Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCB1	5243	genome.wustl.edu	37	7	87135240	87135240	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	7	87135240	87135240	C	T	SNP	ABCB1	NM_000927.3	human	genbank	58_37c	-1	reviewed	silent	c.3609	p.T1203	0.799	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ABCF1	23	genome.wustl.edu	37	6	30558385	30558385	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	30558385	30558385	G	C	SNP	ABCF1	NM_001025091.1	human	genbank	58_37c	+1	reviewed	missense	c.2445	p.Q815H	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_tran,HMMSmart_SM00382,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ADCY7	113	genome.wustl.edu	37	16	50324435	50324435	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	50324435	50324435	C	G	SNP	ADCY7	NM_001114.3	human	genbank	58_37c	+1	reviewed	missense	c.239	p.S80C	0.985	NULL	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase,HMMPfam_DUF1053,PatternScan_GUANYLATE_CYCLASE_1	-	no_errors
ALDH1L2	160428	genome.wustl.edu	37	12	105456678	105456678	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	105456678	105456678	G	A	SNP	ALDH1L2	NM_001034173.3	human	genbank	58_37c	-1	reviewed	silent	c.909	p.N303	1.000	HMMPfam_Formyl_trans_C,superfamily_FMT C-terminal domain-like	PatternScan_GART,HMMPfam_Formyl_trans_N,superfamily_Formyltransferase,HMMPfam_Formyl_trans_C,PatternScan_PHOSPHOPANTETHEINE,superfamily_FMT C-terminal domain-like,HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_ALDH-like	-	no_errors
ANK2	287	genome.wustl.edu	37	4	114238897	114238897	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	114238897	114238897	C	G	SNP	ANK2	NM_001148.4	human	genbank	58_37c	+1	reviewed	missense	c.2728	p.L910V	1.000	NULL	HMMPfam_Death,HMMSmart_DEATH,HMMPfam_ZU5,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK,superfamily_DEATH_like,PatternScan_ALDEHYDE_DEHYDR_GLU	-	no_errors
ASPM	259266	genome.wustl.edu	37	1	197111819	197111819	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	197111819	197111819	G	T	SNP	ASPM	NM_018136.4	human	genbank	58_37c	-1	reviewed	silent	c.1563	p.L521	0.805	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ATAD2	29028	genome.wustl.edu	37	8	124340530	124340530	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	8	124340530	124340530	C	T	SNP	ATAD2	NM_014109.3	human	genbank	58_37c	-1	reviewed	silent	c.3768	p.R1256	0.000	NULL	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
BTNL3	10917	genome.wustl.edu	37	5	180420100	180420100	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	180420100	180420100	G	A	SNP	BTNL3	NM_197975.1	human	genbank	58_37c	+1	validated	missense	c.337	p.G113R	0.000	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726	HMMSmart_IG,HMMPfam_SPRY,HMMSmart_PRY,HMMPfam_V-set,HMMSmart_SPRY,superfamily_SSF48726	-	no_errors
C20orf46	55321	genome.wustl.edu	37	20	1161624	1161624	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	20	1161624	1161624	G	A	SNP	C20orf46	NM_018354.1	human	genbank	58_37c	-1	provisional	silent	c.639	p.G213	1.000	NULL	NULL	-	no_errors
C3orf34	84984	genome.wustl.edu	37	3	196434580	196434580	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	3	196434580	196434580	C	A	SNP	C3orf34	NM_032898.3	human	genbank	58_37c	-1	validated	nonsense	c.346	p.E116*	1.000	NULL	NULL	-	no_errors
C4orf40	401137	genome.wustl.edu	37	4	71021774	71021774	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	71021774	71021774	C	T	SNP	C4orf40	NM_214711.3	human	genbank	58_37c	+1	validated	missense	c.55	p.R19W	0.004	NULL	NULL	-	no_errors
