Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABCC11	85320	genome.wustl.edu	37	16	48209200	48209200	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	48209200	48209200	G	C	SNP	ABCC11	NM_032583.3	human	genbank	58_37c	-1	reviewed	missense	c.3667	p.Q1223E	1.000	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_ABC_membrane,HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ACTN1	87	genome.wustl.edu	37	14	69387787	69387787	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	14	69387787	69387787	G	A	SNP	ACTN1	NM_001130004.1	human	genbank	58_37c	-1	reviewed	silent	c.276	p.N92	0.785	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_efhand_Ca_insen,superfamily_Calponin-homology,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
AKAP13	11214	genome.wustl.edu	37	15	86198828	86198828	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	86198828	86198828	G	A	SNP	AKAP13	NM_006738.4	human	genbank	58_37c	+1	reviewed	missense	c.4555	p.E1519K	0.987	NULL	HMMPfam_RhoGEF,HMMSmart_RhoGEF,superfamily_DH-domain,HMMPfam_PH,HMMSmart_PH,superfamily_ANK,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,PatternScan_EF_HAND_1,HMMPfam_RII_binding_1,superfamily_SSF50729,superfamily_SSF57889	-	no_errors
ALDH9A1	223	genome.wustl.edu	37	1	165667703	165667703	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	165667703	165667703	G	A	SNP	ALDH9A1	NM_000696.3	human	genbank	58_37c	-1	reviewed	silent	c.93	p.V31	0.369	superfamily_Aldehyde_DH/Histidinol_DH	HMMPfam_Aldedh,PatternScan_ALDEHYDE_DEHYDR_CYS,PatternScan_ALDEHYDE_DEHYDR_GLU,superfamily_Aldehyde_DH/Histidinol_DH	-	no_errors
ANKRD53	79998	genome.wustl.edu	37	2	71211878	71211878	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	71211878	71211878	G	A	SNP	ANKRD53	NM_001115116.1	human	genbank	58_37c	+1	validated	silent	c.1041	p.S347	0.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
C1QB	713	genome.wustl.edu	37	1	22987403	22987403	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	22987403	22987403	G	A	SNP	C1QB	NM_000491.3	human	genbank	58_37c	+1	reviewed	missense	c.286	p.G96S	1.000	HMMPfam_Collagen	HMMPfam_C1q,HMMSmart_SM00110,HMMPfam_Collagen,superfamily_TNF-like	-	no_errors
C1orf127	148345	genome.wustl.edu	37	1	11017751	11017751	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	11017751	11017751	C	T	SNP	C1orf127	ENST00000377008	human	ensembl	58_37c	-1	known	silent	c.168	p.L56	1.000	NULL	NULL	-	no_errors
C9orf144B	0	genome.wustl.edu	37	9	34726876	34726876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	34726876	34726876	C	T	SNP	C9orf144B	NM_001141917.1	human	genbank	58_37c	-1	validated	missense	c.361	p.E121K	0.828	NULL	NULL	-	no_errors
CAD	790	genome.wustl.edu	37	2	27465222	27465222	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	27465222	27465222	G	A	SNP	CAD	NM_004341.3	human	genbank	58_37c	+1	reviewed	missense	c.6149	p.G2050E	1.000	superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace_N	HMMPfam_GATase,PatternScan_DIHYDROOROTASE_1,PatternScan_DIHYDROOROTASE_2,HMMPfam_CPSase_sm_chain,superfamily_CP_synthsmall,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,HMMPfam_CPSase_L_D3,superfamily_CarbamoylP_synth_lsu_oligo,HMMPfam_CPSase_L_chain,PatternScan_CARBAMOYLTRANSFERASE,superfamily_Asp/Orn_carbamoyltranf,HMMPfam_OTCace,HMMPfam_OTCace_N,HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,HMMPfam_MGS,superfamily_PreATP-grasp-like,superfamily_SSF51556,superfamily_SSF52317,superfamily_SSF52335,superfamily_SSF56059	-	no_errors
