTGCGC	0.637													13	20	---	---	---	---	PASS
TMEM134	80194	broad.mit.edu	37	11	67234994	67234994	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:67234994G>C	uc001olq.1	-	3	375	c.307C>G	c.(307-309)CGC>GGC	p.R103G	TMEM134_uc001olp.1_Missense_Mutation_p.R94G|TMEM134_uc001olr.1_Missense_Mutation_p.R103G|TMEM134_uc001ols.1_RNA|TMEM134_uc001olt.1_RNA|TMEM134_uc010rpt.1_Missense_Mutation_p.R94G|TMEM134_uc009yrx.2_Missense_Mutation_p.R103G|TMEM134_uc010rpu.1_Missense_Mutation_p.S97R|TMEM134_uc001olu.3_Missense_Mutation_p.S106R	NM_025124	NP_079400	Q9H6X4	TM134_HUMAN	transmembrane protein 134 isoform a	103	Cytoplasmic (Potential).					integral to membrane					0						TTGTAGGAGCGCTGGGTGCTG	0.682													4	35	---	---	---	---	PASS
C2CD3	26005	broad.mit.edu	37	11	73785376	73785376	+	Nonsense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:73785376G>A	uc001ouu.2	-	24	5100	c.4873C>T	c.(4873-4875)CAG>TAG	p.Q1625*	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1625	C2 2.			Q -> R (in Ref. 1; BAC86334).		centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GGGCCCTCCTGCGTCAGGCGG	0.567													5	44	---	---	---	---	PASS
CCDC89	220388	broad.mit.edu	37	11	85397009	85397009	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:85397009C>A	uc001pau.1	-	1	312	c.165G>T	c.(163-165)CTG>CTT	p.L55L		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	55	Potential.					cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				CCTCCTCTGACAGTCCCCGGA	0.547													13	40	---	---	---	---	PASS
HEPHL1	341208	broad.mit.edu	37	11	93826744	93826744	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:93826744C>A	uc001pep.2	+	13	2529	c.2372C>A	c.(2371-2373)ACG>AAG	p.T791K	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	791	Plastocyanin-like 5.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				AGGGAATATACGGATGGAGAA	0.463													60	99	---	---	---	---	PASS
HEPHL1	341208	broad.mit.edu	37	11	93836182	93836182	+	Missense_Mutation	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:93836182T>A	uc001pep.2	+	15	2835	c.2678T>A	c.(2677-2679)GTG>GAG	p.V893E	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	893	Plastocyanin-like 5.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				GTAAACTTTGTGAAGGTAAGG	0.378													8	59	---	---	---	---	PASS
CNTN5	53942	broad.mit.edu	37	11	99827644	99827644	+	Missense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:99827644A>T	uc001pga.2	+	8	1119	c.780A>T	c.(778-780)CAA>CAT	p.Q260H	CNTN5_uc009ywv.1_Missense_Mutation_p.Q260H|CNTN5_uc001pfz.2_Missense_Mutation_p.Q260H|CNTN5_uc001pgb.2_Missense_Mutation_p.Q186H	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	260	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		CTAAAGTCCAAACATCAGATG	0.458													20	31	---	---	---	---	PASS
ANGPTL5	253935	broad.mit.edu	37	11	101771162	101771162	+	Silent	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:101771162T>C	uc001pgl.2	-	7	1256	c.660A>G	c.(658-660)CTA>CTG	p.L220L		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	220	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		AAAATTAACCTAGAAGATCTC	0.348													19	28	---	---	---	---	PASS
ZC3H12C	85463	broad.mit.edu	37	11	110034020	110034020	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:110034020C>A	uc009yxw.2	+	5	1222	c.1171C>A	c.(1171-1173)CTT>ATT	p.L391I	ZC3H12C_uc010rwc.1_Missense_Mutation_p.L392I|ZC3H12C_uc010rwd.1_Missense_Mutation_p.L392I|ZC3H12C_uc001pkr.3_Missense_Mutation_p.L360I	NM_033390	NP_203748	Q9C0D7	ZC12C_HUMAN	zinc finger CCCH-type containing 12C	391							endonuclease activity|nucleic acid binding|zinc ion binding				0		all_cancers(61;3.24e-13)|all_epithelial(67;1.27e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.72e-06)|BRCA - Breast invasive adenocarcinoma(274;1.17e-05)|all cancers(92;9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0279)		TGATGACCCTCTTGGCAGACA	0.393													4	35	---	---	---	---	PASS
TMPRSS5	80975	broad.mit.edu	37	11	113570795	113570795	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:113570795C>A	uc001poc.3	-	2	221	c.99G>T	c.(97-99)CAG>CAT	p.Q33H	TMPRSS5_uc009yys.2_5'UTR|TMPRSS5_uc009yyt.2_Intron|TMPRSS5_uc001pod.3_Intron|TMPRSS5_uc010rww.1_Missense_Mutation_p.Q23H|TMPRSS5_uc009yyu.2_Intron|TMPRSS5_uc010rwx.1_Intron	NM_030770	NP_110397	Q9H3S3	TMPS5_HUMAN	transmembrane protease, serine 5	33	Cytoplasmic (Potential).				proteolysis	integral to membrane|plasma membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(1)	1		all_cancers(61;2.71e-16)|all_epithelial(67;1e-09)|Melanoma(852;1.46e-05)|all_hematologic(158;0.00014)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Prostate(24;0.0421)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;2.75e-06)|Epithelial(105;6.34e-05)|all cancers(92;0.000502)		TACTGGGATGCTGCTGGTCTC	0.617													3	9	---	---	---	---	PASS
CLDN25	644672	broad.mit.edu	37	11	113650742	113650742	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:113650742G>C	uc009yyw.1	+	1	225	c.225G>C	c.(223-225)CAG>CAC	p.Q75H		NM_001101389	NP_001094859	C9JDP6	CLD25_HUMAN	claudin 25	75	Extracellular (Potential).					integral to membrane|tight junction	structural molecule activity				0						CTCTGCCCCAGGAGCTCCAGG	0.562													47	112	---	---	---	---	PASS
APOA4	337	broad.mit.edu	37	11	116692455	116692455	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:116692455C>T	uc001pps.1	-	3	423	c.319G>A	c.(319-321)GAG>AAG	p.E107K		NM_000482	NP_000473			apolipoprotein A-IV precursor												0	all_hematologic(175;0.0487)	Breast(348;0.0126)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0564)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;8.54e-06)|Epithelial(105;1.62e-05)|all cancers(92;0.000165)|OV - Ovarian serous cystadenocarcinoma(223;0.148)		ctcagctcctccagctccttc	0.025													4	10	---	---	---	---	PASS
DSCAML1	57453	broad.mit.edu	37	11	117308664	117308664	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:117308664C>T	uc001prh.1	-	25	4561	c.4559G>A	c.(4558-4560)AGC>AAC	p.S1520N		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1460	Fibronectin type-III 5.|Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		AGAGCCCACGCTGTTCTTGGC	0.637													9	25	---	---	---	---	PASS
OR6X1	390260	broad.mit.edu	37	11	123624810	123624810	+	Nonsense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr11:123624810G>T	uc010rzy.1	-	1	417	c.417C>A	c.(415-417)TGC>TGA	p.C139*		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	139	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		CCAGCTGCAGGCAGAGTTTGC	0.522													21	78	---	---	---	---	PASS
SLC6A13	6540	broad.mit.edu	37	12	330173	330173	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:330173C>A	uc001qic.1	-	15	1803	c.1750G>T	c.(1750-1752)GCT>TCT	p.A584S	SLC6A13_uc009zdj.1_Missense_Mutation_p.A574S|SLC6A13_uc010sdl.1_Missense_Mutation_p.A492S	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	584	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			GTGGCGGGAGCCGAGGGTCCT	0.657													8	11	---	---	---	---	PASS
VWF	7450	broad.mit.edu	37	12	6061009	6061009	+	Splice_Site	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:6061009C>A	uc001qnn.1	-	50	8405	c.8155_splice	c.e50+1	p.C2719_splice	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein						blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	AACGCACTCACATGTGTCACA	0.448													12	28	---	---	---	---	PASS
USP5	8078	broad.mit.edu	37	12	6964980	6964980	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:6964980C>T	uc001qri.3	+	3	358	c.299C>T	c.(298-300)GCT>GTT	p.A100V	USP5_uc001qrh.3_Missense_Mutation_p.A100V	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	100					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						ACGCGGCTGGCTATTGGTGAG	0.577													12	29	---	---	---	---	PASS
C1R	715	broad.mit.edu	37	12	7187955	7187955	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:7187955G>A	uc010sfy.1	-	10	2058	c.1999C>T	c.(1999-2001)CGC>TGC	p.R667C		NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	667	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GCCACCCAGCGATCAGTGTTC	0.567													10	41	---	---	---	---	PASS
CLEC4C	170482	broad.mit.edu	37	12	7882298	7882298	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:7882298C>A	uc001qtg.1	-	6	710	c.536G>T	c.(535-537)CGT>CTT	p.R179L	CLEC4C_uc001qth.1_Missense_Mutation_p.R179L|CLEC4C_uc001qti.1_Missense_Mutation_p.R148L	NM_130441	NP_569708	Q8WTT0	CLC4C_HUMAN	C-type lectin domain family 4, member C isoform	179	Extracellular (Potential).|C-type lectin.				innate immune response	integral to membrane	sugar binding			ovary(2)|skin(1)	3				Kidney(36;0.0915)		TATCGCACAACGCTCATCAAG	0.418													17	39	---	---	---	---	PASS
GRIN2B	2904	broad.mit.edu	37	12	14019093	14019093	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:14019093G>T	uc001rbt.2	-	2	229	c.50C>A	c.(49-51)GCC>GAC	p.A17D		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	17					response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGCCAGGACGGCCAACACCAA	0.557													9	31	---	---	---	---	PASS
PLEKHA5	54477	broad.mit.edu	37	12	19473549	19473549	+	Silent	SNP	A	G	G	rs146976787		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:19473549A>G	uc001reb.2	+	13	1985	c.1899A>G	c.(1897-1899)GTA>GTG	p.V633V	PLEKHA5_uc010sie.1_Silent_p.V736V|PLEKHA5_uc001rea.2_Silent_p.V691V|PLEKHA5_uc009zin.2_Silent_p.V391V|PLEKHA5_uc010sif.1_Silent_p.V564V|PLEKHA5_uc010sig.1_Silent_p.V552V|PLEKHA5_uc010sih.1_Silent_p.V525V|PLEKHA5_uc001rec.1_Silent_p.V379V|PLEKHA5_uc009zio.2_5'Flank	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	633							1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					CTGAAGAAGTAGATATTGATG	0.308													22	67	---	---	---	---	PASS
SLCO1C1	53919	broad.mit.edu	37	12	20858991	20858991	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:20858991C>G	uc001rej.3	+	5	735	c.380C>G	c.(379-381)GCA>GGA	p.A127G	SLCO1C1_uc010sii.1_Missense_Mutation_p.A127G|SLCO1C1_uc010sij.1_Missense_Mutation_p.A127G|SLCO1C1_uc009zip.2_Intron|SLCO1C1_uc001rei.2_Missense_Mutation_p.A127G|SLCO1C1_uc010sik.1_Missense_Mutation_p.A9G	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	127	Helical; Name=3; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					CTGCTCATTGCAATGCCTCAG	0.378													59	161	---	---	---	---	PASS
LDHB	3945	broad.mit.edu	37	12	21790085	21790085	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:21790085T>C	uc001rfc.2	-	6	775	c.757A>G	c.(757-759)ATT>GTT	p.I253V	LDHB_uc001rfd.2_Missense_Mutation_p.I253V|LDHB_uc001rfe.2_Missense_Mutation_p.I253V	NM_002300	NP_002291	P07195	LDHB_HUMAN	L-lactate dehydrogenase B	253					glycolysis|pyruvate metabolic process	cytosol	L-lactate dehydrogenase activity			breast(2)|ovary(1)	3					NADH(DB00157)	CTTAATCCAATAGCCCAGTTG	0.323													21	46	---	---	---	---	PASS
ABCC9	10060	broad.mit.edu	37	12	21998678	21998678	+	Nonsense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:21998678G>T	uc001rfi.1	-	24	2975	c.2955C>A	c.(2953-2955)TAC>TAA	p.Y985*	ABCC9_uc001rfh.2_Nonsense_Mutation_p.Y985*|ABCC9_uc001rfj.1_Nonsense_Mutation_p.Y949*	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	985	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAGATGTCAGGTAGCGCCAGC	0.443													14	41	---	---	---	---	PASS
SLC38A1	81539	broad.mit.edu	37	12	46591839	46591839	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:46591839C>T	uc001rpa.2	-	15	1385	c.1127G>A	c.(1126-1128)CGT>CAT	p.R376H	SLC38A1_uc001rpb.2_Missense_Mutation_p.R376H|SLC38A1_uc001rpc.2_Missense_Mutation_p.R376H|SLC38A1_uc001rpd.2_Missense_Mutation_p.R376H|SLC38A1_uc001rpe.2_Missense_Mutation_p.R376H|SLC38A1_uc009zkj.1_Missense_Mutation_p.R376H	NM_030674	NP_109599	Q9H2H9	S38A1_HUMAN	amino acid transporter system A1	376	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|neurotransmitter uptake	integral to membrane|plasma membrane	sodium:amino acid symporter activity			ovary(2)|skin(2)|central_nervous_system(1)	5	Lung SC(27;0.137)|Renal(347;0.236)		all cancers(1;0.00805)|OV - Ovarian serous cystadenocarcinoma(5;0.0106)|Epithelial(2;0.0344)			TAAAGATGAACGAACCTGCAA	0.373													16	33	---	---	---	---	PASS