CCDC40	55036	genome.wustl.edu	37	17	78055837	78055837	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	78055837	78055837	C	A	SNP	CCDC40	NM_017950.2	human	genbank	58_37c	+1	validated	missense	c.1969	p.Q657K	0.997	NULL	HMMPfam_BRE1	-	no_errors
CDH2	1000	genome.wustl.edu	37	18	25565518	25565518	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	18	25565518	25565518	C	G	SNP	CDH2	NM_001792.3	human	genbank	58_37c	-1	reviewed	missense	c.1949	p.R650T	1.000	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CDYL	9425	genome.wustl.edu	37	6	4943943	4943943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	4943943	4943943	G	A	SNP	CDYL	NM_004824.3	human	genbank	58_37c	+1	reviewed	missense	c.1285	p.D429N	1.000	HMMPfam_ECH,superfamily_SSF52096	HMMPfam_Chromo,HMMSmart_CHROMO,PatternScan_CHROMO_1,HMMPfam_ECH,superfamily_Chromodomain-like,superfamily_SSF52096	-	no_errors
CLASP2	23122	genome.wustl.edu	37	3	33644558	33644558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	3	33644558	33644558	C	T	SNP	CLASP2	NM_015097.1	human	genbank	58_37c	-1	validated	missense	c.1810	p.D604N	1.000	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
CNGA3	1261	genome.wustl.edu	37	2	99013495	99013495	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	2	99013495	99013495	C	T	SNP	CNGA3	NM_001298.2	human	genbank	58_37c	+1	reviewed	missense	c.1862	p.A621V	0.088	NULL	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
CYP2S1	29785	genome.wustl.edu	37	19	41703775	41703775	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	41703775	41703775	C	T	SNP	CYP2S1	NM_030622.6	human	genbank	58_37c	+1	reviewed	silent	c.435	p.G145	0.090	HMMPfam_p450,superfamily_Cytochrome P450	HMMPfam_p450,superfamily_Cytochrome P450,PatternScan_CYTOCHROME_P450	-	no_errors
DDX11L8	0	genome.wustl.edu	37	12	9453797	9453797	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	9453797	9453797	C	A	SNP	DDX11L8	ENST00000341155	human	ensembl	58_37c	+1	known	silent	c.1203	p.I401	0.525	HMMSmart_SM00488,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00488,HMMSmart_SM00491,HMMPfam_DEAD_2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
EFCAB5	374786	genome.wustl.edu	37	17	28380797	28380797	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	28380797	28380797	C	T	SNP	EFCAB5	NM_198529.3	human	genbank	58_37c	+1	validated	missense	c.1825	p.R609C	0.000	superfamily_EF-hand	PatternScan_EF_HAND_1,superfamily_EF-hand	-	no_errors
ENSG00000247257	0	genome.wustl.edu	37	7	138731999	138731999	+	RNA	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	7	138731999	138731999	C	T	SNP	ZC3HAV1	NM_020119.3	human	genbank	58_37c	-1	reviewed	3_prime_untranslated_region	c.*341	NULL	0.000	-	-	-	no_errors
EXT1	2131	genome.wustl.edu	37	8	119122505	119122505	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	8	119122505	119122505	T	C	SNP	EXT1	NM_000127.2	human	genbank	58_37c	-1	reviewed	missense	c.781	p.K261E	1.000	HMMPfam_Exostosin	HMMPfam_Exostosin,HMMPfam_Glyco_transf_64,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
FBXO22	26263	genome.wustl.edu	37	15	76196845	76196845	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	15	76196845	76196845	T	C	SNP	FBXO22	NM_147188.1	human	genbank	58_37c	+1	reviewed	missense	c.154	p.W52R	0.992	HMMPfam_F-box,superfamily_F-box domain	HMMPfam_F-box,HMMPfam_FIST_C,superfamily_F-box domain	-	no_errors