CALN1	83698	genome.wustl.edu	37	7	71868340	71868340	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	7	71868340	71868340	C	T	SNP	CALN1	NM_031468.3	human	genbank	58_37c	-1	validated	silent	c.15	p.E5	1.000	NULL	PatternScan_S100_CABP,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
CATSPER2	117155	genome.wustl.edu	37	15	43925010	43925010	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	43925010	43925010	A	-	DEL	CATSPER2	NM_172095.1	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.1301	p.L434fs	0.001	NULL	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels	-	no_errors
CD5	921	genome.wustl.edu	37	11	60885726	60885726	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	60885726	60885726	G	A	SNP	CD5	NM_014207.3	human	genbank	58_37c	+1	validated	missense	c.174	p.M58I	0.000	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like	HMMPfam_SRCR,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68846043	68846043	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	68846043	68846043	C	-	DEL	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1014	p.P339fs	0.001	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CDKL4	344387	genome.wustl.edu	37	2	39417556	39417556	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	2	39417556	39417556	G	A	SNP	CDKL4	NM_001009565.1	human	genbank	58_37c	-1	provisional	missense	c.542	p.S181L	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CELA2B	51032	genome.wustl.edu	37	1	15808198	15808198	+	Missense_Mutation	SNP	C	T	T	rs7520335	byCluster;byFrequency;by2Hit2Allele;by1000genomes	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	15808198	15808198	C	T	SNP	CELA2B	ENST00000442979	human	ensembl	58_37c	+1	known	missense	c.292	p.R98C	0.000	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CSRNP1	64651	genome.wustl.edu	37	3	39185751	39185751	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	3	39185751	39185751	G	A	SNP	CSRNP1	NM_033027.3	human	genbank	58_37c	-1	reviewed	silent	c.657	p.I219	0.897	NULL	NULL	-	no_errors
CTNNBL1	56259	genome.wustl.edu	37	20	36361374	36361374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	36361374	36361374	C	T	SNP	CTNNBL1	NM_030877.3	human	genbank	58_37c	+1	reviewed	missense	c.124	p.R42W	0.840	NULL	HMMPfam_DUF1716,superfamily_ARM repeat	-	no_errors
CTSG	1511	genome.wustl.edu	37	14	25044494	25044494	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	14	25044494	25044494	C	T	SNP	CTSG	NM_001911.2	human	genbank	58_37c	-1	reviewed	silent	c.180	p.L60	0.993	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
CYFIP2	26999	genome.wustl.edu	37	5	156817668	156817671	+	Frame_Shift_Del	DEL	AAGA	AAGA	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	AAGA	AAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	5	156817668	156817671	AAGA	-	DEL	CYFIP2	NM_001037332.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.3586_3589	p.K1196fs	1.000:1.000:1.000:1.000	HMMPfam_FragX_IP	HMMPfam_FragX_IP	-	no_errors
DBC1	1620	genome.wustl.edu	37	9	121929944	121929944	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	121929944	121929944	G	A	SNP	DBC1	NM_014618.2	human	genbank	58_37c	-1	validated	silent	c.1704	p.S568	0.822	NULL	HMMSmart_SM00457	-	no_errors
DENND4C	55667	genome.wustl.edu	37	9	19361904	19361904	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	19361904	19361904	A	-	DEL	DENND4C	NM_017925.4	human	genbank	58_37c	+1	provisional	frame_shift_del	c.4612	p.N1538fs	1.000	NULL	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_PPR,HMMPfam_dDENN,HMMSmart_SM00801	-	no_errors
ENSG00000245308	0	genome.wustl.edu	37	9	135975880	135975880	+	RNA	SNP	C	C	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	135975880	135975880	C	A	SNP	RALGDS	ENST00000469972	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-135975880	NULL	0.000	-	-	-	no_coding_region
