Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name	start	stop	reference	variant	type	gene_name	transcript_name	transcript_species	transcript_source	transcript_version	strand	transcript_status	trv_type	c_position	amino_acid_change	ucsc_cons	domain	all_domains	deletion_substructures	transcript_error	NormalRefReads_WU	NormalVarReads_WU	NormalVAF_WU	TumorRefReads_WU	TumorVarReads_WU	TumorVAF_WU	RNARefReads_WU	RNAVarReads_WU	RNAVAF_WU
MT-CO3	0	genome.wustl.edu	36	MT	9731	9731	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	MT	9731	9731	T	C	SNP	MT-CO3	ENST00000362079	human	ensembl	54_36p	+1	known	missense	c.524	p.L175P	NULL	HMMPfam_COX3,superfamily_CytC_oxdse_III	HMMPfam_COX3,superfamily_CytC_oxdse_III	-	no_stop_codon:bad_bp_length_for_coding_region	2658	72	2.62	348	1200	77.32	NA	NA	NA
MT-ND5	0	genome.wustl.edu	36	MT	13370	13370	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	MT	13370	13370	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1033	p.S345P	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors	1701	13	0.75	962	128	11.70	NA	NA	NA
MT-ND5	0	genome.wustl.edu	36	MT	13763	13763	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	MT	13763	13763	T	C	SNP	MT-ND5	ENST00000361567	human	ensembl	54_36p	+1	known	missense	c.1426	p.S476P	NULL	HMMPfam_NADH5_C	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	no_errors	801	21	2.52	242	215	47.05	NA	NA	NA
CXorf58	0	genome.wustl.edu	36	X	23863381	23863381	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	X	23863381	23863381	C	T	SNP	CXorf58	NM_152761.1	human	genbank	54_36p	+1	predicted	nonsense	c.703	p.R235*	0.770	NULL	NULL	-	no_errors	131	2	1.49	79	43	35.25	NA	NA	NA
SRPX	0	genome.wustl.edu	36	X	37901198	37901198	+	Silent	SNP	C	C	T			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	X	37901198	37901198	C	T	SNP	SRPX	NM_006307.3	human	genbank	54_36p	-1	provisional	silent	c.984	p.T328	0.437	NULL	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_HYR,superfamily_Complement control module/SCR domain	-	no_errors	132	1	0.75	95	42	30.43	3	0	0.00
AKR7A2	0	genome.wustl.edu	36	1	19505127	19505127	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	1	19505127	19505127	C	G	SNP	AKR7A2	NM_003689.2	human	genbank	54_36p	-1	validated	missense	c.890	p.R297P	0.998	superfamily_Aldo/ket_red	HMMPfam_Aldo_ket_red,superfamily_Aldo/ket_red	-	no_errors	56	0	0.00	10	13	56.52	22	13	37.14
SLFNL1	0	genome.wustl.edu	36	1	41256259	41256259	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	1	41256259	41256259	C	T	SNP	SLFNL1	NM_144990.2	human	genbank	54_36p	-1	provisional	missense	c.592	p.D198N	0.971	NULL	HMMPfam_AAA_4	-	no_errors	18	0	0.00	28	14	33.33	6	4	40.00
PRELP	0	genome.wustl.edu	36	1	201719493	201719493	+	Silent	SNP	C	C	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	1	201719493	201719493	C	A	SNP	PRELP	NM_002725.3	human	genbank	54_36p	+1	reviewed	silent	c.558	p.I186	1.000	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like	HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,superfamily_L domain-like	-	no_errors	64	1	1.52	35	22	38.60	NA	NA	NA
TTN	0	genome.wustl.edu	36	2	179193024	179193024	+	Missense_Mutation	SNP	A	A	C			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	A	A			A	A	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	2	179193024	179193024	A	C	SNP	TTN	ENST00000375038	human	ensembl	54_36p	-1	known	missense	c.34311	p.D11437E	1.000	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Concanavalin A-like lectins/glucanases,superfamily_WD40 repeat-like,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Protein kinase-like (PK-like),superfamily_WD40 repeat-like,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1,superfamily_Immunoglobulin,superfamily_vWA-like,superfamily_Positive stranded ssRNA viruses	-	no_errors	109	3	2.68	70	33	32.04	3	0	0.00