FLNB	2317	genome.wustl.edu	37	3	58135903	58135904	+	In_Frame_Ins	INS	-	-	CGT	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	-	-	-	CGT	-	-	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	3	58135903	58135904	-	CGT	INS	FLNB	NM_001457.3	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.6316_6317	p.2108in_frame_insS	1.000:1.000	HMMSmart_IG_FLMN,superfamily_Ig_E-set	HMMSmart_IG_FLMN,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,superfamily_Ig_E-set,superfamily_Calponin-homology,HMMPfam_Filamin	-	no_errors
FRYL	285527	genome.wustl.edu	37	4	48636482	48636482	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	48636482	48636482	A	G	SNP	FRYL	ENST00000505759	human	ensembl	58_37c	-1	known	silent	c.222	p.N74	1.000	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region
GPR97	222487	genome.wustl.edu	37	16	57714456	57714456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	57714456	57714456	C	T	SNP	GPR97	NM_170776.4	human	genbank	58_37c	+1	validated	missense	c.808	p.R270C	0.144	HMMPfam_7tm_2	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,PatternScan_G_PROTEIN_RECEP_F2_1,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
GRK4	2868	genome.wustl.edu	37	4	3039136	3039136	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	3039136	3039136	C	G	SNP	GRK4	NM_182982.2	human	genbank	58_37c	+1	reviewed	missense	c.1443	p.I481M	0.198	HMMSmart_SM00133	HMMPfam_RGS,HMMSmart_SM00315,HMMSmart_SM00133,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),superfamily_Regulator of G-protein signaling RGS,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
HCN4	10021	genome.wustl.edu	37	15	73621931	73621931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	15	73621931	73621931	G	A	SNP	HCN4	NM_005477.2	human	genbank	58_37c	-1	reviewed	missense	c.1573	p.R525C	1.000	superfamily_cNMP_binding,superfamily_SSF81324	HMMPfam_cNMP_binding,HMMSmart_cNMP,HMMPfam_Ion_trans,HMMPfam_Ion_trans_N,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding,superfamily_SSF81324	-	no_errors
HIST1H2AK	8330	genome.wustl.edu	37	6	27806113	27806113	+	Missense_Mutation	SNP	G	G	A	rs188027160	by1000genomes	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	27806113	27806113	G	A	SNP	HIST1H2AK	NM_003510.2	human	genbank	58_37c	-1	reviewed	missense	c.5	p.S2L	0.992	superfamily_Histone-fold	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
IL17RC	84818	genome.wustl.edu	37	3	9974335	9974335	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	3	9974335	9974335	C	T	SNP	IL17RC	NM_153461.2	human	genbank	58_37c	+1	reviewed	silent	c.1644	p.L548	0.016	NULL	HMMPfam_SEFIR	-	no_errors
INPP5F	22876	genome.wustl.edu	37	10	121583335	121583335	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	10	121583335	121583335	C	T	SNP	INPP5F	NM_014937.2	human	genbank	58_37c	+1	reviewed	nonsense	c.2170	p.Q724*	1.000	NULL	HMMPfam_Syja_N	-	no_errors
ITK	3702	genome.wustl.edu	37	5	156638350	156638350	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	156638350	156638350	G	A	SNP	ITK	NM_005546.3	human	genbank	58_37c	+1	reviewed	missense	c.296	p.R99Q	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_BTK,HMMSmart_SM00107,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors
KIAA1468	57614	genome.wustl.edu	37	18	59854856	59854856	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	18	59854856	59854856	C	A	SNP	KIAA1468	NM_020854.3	human	genbank	58_37c	+1	validated	silent	c.118	p.R40	0.998	NULL	HMMPfam_HEAT,HMMSmart_SM00667,superfamily_ARM repeat	-	no_errors
KIF11	3832	genome.wustl.edu	37	10	94393475	94393475	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	10	94393475	94393475	G	T	SNP	KIF11	NM_004523.3	human	genbank	58_37c	+1	reviewed	missense	c.1798	p.V600F	0.331	NULL	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KRT1	3848	genome.wustl.edu	37	12	53069105	53069105	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	53069105	53069105	C	T	SNP	KRT1	NM_006121.3	human	genbank	58_37c	-1	reviewed	missense	c.1807	p.G603S	0.008	NULL	superfamily_Prefoldin,HMMPfam_Filament,PatternScan_IF	-	no_errors