AQP6	363	broad.mit.edu	37	12	50367133	50367133	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:50367133C>T	uc001rvr.1	+	1	514	c.177C>T	c.(175-177)GCC>GCT	p.A59A	AQP6_uc001rvp.1_Intron|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	59	Helical; (Potential).				excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						TACAGATTGCCATCACCTTCA	0.637													17	70	---	---	---	---	PASS
POU6F1	5463	broad.mit.edu	37	12	51584140	51584140	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:51584140C>T	uc001rxy.2	-	5	988	c.796G>A	c.(796-798)GAA>AAA	p.E266K	POU6F1_uc001rxz.2_Missense_Mutation_p.E266K|POU6F1_uc001rya.2_Missense_Mutation_p.E266K	NM_002702	NP_002693	Q14863	PO6F1_HUMAN	POU class 6 homeobox 1	266	Homeobox.				brain development|heart development|muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TTAGCAATTTCAGTGATCTCC	0.547													28	54	---	---	---	---	PASS
KRT5	3852	broad.mit.edu	37	12	52914004	52914004	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:52914004G>A	uc001san.2	-	1	240	c.77C>T	c.(76-78)TCT>TTT	p.S26F	KRT5_uc009zmh.2_Missense_Mutation_p.S26F	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	26	Head.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GCGGGAGACAGACGGGGTGAT	0.662													12	21	---	---	---	---	PASS
OR10A7	121364	broad.mit.edu	37	12	55614955	55614955	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:55614955C>A	uc010spf.1	+	1	147	c.147C>A	c.(145-147)ACC>ACA	p.T49T		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	49	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						TCACAGTTACCAGTGTGGATC	0.393													58	158	---	---	---	---	PASS
ITGA7	3679	broad.mit.edu	37	12	56091005	56091005	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:56091005G>T	uc001shh.2	-	11	1794	c.1574C>A	c.(1573-1575)ACT>AAT	p.T525N	ITGA7_uc001shg.2_Missense_Mutation_p.T521N|ITGA7_uc010sps.1_Missense_Mutation_p.T428N|ITGA7_uc009znw.2_5'Flank|ITGA7_uc009znx.2_Missense_Mutation_p.T408N	NM_001144996	NP_001138468	Q13683	ITA7_HUMAN	integrin alpha 7 isoform 1 precursor	565	Extracellular (Potential).				cell-matrix adhesion|integrin-mediated signaling pathway|muscle organ development|regulation of cell shape	integrin complex	receptor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5						CTCACCCACAGTAGGGCTATA	0.607													7	11	---	---	---	---	PASS
DDIT3	1649	broad.mit.edu	37	12	57910715	57910715	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:57910715C>T	uc001soi.2	-	4	567	c.387G>A	c.(385-387)AGG>AGA	p.R129R	MARS_uc001sof.1_Intron|DDIT3_uc009zps.2_Silent_p.R152R|DDIT3_uc009zpt.2_Silent_p.R152R	NM_004083	NP_004074	P35638	DDIT3_HUMAN	DNA-damage-inducible transcript 3	129					cell cycle arrest|cell redox homeostasis|mRNA transcription from RNA polymerase II promoter|negative regulation of determination of dorsal identity|regulation of DNA-dependent transcription in response to stress|response to DNA damage stimulus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding		FUS/DDIT3(623)|EWSR1/DDIT3(43)	soft_tissue(666)|large_intestine(1)|central_nervous_system(1)|lung(1)|skin(1)|ovary(1)	671						GTGCCACTTTCCTTTCATTCT	0.542			T	FUS	liposarcoma								26	92	---	---	---	---	PASS
KIF5A	3798	broad.mit.edu	37	12	57966467	57966467	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:57966467G>T	uc001sor.1	+	15	1882	c.1674G>T	c.(1672-1674)CTG>CTT	p.L558L	KIF5A_uc010srr.1_Silent_p.L469L	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	558					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						TGAAGGATCTGAGCGAGTTCA	0.552													29	80	---	---	---	---	PASS
OS9	10956	broad.mit.edu	37	12	58111934	58111934	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:58111934G>T	uc001spj.2	+	11	1199	c.1140G>T	c.(1138-1140)AAG>AAT	p.K380N	OS9_uc010srx.1_Missense_Mutation_p.K174N|OS9_uc001spk.2_Missense_Mutation_p.K380N|OS9_uc001spl.2_Missense_Mutation_p.K380N|OS9_uc001spm.2_Missense_Mutation_p.K380N|OS9_uc001spn.2_Missense_Mutation_p.K381N|OS9_uc010sry.1_Missense_Mutation_p.K348N|OS9_uc010srz.1_Missense_Mutation_p.K321N	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	380					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			CCCAGGGGAAGCCAAATATAG	0.527													5	20	---	---	---	---	PASS
PPFIA2	8499	broad.mit.edu	37	12	81688782	81688782	+	Silent	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:81688782T>A	uc001szo.1	-	24	2918	c.2757A>T	c.(2755-2757)GCA>GCT	p.A919A	PPFIA2_uc010sue.1_Intron|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA|PPFIA2_uc010suf.1_RNA|PPFIA2_uc009zsh.2_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	845										ovary(3)|lung(2)|pancreas(1)	6						CTCGGCAGGCTGCCACGTACC	0.378													4	17	---	---	---	---	PASS
UHRF1BP1L	23074	broad.mit.edu	37	12	100433461	100433461	+	Silent	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:100433461C>G	uc001tgq.2	-	20	4417	c.4188G>C	c.(4186-4188)ACG>ACC	p.T1396T	UHRF1BP1L_uc001tgp.2_Silent_p.T1046T	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	1396										ovary(2)	2						GAGTGGCTTGCGTGACACTGC	0.458													12	23	---	---	---	---	PASS
STAB2	55576	broad.mit.edu	37	12	104089339	104089339	+	Silent	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:104089339A>T	uc001tjw.2	+	32	3573	c.3387A>T	c.(3385-3387)CCA>CCT	p.P1129P		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	1129	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGCTGGTCCCACAAAGACGTC	0.468													18	43	---	---	---	---	PASS
HCFC2	29915	broad.mit.edu	37	12	104489180	104489180	+	Missense_Mutation	SNP	T	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:104489180T>G	uc001tkj.3	+	11	1608	c.1505T>G	c.(1504-1506)CTG>CGG	p.L502R	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	502					regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						AGTAGTTGCCTGGATGTAAGA	0.368													11	25	---	---	---	---	PASS
SART3	9733	broad.mit.edu	37	12	108920092	108920092	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:108920092C>T	uc001tmz.1	-	16	2389	c.2154G>A	c.(2152-2154)CCG>CCA	p.P718P	SART3_uc001tmy.1_Silent_p.P244P|SART3_uc009zux.1_Silent_p.P330P|SART3_uc010swx.1_Silent_p.P682P|SART3_uc010swy.1_Silent_p.P604P|SART3_uc010swz.1_Missense_Mutation_p.G717R	NM_014706	NP_055521	Q15020	SART3_HUMAN	squamous cell carcinoma antigen recognized by T	718	RRM 1.				RNA processing	cytoplasm|nuclear speck	nucleotide binding|protein binding|RNA binding			pancreas(1)	1						GCTTCGTGTCCGGCTCCTGCA	0.602									Porokeratosis				10	26	---	---	---	---	PASS
ACACB	32	broad.mit.edu	37	12	109665238	109665238	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:109665238G>T	uc001tob.2	+	28	4064	c.3945G>T	c.(3943-3945)CCG>CCT	p.P1315P	ACACB_uc001toc.2_Silent_p.P1315P|ACACB_uc010sxl.1_5'Flank|ACACB_uc001tod.2_5'Flank|ACACB_uc010sxm.1_5'Flank	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1315					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	GGCAGCTCCCGGACGGCACCT	0.587													3	3	---	---	---	---	PASS
MED13L	23389	broad.mit.edu	37	12	116446238	116446238	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:116446238C>A	uc001tvw.2	-	10	2035	c.1980G>T	c.(1978-1980)ATG>ATT	p.M660I		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	660					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		AGTTTACCTCCATTTTGGCAT	0.542													5	33	---	---	---	---	PASS
GLT1D1	144423	broad.mit.edu	37	12	129467608	129467608	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:129467608G>T	uc010tbh.1	+	13	1038	c.1029G>T	c.(1027-1029)AGG>AGT	p.R343S	GLT1D1_uc001uhx.1_Missense_Mutation_p.R258S|GLT1D1_uc001uhy.1_RNA	NM_144669	NP_653270	Q96MS3	GL1D1_HUMAN	glycosyltransferase 1 domain containing 1	338					biosynthetic process	extracellular region	transferase activity, transferring glycosyl groups				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;3.97e-06)|Epithelial(86;3.97e-05)|all cancers(50;0.00019)		AGCTCATCAGGAAGCTGGAAG	0.498													39	101	---	---	---	---	PASS
MMP17	4326	broad.mit.edu	37	12	132329857	132329857	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:132329857G>T	uc001ujc.1	+	8	1166	c.1067G>T	c.(1066-1068)CGG>CTG	p.R356L	MMP17_uc001ujd.1_Missense_Mutation_p.R272L	NM_016155	NP_057239	Q9ULZ9	MMP17_HUMAN	matrix metalloproteinase 17 preproprotein	356	Hemopexin-like 1.				proteolysis	anchored to membrane|integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.82e-07)|Epithelial(86;1.51e-06)|all cancers(50;2.35e-05)		TACTTCTGGCGGCTGACGCGG	0.706													7	9	---	---	---	---	PASS
ZNF268	10795	broad.mit.edu	37	12	133779072	133779072	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr12:133779072A>G	uc010tcf.1	+	6	1130	c.800A>G	c.(799-801)CAA>CGA	p.Q267R	ZNF268_uc010tbv.1_Missense_Mutation_p.Q106R|ZNF268_uc010tbw.1_Missense_Mutation_p.Q106R|ZNF268_uc010tbx.1_Missense_Mutation_p.Q127R|ZNF268_uc010tby.1_Missense_Mutation_p.Q106R|ZNF268_uc010tbz.1_Missense_Mutation_p.Q106R|ZNF268_uc010tca.1_Missense_Mutation_p.Q106R|ZNF268_uc010tcb.1_Missense_Mutation_p.Q127R|ZNF268_uc010tcc.1_Missense_Mutation_p.Q106R|ZNF268_uc010tcd.1_Missense_Mutation_p.Q106R|ZNF268_uc010tce.1_Missense_Mutation_p.Q106R|ZNF268_uc010tcg.1_Missense_Mutation_p.Q106R|ZNF268_uc010tch.1_Missense_Mutation_p.Q267R	NM_003415	NP_003406	Q14587	ZN268_HUMAN	zinc finger protein 268 isoform a	267						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_cancers(7;0.000215)|all_epithelial(31;0.096)		OV - Ovarian serous cystadenocarcinoma(86;3.58e-08)|Epithelial(86;6.6e-07)|all cancers(50;2.28e-05)		CTTATGTGCCAACAAATGTAT	0.388													7	14	---	---	---	---	PASS
TPTE2	93492	broad.mit.edu	37	13	20039417	20039417	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:20039417G>A	uc001umd.2	-	10	865	c.654C>T	c.(652-654)GAC>GAT	p.D218D	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Silent_p.D107D|TPTE2_uc001ume.2_Silent_p.D141D|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	218	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TGAGGTCTAGGTCAAATCCAT	0.313													29	114	---	---	---	---	PASS
PSPC1	55269	broad.mit.edu	37	13	20346607	20346607	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:20346607C>A	uc001uml.2	-	2	635	c.449G>T	c.(448-450)CGC>CTC	p.R150L	PSPC1_uc001umj.1_RNA|PSPC1_uc001umk.1_RNA	NM_001042414	NP_001035879	Q8WXF1	PSPC1_HUMAN	paraspeckle protein 1	150	RRM 1.|Sufficient for paraspeckles localization.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nuclear matrix|nucleolus	nucleotide binding|protein binding|RNA binding			breast(1)	1		all_cancers(29;1.25e-22)|all_lung(29;1.97e-20)|all_epithelial(30;2.29e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;4.63e-06)|Epithelial(112;2.29e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00256)|Lung(94;0.00975)|LUSC - Lung squamous cell carcinoma(192;0.0483)		TGTAGCGAAGCGAATCCGTAG	0.458													21	60	---	---	---	---	PASS
SPG20	23111	broad.mit.edu	37	13	36909559	36909559	+	Nonsense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:36909559G>A	uc001uvn.2	-	3	679	c.409C>T	c.(409-411)CAG>TAG	p.Q137*	SPG20_uc010ten.1_Nonsense_Mutation_p.Q137*|SPG20_uc001uvm.2_Nonsense_Mutation_p.Q137*|SPG20_uc001uvo.2_Nonsense_Mutation_p.Q137*|SPG20_uc001uvq.2_Nonsense_Mutation_p.Q137*|SPG20_uc001uvp.2_Nonsense_Mutation_p.Q137*	NM_001142296	NP_001135768	Q8N0X7	SPG20_HUMAN	spartin	137					cell death	cytoplasm	ubiquitin protein ligase binding				0		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;2.42e-08)|Epithelial(112;1.58e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00128)|BRCA - Breast invasive adenocarcinoma(63;0.0125)|GBM - Glioblastoma multiforme(144;0.026)		TCAGCATGCTGAGGAGCTGAA	0.458													10	22	---	---	---	---	PASS
POSTN	10631	broad.mit.edu	37	13	38145587	38145587	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:38145587G>T	uc001uwo.3	-	18	2216	c.2098C>A	c.(2098-2100)CTA>ATA	p.L700I	POSTN_uc010tet.1_Missense_Mutation_p.L201I|POSTN_uc001uwp.3_Intron|POSTN_uc001uwr.2_Missense_Mutation_p.L673I|POSTN_uc001uwq.2_Intron|POSTN_uc010teu.1_Missense_Mutation_p.L673I|POSTN_uc010tev.1_Intron|POSTN_uc010tew.1_Intron	NM_006475	NP_006466	Q15063	POSTN_HUMAN	periostin, osteoblast specific factor isoform 1	700					cell adhesion|skeletal system development	proteinaceous extracellular matrix	heparin binding			ovary(2)	2		Lung NSC(96;2.09e-05)|Prostate(109;0.0513)|Breast(139;0.0538)|Lung SC(185;0.0743)		all cancers(112;2.48e-08)|Epithelial(112;2.78e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000853)|BRCA - Breast invasive adenocarcinoma(63;0.013)|GBM - Glioblastoma multiforme(144;0.0154)		ACTTTTGTTAGTGTGGGTCCT	0.363													15	48	---	---	---	---	PASS
