Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADA	100	genome.wustl.edu	37	20	43257689	43257689	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	20	43257689	43257689	C	T	SNP	ADA	NM_000022.2	human	genbank	58_37c	-1	reviewed	missense	c.217	p.A73T	1.000	HMMPfam_A_deaminase,superfamily_SSF51556	HMMPfam_A_deaminase,PatternScan_A_DEAMINASE,superfamily_SSF51556	-	no_errors
ATP1B3	483	genome.wustl.edu	37	3	141622516	141622516	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	3	141622516	141622516	C	G	SNP	ATP1B3	NM_001679.2	human	genbank	58_37c	+1	reviewed	nonsense	c.164	p.S55*	0.753	HMMPfam_Na_K-ATPase	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_1	-	no_errors
BICD1	636	genome.wustl.edu	37	12	32520614	32520614	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	12	32520614	32520614	G	A	SNP	BICD1	NM_001003398.1	human	genbank	58_37c	+1	reviewed	missense	c.2471	p.S824N	1.000	NULL	HMMPfam_BicD	-	no_errors
BMP4	652	genome.wustl.edu	37	14	54416966	54416966	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	14	54416966	54416966	G	T	SNP	BMP4	NM_001202.3	human	genbank	58_37c	-1	reviewed	nonsense	c.1011	p.C337*	1.000	HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	HMMPfam_TGFb_propeptide,HMMPfam_TGF_beta,HMMSmart_SM00204,PatternScan_TGF_BETA_1,superfamily_Cystine-knot cytokines	-	no_errors
C12orf71	0	genome.wustl.edu	37	12	27235309	27235309	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	12	27235309	27235309	C	A	SNP	C12orf71	NM_001080406.1	human	genbank	58_37c	-1	inferred	missense	c.108	p.E36D	0.010	NULL	NULL	-	no_errors
C8orf83	0	genome.wustl.edu	37	8	93929213	93929213	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	8	93929213	93929213	C	T	SNP	C8orf83	ENST00000378861	human	ensembl	58_37c	-1	known	missense	c.5	p.G2D	1.000	NULL	NULL	-	no_errors
CARD14	79092	genome.wustl.edu	37	17	78171932	78171932	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	17	78171932	78171932	C	T	SNP	CARD14	NM_024110.2	human	genbank	58_37c	+1	reviewed	silent	c.1629	p.V543	0.000	NULL	HMMPfam_CARD,superfamily_PDZ domain-like,superfamily_DEATH domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CBS	875	genome.wustl.edu	37	21	44479399	44479399	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	21	44479399	44479399	C	T	SNP	CBS	NM_000071.2	human	genbank	58_37c	-1	reviewed	missense	c.1160	p.S387N	0.993	superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes	HMMPfam_CBS,HMMSmart_SM00116,PatternScan_CYS_SYNTHASE,HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes,superfamily_CBS-domain	-	no_errors
CCDC39	339829	genome.wustl.edu	37	3	180359800	180359800	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	3	180359800	180359800	G	A	SNP	CCDC39	NM_181426.1	human	genbank	58_37c	-1	validated	nonsense	c.1855	p.Q619*	1.000	NULL	superfamily_Prefoldin	-	no_errors
CDC20B	166979	genome.wustl.edu	37	5	54436170	54436170	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	5	54436170	54436170	G	C	SNP	CDC20B	NM_152623.2	human	genbank	58_37c	-1	validated	silent	c.552	p.L184	0.997	superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
CDH11	1009	genome.wustl.edu	37	16	65032473	65032473	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	16	65032473	65032473	G	T	SNP	CDH11	NM_001797.2	human	genbank	58_37c	-1	reviewed	missense	c.515	p.S172Y	1.000	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	-	no_errors