LARS	51520	genome.wustl.edu	37	5	145537087	145537087	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	145537087	145537087	C	T	SNP	LARS	NM_020117.9	human	genbank	58_37c	-1	reviewed	missense	c.944	p.G315E	0.995	superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Nucleotidylyl transferase	PatternScan_AA_TRNA_LIGASE_I,superfamily_ValRS/IleRS/LeuRS editing domain,superfamily_Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases,HMMPfam_Anticodon_1,HMMPfam_tRNA-synt_1g,superfamily_Nucleotidylyl transferase	-	no_errors
LOC100287127	0	genome.wustl.edu	37	11	47603972	47603972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	11	47603972	47603972	C	T	SNP	LOC100287127	XM_002343059.1	human	genbank	58_37c	-1	model	missense	c.236	p.R79Q	0.998	NULL	NULL	-	no_errors
LOC100287484	0	genome.wustl.edu	37	11	49878979	49878979	+	Missense_Mutation	SNP	G	A	A	rs7482269	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	11	49878979	49878979	G	A	SNP	LOC100287484	XM_002343064.1	human	genbank	58_37c	+1	model	missense	c.1210	p.A404T	0.000	NULL	NULL	-	no_errors
LOC100289173	0	genome.wustl.edu	37	6	12514663	12514663	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	12514663	12514663	C	T	SNP	LOC100289173	XM_002342615.1	human	genbank	58_37c	-1	model	silent	c.213	p.A71	1.000	NULL	NULL	-	no_errors
LOC392264	392264	genome.wustl.edu	37	8	120492271	120492271	+	RNA	SNP	C	C	A	rs113201173	by1000genomes	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	8	120492271	120492271	C	A	SNP	LOC392264	XR_016686.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.165	-	-	-	pseudogene
LRRIQ3	127255	genome.wustl.edu	37	1	74507579	74507579	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	74507579	74507579	C	A	SNP	LRRIQ3	NM_001105659.1	human	genbank	58_37c	-1	provisional	missense	c.1036	p.D346Y	0.013	NULL	HMMPfam_LRR_1,superfamily_Outer arm dynein light chain 1	-	no_errors
LTBP2	4053	genome.wustl.edu	37	14	74972768	74972768	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	14	74972768	74972768	C	T	SNP	LTBP2	NM_000428.2	human	genbank	58_37c	-1	reviewed	missense	c.4160	p.R1387H	0.994	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_TB,superfamily_TB module/8-cys domain,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Growth factor receptor domain,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
LYN	4067	genome.wustl.edu	37	8	56864664	56864664	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	8	56864664	56864664	A	T	SNP	LYN	NM_002350.2	human	genbank	58_37c	+1	validated	missense	c.627	p.K209N	0.913	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,superfamily_SH2 domain	-	no_errors
LYST	1130	genome.wustl.edu	37	1	235969153	235969153	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	235969153	235969153	C	T	SNP	LYST	NM_000081.2	human	genbank	58_37c	-1	reviewed	missense	c.3283	p.E1095K	0.998	NULL	HMMPfam_Beach,superfamily_BEACH domain,PatternScan_COPPER_BLUE,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,superfamily_PH domain-like	-	no_errors
MCRS1	10445	genome.wustl.edu	37	12	49953743	49953743	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	49953743	49953743	G	C	SNP	MCRS1	NM_001012300.1	human	genbank	58_37c	-1	validated	missense	c.928	p.R310G	1.000	NULL	HMMPfam_FHA,HMMSmart_FHA,superfamily_SMAD_FHA	-	no_errors