PCDH17	27253	broad.mit.edu	37	13	58208897	58208897	+	Silent	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:58208897T>A	uc001vhq.1	+	1	3109	c.2217T>A	c.(2215-2217)ACT>ACA	p.T739T	PCDH17_uc010aec.1_Silent_p.T739T	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	739	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		AGATCCGCACTTACAACTGCC	0.557													7	34	---	---	---	---	PASS
PCDH9	5101	broad.mit.edu	37	13	67799735	67799735	+	Silent	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:67799735A>T	uc001vik.2	-	2	3530	c.2838T>A	c.(2836-2838)CCT>CCA	p.P946P	PCDH9_uc001vil.2_Silent_p.P946P|PCDH9_uc010thl.1_Silent_p.P946P|PCDH9_uc001vin.3_Silent_p.P946P	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	946	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		GATGAAAAGCAGGCTGTGGAG	0.498													22	63	---	---	---	---	PASS
MYCBP2	23077	broad.mit.edu	37	13	77670488	77670488	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:77670488C>G	uc001vkf.2	-	58	9890	c.9799G>C	c.(9799-9801)GAA>CAA	p.E3267Q	MYCBP2_uc010aev.2_Missense_Mutation_p.E2671Q	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3267					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		AGGTATTTTTCTCTACAGCGA	0.413													22	63	---	---	---	---	PASS
POU4F1	5457	broad.mit.edu	37	13	79175661	79175661	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:79175661C>A	uc001vkv.2	-	2	1383	c.1149G>T	c.(1147-1149)GAG>GAT	p.E383D	uc001vku.1_Intron	NM_006237	NP_006228	Q01851	PO4F1_HUMAN	POU domain, class 4, transcription factor 1	383	Homeobox.				axonogenesis|regulation of transcription from RNA polymerase II promoter|synapse assembly	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.129)		CGGCGATCTTCTCGGACGAGG	0.612													13	35	---	---	---	---	PASS
GPR18	2841	broad.mit.edu	37	13	99907653	99907653	+	Silent	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:99907653C>G	uc001voe.3	-	3	975	c.474G>C	c.(472-474)CTG>CTC	p.L158L	UBAC2_uc001voa.3_Intron|UBAC2_uc010tiu.1_Intron|UBAC2_uc001vob.3_Intron|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Intron|UBAC2_uc001voc.2_Intron|UBAC2_uc010tiw.1_Intron|GPR18_uc010afv.2_Silent_p.L158L	NM_005292	NP_005283	Q14330	GPR18_HUMAN	G protein-coupled receptor 18	158	Helical; Name=4; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled				0	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Glycine(DB00145)	CTTTATAGAGCAGTAGCAGAG	0.507													14	40	---	---	---	---	PASS
FAM155A	728215	broad.mit.edu	37	13	108518418	108518418	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:108518418G>A	uc001vql.2	-	1	1043	c.527C>T	c.(526-528)GCG>GTG	p.A176V		NM_001080396	NP_001073865	B1AL88	F155A_HUMAN	family with sequence similarity 155, member A	176						integral to membrane	binding			skin(1)	1						GCCCGAGGACGCGCCCTGGGG	0.677													16	26	---	---	---	---	PASS
COL4A2	1284	broad.mit.edu	37	13	111077187	111077187	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:111077187C>T	uc001vqx.2	+	5	576	c.287C>T	c.(286-288)CCC>CTC	p.P96L		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	96					angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGGGGAGCCCCCGGAGTAACG	0.612													11	40	---	---	---	---	PASS
OR4N2	390429	broad.mit.edu	37	14	20296217	20296217	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:20296217G>T	uc010tkv.1	+	1	610	c.610G>T	c.(610-612)GGC>TGC	p.G204C		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTCAACAGTGGCCTGATGAC	0.517													19	60	---	---	---	---	PASS
OR4N2	390429	broad.mit.edu	37	14	20296218	20296218	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:20296218G>T	uc010tkv.1	+	1	611	c.611G>T	c.(610-612)GGC>GTC	p.G204V		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	204	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TTCAACAGTGGCCTGATGACA	0.517													19	59	---	---	---	---	PASS
OR4K14	122740	broad.mit.edu	37	14	20483161	20483161	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:20483161C>A	uc010tky.1	-	1	192	c.192G>T	c.(190-192)CTG>CTT	p.L64L		NM_001004712	NP_001004712	Q8NGD5	OR4KE_HUMAN	olfactory receptor, family 4, subfamily K,	64	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|large_intestine(1)	3	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CTAGGTTCCCCAGCAGGAAGT	0.483													11	20	---	---	---	---	PASS
FLJ10357	55701	broad.mit.edu	37	14	21547127	21547127	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:21547127G>T	uc001vzp.2	+	11	2360	c.2331G>T	c.(2329-2331)GTG>GTT	p.V777V	FLJ10357_uc001vzo.1_5'UTR|FLJ10357_uc010aij.2_RNA|FLJ10357_uc010tln.1_Silent_p.V63V	NM_018071	NP_060541	Q8TER5	ARH40_HUMAN	hypothetical protein LOC55701	777					regulation of Rho protein signal transduction	cytoplasm	Rho guanyl-nucleotide exchange factor activity				0	all_cancers(95;0.00185)		OV - Ovarian serous cystadenocarcinoma(11;5.79e-11)|Epithelial(56;8.35e-09)|all cancers(55;4.23e-08)	GBM - Glioblastoma multiforme(265;0.0197)		ACCTGCACGTGCAGCAGCAAG	0.632													13	10	---	---	---	---	PASS
MYH6	4624	broad.mit.edu	37	14	23873577	23873577	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:23873577G>A	uc001wjv.2	-	8	730	c.663C>T	c.(661-663)ATC>ATT	p.I221I	MYH6_uc010akp.1_Silent_p.I221I	NM_002471	NP_002462	P13533	MYH6_HUMAN	myosin heavy chain 6	221	Myosin head-like.				adult heart development|atrial cardiac muscle tissue morphogenesis|cardiac muscle fiber development|in utero embryonic development|muscle filament sliding|regulation of ATPase activity|regulation of blood pressure|regulation of heart rate|regulation of the force of heart contraction|sarcomere organization|striated muscle contraction|ventricular cardiac muscle tissue morphogenesis|visceral muscle development	cytosol|focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|protein kinase binding|structural constituent of muscle			pancreas(2)|ovary(1)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00764)|READ - Rectum adenocarcinoma(4;0.0289)|Colorectal(4;0.0441)		TGGCCTGGATGATCTGGTCCT	0.612													30	51	---	---	---	---	PASS
FSCB	84075	broad.mit.edu	37	14	44974630	44974630	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:44974630C>A	uc001wvn.2	-	1	1870	c.1561G>T	c.(1561-1563)GCC>TCC	p.A521S		NM_032135	NP_115511	Q5H9T9	FSCB_HUMAN	fibrous sheath CABYR binding protein	521	Ala-rich.					cilium				lung(3)|breast(3)|ovary(2)|central_nervous_system(1)	9				GBM - Glioblastoma multiforme(112;0.128)		TCAGCAGAGGCCTCTTCTGCA	0.502													5	17	---	---	---	---	PASS
FAM179B	23116	broad.mit.edu	37	14	45468664	45468664	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:45468664C>G	uc001wvv.2	+	3	2511	c.2302C>G	c.(2302-2304)CAA>GAA	p.Q768E	FAM179B_uc001wvw.2_Missense_Mutation_p.Q768E|FAM179B_uc010anc.2_RNA|FAM179B_uc001wvu.2_Missense_Mutation_p.Q768E	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	768							binding			skin(2)|upper_aerodigestive_tract(1)	3						TTCTGACTTACAATTCCTAGG	0.368													16	26	---	---	---	---	PASS
RTN1	6252	broad.mit.edu	37	14	60072126	60072126	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:60072126C>A	uc001xen.1	-	5	2281	c.2072G>T	c.(2071-2073)AGG>ATG	p.R691M	RTN1_uc001xem.1_Missense_Mutation_p.R271M|RTN1_uc001xek.1_Missense_Mutation_p.R123M|RTN1_uc001xel.1_RNA|RTN1_uc010apl.1_Missense_Mutation_p.R108M	NM_021136	NP_066959	Q16799	RTN1_HUMAN	reticulon 1 isoform A	691	Reticulon.				neuron differentiation	integral to endoplasmic reticulum membrane	signal transducer activity			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0968)		GAAGAGCCTCCTCAGTTCCTT	0.463													15	25	---	---	---	---	PASS
C14orf135	64430	broad.mit.edu	37	14	60591742	60591742	+	Silent	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:60591742A>G	uc001xer.3	+	8	2673	c.2151A>G	c.(2149-2151)GAA>GAG	p.E717E	C14orf135_uc001xeq.2_Silent_p.E717E|C14orf135_uc010apm.2_RNA	NM_022495	NP_071940	Q63HM2	CN135_HUMAN	hepatitis C virus F protein-binding protein 2	951						integral to membrane				ovary(2)	2		Myeloproliferative disorder(585;0.163)		OV - Ovarian serous cystadenocarcinoma(108;0.127)		ATCATTCAGAAGAGAAGGCCT	0.358													22	38	---	---	---	---	PASS
C14orf178	283579	broad.mit.edu	37	14	78234794	78234794	+	Splice_Site	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:78234794G>T	uc001xug.1	+	3	533	c.75_splice	c.e3-1	p.W25_splice	C14orf178_uc001xuh.1_Intron	NM_174943	NP_777603	Q8N769	CN178_HUMAN	hypothetical protein LOC283579											ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0273)		attttttaCAGGCATGATCAA	0.303													5	55	---	---	---	---	PASS
KIAA1409	57578	broad.mit.edu	37	14	94079210	94079210	+	Silent	SNP	C	T	T	rs149617798	by1000genomes	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:94079210C>T	uc001ybv.1	+	25	3440	c.3357C>T	c.(3355-3357)CAC>CAT	p.H1119H	KIAA1409_uc001ybs.1_Silent_p.H1097H	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1274						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GGATCGACCACCAGACAGTTC	0.522													25	73	---	---	---	---	PASS
ATG2B	55102	broad.mit.edu	37	14	96773242	96773242	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:96773242C>T	uc001yfi.2	-	30	4680	c.4315G>A	c.(4315-4317)GAA>AAA	p.E1439K		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	1439										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		TGAGATTTTTCATCCAAAACA	0.343													16	16	---	---	---	---	PASS
AHNAK2	113146	broad.mit.edu	37	14	105408092	105408092	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:105408092C>T	uc010axc.1	-	7	13816	c.13696G>A	c.(13696-13698)GTG>ATG	p.V4566M	AHNAK2_uc001ypx.2_Missense_Mutation_p.V4466M	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4566						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TTGACGTCCACCTGGGGGCCC	0.627													45	145	---	---	---	---	PASS
AHNAK2	113146	broad.mit.edu	37	14	105408109	105408109	+	Missense_Mutation	SNP	T	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:105408109T>G	uc010axc.1	-	7	13799	c.13679A>C	c.(13678-13680)GAC>GCC	p.D4560A	AHNAK2_uc001ypx.2_Missense_Mutation_p.D4460A	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4560						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GCCCTTGAGGTCCACTTTGGG	0.617													23	157	---	---	---	---	PASS
AHNAK2	113146	broad.mit.edu	37	14	105415986	105415986	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:105415986G>A	uc010axc.1	-	7	5922	c.5802C>T	c.(5800-5802)GAC>GAT	p.D1934D	AHNAK2_uc001ypx.2_Silent_p.D1834D	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1934						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			GGCCTTTCAGGTCCAGCTTGG	0.597													136	147	---	---	---	---	PASS
AHNAK2	113146	broad.mit.edu	37	14	105416541	105416541	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:105416541C>G	uc010axc.1	-	7	5367	c.5247G>C	c.(5245-5247)TTG>TTC	p.L1749F	AHNAK2_uc001ypx.2_Missense_Mutation_p.L1649F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1749						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGGGCATCTTCAAACTGGGCA	0.652													10	233	---	---	---	---	PASS
HERC2	8924	broad.mit.edu	37	15	28478864	28478864	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:28478864C>A	uc001zbj.2	-	28	4403	c.4297G>T	c.(4297-4299)GTG>TTG	p.V1433L		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	1433					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		ACCTCTTCCACGGGATGCTCG	0.458													15	61	---	---	---	---	PASS
GPR176	11245	broad.mit.edu	37	15	40094083	40094083	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:40094083G>A	uc001zkj.1	-	3	1664	c.798C>T	c.(796-798)GCC>GCT	p.A266A	GPR176_uc010uck.1_Silent_p.A206A	NM_007223	NP_009154	Q14439	GP176_HUMAN	G protein-coupled receptor 176	266	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		all_cancers(109;4.05e-15)|all_epithelial(112;2.96e-13)|Lung NSC(122;8.53e-11)|all_lung(180;2.71e-09)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;4.4e-06)|BRCA - Breast invasive adenocarcinoma(123;0.123)		AGAGCAGGGTGGCGTGCAGCT	0.582											OREG0023053	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	43	---	---	---	---	PASS