ENSG00000247256	0	genome.wustl.edu	37	13	28016548	28016548	+	RNA	DEL	C	C	-	rs139629649	by1000genomes	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	13	28016548	28016548	C	-	DEL	MTIF3	NM_152912.4	human	genbank	58_37c	-1	reviewed	intronic	c.1-1962	e1-1962	0.001	-	-	-	no_errors
ERCC5	2073	genome.wustl.edu	37	13	103514694	103514694	+	Missense_Mutation	SNP	G	G	A	rs4150315	byCluster;byFrequency	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	13	103514694	103514694	G	A	SNP	ERCC5	NM_000123.2	human	genbank	58_37c	+1	reviewed	missense	c.1195	p.E399K	0.940	superfamily_PIN domain-like	HMMPfam_XPG_N,HMMSmart_SM00485,HMMPfam_XPG_I,HMMSmart_SM00484,PatternScan_XPG_2,HMMSmart_SM00279,PatternScan_XPG_1,superfamily_5' to 3' exonuclease C-terminal subdomain,superfamily_PIN domain-like	-	no_errors
F11R	50848	genome.wustl.edu	37	1	160970527	160970527	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	160970527	160970527	G	C	SNP	F11R	NM_016946.4	human	genbank	58_37c	-1	reviewed	missense	c.282	p.I94M	0.986	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
FAM120C	54954	genome.wustl.edu	37	X	54143207	54143207	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	54143207	54143207	C	G	SNP	FAM120C	NM_017848.4	human	genbank	58_37c	-1	validated	missense	c.2083	p.E695Q	1.000	NULL	NULL	-	no_errors
FUBP1	8880	genome.wustl.edu	37	1	78444657	78444657	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	78444657	78444657	G	T	SNP	FUBP1	NM_003902.3	human	genbank	58_37c	-1	reviewed	missense	c.32	p.S11Y	0.117	NULL	HMMSmart_SM00322,HMMPfam_DUF1897,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
G0S2	50486	genome.wustl.edu	37	1	209849155	209849155	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	209849155	209849155	G	A	SNP	G0S2	NM_015714.3	human	genbank	58_37c	+1	validated	silent	c.126	p.L42	1.000	NULL	NULL	-	no_errors
GLCE	26035	genome.wustl.edu	37	15	69561032	69561032	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	15	69561032	69561032	A	-	DEL	GLCE	NM_015554.1	human	genbank	58_37c	+1	validated	frame_shift_del	c.1303	p.K435fs	0.999	HMMPfam_C5-epim_C	HMMPfam_C5-epim_C	-	no_errors
GRIA3	2892	genome.wustl.edu	37	X	122551281	122551281	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	122551281	122551281	C	G	SNP	GRIA3	ENST00000264357	human	ensembl	58_37c	+1	known	missense	c.1529	p.T510S	1.000	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
HLA-F	3134	genome.wustl.edu	37	6	29695854	29695854	+	Missense_Mutation	SNP	G	G	A	rs144229973	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	6	29695854	29695854	G	A	SNP	HLA-F	ENST00000399258	human	ensembl	58_37c	+1	known	missense	c.1279	p.E427K	0.202	NULL	HMMPfam_MHC_I,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_SM00407,superfamily_MHC antigen-recognition domain,superfamily_Immunoglobulin	-	no_errors
HYDIN	54768	genome.wustl.edu	37	16	70891628	70891628	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	70891628	70891628	T	C	SNP	HYDIN	NM_032821.2	human	genbank	58_37c	-1	validated	missense	c.12272	p.N4091S	1.000	NULL	superfamily_PapD-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ITPKB	3707	genome.wustl.edu	37	1	226836376	226836376	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	226836376	226836376	C	T	SNP	ITPKB	NM_002221.3	human	genbank	58_37c	-1	reviewed	missense	c.2029	p.A677T	1.000	HMMPfam_IPK,superfamily_SAICAR synthase-like	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	no_errors
KIAA1984	84960	genome.wustl.edu	37	9	139699835	139699835	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	139699835	139699835	G	A	SNP	KIAA1984	NM_001039374.4	human	genbank	58_37c	+1	validated	missense	c.874	p.E292K	0.010	NULL	NULL	-	no_errors