MLL2	8085	genome.wustl.edu	37	12	49427728	49427728	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	49427728	49427728	T	A	SNP	MLL2	NM_003482.3	human	genbank	58_37c	-1	validated	missense	c.10760	p.E3587V	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MYH10	4628	genome.wustl.edu	37	17	8424562	8424562	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	8424562	8424562	C	T	SNP	MYH10	NM_005964.1	human	genbank	58_37c	-1	validated	missense	c.1906	p.E636K	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Myosin S1 fragment N-terminal domain,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYH11	4629	genome.wustl.edu	37	16	15818522	15818522	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	15818522	15818522	G	C	SNP	MYH11	NM_001040114.1	human	genbank	58_37c	-1	reviewed	missense	c.4119	p.I1373M	1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
MYH6	4624	genome.wustl.edu	37	14	23874854	23874854	+	Silent	SNP	G	G	A	rs147148031	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	14	23874854	23874854	G	A	SNP	MYH6	NM_002471.3	human	genbank	58_37c	-1	validated	silent	c.327	p.Y109	0.996	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NUDT5	11164	genome.wustl.edu	37	10	12215795	12215795	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	10	12215795	12215795	C	T	SNP	NUDT5	NM_014142.2	human	genbank	58_37c	-1	validated	missense	c.307	p.E103K	0.998	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX	HMMPfam_NUDIX,superfamily_Nudix,PatternScan_NUDIX	-	no_errors
NXN	64359	genome.wustl.edu	37	17	729229	729229	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	729229	729229	C	T	SNP	NXN	NM_022463.3	human	genbank	58_37c	-1	validated	silent	c.450	p.G150	0.961	superfamily_Thioredoxin-like	HMMPfam_AhpC-TSA,superfamily_Thioredoxin-like	-	no_errors
OR10A6	390093	genome.wustl.edu	37	11	7949711	7949711	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	11	7949711	7949711	G	A	SNP	OR10A6	NM_001004461.1	human	genbank	58_37c	-1	provisional	missense	c.499	p.P167S	0.457	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OR2Z1	284383	genome.wustl.edu	37	19	8841768	8841768	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	8841768	8841768	G	T	SNP	OR2Z1	NM_001004699.1	human	genbank	58_37c	+1	provisional	silent	c.378	p.V126	1.000	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PCDHA4	56144	genome.wustl.edu	37	5	140188814	140188814	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	140188814	140188814	G	A	SNP	PCDHA4	NM_018907.2	human	genbank	58_37c	+1	reviewed	missense	c.2042	p.R681Q	0.016	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PCDHGB4	8641	genome.wustl.edu	37	5	140768708	140768708	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	140768708	140768708	C	T	SNP	PCDHGB4	NM_003736.2	human	genbank	58_37c	+1	reviewed	silent	c.1257	p.T419	0.002	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PKHD1L1	93035	genome.wustl.edu	37	8	110499005	110499005	+	Missense_Mutation	SNP	C	C	T	rs189682035	by1000genomes	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	8	110499005	110499005	C	T	SNP	PKHD1L1	NM_177531.4	human	genbank	58_37c	+1	validated	missense	c.9835	p.R3279C	1.000	superfamily_Pectin lyase-like	HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00710,superfamily_Cupredoxins,superfamily_Pectin lyase-like,HMMSmart_SM00758,superfamily_E set domains,HMMPfam_G8,superfamily_Anthrax protective antigen	-	no_errors