MAPKBP1	23005	broad.mit.edu	37	15	42106796	42106796	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:42106796C>T	uc001zok.3	+	11	1333	c.1047C>T	c.(1045-1047)GCC>GCT	p.A349A	MAPKBP1_uc001zoj.3_Silent_p.A343A|MAPKBP1_uc010bcj.2_Intron|MAPKBP1_uc010bci.2_Silent_p.A343A|MAPKBP1_uc010udb.1_Silent_p.A231A|MAPKBP1_uc010bck.2_5'UTR|MAPKBP1_uc010bcl.2_Intron	NM_001128608	NP_001122080	O60336	MABP1_HUMAN	mitogen-activated protein kinase binding protein	349	WD 5.									central_nervous_system(5)|breast(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	10		all_cancers(109;7.71e-14)|all_epithelial(112;5.15e-12)|Lung NSC(122;3.74e-08)|all_lung(180;1.81e-07)|Melanoma(134;0.0262)		OV - Ovarian serous cystadenocarcinoma(18;3.95e-17)|GBM - Glioblastoma multiforme(94;5.71e-07)|Lung(196;0.0436)|BRCA - Breast invasive adenocarcinoma(123;0.203)|LUSC - Lung squamous cell carcinoma(244;0.225)		ACACCATTGCCTTGACCTTTG	0.498													31	56	---	---	---	---	PASS
ZFP106	64397	broad.mit.edu	37	15	42742430	42742430	+	Silent	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:42742430T>C	uc001zpw.2	-	2	2306	c.1971A>G	c.(1969-1971)ACA>ACG	p.T657T	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Silent_p.T440T|ZFP106_uc001zpy.1_Silent_p.T680T	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	657						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TGGCTGCAGATGTCATTTGTA	0.423													32	74	---	---	---	---	PASS
SNAP23	8773	broad.mit.edu	37	15	42805639	42805639	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:42805639C>A	uc001zpz.1	+	4	233	c.142C>A	c.(142-144)CAA>AAA	p.Q48K	SNAP23_uc001zqa.1_Missense_Mutation_p.Q48K	NM_003825	NP_003816	O00161	SNP23_HUMAN	synaptosomal-associated protein 23 isoform	48	t-SNARE coiled-coil homology 1.				cellular membrane fusion|post-Golgi vesicle-mediated transport|protein transport|vesicle targeting	azurophil granule|cell junction|Golgi apparatus|nucleus|plasma membrane enriched fraction|specific granule|synapse|synaptosome	protein binding				0		all_cancers(109;7.14e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;1.18e-08)|all_lung(180;4.2e-08)|Melanoma(134;0.0179)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;2.62e-06)		GCTGGATGAACAAAAGGGTAA	0.378													15	36	---	---	---	---	PASS
SLC24A5	283652	broad.mit.edu	37	15	48429046	48429046	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:48429046G>A	uc001zwe.2	+	6	830	c.757G>A	c.(757-759)GAA>AAA	p.E253K	SLC24A5_uc010bel.2_Missense_Mutation_p.E193K|uc001zwf.1_5'Flank	NM_205850	NP_995322	Q71RS6	NCKX5_HUMAN	solute carrier family 24, member 5 precursor	253	Cytoplasmic (Potential).				response to stimulus	integral to membrane|melanosome|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity				0		all_lung(180;0.00217)		all cancers(107;3.29e-10)|GBM - Glioblastoma multiforme(94;7.32e-07)		CTGGGAAGATGAAGGTCAACC	0.413													12	26	---	---	---	---	PASS
C15orf33	196951	broad.mit.edu	37	15	49833966	49833966	+	Missense_Mutation	SNP	G	A	A	rs148925050		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:49833966G>A	uc001zxl.2	-	10	1079	c.785C>T	c.(784-786)ACG>ATG	p.T262M	C15orf33_uc001zxm.2_Missense_Mutation_p.T228M	NM_152647	NP_689860	Q96M60	CO033_HUMAN	hypothetical protein LOC196951	262										ovary(1)	1		all_lung(180;0.00187)		all cancers(107;3.45e-08)|GBM - Glioblastoma multiforme(94;0.000124)		TTCATGGAACGTTGCATATAT	0.274													21	60	---	---	---	---	PASS
THSD4	79875	broad.mit.edu	37	15	72039276	72039276	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:72039276G>A	uc002atb.1	+	12	2215	c.2136G>A	c.(2134-2136)CTG>CTA	p.L712L	THSD4_uc002ate.2_Silent_p.L352L	NM_024817	NP_079093	Q6ZMP0	THSD4_HUMAN	thrombospondin, type I, domain containing 4	712	TSP type-1 2.					proteinaceous extracellular matrix	metalloendopeptidase activity			ovary(2)	2						ACCGCAGCCTGACGGTGCAGC	0.642													7	12	---	---	---	---	PASS
CCDC33	80125	broad.mit.edu	37	15	74554868	74554868	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:74554868G>A	uc002axo.2	+	3	667	c.273G>A	c.(271-273)GGG>GGA	p.G91G		NM_025055	NP_079331	Q8N5R6	CCD33_HUMAN	coiled-coil domain containing 33 isoform 1	294	C2.						protein binding			ovary(3)|skin(2)	5						CTATCTGGGGGGACACGGTGA	0.582													11	13	---	---	---	---	PASS
ARNT2	9915	broad.mit.edu	37	15	80806740	80806740	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:80806740C>A	uc002bfr.2	+	8	1037	c.871C>A	c.(871-873)CCA>ACA	p.P291T	ARNT2_uc010unm.1_Missense_Mutation_p.P280T|ARNT2_uc002bfs.2_Missense_Mutation_p.P280T	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	291					central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			GGCCTGGCCACCAGCAGGTAA	0.478													86	96	---	---	---	---	PASS
AP3B2	8120	broad.mit.edu	37	15	83333598	83333598	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:83333598G>A	uc010uoh.1	-	17	2246	c.2069C>T	c.(2068-2070)TCC>TTC	p.S690F	AP3B2_uc010uoi.1_Missense_Mutation_p.S709F|AP3B2_uc010uoj.1_Missense_Mutation_p.S658F|AP3B2_uc010bmp.2_5'Flank|AP3B2_uc010uog.1_Missense_Mutation_p.S326F|AP3B2_uc002biy.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	690	Glu/Ser-rich.				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			ACTGTCTGCGGACTCCGTGGG	0.532													7	6	---	---	---	---	PASS
BNC1	646	broad.mit.edu	37	15	83926867	83926867	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:83926867T>C	uc002bjt.1	-	5	2400	c.2312A>G	c.(2311-2313)AAC>AGC	p.N771S	BNC1_uc010uos.1_Missense_Mutation_p.N759S	NM_001717	NP_001708	Q01954	BNC1_HUMAN	basonuclin 1	771	C2H2-type 4.				epidermis development|positive regulation of cell proliferation	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						GAGGTTTAGGTTTGAGCTGTG	0.443													12	62	---	---	---	---	PASS
WDR93	56964	broad.mit.edu	37	15	90255313	90255313	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:90255313C>A	uc002boj.2	+	5	719	c.618C>A	c.(616-618)GAC>GAA	p.D206E	WDR93_uc010bnr.2_Missense_Mutation_p.D206E	NM_020212	NP_064597	Q6P2C0	WDR93_HUMAN	WD repeat domain 93	206					electron transport chain	mitochondrial inner membrane	oxidoreductase activity, acting on NADH or NADPH			ovary(2)	2	Lung NSC(78;0.0237)|all_lung(78;0.0478)		KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|BRCA - Breast invasive adenocarcinoma(143;0.128)			AAGGAGGGGACTTTGCAGCCT	0.418													13	36	---	---	---	---	PASS
SNRPA1	6627	broad.mit.edu	37	15	101832213	101832213	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:101832213G>A	uc002bww.2	-	3	340	c.263C>T	c.(262-264)CCC>CTC	p.P88L	SNRPA1_uc002bwx.2_Intron|SNRPA1_uc010bpc.2_Intron	NM_003090	NP_003081	P09661	RU2A_HUMAN	small nuclear ribonucleoprotein polypeptide A'	88						catalytic step 2 spliceosome|nucleoplasm|U2 snRNP	protein binding|RNA binding			kidney(1)	1	Lung NSC(78;0.00156)|all_lung(78;0.00195)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00113)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			TGTCAGACAGGGCAGAGCCTG	0.383													54	190	---	---	---	---	PASS
TARSL2	123283	broad.mit.edu	37	15	102261405	102261405	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:102261405C>A	uc002bxm.2	-	3	545	c.490G>T	c.(490-492)GTA>TTA	p.V164L	TARSL2_uc010usi.1_RNA	NM_152334	NP_689547	A2RTX5	SYTC2_HUMAN	threonyl-tRNA synthetase-like 2	164					threonyl-tRNA aminoacylation	cytoplasm	ATP binding|threonine-tRNA ligase activity			ovary(2)	2	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000268)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			GCCACTCTTACTGTGATGATG	0.413													71	85	---	---	---	---	PASS
OR4F6	390648	broad.mit.edu	37	15	102346577	102346577	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr15:102346577A>G	uc010utr.1	+	1	655	c.655A>G	c.(655-657)ATC>GTC	p.I219V		NM_001005326	NP_001005326	Q8NGB9	OR4F6_HUMAN	olfactory receptor, family 4, subfamily F,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Lung NSC(78;0.000991)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00039)|Lung(145;0.17)|LUSC - Lung squamous cell carcinoma(107;0.187)			AATCTCTTACATCTTTATTTT	0.378													35	61	---	---	---	---	PASS
NARFL	64428	broad.mit.edu	37	16	789680	789680	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr16:789680C>T	uc002cjr.2	-	2	137	c.125G>A	c.(124-126)CGC>CAC	p.R42H	NARFL_uc002cjp.2_5'Flank|NARFL_uc002cjq.2_5'UTR|NARFL_uc002cjs.2_5'UTR|NARFL_uc010brc.1_Missense_Mutation_p.R42H|NARFL_uc010uur.1_Missense_Mutation_p.R42H	NM_022493	NP_071938	Q9H6Q4	NARFL_HUMAN	nuclear prelamin A recognition factor-like	42					iron-sulfur cluster assembly|oxygen homeostasis|regulation of transcription, DNA-dependent|response to hypoxia		4 iron, 4 sulfur cluster binding|metal ion binding				0		Hepatocellular(780;0.0218)				ATCTTCAATGCGAATCTTGGC	0.537													23	55	---	---	---	---	PASS
SOX8	30812	broad.mit.edu	37	16	1034811	1034811	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr16:1034811C>A	uc002ckn.2	+	3	881	c.766C>A	c.(766-768)CGC>AGC	p.R256S		NM_014587	NP_055402	P57073	SOX8_HUMAN	SRY (sex determining region Y)-box 8	256					adipose tissue development|enteric nervous system development|fat cell differentiation|in utero embryonic development|metanephric nephron tubule formation|morphogenesis of a branching epithelium|negative regulation of apoptosis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|neural crest cell migration|oligodendrocyte differentiation|osteoblast differentiation|peripheral nervous system development|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of gliogenesis|positive regulation of osteoblast proliferation|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone levels|renal vesicle induction|retinal rod cell differentiation|Sertoli cell development|signal transduction|spermatogenesis|ureter morphogenesis	cytoplasm|nucleus				central_nervous_system(1)|skin(1)	2		Hepatocellular(780;0.00308)				GGACAGCGGGCGCCAGAACAT	0.682													6	15	---	---	---	---	PASS
GP2	2813	broad.mit.edu	37	16	20331786	20331786	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr16:20331786C>T	uc002dgv.2	-	6	748	c.665G>A	c.(664-666)AGT>AAT	p.S222N	GP2_uc002dgw.2_Missense_Mutation_p.S219N|GP2_uc002dgx.2_Missense_Mutation_p.S75N|GP2_uc002dgy.2_Missense_Mutation_p.S72N	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	222	EGF-like.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						AGGCTGCAAACTGTGGACATC	0.522													6	22	---	---	---	---	PASS
IGSF6	10261	broad.mit.edu	37	16	21655691	21655691	+	Missense_Mutation	SNP	G	C	C	rs75597368	byFrequency	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr16:21655691G>C	uc002djg.1	-	3	507	c.454C>G	c.(454-456)CGG>GGG	p.R152G	uc002diq.3_Intron|METTL9_uc002dje.2_Intron|METTL9_uc002djf.2_Intron	NM_005849	NP_005840	O95976	IGSF6_HUMAN	immunoglobulin superfamily, member 6 precursor	152	Extracellular (Potential).				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0				GBM - Glioblastoma multiforme(48;0.066)		AGGAAGCTCCGCAGTTCCTTG	0.418													12	44	---	---	---	---	PASS
RNF40	9810	broad.mit.edu	37	16	30773976	30773976	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr16:30773976G>A	uc002dzq.2	+	2	233	c.110G>A	c.(109-111)CGT>CAT	p.R37H	C16orf93_uc002dzm.2_5'Flank|C16orf93_uc002dzn.2_5'Flank|C16orf93_uc002dzo.2_5'Flank|C16orf93_uc002dzp.2_5'Flank|RNF40_uc010caa.2_Missense_Mutation_p.R37H|RNF40_uc010cab.2_Missense_Mutation_p.R37H|RNF40_uc010vfa.1_Intron|RNF40_uc002dzr.2_Missense_Mutation_p.R37H|RNF40_uc010vfb.1_Missense_Mutation_p.R37H	NM_014771	NP_055586	O75150	BRE1B_HUMAN	ring finger protein 40	37					histone H2B ubiquitination|histone monoubiquitination|ubiquitin-dependent protein catabolic process	nucleus|synaptosome|ubiquitin ligase complex	protein homodimerization activity|ubiquitin protein ligase binding|zinc ion binding			central_nervous_system(1)	1			Colorectal(24;0.198)			GAGCCCATTCGTCTTGGAGGC	0.597													8	38	---	---	---	---	PASS