CDKL2	8999	genome.wustl.edu	37	4	76529120	76529120	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	4	76529120	76529120	G	A	SNP	CDKL2	NM_003948.3	human	genbank	58_37c	-1	reviewed	nonsense	c.676	p.Q226*	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CHD7	55636	genome.wustl.edu	37	8	61693870	61693870	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	8	61693870	61693870	C	A	SNP	CHD7	NM_017780.2	human	genbank	58_37c	+1	reviewed	silent	c.1977	p.P659	1.000	NULL	HMMPfam_SNF2_N,HMMPfam_Chromo,HMMSmart_SM00298,HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_BRK,HMMSmart_SM00592,HMMSmart_SM00487,superfamily_Chromo domain-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
COBRA1	25920	genome.wustl.edu	37	9	140166539	140166553	+	In_Frame_Del	DEL	CCTTTGGCGACTTGG	CCTTTGGCGACTTGG	-	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	CCTTTGGCGACTTGG	CCTTTGGCGACTTGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	9	140166539	140166553	CCTTTGGCGACTTGG	-	DEL	COBRA1	NM_015456.3	human	genbank	58_37c	+1	validated	in_frame_del	c.1352_1366	p.LAFGD455in_frame_del	1.000:0.991:0.997:0.989:0.889:0.886:0.879:0.152:0.999:1.000:1.000:1.000:1.000:1.000:1.000	HMMPfam_COBRA1	HMMPfam_COBRA1	-	no_errors
ELL2	22936	genome.wustl.edu	37	5	95236466	95236466	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	5	95236466	95236466	C	G	SNP	ELL2	NM_012081.5	human	genbank	58_37c	-1	validated	missense	c.885	p.Q295H	1.000	NULL	HMMPfam_Occludin_ELL,HMMPfam_ELL	-	no_errors
ENSG00000245058	0	genome.wustl.edu	37	6	26055965	26055965	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	6	26055965	26055965	C	T	SNP	HFE	NM_000410.3	human	genbank	58_37c	+1	reviewed	5_prime_flanking_region	c.-31704	NULL	0.000	-	-	-	no_errors
ENSG00000247417	0	genome.wustl.edu	37	4	76835943	76835943	+	RNA	SNP	A	A	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	4	76835943	76835943	A	T	SNP	NAAA	NM_014435.3	human	genbank	58_37c	-1	reviewed	intronic	c.1080+78	e10+78	0.000	-	-	-	no_errors
ENSG00000247742	0	genome.wustl.edu	37	12	118589978	118589978	+	RNA	SNP	C	C	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	12	118589978	118589978	C	G	SNP	TAOK3	NM_016281.3	human	genbank	58_37c	-1	validated	intronic	c.2535+54	e18+54	0.000	-	-	-	no_errors
EXPH5	23086	genome.wustl.edu	37	11	108381164	108381164	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	11	108381164	108381164	C	T	SNP	EXPH5	NM_015065.2	human	genbank	58_37c	-1	validated	silent	c.5070	p.Q1690	0.485	NULL	NULL	-	no_errors
FAM129C	199786	genome.wustl.edu	37	19	17664329	17664329	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	17664329	17664329	C	T	SNP	FAM129C	NM_173544.4	human	genbank	58_37c	+1	validated	missense	c.2051	p.S684F	0.001	NULL	HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
FREM3	166752	genome.wustl.edu	37	4	144619575	144619575	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	4	144619575	144619575	C	T	SNP	FREM3	ENST00000329798	human	ensembl	58_37c	-1	known	missense	c.2254	p.D752N	1.000	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
GMPS	8833	genome.wustl.edu	37	3	155623998	155623998	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	3	155623998	155623998	G	C	SNP	GMPS	NM_003875.2	human	genbank	58_37c	+1	reviewed	missense	c.472	p.D158H	1.000	HMMPfam_GATase,superfamily_Class I glutamine amidotransferase-like	HMMPfam_GATase,HMMPfam_GMP_synt_C,HMMPfam_ExsB,superfamily_Class I glutamine amidotransferase-like,superfamily_Adenine nucleotide alpha hydrolases-like,superfamily_GMP synthetase C-terminal dimerisation domain	-	no_errors