MST1R	0	genome.wustl.edu	36	3	49911341	49911341	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	3	49911341	49911341	C	T	SNP	MST1R	NM_002447.2	human	genbank	54_36p	-1	validated	missense	c.1511	p.R504H	1.000	HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMPfam_Sema,HMMSmart_SM00630,superfamily_Sema domain,HMMPfam_PSI,HMMSmart_SM00220,HMMPfam_TIG,HMMSmart_SM00429,HMMSmart_SM00423,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like),superfamily_E set domains,superfamily_Plexin repeat,PatternScan_PROTEIN_KINASE_ATP	-	no_errors	22	1	4.35	17	9	34.62	8	3	27.27
HIST1H3D	0	genome.wustl.edu	36	6	26305375	26305375	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	6	26305375	26305375	T	A	SNP	HIST1H3D	ENST00000377831	human	ensembl	54_36p	-1	known	nonsense	c.484	p.R162*	1.000	NULL	HMMSmart_SM00414,PatternScan_HISTONE_H2A,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors	18	0	0.00	21	11	34.38	61	38	38.00
KCNU1	0	genome.wustl.edu	36	8	36899260	36899260	+	Silent	SNP	G	G	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	8	36899260	36899260	G	A	SNP	KCNU1	NM_001031836.2	human	genbank	54_36p	+1	validated	silent	c.2691	p.T897	0.932	NULL	HMMPfam_BK_channel_a,HMMPfam_Ion_trans,superfamily_NAD(P)-bd,superfamily_SSF81324	-	no_errors	80	1	1.23	71	58	44.96	NA	NA	NA
DBC1	0	genome.wustl.edu	36	9	121010841	121010841	+	Silent	SNP	G	G	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	9	121010841	121010841	G	A	SNP	DBC1	NM_014618.2	human	genbank	54_36p	-1	validated	silent	c.1122	p.P374	1.000	NULL	HMMSmart_SM00457	-	no_errors	95	1	1.04	131	72	35.47	NA	NA	NA
TACC2	0	genome.wustl.edu	36	10	123960274	123960274	+	Missense_Mutation	SNP	C	C	T			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	10	123960274	123960274	C	T	SNP	TACC2	NM_206862.2	human	genbank	54_36p	+1	reviewed	missense	c.6344	p.T2115M	0.962	NULL	HMMPfam_TACC	-	no_errors	100	2	1.94	50	24	32.43	NA	NA	NA
OR4C6	0	genome.wustl.edu	36	11	55189860	55189860	+	Silent	SNP	G	G	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	11	55189860	55189860	G	A	SNP	OR4C6	NM_001004704.1	human	genbank	54_36p	+1	provisional	silent	c.642	p.A214	0.001	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors	113	4	3.39	121	79	39.50	2	0	0.00
DAGLA	0	genome.wustl.edu	36	11	61259672	61259672	+	Silent	SNP	C	C	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	11	61259672	61259672	C	A	SNP	DAGLA	NM_006133.1	human	genbank	54_36p	+1	validated	silent	c.1192	p.R398	1.000	HMMPfam_Lipase_3,superfamily_SSF53474	HMMPfam_Lipase_3,PatternScan_LIPASE_SER,superfamily_SSF53474	-	no_errors	24	0	0.00	18	4	17.39	1	3	75.00
SH2B3	0	genome.wustl.edu	36	12	110369919	110369919	+	Missense_Mutation	SNP	T	T	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	12	110369919	110369919	T	A	SNP	SH2B3	NM_005475.2	human	genbank	54_36p	+1	validated	missense	c.1313	p.L438H	0.965	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain	HMMPfam_SH2,HMMSmart_SM00252,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_Phe_ZIP,superfamily_Phenylalanine zipper,superfamily_PH domain-like,superfamily_SH2 domain	-	no_errors	37	0	0.00	17	19	52.78	57	44	43.56
DIS3	0	genome.wustl.edu	36	13	72235718	72235718	+	Missense_Mutation	SNP	T	T	C			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	T	T			T	T	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	13	72235718	72235718	T	C	SNP	DIS3	NM_014953.1	human	genbank	54_36p	-1	validated	missense	c.1999	p.M667V	1.000	HMMPfam_RNB	HMMPfam_RNB,PatternScan_RIBONUCLEASE_II,HMMSmart_SM00670,superfamily_PIN domain-like	-	no_errors	54	0	0.00	85	50	37.04	15	6	28.57
PRKD1	0	genome.wustl.edu	36	14	29163175	29163175	+	Silent	SNP	G	G	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	14	29163175	29163175	G	A	SNP	PRKD1	NM_002742.2	human	genbank	54_36p	-1	validated	silent	c.1839	p.I613	0.995	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMPfam_PH,HMMSmart_PH,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF50729,superfamily_SSF57889	-	no_errors	104	2	1.87	135	100	42.55	1	0	0.00