KIAA1984	84960	genome.wustl.edu	37	9	139700996	139700996	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	139700996	139700996	G	C	SNP	KIAA1984	NM_001039374.4	human	genbank	58_37c	+1	validated	missense	c.1150	p.E384Q	0.850	NULL	NULL	-	no_errors
MAGEC3	139081	genome.wustl.edu	37	X	140969318	140969318	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	140969318	140969318	C	G	SNP	MAGEC3	NM_138702.1	human	genbank	58_37c	+1	reviewed	missense	c.645	p.I215M	0.000	HMMPfam_MAGE	HMMPfam_MAGE	-	no_errors
MAP3K1	4214	genome.wustl.edu	37	5	56178672	56178673	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	5	56178672	56178673	-	A	INS	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	frame_shift_ins	c.3645_3646	p.I1215fs	0.977:0.997	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MINPP1	9562	genome.wustl.edu	37	10	89311854	89311854	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	10	89311854	89311854	T	-	DEL	MINPP1	NM_004897.4	human	genbank	58_37c	+1	validated	frame_shift_del	c.1083	p.S362fs	0.991	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like	HMMPfam_Acid_phosphat_A,superfamily_Phosphoglycerate mutase-like	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1254322	1254322	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	1254322	1254322	G	A	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.2154	p.L718	0.979	superfamily_Serine proterase inhibitors	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
MXRA5	25878	genome.wustl.edu	37	X	3242309	3242309	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	X	3242309	3242309	C	T	SNP	MXRA5	NM_015419.3	human	genbank	58_37c	-1	reviewed	missense	c.1417	p.G473S	0.049	NULL	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
MYH1	4619	genome.wustl.edu	37	17	10408307	10408307	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	17	10408307	10408307	A	G	SNP	MYH1	NM_005963.3	human	genbank	58_37c	-1	reviewed	silent	c.2511	p.Y837	1.000	superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_SSF52540	-	no_errors
NAV2	89797	genome.wustl.edu	37	11	19967967	19967967	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	19967967	19967967	C	-	DEL	NAV2	NM_182964.5	human	genbank	58_37c	+1	validated	frame_shift_del	c.2167	p.R723fs	1.000	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NOLC1	9221	genome.wustl.edu	37	10	103920079	103920079	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	10	103920079	103920079	G	C	SNP	NOLC1	NM_004741.3	human	genbank	58_37c	+1	validated	missense	c.1078	p.E360Q	0.995	NULL	HMMPfam_SRP40_C	-	no_errors
NPC1	4864	genome.wustl.edu	37	18	21114508	21114508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	18	21114508	21114508	C	T	SNP	NPC1	NM_000271.4	human	genbank	58_37c	-1	reviewed	missense	c.3493	p.V1165M	1.000	HMMPfam_Patched,superfamily_SSF82866	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
NUP214	8021	genome.wustl.edu	37	9	134015982	134015982	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	134015982	134015982	A	-	DEL	NUP214	NM_005085.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1179	p.T394fs	0.998	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like	-	no_errors
