Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AWAT2	158835	genome.wustl.edu	37	X	69262054	69262054	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	69262054	69262054	C	T	SNP	AWAT2	NM_001002254.1	human	genbank	58_37c	-1	reviewed	missense	c.830	p.R277Q	0.002	HMMPfam_DAGAT	HMMPfam_DAGAT	-	no_errors
BAHCC1	57597	genome.wustl.edu	37	17	79412530	79412530	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	79412530	79412530	C	-	DEL	BAHCC1	ENST00000436173	human	ensembl	58_37c	+1	known	frame_shift_del	c.2986	p.P996fs	0.956	NULL	HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
BTN3A2	11118	genome.wustl.edu	37	6	26368860	26368860	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	26368860	26368860	C	T	SNP	BTN3A2	NM_007047.3	human	genbank	58_37c	+1	reviewed	silent	c.153	p.P51	0.681	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
C2orf63	130162	genome.wustl.edu	37	2	55408757	55408757	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	2	55408757	55408757	C	A	SNP	C2orf63	NM_152385.2	human	genbank	58_37c	-1	validated	missense	c.1130	p.G377V	0.990	superfamily_ARM repeat	superfamily_ARM repeat	-	no_errors
CHGA	1113	genome.wustl.edu	37	14	93397759	93397761	+	In_Frame_Del	DEL	GAG	GAG	-	rs145227561	by1000genomes	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GAG	GAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	14	93397759	93397761	GAG	-	DEL	CHGA	NM_001275.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.520_522	p.E177in_frame_del	0.168:0.190:0.200	HMMPfam_Granin	HMMPfam_Granin,PatternScan_GRANINS_1,PatternScan_GRANINS_2	-	no_errors
CMIP	80790	genome.wustl.edu	37	16	81739192	81739193	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	81739192	81739193	GC	-	DEL	CMIP	NM_198390.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.2180_2181	p.G727fs	1.000:0.909	superfamily_RNI-like	PatternScan_WD_REPEATS_1,superfamily_PH domain-like,superfamily_RNI-like	-	no_errors
ENSG00000222088	0	genome.wustl.edu	37	Y	10037883	10037883	+	RNA	SNP	G	G	A	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	Y	10037883	10037883	G	A	SNP	ENSG00000251705	ENST00000515896	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	1.000	-	-	-	no_errors
ENSG00000234719	0	genome.wustl.edu	37	16	12021296	12021298	+	In_Frame_Del	DEL	TGG	TGG	-	rs60347225	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	TGG	TGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	16	12021296	12021298	TGG	-	DEL	ENSG00000234719	ENST00000399147	human	ensembl	58_37c	-1	known	in_frame_del	c.1077_1075	p.P359in_frame_del	0.017:0.018:0.018	NULL	HMMPfam_NPIP	-	no_errors
GAPVD1	26130	genome.wustl.edu	37	9	128117999	128117999	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	9	128117999	128117999	G	A	SNP	GAPVD1	ENST00000438537	human	ensembl	58_37c	+1	known	nonsense	c.11	p.W4*	1.000	NULL	HMMPfam_VPS9,HMMSmart_VPS9,superfamily_SSF109993	-	no_errors
KRTAP4-9	85286	genome.wustl.edu	37	17	39262140	39262140	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	17	39262140	39262140	C	A	SNP	KRTAP4-9	XM_002343553.1	human	genbank	58_37c	+1	model	missense	c.481	p.P161T	0.896	NULL	NULL	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56170973	56170973	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	5	56170973	56170973	G	T	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	nonsense	c.1801	p.E601*	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
METTL7A	25840	genome.wustl.edu	37	12	51323842	51323842	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	12	51323842	51323842	C	T	SNP	METTL7A	NM_014033.3	human	genbank	58_37c	+1	validated	missense	c.644	p.A215V	0.791	superfamily_SSF53335	HMMPfam_Methyltransf_11,superfamily_SSF53335	-	no_errors
MRFAP1L1	114932	genome.wustl.edu	37	4	6711224	6711224	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	4	6711224	6711224	C	T	SNP	MRFAP1L1	NM_203462.2	human	genbank	58_37c	-1	validated	missense	c.133	p.E45K	0.245	NULL	NULL	-	no_errors
MSL3	10943	genome.wustl.edu	37	X	11783689	11783689	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	X	11783689	11783689	C	T	SNP	MSL3	NM_078629.2	human	genbank	58_37c	+1	reviewed	missense	c.1012	p.R338C	1.000	HMMPfam_MRG	HMMSmart_SM00298,HMMPfam_MRG	-	no_errors
MYRIP	25924	genome.wustl.edu	37	3	40275393	40275393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	40275393	40275393	T	C	SNP	MYRIP	NM_015460.2	human	genbank	58_37c	+1	validated	missense	c.1949	p.L650P	1.000	NULL	HMMPfam_MOBP,superfamily_FYVE_PHD_ZnF	-	no_errors
NID1	4811	genome.wustl.edu	37	1	236201470	236201470	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	1	236201470	236201470	C	T	SNP	NID1	NM_002508.2	human	genbank	58_37c	-1	reviewed	missense	c.1219	p.A407T	0.000	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00179,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
PCIF1	63935	genome.wustl.edu	37	20	44575922	44575922	+	Silent	SNP	G	G	A	rs35585146	byCluster;byFrequency	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	20	44575922	44575922	G	A	SNP	PCIF1	NM_022104.3	human	genbank	58_37c	+1	validated	silent	c.1728	p.P576	0.001	NULL	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP	-	no_errors
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	178952085	178952085	A	G	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.3140	p.H1047R	1.000	HMMSmart_PI3Kc,superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178938934	178938934	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	3	178938934	178938934	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.2176	p.E726K	1.000	superfamily_Kinase_like	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
POLR1C	9533	genome.wustl.edu	37	6	43484915	43484915	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	6	43484915	43484915	A	G	SNP	POLR1C	NM_203290.1	human	genbank	58_37c	+1	validated	missense	c.68	p.N23S	1.000	NULL	PatternScan_RNA_POL_D_30KD,superfamily_RBP11-like subunits of RNA polymerase,HMMPfam_RNA_pol_L,HMMPfam_RNA_pol_A_bac,superfamily_Insert subdomain of RNA polymerase alpha subunit,HMMSmart_SM00662	-	no_errors
SNTG1	54212	genome.wustl.edu	37	8	51449300	51449300	+	Silent	SNP	C	C	T	rs35419988	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	8	51449300	51449300	C	T	SNP	SNTG1	NM_018967.2	human	genbank	58_37c	+1	reviewed	silent	c.612	p.C204	1.000	HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
TUBA3C	7278	genome.wustl.edu	37	13	19752393	19752393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CP-01A-11W-A050-09	TCGA-A2-A0CP-10A-01W-A055-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	a776e274-fe9f-49a9-83ab-95ca6819c96b	a1bb0524-fef9-405d-8e55-4c8ab74efb16	13	19752393	19752393	C	T	SNP	TUBA3C	NM_006001.1	human	genbank	58_37c	-1	reviewed	missense	c.368	p.R123H	1.000	HMMPfam_Tubulin,superfamily_Tubulin nucleotide-binding domain-like	HMMPfam_Tubulin,superfamily_Tubulin C-terminal domain-like,PatternScan_TUBULIN,HMMPfam_Tubulin_C,superfamily_Tubulin nucleotide-binding domain-like	-	no_errors