ITGAM	3684	broad.mit.edu	37	16	31309153	31309153	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr16:31309153G>T	uc002ebq.2	+	14	1683	c.1585G>T	c.(1585-1587)GAC>TAC	p.D529Y	ITGAM_uc002ebr.2_Missense_Mutation_p.D530Y|ITGAM_uc010cam.1_Intron|ITGAM_uc010can.2_Intron	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	529	FG-GAP 6.|Extracellular (Potential).|Potential.				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						AGTGCTGGGGGACGTAAATGG	0.612													26	57	---	---	---	---	PASS
ABCC12	94160	broad.mit.edu	37	16	48158195	48158195	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr16:48158195C>G	uc002efc.1	-	10	1862	c.1516G>C	c.(1516-1518)GGG>CGG	p.G506R	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.G506R	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	506	ABC transporter 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				AAGATCTTCCCCTGCCAGAGA	0.537													20	46	---	---	---	---	PASS
ATP2C2	9914	broad.mit.edu	37	16	84473128	84473128	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr16:84473128G>A	uc002fhx.2	+	13	1296	c.1207G>A	c.(1207-1209)GAG>AAG	p.E403K	ATP2C2_uc010chj.2_Missense_Mutation_p.E403K|ATP2C2_uc002fhy.2_Missense_Mutation_p.E420K|ATP2C2_uc002fhz.2_Missense_Mutation_p.E252K	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	403	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						GCTTCGTGCCGAGGTGAGTGC	0.493													36	72	---	---	---	---	PASS
DNAH9	1770	broad.mit.edu	37	17	11520814	11520814	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:11520814G>T	uc002gne.2	+	5	1059	c.991G>T	c.(991-993)GTG>TTG	p.V331L		NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	331	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ATTTCCGGAGGTGAAGCCCCA	0.602													14	19	---	---	---	---	PASS
TAOK1	57551	broad.mit.edu	37	17	27818857	27818857	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:27818857C>G	uc002hdz.1	+	10	999	c.805C>G	c.(805-807)CGA>GGA	p.R269G	TAOK1_uc010wbe.1_Missense_Mutation_p.R269G|TAOK1_uc010wbf.1_Missense_Mutation_p.R269G|TAOK1_uc002heb.1_Missense_Mutation_p.R95G	NM_020791	NP_065842	Q7L7X3	TAOK1_HUMAN	TAO kinase 1	269	Protein kinase.				mitotic prometaphase	cytosol|intracellular membrane-bounded organelle	ATP binding|protein serine/threonine kinase activity			upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)|skin(1)	4			Colorectal(6;0.198)			CCCTCAAGATCGACCTACATC	0.254													24	39	---	---	---	---	PASS
COPZ2	51226	broad.mit.edu	37	17	46109586	46109586	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:46109586T>C	uc002imy.2	-	10	443	c.430A>G	c.(430-432)AAG>GAG	p.K144E		NM_016429	NP_057513	Q9P299	COPZ2_HUMAN	coatomer protein complex, subunit zeta 2	144					intracellular protein transport|vesicle-mediated transport	cis-Golgi network|COPI vesicle coat					0						AACCAGCGCTTCTCCACGTTC	0.597													7	25	---	---	---	---	PASS
EPX	8288	broad.mit.edu	37	17	56277147	56277147	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:56277147T>C	uc002ivq.2	+	9	1615	c.1529T>C	c.(1528-1530)GTG>GCG	p.V510A		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	510					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						TGGCGGATCGTGTATGAAGGT	0.612													33	15	---	---	---	---	PASS
BZRAP1	9256	broad.mit.edu	37	17	56389036	56389036	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:56389036G>A	uc002ivx.3	-	18	3848	c.2977C>T	c.(2977-2979)CCT>TCT	p.P993S	BZRAP1_uc010dcs.2_Missense_Mutation_p.P933S|BZRAP1_uc010wnt.1_Missense_Mutation_p.P993S	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	993	Fibronectin type-III 3.					mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AAGATCCCAGGGGAGGGCCCA	0.622													13	32	---	---	---	---	PASS
CLTC	1213	broad.mit.edu	37	17	57754494	57754494	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:57754494C>T	uc002ixq.1	+	17	3184	c.2741C>T	c.(2740-2742)CCA>CTA	p.P914L	CLTC_uc002ixp.2_Missense_Mutation_p.P914L|CLTC_uc002ixr.1_Missense_Mutation_p.P918L	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	914	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					AAGAGAGATCCACATCTGGCC	0.393			T	ALK|TFE3	ALCL|renal 								31	15	---	---	---	---	PASS
TBX2	6909	broad.mit.edu	37	17	59480532	59480532	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:59480532C>A	uc010wox.1	+	3	1055	c.774C>A	c.(772-774)ACC>ACA	p.T258T	TBX2_uc002ize.2_Silent_p.T248T|TBX2_uc002izg.2_Silent_p.T104T	NM_005994	NP_005985	Q13207	TBX2_HUMAN	T-box 2	258	T-box.				cell aging|positive regulation of cell proliferation		sequence-specific DNA binding				0						TCCCGGAGACCGACTTCATCG	0.622													40	21	---	---	---	---	PASS
FTSJ3	117246	broad.mit.edu	37	17	61897535	61897535	+	Splice_Site	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:61897535T>C	uc002jbz.2	-	19	2335	c.2257_splice	c.e19-1	p.M753_splice	FTSJ3_uc002jca.2_Splice_Site_p.M753_splice	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3						RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						CTTCAGCATCTGCAAAGGAAC	0.557													29	32	---	---	---	---	PASS
TEX2	55852	broad.mit.edu	37	17	62290610	62290610	+	Nonsense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:62290610G>C	uc002jec.2	-	2	1141	c.968C>G	c.(967-969)TCA>TGA	p.S323*	TEX2_uc002jed.2_Nonsense_Mutation_p.S323*|TEX2_uc002jee.2_Nonsense_Mutation_p.S323*	NM_018469	NP_060939	Q8IWB9	TEX2_HUMAN	testis expressed sequence 2	323					signal transduction|sphingolipid metabolic process	integral to membrane				ovary(1)	1			BRCA - Breast invasive adenocarcinoma(8;1.33e-10)	READ - Rectum adenocarcinoma(1115;0.0689)		TGAAGCACTTGAAGATAAGGC	0.453													11	46	---	---	---	---	PASS
KIF19	124602	broad.mit.edu	37	17	72349680	72349680	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:72349680C>A	uc002jkm.3	+	17	2406	c.2268C>A	c.(2266-2268)GAC>GAA	p.D756E		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	756					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CTTCCCCTGACAGCAGTGAGA	0.597													20	13	---	---	---	---	PASS
KIF19	124602	broad.mit.edu	37	17	72349681	72349681	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:72349681A>G	uc002jkm.3	+	17	2407	c.2269A>G	c.(2269-2271)AGC>GGC	p.S757G		NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19	757					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						TTCCCCTGACAGCAGTGAGAA	0.597													21	12	---	---	---	---	PASS
CCDC40	55036	broad.mit.edu	37	17	78058646	78058646	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:78058646G>A	uc010dht.2	+	13	2121	c.2094G>A	c.(2092-2094)CTG>CTA	p.L698L	CCDC40_uc002jxm.3_Silent_p.L481L|CCDC40_uc002jxn.3_Silent_p.L94L	NM_017950	NP_060420	Q4G0X9	CCD40_HUMAN	coiled-coil domain containing 40	698	Potential.				axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium|cytoplasm				ovary(3)	3	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.0292)|BRCA - Breast invasive adenocarcinoma(99;0.149)			TGGTGGAGCTGGACCAGGACG	0.562													10	35	---	---	---	---	PASS
SIRT7	51547	broad.mit.edu	37	17	79872183	79872183	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr17:79872183C>A	uc002kcj.1	-	7	836	c.803G>T	c.(802-804)GGG>GTG	p.G268V	PCYT2_uc002kcf.1_5'Flank|PCYT2_uc002kcg.1_5'Flank|PCYT2_uc002kch.1_5'Flank|PCYT2_uc002kci.1_5'Flank|PCYT2_uc010dii.1_5'Flank|PCYT2_uc010wvc.1_5'Flank|SIRT7_uc002kck.1_Missense_Mutation_p.G119V|SIRT7_uc002kcl.1_Missense_Mutation_p.G186V	NM_016538	NP_057622	Q9NRC8	SIRT7_HUMAN	sirtuin 7	268	Deacetylase sirtuin-type.				chromatin silencing|positive regulation of transcription on exit from mitosis|protein deacetylation|rRNA transcription	cytoplasm|nucleolus organizer region	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ binding|protein binding|zinc ion binding				0	all_neural(118;0.0878)|Ovarian(332;0.12)		BRCA - Breast invasive adenocarcinoma(99;0.0165)|OV - Ovarian serous cystadenocarcinoma(97;0.0382)			CAGGCTGGACCCTAGACACAG	0.617													23	25	---	---	---	---	PASS
CTAGE1	64693	broad.mit.edu	37	18	19996144	19996144	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr18:19996144C>A	uc002ktv.1	-	1	1735	c.1631G>T	c.(1630-1632)GGA>GTA	p.G544V		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	544						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GCTTGATTCTCCTCTTTCTTT	0.547													16	59	---	---	---	---	PASS
DSC1	1823	broad.mit.edu	37	18	28719713	28719713	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr18:28719713G>T	uc002kwn.2	-	11	1923	c.1661C>A	c.(1660-1662)GCA>GAA	p.A554E	DSC1_uc002kwm.2_Missense_Mutation_p.A554E	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	554	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			GCACTCACCTGCATCCACTGC	0.313													5	14	---	---	---	---	PASS
MEP1B	4225	broad.mit.edu	37	18	29793520	29793520	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr18:29793520C>A	uc002kxj.3	+	11	1624	c.1577C>A	c.(1576-1578)ACC>AAC	p.T526N		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	526	Extracellular (Potential).|MATH.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						TTTATGACCACCGGTTCGTAA	0.418													15	60	---	---	---	---	PASS
FAM59A	64762	broad.mit.edu	37	18	29867260	29867260	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr18:29867260G>T	uc002kxl.2	-	4	1356	c.1300C>A	c.(1300-1302)CTT>ATT	p.L434I	FAM59A_uc002kxk.1_Missense_Mutation_p.L434I	NM_022751	NP_073588	Q9H706	FA59A_HUMAN	family with sequence similarity 59, member A	434										ovary(1)|skin(1)	2						TCTGGGAAAAGGTAGTCGCTC	0.562													31	75	---	---	---	---	PASS
C18orf34	374864	broad.mit.edu	37	18	30873191	30873191	+	Nonsense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr18:30873191C>A	uc002kxn.2	-	11	1250	c.1108G>T	c.(1108-1110)GAG>TAG	p.E370*	C18orf34_uc010xbr.1_Nonsense_Mutation_p.E370*|C18orf34_uc010dmf.1_Intron|C18orf34_uc002kxo.2_Nonsense_Mutation_p.E370*|C18orf34_uc002kxp.2_Nonsense_Mutation_p.E370*	NM_001105528	NP_001098998	Q5BJE1	CR034_HUMAN	hypothetical protein LOC374864 isoform 1	370	Potential.									ovary(1)	1						GTCACTTCCTCTTCCTTCTCC	0.289													5	28	---	---	---	---	PASS
ELP2	55250	broad.mit.edu	37	18	33710009	33710009	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr18:33710009G>T	uc002kzk.1	+	1	123	c.113G>T	c.(112-114)TGC>TTC	p.C38F	SLC39A6_uc010dmy.2_5'Flank|SLC39A6_uc002kzj.2_5'Flank|ELP2_uc010xcg.1_Missense_Mutation_p.C38F|ELP2_uc002kzl.1_RNA|ELP2_uc002kzm.1_Missense_Mutation_p.C38F|ELP2_uc010xch.1_Missense_Mutation_p.C38F|ELP2_uc002kzn.1_Missense_Mutation_p.C38F|ELP2_uc002kzo.1_Missense_Mutation_p.C38F	NM_018255	NP_060725	Q6IA86	ELP2_HUMAN	elongator protein 2	38	WD 1.				regulation of transcription from RNA polymerase II promoter	Golgi apparatus|transcription elongation factor complex				breast(2)|ovary(1)|skin(1)	4						GGCACGTCCTGCTCCGTGGTG	0.622													11	29	---	---	---	---	PASS
DCC	1630	broad.mit.edu	37	18	50592439	50592439	+	Silent	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr18:50592439T>A	uc002lfe.1	+	7	1751	c.1164T>A	c.(1162-1164)CTT>CTA	p.L388L	DCC_uc010xdr.1_Silent_p.L236L|DCC_uc010dpf.1_Silent_p.L43L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	388	Extracellular (Potential).|Ig-like C2-type 4.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TACGGATACTTGGGGTGGTGA	0.433													26	97	---	---	---	---	PASS
DSEL	92126	broad.mit.edu	37	18	65181699	65181699	+	Missense_Mutation	SNP	A	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr18:65181699A>T	uc002lke.1	-	2	1401	c.177T>A	c.(175-177)GAT>GAA	p.D59E		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	49						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				TGGGTCTGAAATCTTGCACTT	0.378													14	47	---	---	---	---	PASS
LPHN1	22859	broad.mit.edu	37	19	14273977	14273977	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:14273977C>A	uc010xnn.1	-	6	947	c.651G>T	c.(649-651)GTG>GTT	p.V217V	LPHN1_uc010xno.1_Silent_p.V212V|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	217	Olfactomedin-like.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						CATCGTAGACCACAAAGCCTG	0.602													4	21	---	---	---	---	PASS
ZNF43	7594	broad.mit.edu	37	19	21991722	21991722	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:21991722T>C	uc002nqj.2	-	4	1247	c.1117A>G	c.(1117-1119)ACA>GCA	p.T373A	ZNF43_uc010ecv.2_Missense_Mutation_p.T367A|ZNF43_uc002nql.2_Missense_Mutation_p.T367A|ZNF43_uc002nqm.2_Missense_Mutation_p.T367A|ZNF43_uc002nqk.2_Missense_Mutation_p.T303A	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	373	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		CCACATTCTGTACATTTATAG	0.373													17	32	---	---	---	---	PASS