OR52N5	390075	genome.wustl.edu	37	11	5799613	5799613	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	5799613	5799613	G	A	SNP	OR52N5	NM_001001922.2	human	genbank	58_37c	-1	validated	silent	c.252	p.T84	0.003	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR7A5	26659	genome.wustl.edu	37	19	14938475	14938475	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	19	14938475	14938475	A	-	DEL	OR7A5	NM_017506.1	human	genbank	58_37c	-1	validated	frame_shift_del	c.579	p.N195fs	0.003	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PKD1	5310	genome.wustl.edu	37	16	2159446	2159446	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	2159446	2159446	G	A	SNP	PKD1	NM_001009944.2	human	genbank	58_37c	-1	reviewed	nonsense	c.5722	p.Q1908*	0.002	HMMPfam_PKD,HMMSmart_SM00089	HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_PKD,HMMSmart_SM00089,superfamily_PKD domain,HMMPfam_PLAT,HMMSmart_SM00308,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_LRR_1,HMMPfam_REJ,HMMPfam_WSC,HMMSmart_SM00369,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain),HMMPfam_PKD_channel,HMMSmart_SM00321,superfamily_C-type lectin-like,superfamily_L domain-like	-	no_errors
PLXNA2	5362	genome.wustl.edu	37	1	208255805	208255805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	208255805	208255805	C	T	SNP	PLXNA2	NM_025179.3	human	genbank	58_37c	-1	reviewed	missense	c.2347	p.V783M	1.000	NULL	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,superfamily_GTPase activation domain GAP,HMMPfam_Plexin_cytopl,superfamily_E set domains,superfamily_Plexin repeat	-	no_errors
PPP4C	5531	genome.wustl.edu	37	16	30094768	30094768	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	30094768	30094768	G	C	SNP	PPP4C	NM_002720.1	human	genbank	58_37c	+1	provisional	missense	c.357	p.Q119H	1.000	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases	HMMPfam_Metallophos,HMMSmart_SM00156,PatternScan_SER_THR_PHOSPHATASE,superfamily_Metallo-dependent phosphatases	-	no_errors
PTDSS2	81490	genome.wustl.edu	37	11	489482	489482	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	489482	489482	C	T	SNP	PTDSS2	NM_030783.1	human	genbank	58_37c	+1	provisional	missense	c.937	p.R313C	1.000	HMMPfam_PSS	HMMPfam_PSS	-	no_errors
RIMBP2	23504	genome.wustl.edu	37	12	130892283	130892283	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	130892283	130892283	G	A	SNP	RIMBP2	NM_015347.4	human	genbank	58_37c	-1	validated	silent	c.2913	p.N971	0.999	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_SH3_2	-	no_errors
RORB	6096	genome.wustl.edu	37	9	77300402	77300402	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	9	77300402	77300402	C	T	SNP	RORB	NM_006914.3	human	genbank	58_37c	+1	reviewed	silent	c.1248	p.I416	1.000	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain	HMMPfam_Hormone_recep,HMMSmart_SM00430,HMMPfam_zf-C4,HMMSmart_SM00399,PatternScan_NUCLEAR_REC_DBD_1,superfamily_Nuclear receptor ligand-binding domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
SAMD3	154075	genome.wustl.edu	37	6	130497064	130497064	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	6	130497064	130497064	T	-	DEL	SAMD3	NM_001017373.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.744	p.K248fs	1.000	NULL	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain	-	no_errors
SPTY2D1	144108	genome.wustl.edu	37	11	18636609	18636609	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	11	18636609	18636609	G	A	SNP	SPTY2D1	NM_194285.2	human	genbank	58_37c	-1	validated	silent	c.1212	p.S404	0.681	NULL	HMMPfam_SPT2,HMMSmart_SM00784	-	no_errors
STAC3	246329	genome.wustl.edu	37	12	57638000	57638000	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	57638000	57638000	G	A	SNP	STAC3	NM_145064.1	human	genbank	58_37c	-1	provisional	silent	c.867	p.I289	0.715	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMPfam_SH3_2,superfamily_Cysteine-rich domain	-	no_errors