RCBTB2	1102	genome.wustl.edu	37	13	49075943	49075943	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	13	49075943	49075943	A	T	SNP	RCBTB2	NM_001268.2	human	genbank	58_37c	-1	reviewed	silent	c.1179	p.T393	0.682	superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,HMMPfam_RCC1,PatternScan_RCC1_2,superfamily_RCC1/BLIP-II,superfamily_POZ domain,HMMPfam_BTB	-	no_errors
SERPINA10	51156	genome.wustl.edu	37	14	94756847	94756847	+	Silent	SNP	C	T	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	14	94756847	94756847	C	T	SNP	SERPINA10	NM_001100607.1	human	genbank	58_37c	-1	reviewed	silent	c.84	p.S28	0.000	superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SETX	23064	genome.wustl.edu	37	9	135140193	135140195	+	In_Frame_Del	DEL	ACC	ACC	-	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	ACC	ACC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	9	135140193	135140195	ACC	-	DEL	SETX	NM_015046.5	human	genbank	58_37c	-1	reviewed	in_frame_del	c.7467_7465	p.G2489in_frame_del	0.051:0.066:0.043	NULL	superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SIPA1L2	57568	genome.wustl.edu	37	1	232561348	232561348	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	232561348	232561348	C	T	SNP	SIPA1L2	NM_020808.3	human	genbank	58_37c	-1	validated	missense	c.4617	p.M1539I	1.000	NULL	HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
SLC25A13	10165	genome.wustl.edu	37	7	95822392	95822392	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	7	95822392	95822392	C	T	SNP	SLC25A13	NM_014251.2	human	genbank	58_37c	-1	reviewed	missense	c.572	p.R191H	1.000	superfamily_SSF47473	superfamily_Mitoch_carrier,HMMSmart_EFh,HMMPfam_Mito_carr,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
SLC2A1	6513	genome.wustl.edu	37	1	43393369	43393369	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	43393369	43393369	G	A	SNP	SLC2A1	NM_006516.2	human	genbank	58_37c	-1	reviewed	silent	c.1185	p.F395	1.000	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter	HMMPfam_Sugar_tr,PatternScan_SUGAR_TRANSPORT_1,PatternScan_SUGAR_TRANSPORT_2,superfamily_MFS_gen_substrate_transporter	-	no_errors
ST6GALNAC1	55808	genome.wustl.edu	37	17	74623542	74623542	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	17	74623542	74623542	C	G	SNP	ST6GALNAC1	NM_018414.3	human	genbank	58_37c	-1	validated	missense	c.955	p.E319Q	1.000	HMMPfam_Glyco_transf_29	HMMPfam_Glyco_transf_29	-	no_errors
SYCP2	10388	genome.wustl.edu	37	20	58467646	58467646	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	20	58467646	58467646	G	A	SNP	SYCP2	NM_014258.2	human	genbank	58_37c	-1	reviewed	missense	c.1904	p.S635L	0.024	NULL	NULL	-	no_errors
TAP1	6890	genome.wustl.edu	37	6	32813449	32813449	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	32813449	32813449	G	A	SNP	TAP1	NM_000593.5	human	genbank	58_37c	-1	reviewed	silent	c.2334	p.G778	0.054	HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_SSF52540	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_AAA,superfamily_ABC_TM_1,PatternScan_ABC_TRANSPORTER_1,superfamily_SSF52540	-	no_errors
TBCC	6903	genome.wustl.edu	37	6	42713573	42713573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	42713573	42713573	G	A	SNP	TBCC	NM_003192.2	human	genbank	58_37c	-1	reviewed	missense	c.239	p.S80L	0.301	NULL	HMMSmart_SM00673,HMMPfam_TBCC	-	no_errors
TBL1X	6907	genome.wustl.edu	37	X	9683009	9683009	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	X	9683009	9683009	G	T	SNP	TBL1X	NM_001139466.1	human	genbank	58_37c	+1	reviewed	missense	c.1673	p.G558V	0.998	HMMSmart_SM00320,superfamily_WD40 repeat-like	HMMSmart_SM00320,HMMSmart_SM00667,superfamily_WD40 repeat-like,HMMPfam_LisH,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TBL3	10607	genome.wustl.edu	37	16	2024405	2024405	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	2024405	2024405	A	G	SNP	TBL3	NM_006453.2	human	genbank	58_37c	+1	reviewed	missense	c.218	p.D73G	0.955	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_Utp13,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