HPSE	10855	genome.wustl.edu	37	4	84255926	84255926	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	4	84255926	84255926	G	T	SNP	HPSE	NM_001098540.1	human	genbank	58_37c	-1	validated	missense	c.10	p.R4S	0.007	NULL	HMMPfam_Glyco_hydro_79n,superfamily_(Trans)glycosidases	-	no_errors
HRC	3270	genome.wustl.edu	37	19	49657889	49657890	+	In_Frame_Ins	INS	-	-	TCCTCCTCC	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	49657889	49657890	-	TCCTCCTCC	INS	HRC	NM_002152.2	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.606_605	p.205in_frame_insEEE	0.000:0.004	NULL	HMMPfam_Hist_rich_Ca-bd	-	no_errors
IFNA2	3440	genome.wustl.edu	37	9	21385235	21385235	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	9	21385235	21385235	G	T	SNP	IFNA2	NM_000605.3	human	genbank	58_37c	-1	validated	missense	c.94	p.L32M	0.056	HMMPfam_Interferon,superfamily_4_helix_cytokine	HMMPfam_Interferon,HMMSmart_IFabd,PatternScan_INTERFERON_A_B_D,superfamily_4_helix_cytokine	-	no_errors
IFT88	8100	genome.wustl.edu	37	13	21173632	21173632	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	13	21173632	21173632	G	T	SNP	IFT88	NM_175605.3	human	genbank	58_37c	+1	reviewed	missense	c.767	p.R256I	1.000	HMMPfam_TPR_1,HMMSmart_SM00671,HMMSmart_SM00028,superfamily_TPR-like	HMMPfam_TPR_1,HMMSmart_SM00671,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
IRF8	3394	genome.wustl.edu	37	16	85954813	85954813	+	Silent	SNP	C	C	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	16	85954813	85954813	C	G	SNP	IRF8	NM_002163.2	human	genbank	58_37c	+1	reviewed	silent	c.1206	p.V402	1.000	superfamily_SMAD_FHA	HMMPfam_IRF,HMMSmart_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3,PatternScan_IRF,superfamily_SSF46785	-	no_errors
KIAA0146	23514	genome.wustl.edu	37	8	48614556	48614556	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	8	48614556	48614556	G	T	SNP	KIAA0146	NM_001080394.1	human	genbank	58_37c	+1	predicted	silent	c.1956	p.T652	0.422	NULL	NULL	-	no_errors
KIAA0467	23334	genome.wustl.edu	37	1	43908878	43908878	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	43908878	43908878	G	C	SNP	KIAA0467	NM_015284.2	human	genbank	58_37c	+1	predicted	missense	c.5742	p.K1914N	1.000	NULL	NULL	-	no_errors
LOC100131261	0	genome.wustl.edu	37	1	118320960	118320960	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	118320960	118320960	G	T	SNP	LOC100131261	XM_001720964.1	human	genbank	58_37c	-1	model	missense	c.169	p.Q57K	1.000	NULL	NULL	-	no_errors
LOC100288795	0	genome.wustl.edu	37	17	4544978	4544979	+	In_Frame_Ins	INS	-	-	TGA	rs59278259	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	17	4544978	4544979	-	TGA	INS	LOC100288795	XM_002343502.1	human	genbank	58_37c	+1	model	in_frame_ins	c.890_891	p.299in_frame_insE	0.000:0.000	NULL	NULL	-	no_errors
MGMT	4255	genome.wustl.edu	37	10	131565072	131565072	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	10	131565072	131565072	C	A	SNP	MGMT	NM_002412.3	human	genbank	58_37c	+1	validated	nonsense	c.528	p.C176*	1.000	PatternScan_MGMT,HMMPfam_DNA_binding_1,superfamily_MethylDNA_cys_mtrans_DNA_bd	PatternScan_THIOL_PROTEASE_HIS,PatternScan_MGMT,HMMPfam_Methyltransf_1N,HMMPfam_DNA_binding_1,superfamily_MethylDNA_cys_mtrans_DNA_bd,superfamily_SSF53155	-	no_errors