TAS2R30	259293	genome.wustl.edu	37	12	11286524	11286524	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	12	11286524	11286524	A	-	DEL	TAS2R30	NM_001097643.1	human	genbank	58_37c	-1	provisional	frame_shift_del	c.320	p.L107fs	0.622	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like	-	no_errors
TMEM104	54868	genome.wustl.edu	37	17	72786402	72786402	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	17	72786402	72786402	G	A	SNP	TMEM104	NM_017728.3	human	genbank	58_37c	+1	validated	missense	c.313	p.E105K	1.000	NULL	HMMPfam_Aa_trans	-	no_errors
TPRX1	284355	genome.wustl.edu	37	19	48305639	48305650	+	In_Frame_Del	DEL	GGGCCTGGGATC	GGGCCTGGGATC	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	GGGCCTGGGATC	GGGCCTGGGATC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	19	48305639	48305650	GGGCCTGGGATC	-	DEL	TPRX1	NM_198479.2	human	genbank	58_37c	-1	validated	in_frame_del	c.629_618	p.PGPI208in_frame_del	0.077:0.077:0.076:0.064:0.061:0.056:0.042:0.003:0.000:0.000:0.000:0.000	NULL	NULL	-	no_errors
TRAPPC2L	51693	genome.wustl.edu	37	16	88926159	88926159	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	16	88926159	88926159	G	A	SNP	TRAPPC2L	NM_016209.3	human	genbank	58_37c	+1	validated	splice_site	c.294+1	e3+1	1.000	-	-	-	no_errors
TRMT2A	27037	genome.wustl.edu	37	22	20102144	20102144	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	22	20102144	20102144	C	T	SNP	TRMT2A	NM_022727.4	human	genbank	58_37c	-1	validated	missense	c.1186	p.D396N	1.000	superfamily_S-adenosyl-L-methionine-dependent methyltransferases	HMMPfam_Methyltransf_11,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_RNA-binding domain RBD	-	no_errors
TXNIP	10628	genome.wustl.edu	37	1	145439000	145439000	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	1	145439000	145439000	T	C	SNP	TXNIP	NM_006472.3	human	genbank	58_37c	+1	validated	silent	c.198	p.T66	0.829	HMMPfam_Arrestin_N,superfamily_Ig_E-set	HMMPfam_Arrestin_N,HMMPfam_Arrestin_C,superfamily_Ig_E-set	-	no_errors
UBA6	55236	genome.wustl.edu	37	4	68529634	68529634	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	4	68529634	68529634	T	-	DEL	UBA6	NM_018227.5	human	genbank	58_37c	-1	validated	frame_shift_del	c.929	p.K310fs	0.998	superfamily_Activating enzymes of the ubiquitin-like proteins	HMMPfam_UBACT,HMMPfam_ThiF,superfamily_Activating enzymes of the ubiquitin-like proteins,HMMPfam_UBA_e1_C,HMMPfam_UBA_e1_thiolCys	-	no_errors
UBOX5	22888	genome.wustl.edu	37	20	3096074	3096074	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	3096074	3096074	C	T	SNP	UBOX5	NM_014948.2	human	genbank	58_37c	-1	validated	missense	c.1294	p.E432K	1.000	NULL	HMMPfam_U-box,HMMSmart_SM00504,PatternScan_ZF_RING_1,superfamily_RING/U-box	-	no_errors
URB1	9875	genome.wustl.edu	37	21	33744886	33744886	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	21	33744886	33744886	G	-	DEL	URB1	NM_014825.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.931	p.L311fs	1.000	NULL	superfamily_ARM repeat	-	no_errors
ZDHHC20	253832	genome.wustl.edu	37	13	21955625	21955625	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	13	21955625	21955625	G	A	SNP	ZDHHC20	NM_153251.2	human	genbank	58_37c	-1	provisional	silent	c.1005	p.D335	0.996	NULL	HMMPfam_zf-DHHC	-	no_errors
ZNFX1	57169	genome.wustl.edu	37	20	47882678	47882678	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A2-A0YD-01A-11D-A10G-09	TCGA-A2-A0YD-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	30c9f9e5-90b2-4c73-bce5-eb6a3d31f496	d770c579-5a94-4ac5-a6db-3151b33e3a22	20	47882678	47882678	G	A	SNP	ZNFX1	NM_021035.2	human	genbank	58_37c	-1	validated	silent	c.1996	p.L666	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_zf-NF-X1,HMMSmart_SM00438,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