TBX18	9096	genome.wustl.edu	37	6	85448266	85448266	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	85448266	85448266	G	T	SNP	TBX18	NM_001080508.1	human	genbank	58_37c	-1	provisional	missense	c.1048	p.P350T	1.000	NULL	HMMPfam_T-box,HMMSmart_TBOX,superfamily_P53_like_DNA_bnd,PatternScan_TBOX_2,PatternScan_TBOX_1	-	no_errors
TCHH	7062	genome.wustl.edu	37	1	152085140	152085140	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	1	152085140	152085140	C	G	SNP	TCHH	NM_007113.2	human	genbank	58_37c	-1	provisional	missense	c.553	p.E185Q	0.006	NULL	PatternScan_S100_CABP,HMMPfam_S_100,PatternScan_EF_HAND_1,superfamily_SSF47473	-	no_errors
TKTL2	84076	genome.wustl.edu	37	4	164393824	164393824	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	164393824	164393824	A	G	SNP	TKTL2	NM_032136.4	human	genbank	58_37c	-1	validated	missense	c.1063	p.F355L	0.995	HMMPfam_Transket_pyr,superfamily_SSF52518	HMMPfam_Transketolase_N,PatternScan_TRANSKETOLASE_1,HMMPfam_Transket_pyr,PatternScan_TRANSKETOLASE_2,HMMPfam_Transketolase_C,superfamily_Transketo_C_like,superfamily_SSF52518	-	no_errors
TSLP	85480	genome.wustl.edu	37	5	110411667	110411667	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	5	110411667	110411667	G	A	SNP	TSLP	NM_033035.4	human	genbank	58_37c	+1	reviewed	silent	c.375	p.K125	0.000	NULL	NULL	-	no_errors
TTBK1	84630	genome.wustl.edu	37	6	43251629	43251629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	6	43251629	43251629	C	T	SNP	TTBK1	NM_032538.1	human	genbank	58_37c	+1	validated	missense	c.3151	p.R1051C	0.734	NULL	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
VWF	7450	genome.wustl.edu	37	12	6122726	6122726	+	Silent	SNP	G	G	A	rs146540001	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	12	6122726	6122726	G	A	SNP	VWF	NM_000552.3	human	genbank	58_37c	-1	reviewed	silent	c.5541	p.N1847	0.023	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_VWA,HMMSmart_SM00327,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL,superfamily_vWA-like	-	no_errors
ZNF473	25888	genome.wustl.edu	37	19	50548923	50548923	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	50548923	50548923	G	T	SNP	ZNF473	NM_001006656.1	human	genbank	58_37c	+1	validated	missense	c.1223	p.R408L	1.000	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF486	90649	genome.wustl.edu	37	19	20308633	20308633	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	19	20308633	20308633	C	G	SNP	ZNF486	NM_052852.2	human	genbank	58_37c	+1	provisional	missense	c.1114	p.H372D	0.983	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF518B	85460	genome.wustl.edu	37	4	10445216	10445216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	4	10445216	10445216	C	T	SNP	ZNF518B	NM_053042.2	human	genbank	58_37c	-1	validated	missense	c.2737	p.D913N	0.994	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZSCAN10	84891	genome.wustl.edu	37	16	3140511	3140511	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0CT-01A-31W-A071-09	TCGA-A2-A0CT-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2b412ad8-abda-4cf8-8f68-59dbce80031e	b34c4ee7-2776-40c7-9b34-b53e5674aab8	16	3140511	3140511	G	A	SNP	ZSCAN10	NM_032805.1	human	genbank	58_37c	-1	provisional	silent	c.759	p.L253	0.000	NULL	HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