CCNE1	898	broad.mit.edu	37	19	30313189	30313189	+	Missense_Mutation	SNP	C	A	A	rs139792204	byFrequency	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:30313189C>A	uc002nsn.2	+	10	1066	c.883C>A	c.(883-885)CCT>ACT	p.P295T	CCNE1_uc002nso.2_Missense_Mutation_p.P280T|CCNE1_uc002nsp.2_Missense_Mutation_p.P42T	NM_001238	NP_001229	P24864	CCNE1_HUMAN	cyclin E1 isoform 1	295					androgen receptor signaling pathway|cell division|positive regulation of transcription, DNA-dependent|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol|nucleoplasm	androgen receptor binding|protein kinase binding|transcription coactivator activity			lung(2)	2	all_cancers(1;2.19e-31)|all_epithelial(1;1.49e-30)|all_lung(1;1.37e-11)|Lung NSC(1;2.35e-11)|Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|Epithelial(1;6.85e-98)|all cancers(1;1.38e-94)|OV - Ovarian serous cystadenocarcinoma(1;1.38e-90)|STAD - Stomach adenocarcinoma(5;5.8e-07)|GBM - Glioblastoma multiforme(4;0.0394)|Lung(7;0.092)|LUAD - Lung adenocarcinoma(5;0.115)|BRCA - Breast invasive adenocarcinoma(6;0.183)|COAD - Colon adenocarcinoma(1;0.188)|Colorectal(1;0.202)			CCTTGAATTTCCTTATGGTAT	0.453													28	66	---	---	---	---	PASS
GAPDHS	26330	broad.mit.edu	37	19	36034322	36034322	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:36034322C>A	uc002oaf.1	+	8	938	c.822C>A	c.(820-822)GCC>GCA	p.A274A	uc010eec.1_RNA|uc002oag.2_Intron|TMEM147_uc002oai.1_5'Flank|TMEM147_uc002oaj.1_5'Flank|TMEM147_uc002oak.1_5'Flank	NM_014364	NP_055179	O14556	G3PT_HUMAN	glyceraldehyde-3-phosphate dehydrogenase,	274					gluconeogenesis|glycolysis|positive regulation of glycolysis|sperm motility	cytosol	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity|NAD binding|protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		NADH(DB00157)	GGCGGGGTGCCCACCAGAACA	0.587													15	40	---	---	---	---	PASS
ZNF527	84503	broad.mit.edu	37	19	37880462	37880462	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:37880462G>A	uc010efk.1	+	5	1622	c.1511G>A	c.(1510-1512)GGG>GAG	p.G504E	ZNF527_uc002ogf.3_Missense_Mutation_p.G472E|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	504	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			AGTAAATGTGGGAAAGCCTTC	0.393													21	65	---	---	---	---	PASS
ZNF781	163115	broad.mit.edu	37	19	38160382	38160382	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:38160382A>G	uc002ogy.2	-	4	1410	c.668T>C	c.(667-669)ATA>ACA	p.I223T	ZNF781_uc002ogz.2_Missense_Mutation_p.I218T	NM_152605	NP_689818	Q8N8C0	ZN781_HUMAN	zinc finger protein 781	223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCACCAGTATGAATTCTTT	0.358													4	44	---	---	---	---	PASS
SIPA1L3	23094	broad.mit.edu	37	19	38572647	38572647	+	Missense_Mutation	SNP	G	C	C	rs138476311	byFrequency	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:38572647G>C	uc002ohk.2	+	3	951	c.442G>C	c.(442-444)GAC>CAC	p.D148H		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	148					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			AAGGTCCAAAGACGTGGAGTT	0.657													18	59	---	---	---	---	PASS
IL28A	282616	broad.mit.edu	37	19	39760578	39760578	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:39760578C>T	uc002oku.1	+	6	580	c.528C>T	c.(526-528)GCC>GCT	p.A176A		NM_172138	NP_742150	Q8IZJ0	IL28A_HUMAN	interleukin 28A precursor	176					response to virus	extracellular space	cytokine activity			ovary(1)|skin(1)	2	all_cancers(60;1.85e-07)|all_lung(34;4.03e-08)|Lung NSC(34;4.66e-08)|all_epithelial(25;6.4e-07)|Ovarian(47;0.0512)		Epithelial(26;5.39e-26)|all cancers(26;4.1e-23)|Lung(45;0.000278)|LUSC - Lung squamous cell carcinoma(53;0.000335)			GCCTCGAGGCCTCTGTCACCT	0.627													7	10	---	---	---	---	PASS
IRGQ	126298	broad.mit.edu	37	19	44096971	44096971	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:44096971C>T	uc002oww.2	-	2	1197	c.1079G>A	c.(1078-1080)GGG>GAG	p.G360E	IRGQ_uc010eiv.2_Missense_Mutation_p.G360E	NM_001007561	NP_001007562	Q8WZA9	IRGQ_HUMAN	immunity-related GTPase family, Q	360	Poly-Gly.						protein binding			ovary(1)|pancreas(1)	2		Prostate(69;0.0199)				CTCCAATCCCCCTCCACCTGC	0.597													36	110	---	---	---	---	PASS
TOMM40	10452	broad.mit.edu	37	19	45397079	45397079	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:45397079C>G	uc002ozx.3	+	5	579	c.478C>G	c.(478-480)CTC>GTC	p.L160V	TOMM40_uc002ozy.3_Missense_Mutation_p.L160V|TOMM40_uc002paa.3_Missense_Mutation_p.L160V|TOMM40_uc002ozz.2_Missense_Mutation_p.L160V	NM_006114	NP_006105	O96008	TOM40_HUMAN	translocase of outer mitochondrial membrane 40	160					protein targeting to mitochondrion	integral to membrane of membrane fraction|integral to mitochondrial outer membrane|mitochondrial outer membrane translocase complex|pore complex	porin activity|protein transmembrane transporter activity|voltage-gated anion channel activity				0	Lung NSC(12;0.0018)|all_lung(12;0.00481)			OV - Ovarian serous cystadenocarcinoma(262;0.0033)|Epithelial(262;0.176)		CAGTGGCAGTCTCAACGCTCA	0.612													7	25	---	---	---	---	PASS
PPP1R13L	10848	broad.mit.edu	37	19	45888902	45888902	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:45888902G>A	uc002pbn.2	-	11	2243	c.2166C>T	c.(2164-2166)ACC>ACT	p.T722T	PPP1R13L_uc002pbm.2_Silent_p.T301T|PPP1R13L_uc002pbo.2_Silent_p.T722T	NM_006663	NP_006654	Q8WUF5	IASPP_HUMAN	protein phosphatase 1, regulatory subunit 13	722	ANK 2.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	transcription corepressor activity|transcription factor binding			skin(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0182)		CGCTGAGCGTGGTGGCGAAGA	0.667													4	16	---	---	---	---	PASS
CARD8	22900	broad.mit.edu	37	19	48734082	48734082	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:48734082C>G	uc002pie.3	-	5	722	c.409G>C	c.(409-411)GAG>CAG	p.E137Q	CARD8_uc002pii.3_Missense_Mutation_p.E242Q|CARD8_uc010xzi.1_Missense_Mutation_p.E137Q|CARD8_uc010els.2_Missense_Mutation_p.E175Q|CARD8_uc010xzj.1_Missense_Mutation_p.E242Q|CARD8_uc010xzk.1_Missense_Mutation_p.E161Q|CARD8_uc002pif.3_Missense_Mutation_p.E137Q|CARD8_uc002pig.3_5'UTR|CARD8_uc002pih.3_Missense_Mutation_p.E192Q|CARD8_uc010xzl.1_Missense_Mutation_p.E192Q|CARD8_uc010xzm.1_Missense_Mutation_p.E242Q	NM_014959	NP_055774	Q9Y2G2	CARD8_HUMAN	caspase recruitment domain family, member 8	137					negative regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion	cytoplasm|nucleus	caspase activator activity|NACHT domain binding|protein homodimerization activity				0		all_lung(116;0.000112)|Lung NSC(112;0.000192)|all_epithelial(76;0.000349)|all_neural(266;0.0228)|Ovarian(192;0.113)|Prostate(7;0.184)		OV - Ovarian serous cystadenocarcinoma(262;0.000112)|all cancers(93;0.000293)|Epithelial(262;0.0129)|GBM - Glioblastoma multiforme(486;0.0336)		ACAGCCTCCTCTGGCTCTGCA	0.632													14	44	---	---	---	---	PASS
SIGLEC11	114132	broad.mit.edu	37	19	50462101	50462101	+	Missense_Mutation	SNP	G	T	T	rs145434757	byFrequency	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:50462101G>T	uc010ybh.1	-	7	1253	c.1162C>A	c.(1162-1164)CGC>AGC	p.R388S	SIGLEC11_uc010ybi.1_Missense_Mutation_p.R388S	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	388	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		CAGACCAGGCGCAGGCTTTGG	0.677													12	18	---	---	---	---	PASS
ZNF473	25888	broad.mit.edu	37	19	50549003	50549003	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:50549003G>C	uc002prn.2	+	5	1540	c.1303G>C	c.(1303-1305)GAG>CAG	p.E435Q	ZNF473_uc002prm.2_Missense_Mutation_p.E435Q|ZNF473_uc010ybo.1_Missense_Mutation_p.E423Q	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	435	C2H2-type 7.|Interaction with SLBP/pre-mRNA complex.				histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		CAAATGCAGTGAGTGTGGGAA	0.483													37	50	---	---	---	---	PASS
ZNF473	25888	broad.mit.edu	37	19	50549375	50549375	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:50549375G>C	uc002prn.2	+	5	1912	c.1675G>C	c.(1675-1677)GAG>CAG	p.E559Q	ZNF473_uc002prm.2_Missense_Mutation_p.E559Q|ZNF473_uc010ybo.1_Missense_Mutation_p.E547Q	NM_001006656	NP_001006657	Q8WTR7	ZN473_HUMAN	zinc finger protein 473	559					histone mRNA 3'-end processing|regulation of transcription, DNA-dependent|termination of RNA polymerase II transcription	Cajal body	DNA binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_neural(266;0.0459)|Ovarian(192;0.0728)		GBM - Glioblastoma multiforme(134;0.00111)|OV - Ovarian serous cystadenocarcinoma(262;0.0058)		AGAACAGAAAGAGAAGTGCTT	0.458													27	26	---	---	---	---	PASS
SHANK1	50944	broad.mit.edu	37	19	51200905	51200905	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:51200905C>T	uc002psx.1	-	13	1897	c.1878G>A	c.(1876-1878)AAG>AAA	p.K626K		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	626					cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GTCTCTTTGCCTTGTCACTGC	0.547													22	96	---	---	---	---	PASS
CD33	945	broad.mit.edu	37	19	51729094	51729094	+	Missense_Mutation	SNP	A	T	T	rs149059669		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:51729094A>T	uc002pwa.2	+	3	494	c.454A>T	c.(454-456)ACT>TCT	p.T152S	CD33_uc010eos.1_Missense_Mutation_p.T152S|CD33_uc010eot.1_Missense_Mutation_p.T25S|CD33_uc010eou.1_RNA	NM_001772	NP_001763	P20138	CD33_HUMAN	CD33 antigen isoform 1 precursor	152	Extracellular (Potential).|Ig-like C2-type.				cell adhesion|cell-cell signaling|negative regulation of cell proliferation	external side of plasma membrane|integral to plasma membrane	receptor activity|sugar binding				0		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000224)|OV - Ovarian serous cystadenocarcinoma(262;0.00468)	Gemtuzumab ozogamicin(DB00056)	CATCCCTGGCACTCTAGAACC	0.587													61	69	---	---	---	---	PASS
C19orf75	284369	broad.mit.edu	37	19	51769043	51769043	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:51769043T>C	uc002pwb.1	+	4	698	c.317T>C	c.(316-318)TTG>TCG	p.L106S	C19orf75_uc010eov.1_RNA|C19orf75_uc010ycw.1_Missense_Mutation_p.L12S	NM_173635	NP_775906	Q8N7X8	CS075_HUMAN	hypothetical protein LOC284369	106						integral to membrane				ovary(1)|pancreas(1)	2						AAGAGTTCTTTGGCTGCCCAG	0.537													46	215	---	---	---	---	PASS
VN1R4	317703	broad.mit.edu	37	19	53770038	53770038	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:53770038C>A	uc010ydu.1	-	1	881	c.881G>T	c.(880-882)AGG>ATG	p.R294M		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	294	Cytoplasmic (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		AAAACAAAACCTGTATACACT	0.393										HNSCC(26;0.072)			9	86	---	---	---	---	PASS
KIR2DS4	3809	broad.mit.edu	37	19	55349311	55349311	+	Silent	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:55349311T>C	uc002qhm.1	+	3	397	c.351T>C	c.(349-351)CCT>CCC	p.P117P	KIR2DS4_uc010yfj.1_Silent_p.P110P|KIR2DS4_uc010yfk.1_RNA|KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc010esg.1_Silent_p.P117P|KIR2DS4_uc002qhn.1_Silent_p.P64P	NM_012314	NP_036446	P43632	KI2S4_HUMAN	killer cell immunoglobulin-like receptor, two	117	Extracellular (Potential).					integral to plasma membrane	receptor activity				0				GBM - Glioblastoma multiforme(193;0.0192)		CCAGTGACCCTCTGGACATGG	0.507													11	379	---	---	---	---	PASS
TMEM150B	284417	broad.mit.edu	37	19	55832413	55832413	+	Splice_Site	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:55832413C>G	uc010esw.1	-	3	166	c.-7_splice	c.e3-1		TMEM150B_uc010yfu.1_5'UTR|TMEM150B_uc010yfv.1_RNA|TMEM150B_uc010yfw.1_Splice_Site|TMEM150B_uc002qki.2_5'UTR	NM_001085488	NP_001078957	A6NC51	T150B_HUMAN	transmembrane protein 150B precursor							integral to membrane					0						ATGCCGGGCTCTGCAGGTGAA	0.597													14	16	---	---	---	---	PASS
NLRP4	147945	broad.mit.edu	37	19	56369842	56369842	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:56369842G>T	uc002qmd.3	+	3	1505	c.1083G>T	c.(1081-1083)CTG>CTT	p.L361L	NLRP4_uc002qmf.2_Silent_p.L286L|NLRP4_uc010etf.2_Silent_p.L192L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	361	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GAAAAGACCTGGCCCTGACCT	0.532													27	30	---	---	---	---	PASS