SLC24A4	0	genome.wustl.edu	36	14	91978270	91978270	+	Missense_Mutation	SNP	G	G	C			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	14	91978270	91978270	G	C	SNP	SLC24A4	NM_153646.2	human	genbank	54_36p	+1	validated	missense	c.427	p.G143R	1.000	HMMPfam_Na_Ca_ex	HMMPfam_Na_Ca_ex	-	no_errors	47	3	6.00	79	27	25.47	NA	NA	NA
MOK	0	genome.wustl.edu	36	14	101769807	101769807	+	Silent	SNP	G	G	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	14	101769807	101769807	G	A	SNP	RAGE	NM_014226.1	human	genbank	54_36p	-1	provisional	silent	c.663	p.P221	0.089	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors	126	1	0.78	205	94	31.44	2	0	0.00
ST8SIA2	0	genome.wustl.edu	36	15	90778526	90778526	+	Silent	SNP	C	C	T			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	15	90778526	90778526	C	T	SNP	ST8SIA2	NM_006011.3	human	genbank	54_36p	+1	reviewed	silent	c.207	p.D69	1.000	NULL	HMMPfam_Glyco_transf_29	-	no_errors	66	1	1.47	79	41	34.17	NA	NA	NA
CHST6	0	genome.wustl.edu	36	16	74070660	74070660	+	Missense_Mutation	SNP	C	C	G			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	16	74070660	74070660	C	G	SNP	CHST6	NM_021615.4	human	genbank	54_36p	-1	provisional	missense	c.568	p.D190H	0.996	HMMPfam_Sulfotransfer_1,superfamily_SSF52540	HMMPfam_Sulfotransfer_1,superfamily_SSF52540	-	no_errors	16	0	0.00	9	4	30.77	NA	NA	NA
CRISPLD2	0	genome.wustl.edu	36	16	83463616	83463616	+	Splice_Site	SNP	G	G	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	16	83463616	83463616	G	A	SNP	CRISPLD2	NM_031476.3	human	genbank	54_36p	+1	validated	splice_site	c.981+1	e8+1	0.998	-	-	-	no_errors	93	0	0.00	99	56	36.13	2	0	0.00
ASXL1	0	genome.wustl.edu	36	20	30485895	30485895	+	Splice_Site	SNP	G	G	T			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	20	30485895	30485895	G	T	SNP	ASXL1	NM_015338.4	human	genbank	54_36p	+1	reviewed	splice_site	c.1720-1	e13-1	1.000	-	-	-	no_errors	16	0	0.00	39	20	33.90	14	23	62.16
KRTAP24-1	0	genome.wustl.edu	36	21	30576841	30576841	+	Missense_Mutation	SNP	G	G	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	21	30576841	30576841	G	A	SNP	KRTAP24-1	NM_001085455.1	human	genbank	54_36p	-1	validated	missense	c.281	p.P94L	0.980	HMMPfam_PMG	HMMPfam_PMG	-	no_errors	78	4	4.88	121	69	36.32	NA	NA	NA
RUNX1	0	genome.wustl.edu	36	21	35153653	35153653	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	G	G			G	G	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	21	35153653	35153653	G	A	SNP	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	nonsense	c.601	p.R201*	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	106	4	3.60	48	24	33.33	437	335	43.34
RUNX1	0	genome.wustl.edu	36	21	35174746	35174746	+	Missense_Mutation	SNP	C	C	A			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	C	C			C	C	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	21	35174746	35174746	C	A	SNP	RUNX1	NM_001754.2	human	genbank	54_36p	-1	reviewed	missense	c.486	p.R162S	1.000	superfamily_p53-like transcription factors,HMMPfam_Runt	superfamily_p53-like transcription factors,HMMPfam_Runt,HMMPfam_RunxI	-	no_errors	53	0	0.00	8	6	42.86	292	399	57.66
SUMO2	0	genome.wustl.edu	36	17	70682466	70682467	+	Frame_Shift_Ins	INS	-	-	TA			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	-	-			-	-	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	17	70682466	70682467	-	TA	INS	SUMO2	NM_006937.1	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.201_200	p.N68fs	1.000:1.000	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like	-	no_errors	122	1	0.79	59	22	36.67	3	1	20.00
TCF4	0	genome.wustl.edu	36	18	51047117	51047118	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AB-2927-03A-01W-0755-09	TCGA-AB-2927-11A-01W-0755-09	-	-			-	-	Verified	Valid	Somatic	Phase_IV	Capture		1	dbGAP	Illumina HiSeq	46bbb19d-2bc9-4f0a-ac4e-cad7327ca142	26459589-446d-4b29-90b8-e2d482fe291b	18	51047117	51047118	-	G	INS	TCF4	NM_001083962.1	human	genbank	54_36p	-1	reviewed	frame_shift_ins	c.1838_1837	p.Q613fs	1.000:1.000	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors	65	1	1.54	66	18	26.47	173	81	44.75