ODZ4	26011	genome.wustl.edu	37	11	78399254	78399254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	11	78399254	78399254	C	T	SNP	ODZ4	NM_001098816.2	human	genbank	58_37c	-1	validated	missense	c.5105	p.R1702H	1.000	HMMPfam_RHS_repeat,superfamily_TolB_C	HMMPfam_NHL,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_TolB_C,superfamily_SSF57196	-	no_errors
OR4C12	283093	genome.wustl.edu	37	11	50003441	50003441	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	11	50003441	50003441	C	T	SNP	OR4C12	NM_001005270.2	human	genbank	58_37c	-1	validated	silent	c.597	p.V199	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PPP1R9A	55607	genome.wustl.edu	37	7	94855425	94855425	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	7	94855425	94855425	A	G	SNP	PPP1R9A	NM_017650.2	human	genbank	58_37c	+1	validated	silent	c.2043	p.K681	1.000	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00454,superfamily_SAM/Pointed domain,HMMPfam_SAM_2	-	no_errors
PRDM14	63978	genome.wustl.edu	37	8	70971077	70971078	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	8	70971077	70971078	-	G	INS	PRDM14	NM_024504.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.1184_1185	p.E395fs	1.000:1.000	NULL	HMMSmart_SET,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667,superfamily_SSF82199	-	no_errors
PRSS35	167681	genome.wustl.edu	37	6	84234145	84234145	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	6	84234145	84234145	G	A	SNP	PRSS35	NM_153362.2	human	genbank	58_37c	+1	validated	missense	c.985	p.D329N	0.998	HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
PRUNE	58497	genome.wustl.edu	37	1	150999720	150999720	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	150999720	150999720	G	A	SNP	PRUNE	NM_021222.1	human	genbank	58_37c	+1	provisional	missense	c.691	p.E231K	1.000	HMMPfam_DHHA2,superfamily_DHH phosphoesterases	HMMPfam_DHH,HMMPfam_DHHA2,PatternScan_GLYCOSYL_HYDROL_F5,superfamily_DHH phosphoesterases	-	no_errors
SLC28A3	64078	genome.wustl.edu	37	9	86909149	86909149	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	9	86909149	86909149	C	T	SNP	SLC28A3	NM_022127.1	human	genbank	58_37c	-1	provisional	missense	c.903	p.M301I	1.000	HMMPfam_Gate	HMMPfam_Nucleos_tra2_N,HMMPfam_Gate,HMMPfam_Nucleos_tra2_C	-	no_errors
SLTM	79811	genome.wustl.edu	37	15	59205704	59205704	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	15	59205704	59205704	T	A	SNP	SLTM	NM_024755.2	human	genbank	58_37c	-1	validated	missense	c.507	p.E169D	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,HMMPfam_SAP,HMMSmart_SAP,superfamily_SSF54928,superfamily_SSF68906	-	no_errors
SMNDC1	10285	genome.wustl.edu	37	10	112057441	112057441	+	Silent	SNP	G	G	A	rs150361329	byCluster;by1000genomes	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	10	112057441	112057441	G	A	SNP	SMNDC1	NM_005871.3	human	genbank	58_37c	-1	reviewed	silent	c.309	p.T103	0.956	HMMSmart_TUDOR,HMMPfam_SMN,superfamily_SSF63748	HMMSmart_TUDOR,HMMPfam_SMN,superfamily_SSF63748	-	no_errors
SPTA1	6708	genome.wustl.edu	37	1	158589080	158589080	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	158589080	158589080	C	A	SNP	SPTA1	NM_003126.2	human	genbank	58_37c	-1	reviewed	missense	c.6462	p.K2154N	1.000	superfamily_Spectrin repeat	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Spectrin,HMMPfam_efhand_Ca_insen,HMMSmart_SM00150,superfamily_Spectrin repeat,superfamily_EF-hand	-	no_errors