ZNF211	10520	broad.mit.edu	37	19	58152141	58152141	+	Missense_Mutation	SNP	A	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:58152141A>C	uc002qpq.2	+	3	467	c.287A>C	c.(286-288)CAG>CCG	p.Q96P	ZNF211_uc010yhb.1_Missense_Mutation_p.Q100P|ZNF211_uc002qpp.2_Missense_Mutation_p.Q109P|ZNF211_uc002qpr.2_Missense_Mutation_p.Q160P|ZNF211_uc002qps.2_Missense_Mutation_p.Q161P|ZNF211_uc002qpt.2_Missense_Mutation_p.Q108P|ZNF211_uc010yhc.1_Missense_Mutation_p.Q108P|ZNF211_uc010yhd.1_Missense_Mutation_p.Q35P|ZNF211_uc010yhe.1_Missense_Mutation_p.Q87P	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	96	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGAGTGCCACAGTTCAGGACT	0.433													9	38	---	---	---	---	PASS
ZNF211	10520	broad.mit.edu	37	19	58153536	58153536	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:58153536G>T	uc002qpq.2	+	3	1862	c.1682G>T	c.(1681-1683)GGA>GTA	p.G561V	ZNF211_uc010yhb.1_Missense_Mutation_p.G565V|ZNF211_uc002qpp.2_Missense_Mutation_p.G574V|ZNF211_uc002qpr.2_Missense_Mutation_p.G625V|ZNF211_uc002qps.2_Missense_Mutation_p.G626V|ZNF211_uc002qpt.2_Missense_Mutation_p.G573V|ZNF211_uc010yhc.1_Missense_Mutation_p.G573V|ZNF211_uc010yhd.1_Missense_Mutation_p.G500V|ZNF211_uc010yhe.1_Missense_Mutation_p.G552V	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	561						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GTTCACATTGGAGAAAAGCCT	0.433													33	120	---	---	---	---	PASS
ZNF135	7694	broad.mit.edu	37	19	58579130	58579130	+	Silent	SNP	C	T	T	rs141591921		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:58579130C>T	uc010yhq.1	+	5	1410	c.1314C>T	c.(1312-1314)ACC>ACT	p.T438T	ZNF135_uc002qre.2_Silent_p.T426T|ZNF135_uc002qrd.1_Intron|ZNF135_uc002qrf.2_Silent_p.T384T|ZNF135_uc002qrg.2_Silent_p.T396T|ZNF135_uc010yhr.1_Silent_p.T247T	NM_003436	NP_003427	B4DHH9	B4DHH9_HUMAN	zinc finger protein 135 isoform 2	438					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0412)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0161)		CACTCCTGACCGAGCATCGGA	0.547													24	59	---	---	---	---	PASS
ANGPT4	51378	broad.mit.edu	37	20	896599	896599	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:896599C>G	uc002wei.2	-	1	362	c.259G>C	c.(259-261)GTG>CTG	p.V87L	ANGPT4_uc010zpn.1_Missense_Mutation_p.V81L	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	87	Potential.				anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						AGCTGTTTCACCTGCTGGGTG	0.637													15	59	---	---	---	---	PASS
SIRPB1	10326	broad.mit.edu	37	20	1552435	1552435	+	Nonsense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:1552435C>A	uc010gai.2	-	3	781	c.682G>T	c.(682-684)GAG>TAG	p.E228*	SIRPB1_uc002wfk.3_Intron	NM_006065	NP_006056	O00241	SIRB1_HUMAN	signal-regulatory protein beta 1 isoform 1	228	Ig-like C1-type 1.|Extracellular (Potential).				cell junction assembly|cell surface receptor linked signaling pathway	integral to plasma membrane	protein binding			ovary(1)	1						TGGGCTATCTCGCAGATGACT	0.607													20	59	---	---	---	---	PASS
ADAM33	80332	broad.mit.edu	37	20	3652789	3652789	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:3652789C>G	uc002wit.2	-	14	1676	c.1589G>C	c.(1588-1590)TGG>TCG	p.W530S	ADAM33_uc002wiq.1_5'Flank|ADAM33_uc002wir.1_Missense_Mutation_p.W530S|ADAM33_uc002wis.2_Missense_Mutation_p.W52S|ADAM33_uc002wiu.2_Missense_Mutation_p.W530S|uc002wiv.1_5'Flank|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	530	Extracellular (Potential).|Cys-rich.				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						ACCAGGCCCCCAGAGCTGCTG	0.642													9	20	---	---	---	---	PASS
CHGB	1114	broad.mit.edu	37	20	5904410	5904410	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:5904410C>A	uc002wmg.2	+	4	1926	c.1620C>A	c.(1618-1620)GAC>GAA	p.D540E	CHGB_uc010zqz.1_Missense_Mutation_p.D223E	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	540						extracellular region	hormone activity			breast(3)|skin(2)|ovary(1)	6						AAAGAAGAGACAACATGAATG	0.448													18	58	---	---	---	---	PASS
PLCB1	23236	broad.mit.edu	37	20	8862385	8862385	+	Silent	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:8862385T>C	uc002wnb.2	+	32	3543	c.3540T>C	c.(3538-3540)GGT>GGC	p.G1180G	PLCB1_uc002wna.2_3'UTR	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1180					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						GCAATCACGGTTCTGCCCCTC	0.483													53	186	---	---	---	---	PASS
PLCB4	5332	broad.mit.edu	37	20	9368183	9368183	+	Missense_Mutation	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:9368183T>A	uc002wnf.2	+	14	1274	c.1138T>A	c.(1138-1140)TGT>AGT	p.C380S	PLCB4_uc010gbw.1_Missense_Mutation_p.C380S|PLCB4_uc010gbx.2_Missense_Mutation_p.C380S|PLCB4_uc002wne.2_Missense_Mutation_p.C380S|PLCB4_uc002wnh.2_Missense_Mutation_p.C227S	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	380	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						AAAAGCAATGTGTACAGATAT	0.343													16	32	---	---	---	---	PASS
RALGAPA2	57186	broad.mit.edu	37	20	20486105	20486105	+	Nonsense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:20486105C>A	uc002wrz.2	-	34	5145	c.5002G>T	c.(5002-5004)GAA>TAA	p.E1668*	RALGAPA2_uc010gcx.2_Nonsense_Mutation_p.E1372*|RALGAPA2_uc010zsg.1_Nonsense_Mutation_p.E1116*|RALGAPA2_uc002wsa.1_Nonsense_Mutation_p.E440*	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	1668	Rap-GAP.				activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						CTTCCTCTTTCATTAGAGAGG	0.373													5	12	---	---	---	---	PASS
DNMT3B	1789	broad.mit.edu	37	20	31380550	31380550	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:31380550G>A	uc002wyc.2	+	9	1361	c.1040G>A	c.(1039-1041)GGC>GAC	p.G347D	DNMT3B_uc010ztx.1_RNA|DNMT3B_uc010zty.1_Intron|DNMT3B_uc002wyd.2_Missense_Mutation_p.G347D|DNMT3B_uc002wye.2_Missense_Mutation_p.G347D|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Missense_Mutation_p.G305D|DNMT3B_uc010zua.1_Missense_Mutation_p.G271D|DNMT3B_uc002wyf.2_Missense_Mutation_p.G359D|DNMT3B_uc002wyg.2_Missense_Mutation_p.G46D	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	347					negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						GGGATCGAGGGCCTCAAACCC	0.632													20	32	---	---	---	---	PASS
SLC32A1	140679	broad.mit.edu	37	20	37356487	37356487	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:37356487G>T	uc002xjc.2	+	2	1046	c.783G>T	c.(781-783)AAG>AAT	p.K261N		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	261	Helical; (Potential).			K -> R (in Ref. 4; AAH36458).	neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	AGAACCTCAAGGCCGTGTCCA	0.597													9	19	---	---	---	---	PASS
DHX35	60625	broad.mit.edu	37	20	37657096	37657096	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:37657096G>A	uc002xjh.2	+	19	1848	c.1837G>A	c.(1837-1839)GGC>AGC	p.G613S	DHX35_uc010zwa.1_Missense_Mutation_p.G458S|DHX35_uc010zwb.1_Missense_Mutation_p.G458S|DHX35_uc010zwc.1_Missense_Mutation_p.G582S	NM_021931	NP_068750	Q9H5Z1	DHX35_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 35	613						catalytic step 2 spliceosome	ATP binding|ATP-dependent helicase activity|nucleic acid binding			lung(1)|kidney(1)|skin(1)	3		Myeloproliferative disorder(115;0.00878)				CATTGTCTCCGGCTTCTTCGC	0.493													32	62	---	---	---	---	PASS
SEMG1	6406	broad.mit.edu	37	20	43836175	43836175	+	Silent	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:43836175C>T	uc002xni.2	+	2	294	c.237C>T	c.(235-237)TCC>TCT	p.S79S	SEMG1_uc002xnj.2_Silent_p.S79S|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Silent_p.S79S	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	79					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				ATGACCAGTCCCGAAAAAGTC	0.383													18	79	---	---	---	---	PASS
ZNF217	7764	broad.mit.edu	37	20	52193465	52193465	+	Missense_Mutation	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:52193465T>A	uc002xwq.3	-	3	2109	c.1838A>T	c.(1837-1839)AAA>ATA	p.K613I	ZNF217_uc010gij.1_Missense_Mutation_p.K605I	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	613					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			TTTATTCACTTTATCAGCACT	0.438													23	36	---	---	---	---	PASS
PHACTR3	116154	broad.mit.edu	37	20	58318296	58318296	+	Missense_Mutation	SNP	A	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr20:58318296A>G	uc002yau.2	+	2	720	c.253A>G	c.(253-255)AAC>GAC	p.N85D	PHACTR3_uc002yat.2_Missense_Mutation_p.N82D|PHACTR3_uc010zzw.1_Missense_Mutation_p.N44D|PHACTR3_uc002yav.2_Missense_Mutation_p.N44D|PHACTR3_uc002yaw.2_Missense_Mutation_p.N44D|PHACTR3_uc002yax.2_Missense_Mutation_p.N44D	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	85						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			GAAAAAGAAAAACGAAAAACT	0.567													17	39	---	---	---	---	PASS
KRTAP13-2	337959	broad.mit.edu	37	21	31744283	31744283	+	Silent	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr21:31744283G>A	uc002ynz.3	-	1	275	c.249C>T	c.(247-249)CCC>CCT	p.P83P		NM_181621	NP_853652	Q52LG2	KR132_HUMAN	keratin associated protein 13-2	83	4.|5 X 10 AA approximate repeats.					intermediate filament					0						AGGAGGTTCTGGGGCGGTAGC	0.607													16	33	---	---	---	---	PASS
KRTAP13-3	337960	broad.mit.edu	37	21	31797811	31797811	+	Missense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr21:31797811C>G	uc002yob.1	-	1	420	c.420G>C	c.(418-420)CAG>CAC	p.Q140H		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	140						intermediate filament				ovary(1)|lung(1)	2						ATCTATAACTCTGGGAAGGGG	0.468													8	22	---	---	---	---	PASS
PWP2	5822	broad.mit.edu	37	21	45548185	45548185	+	Missense_Mutation	SNP	T	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr21:45548185T>C	uc002zeb.2	+	19	2507	c.2417T>C	c.(2416-2418)TTA>TCA	p.L806S		NM_005049	NP_005040	Q15269	PWP2_HUMAN	PWP2 periodic tryptophan protein homolog	806						cytoplasm|nucleolus	signal transducer activity			pancreas(1)	1				STAD - Stomach adenocarcinoma(101;0.172)|Colorectal(79;0.2)		CTGGAGTTTTTAGCTTCCTCC	0.478													18	44	---	---	---	---	PASS
TRPM2	7226	broad.mit.edu	37	21	45815337	45815337	+	Nonsense_Mutation	SNP	C	G	G			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr21:45815337C>G	uc002zet.1	+	13	2048	c.1835C>G	c.(1834-1836)TCA>TGA	p.S612*	TRPM2_uc002zeu.1_Nonsense_Mutation_p.S612*|TRPM2_uc002zew.1_Nonsense_Mutation_p.S612*|TRPM2_uc010gpt.1_Nonsense_Mutation_p.S612*|TRPM2_uc002zex.1_Nonsense_Mutation_p.S398*|TRPM2_uc002zey.1_Nonsense_Mutation_p.S125*	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	612	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAGCGTTCCTCAGGCCATGTG	0.502													26	90	---	---	---	---	PASS
ITGB2	3689	broad.mit.edu	37	21	46310005	46310005	+	Silent	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr21:46310005C>A	uc002zgd.2	-	11	1589	c.1545G>T	c.(1543-1545)GGG>GGT	p.G515G	ITGB2_uc002zge.2_Silent_p.G515G|ITGB2_uc002zgf.3_Silent_p.G515G|ITGB2_uc011afl.1_Silent_p.G437G|ITGB2_uc010gpw.2_Silent_p.G458G|ITGB2_uc002zgg.2_Silent_p.G515G	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	515	II.|Extracellular (Potential).|Cysteine-rich tandem repeats.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	ACAGGCACTGCCCGCAGACAC	0.617													7	25	---	---	---	---	PASS
CSF2RB	1439	broad.mit.edu	37	22	37322057	37322057	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr22:37322057C>T	uc003aqa.3	+	4	446	c.229C>T	c.(229-231)CTC>TTC	p.L77F	CSF2RB_uc003aqc.3_Missense_Mutation_p.L77F	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	77	Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	GTCCTGTGACCTCAGTGATGA	0.502													8	10	---	---	---	---	PASS
POLR3H	171568	broad.mit.edu	37	22	41926859	41926859	+	Silent	SNP	G	A	A	rs140901049	byFrequency	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr22:41926859G>A	uc003baf.2	-	6	453	c.393C>T	c.(391-393)TAC>TAT	p.Y131Y	POLR3H_uc003bae.2_RNA|POLR3H_uc003bag.2_Silent_p.Y131Y|POLR3H_uc003bai.2_Silent_p.Y102Y	NM_138338	NP_612211	Q9Y535	RPC8_HUMAN	polymerase (RNA) III (DNA directed) polypeptide	131					innate immune response|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity			skin(1)	1						CCTCCGTCTCGTACTCCCACA	0.642													15	24	---	---	---	---	PASS
FRMPD4	9758	broad.mit.edu	37	X	12735105	12735105	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:12735105G>T	uc004cuz.1	+	15	3033	c.2527G>T	c.(2527-2529)GAT>TAT	p.D843Y	FRMPD4_uc011mij.1_Missense_Mutation_p.D835Y	NM_014728	NP_055543	Q14CM0	FRPD4_HUMAN	FERM and PDZ domain containing 4	843					positive regulation of synapse structural plasticity	cytoskeleton|dendritic spine	phosphatidylinositol-4,5-bisphosphate binding|protein binding			central_nervous_system(5)|ovary(3)|skin(2)|large_intestine(1)|lung(1)|pancreas(1)	13						CCTGCAAAATGATGAGATCCC	0.577													30	25	---	---	---	---	PASS
MED14	9282	broad.mit.edu	37	X	40539210	40539210	+	Missense_Mutation	SNP	C	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:40539210C>T	uc004dex.3	-	21	2926	c.2786G>A	c.(2785-2787)CGG>CAG	p.R929Q		NM_004229	NP_004220	O60244	MED14_HUMAN	mediator complex subunit 14	929					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			breast(2)|kidney(1)|skin(1)	4						ACCTCGACTCCGGCAGTATAT	0.463													6	24	---	---	---	---	PASS
DGKK	139189	broad.mit.edu	37	X	50136227	50136227	+	Silent	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:50136227G>T	uc010njr.1	-	9	1578	c.1518C>A	c.(1516-1518)ATC>ATA	p.I506I		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	506	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					GGAGGAAGACGATCCCCTGAT	0.448													18	16	---	---	---	---	PASS
XIST	7503	broad.mit.edu	37	X	73069027	73069027	+	RNA	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:73069027G>C	uc004ebm.1	-	1		c.3562C>G				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TTACTACTTTGTTCTTTAATT	0.433													15	11	---	---	---	---	PASS
PCDH11X	27328	broad.mit.edu	37	X	91132500	91132500	+	Missense_Mutation	SNP	G	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:91132500G>T	uc004efk.1	+	2	2106	c.1261G>T	c.(1261-1263)GCA>TCA	p.A421S	PCDH11X_uc004efl.1_Missense_Mutation_p.A421S|PCDH11X_uc004efo.1_Missense_Mutation_p.A421S|PCDH11X_uc010nmv.1_Missense_Mutation_p.A421S|PCDH11X_uc004efm.1_Missense_Mutation_p.A421S|PCDH11X_uc004efn.1_Missense_Mutation_p.A421S|PCDH11X_uc004efh.1_Missense_Mutation_p.A421S|PCDH11X_uc004efj.1_Missense_Mutation_p.A421S	NM_032968	NP_116750	Q9BZA7	PC11X_HUMAN	protocadherin 11 X-linked isoform c	421	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to plasma membrane	calcium ion binding			large_intestine(2)	2						CCTGGAGACTGCAGCATATCT	0.433													22	25	---	---	---	---	PASS
DRP2	1821	broad.mit.edu	37	X	100503557	100503557	+	Missense_Mutation	SNP	G	C	C	rs149294275	by1000genomes	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:100503557G>C	uc004egz.2	+	14	1878	c.1509G>C	c.(1507-1509)TTG>TTC	p.L503F	DRP2_uc011mrh.1_Missense_Mutation_p.L425F	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	503					central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						TTGCATGCTTGTGTGGCACGG	0.468													58	58	---	---	---	---	PASS
VGLL1	51442	broad.mit.edu	37	X	135631089	135631089	+	Missense_Mutation	SNP	G	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:135631089G>A	uc004ezy.2	+	3	726	c.556G>A	c.(556-558)GCC>ACC	p.A186T	MIR934_hsa-mir-934|MI0005756_5'Flank	NM_016267	NP_057351	Q99990	VGLL1_HUMAN	vestigial like 1	186					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	transcription coactivator activity				0	Acute lymphoblastic leukemia(192;0.000127)					GGAATCTGCCGCCAGGGAGAA	0.577													38	23	---	---	---	---	PASS
FMR1	2332	broad.mit.edu	37	X	147030327	147030327	+	Missense_Mutation	SNP	T	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:147030327T>A	uc010nst.2	+	17	2051	c.1862T>A	c.(1861-1863)GTG>GAG	p.V621E	FMR1_uc004fcj.2_Missense_Mutation_p.V581E|FMR1_uc004fck.3_Missense_Mutation_p.V575E|FMR1_uc004fcl.3_Missense_Mutation_p.V461E|FMR1_uc011mxa.1_Missense_Mutation_p.V251E	NM_002024	NP_002015	Q06787	FMR1_HUMAN	fragile X mental retardation 1	621	Interaction with RANBP9.				mRNA transport|negative regulation of translational initiation	cytoplasm|mRNA cap binding complex|nucleolus|nucleoplasm|soluble fraction	mRNA binding|protein binding			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGACAGCGTGGATGGTCAG	0.423									Fragile_X_syndrome				27	23	---	---	---	---	PASS
CNGA2	1260	broad.mit.edu	37	X	150912443	150912443	+	Missense_Mutation	SNP	G	C	C			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:150912443G>C	uc004fey.1	+	7	1692	c.1468G>C	c.(1468-1470)GAG>CAG	p.E490Q		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	490	cAMP (By similarity).|Cytoplasmic (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					catcggcaaGGAGATGTACAT	0.423													35	35	---	---	---	---	PASS
RBMY1A1	5940	broad.mit.edu	37	Y	23702602	23702602	+	Missense_Mutation	SNP	C	A	A			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrY:23702602C>A	uc004fuq.3	+	4	444	c.332C>A	c.(331-333)TCT>TAT	p.S111Y	RBMY1A1_uc010nxa.2_Missense_Mutation_p.S111Y|RBMY1A1_uc004fur.3_Intron|RBMY1A1_uc011nbd.1_Missense_Mutation_p.S76Y	NM_001006120	NP_001006120	Q15414	RBY1A_HUMAN	RNA binding motif protein, Y-linked, family 1,	111					mRNA processing|RNA splicing|spermatogenesis	nucleus	nucleotide binding|RNA binding				0						AGTCTGAGATCTGCAAGAGGA	0.458													8	70	---	---	---	---	PASS
WDR1	9948	broad.mit.edu	37	4	10089385	10089385	+	Frame_Shift_Del	DEL	C	-	-			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr4:10089385delC	uc003gmf.2	-	8	1180	c.897delG	c.(895-897)GGGfs	p.G299fs	WDR1_uc003gmg.2_Frame_Shift_Del_p.G159fs|WDR1_uc003gmh.1_RNA|WDR1_uc011bwu.1_Frame_Shift_Del_p.G134fs	NM_017491	NP_059830	O75083	WDR1_HUMAN	WD repeat-containing protein 1 isoform 1	299					platelet activation|platelet degranulation|sensory perception of sound	cytoskeleton|cytosol|extracellular region	actin binding			ovary(2)|pancreas(1)	3				STAD - Stomach adenocarcinoma(129;0.000703)|Colorectal(103;0.0057)|LUSC - Lung squamous cell carcinoma(721;0.0232)		AGTTGATGTACCCGGACAGGG	0.607													10	7	---	---	---	---	
Unknown	0	broad.mit.edu	37	8	37593486	37593487	+	Frame_Shift_Ins	INS	-	A	A	rs112819064		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:37593486_37593487insA	uc003xkb.1	-	2	878_879	c.529_530insT	c.(529-531)TCTfs	p.S177fs	ERLIN2_uc003xkc.3_5'Flank|ERLIN2_uc003xkd.2_5'Flank|ERLIN2_uc003xke.3_5'Flank|ERLIN2_uc003xkf.3_5'Flank|ERLIN2_uc003xkg.2_5'Flank					SubName: Full=Putative uncharacterized protein ENSP00000328874;																		ATCAAGGAGAGAAAAAAAAAAA	0.203													4	2	---	---	---	---	
SFRP1	6422	broad.mit.edu	37	8	41166638	41166640	+	In_Frame_Del	DEL	GCT	-	-	rs3055861		TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr8:41166638_41166640delGCT	uc003xnt.2	-	1	341_343	c.39_41delAGC	c.(37-42)GCAGCC>GCC	p.13_14AA>A		NM_003012	NP_003003	Q8N474	SFRP1_HUMAN	secreted frizzled-related protein 1 precursor	13_14				Missing (in Ref. 1 and 3).	brain development|canonical Wnt receptor signaling pathway|cellular response to BMP stimulus|cellular response to estradiol stimulus|cellular response to fibroblast growth factor stimulus|cellular response to heparin|cellular response to hypoxia|cellular response to interleukin-1|cellular response to prostaglandin E stimulus|cellular response to starvation|cellular response to transforming growth factor beta stimulus|cellular response to tumor necrosis factor|cellular response to vitamin D|DNA fragmentation involved in apoptotic nuclear change|dorsal/ventral axis specification|hemopoietic progenitor cell differentiation|hemopoietic stem cell differentiation|menstrual cycle phase|negative regulation of androgen receptor signaling pathway|negative regulation of B cell differentiation|negative regulation of bone remodeling|negative regulation of canonical Wnt receptor signaling pathway involved in controlling type B pancreatic cell proliferation|negative regulation of cell growth|negative regulation of cell migration|negative regulation of cysteine-type endopeptidase activity|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast apoptosis|negative regulation of fibroblast proliferation|negative regulation of insulin secretion|negative regulation of ossification|negative regulation of osteoblast proliferation|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|osteoblast differentiation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell growth|positive regulation of epithelial cell proliferation|positive regulation of fat cell differentiation|positive regulation of fibroblast apoptosis|positive regulation of focal adhesion assembly|positive regulation of non-canonical Wnt receptor signaling pathway|positive regulation of Rac GTPase activity|positive regulation of smoothened signaling pathway|positive regulation of stress fiber assembly|positive regulation of transcription, DNA-dependent|regulation of angiogenesis|regulation of cell cycle process|response to drug|response to organic cyclic compound|vasculature development	cell surface|cytosol|extracellular space|plasma membrane|proteinaceous extracellular matrix	cysteine-type endopeptidase activity|drug binding|frizzled binding|heparin binding|identical protein binding|PDZ domain binding|Wnt receptor activity|Wnt-protein binding			central_nervous_system(1)	1	Breast(1;9.19e-13)|Ovarian(28;0.00769)|Colorectal(14;0.0305)|Lung SC(25;0.211)	all_lung(54;0.0034)|Lung NSC(58;0.0134)|Hepatocellular(245;0.023)|Esophageal squamous(32;0.0559)	BRCA - Breast invasive adenocarcinoma(1;1.11e-10)|LUSC - Lung squamous cell carcinoma(45;0.00894)|COAD - Colon adenocarcinoma(11;0.0174)			CACGCCCAGGGCTGCCCCGCGGC	0.764													4	4	---	---	---	---	
FRY	10129	broad.mit.edu	37	13	32868646	32868646	+	Frame_Shift_Del	DEL	A	-	-			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr13:32868646delA	uc001utx.2	+	60	9218	c.8722delA	c.(8722-8724)ATGfs	p.M2908fs	FRY_uc010tdw.1_RNA|FRY_uc001utz.2_Frame_Shift_Del_p.M439fs|FRY_uc010tdx.1_Frame_Shift_Del_p.M278fs	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2908					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CATCCAGTCCATGCTGGAGTG	0.547													39	20	---	---	---	---	
C14orf105	55195	broad.mit.edu	37	14	57949802	57949803	+	Frame_Shift_Ins	INS	-	T	T			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr14:57949802_57949803insT	uc001xcy.2	-	3	516_517	c.373_374insA	c.(373-375)AGGfs	p.R125fs	C14orf105_uc010trl.1_Frame_Shift_Ins_p.R125fs|C14orf105_uc010trm.1_Frame_Shift_Ins_p.R37fs|C14orf105_uc010trn.1_Frame_Shift_Ins_p.R37fs|C14orf105_uc001xcz.2_Frame_Shift_Ins_p.R125fs|C14orf105_uc010aox.1_RNA|C14orf105_uc010aoy.1_Frame_Shift_Ins_p.R47fs	NM_018168	NP_060638	Q9NVL8	CN105_HUMAN	hypothetical protein LOC55195	125											0						GTGCATTGTCCTGGCTTCTCGC	0.530													22	12	---	---	---	---	
SSC5D	284297	broad.mit.edu	37	19	56029616	56029617	+	In_Frame_Ins	INS	-	CCA	CCA	rs150781976	by1000genomes	TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chr19:56029616_56029617insCCA	uc002qlg.3	+	14	4060_4061	c.3973_3974insCCA	c.(3973-3975)CCC>CCCACC	p.1327_1328insT		NM_001144950	NP_001138422	A1L4H1	SRCRL_HUMAN	scavenger receptor cysteine-rich glycoprotein	1327_1328	Thr-rich.|Pro-rich.					extracellular region|membrane	scavenger receptor activity				0						gacccctcaccccACAACTCCT	0.267													4	2	---	---	---	---	
STARD8	9754	broad.mit.edu	37	X	67937289	67937289	+	Frame_Shift_Del	DEL	C	-	-			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:67937289delC	uc004dxa.2	+	5	665	c.293delC	c.(292-294)GCCfs	p.A98fs	STARD8_uc004dxb.2_Frame_Shift_Del_p.A178fs|STARD8_uc004dxc.3_Frame_Shift_Del_p.A98fs	NM_014725	NP_055540	Q92502	STAR8_HUMAN	StAR-related lipid transfer (START) domain	98					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|focal adhesion	GTPase activator activity			breast(3)|ovary(2)|pancreas(1)	6						CCAGGCCGTGCCCCCAGCTCG	0.647													4	5	---	---	---	---	
GPR101	83550	broad.mit.edu	37	X	136113576	136113576	+	Frame_Shift_Del	DEL	G	-	-			TCGA-66-2789-01A-01D-0983-08	TCGA-66-2789-11A-01D-0983-08									Somatic	Phase_I	Capture				Illumina GAIIx	fab8faeb-35b3-42f0-b0af-4dfb1325a21a	67957e04-4311-47a6-b98a-2531bc6aeed5	g.chrX:136113576delG	uc011mwh.1	-	1	258	c.258delC	c.(256-258)CCCfs	p.P86fs		NM_054021	NP_473362	Q96P66	GP101_HUMAN	G protein-coupled receptor 101	86	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					CCACCACCCAGGGGGCCACGA	0.617													17	17	---	---	---	---	