SYDE1	85360	genome.wustl.edu	37	19	15222237	15222237	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	15222237	15222237	C	G	SNP	SYDE1	NM_033025.4	human	genbank	58_37c	+1	provisional	missense	c.1404	p.I468M	1.000	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
THBS4	7060	genome.wustl.edu	37	5	79366973	79366973	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	5	79366973	79366973	G	A	SNP	THBS4	NM_003248.4	human	genbank	58_37c	+1	reviewed	missense	c.1690	p.D564N	1.000	HMMPfam_TSP_3,superfamily_SSF103647	HMMSmart_EGF_CA,HMMSmart_TSPN,HMMPfam_TSP_3,HMMSmart_EGF,HMMPfam_TSP_C,superfamily_ConA_like_lec_gl,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF103647,superfamily_SSF57196	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578239	7578239	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	17	7578239	7578239	C	-	DEL	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.610	p.E204fs	0.045	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TTYH1	57348	genome.wustl.edu	37	19	54946801	54946801	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	54946801	54946801	C	T	SNP	TTYH1	NM_001005367.1	human	genbank	58_37c	+1	reviewed	missense	c.1205	p.S402F	0.993	HMMPfam_Tweety	HMMPfam_Tweety	-	no_errors
WFIKKN2	124857	genome.wustl.edu	37	17	48918012	48918012	+	Missense_Mutation	SNP	G	G	A	rs150663986	byCluster;byFrequency;by1000genomes	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	17	48918012	48918012	G	A	SNP	WFIKKN2	NM_175575.5	human	genbank	58_37c	+1	reviewed	missense	c.1363	p.V455I	0.996	superfamily_TIMP_like	HMMPfam_Kunitz_BPTI,HMMSmart_KU,PatternScan_BPTI_KUNITZ_1,superfamily_Prot_inh_Kunz-m,HMMSmart_KAZAL,PatternScan_KAZAL,HMMSmart_IGc2,HMMPfam_WAP,HMMSmart_WAP,superfamily_WAP,superfamily_TIMP_like,HMMPfam_Kazal_2,HMMPfam_I-set,PatternScan_4_DISULFIDE_CORE,superfamily_SSF100895,superfamily_SSF48726	-	no_errors
YY1AP1	55249	genome.wustl.edu	37	1	155646348	155646348	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	1	155646348	155646348	C	G	SNP	YY1AP1	NM_139118.1	human	genbank	58_37c	-1	reviewed	missense	c.513	p.Q171H	1.000	NULL	NULL	-	no_errors
ZCCHC2	54877	genome.wustl.edu	37	18	60242018	60242018	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	18	60242018	60242018	C	G	SNP	ZCCHC2	NM_017742.4	human	genbank	58_37c	+1	validated	missense	c.2704	p.L902V	1.000	NULL	superfamily_PX,HMMPfam_zf-CCHC,HMMSmart_ZnF_C2HC	-	no_errors
ZNF22	7570	genome.wustl.edu	37	10	45499229	45499229	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	10	45499229	45499229	C	T	SNP	ZNF22	NM_006963.4	human	genbank	58_37c	+1	validated	missense	c.413	p.P138L	0.998	superfamily_C2H2 and C2HC zinc fingers	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF689	115509	genome.wustl.edu	37	16	30615937	30615937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	16	30615937	30615937	C	T	SNP	ZNF689	NM_138447.1	human	genbank	58_37c	-1	provisional	missense	c.1151	p.R384Q	1.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF77	58492	genome.wustl.edu	37	19	2933696	2933696	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CM-01A-31W-A050-09	TCGA-A2-A0CM-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe8023d4-5476-4c58-bf70-cbf65cdd4327	be44d49f-6519-4d7c-a1ba-577c7b365a37	19	2933696	2933696	G	C	SNP	ZNF77	NM_021217.2	human	genbank	58_37c	-1	validated	missense	c.1429	p.Q477E	0.000	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
