Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ADAMTS5	11096	genome.wustl.edu	37	21	28307044	28307044	+	Missense_Mutation	SNP	C	C	T	rs142161826	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	21	28307044	28307044	C	T	SNP	ADAMTS5	NM_007038.3	human	genbank	58_37c	-1	reviewed	missense	c.1430	p.R477Q	0.717	NULL	"HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_Reprolysin,HMMPfam_Pep_M12B_propep,PatternScan_ZINC_PROTEASE,HMMSmart_SM00608,HMMPfam_ADAM_spacer1,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
ANKMY1	51281	genome.wustl.edu	37	2	241468736	241468736	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	241468736	241468736	G	A	SNP	ANKMY1	NM_016552.2	human	genbank	58_37c	-1	validated	missense	c.404	p.S135L	0.002	NULL	PatternScan_WW_DOMAIN_1,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat,HMMPfam_zf-MYND,PatternScan_ZF_MYND_1,HMMPfam_MORN,HMMSmart_SM00698,superfamily_Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain	-	no_errors
BAG3	9531	genome.wustl.edu	37	10	121429471	121429471	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	10	121429471	121429471	C	T	SNP	BAG3	NM_004281.3	human	genbank	58_37c	+1	reviewed	missense	c.289	p.P97S	1.000	NULL	HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,HMMPfam_BAG,HMMSmart_BAG,superfamily_SSF63491	-	no_errors
C1orf175	374977	genome.wustl.edu	37	1	55118602	55118602	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	1	55118602	55118602	G	A	SNP	C1orf175	NM_001039464.2	human	genbank	58_37c	+1	validated	missense	c.3	p.M1I	0.901	NULL	superfamily_ARM repeat	-	no_errors
CDCA2	157313	genome.wustl.edu	37	8	25325771	25325771	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	8	25325771	25325771	T	C	SNP	CDCA2	NM_152562.2	human	genbank	58_37c	+1	validated	missense	c.577	p.F193L	0.000	NULL	NULL	-	no_errors
COL12A1	1303	genome.wustl.edu	37	6	75823017	75823017	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	6	75823017	75823017	G	A	SNP	COL12A1	NM_004370.5	human	genbank	58_37c	-1	reviewed	missense	c.7853	p.T2618M	0.991	HMMSmart_SM00210,superfamily_Concanavalin A-like lectins/glucanases	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00210,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_Collagen,superfamily_Fibronectin type III,superfamily_Concanavalin A-like lectins/glucanases,superfamily_vWA-like	-	no_errors
ENSG00000223709	0	genome.wustl.edu	37	11	89791153	89791153	+	Missense_Mutation	SNP	C	C	G	rs150561996	byCluster	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	11	89791153	89791153	C	G	SNP	ENSG00000223709	ENST00000436580	human	ensembl	58_37c	-1	known	missense	c.964	p.G322R	0.011	NULL	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMSmart_SM00449,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
FAM124A	220108	genome.wustl.edu	37	13	51855020	51855020	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	13	51855020	51855020	G	C	SNP	FAM124A	NM_145019.2	human	genbank	58_37c	+1	predicted	silent	c.1377	p.S459	0.748	NULL	NULL	-	no_errors
GALNT6	11226	genome.wustl.edu	37	12	51771043	51771043	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	51771043	51771043	G	A	SNP	GALNT6	NM_007210.3	human	genbank	58_37c	-1	reviewed	silent	c.600	p.V200	1.000	HMMPfam_Glycos_transf_2,superfamily_SSF53448	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,HMMPfam_Glycos_transf_2,superfamily_RicinB_like,superfamily_SSF53448	-	no_errors
GPR32	2854	genome.wustl.edu	37	19	51274851	51274851	+	Missense_Mutation	SNP	A	A	C	rs78840344	byCluster	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	19	51274851	51274851	A	C	SNP	GPR32	NM_001506.1	human	genbank	58_37c	+1	provisional	missense	c.994	p.T332P	0.018	superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
GRIPAP1	56850	genome.wustl.edu	37	X	48837669	48837669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	X	48837669	48837669	C	T	SNP	GRIPAP1	NM_020137.3	human	genbank	58_37c	-1	reviewed	missense	c.1888	p.E630K	1.000	NULL	superfamily_Prefoldin	-	no_errors
GSN	2934	genome.wustl.edu	37	9	124079465	124079465	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	9	124079465	124079465	C	T	SNP	GSN	NM_000177.4	human	genbank	58_37c	+1	reviewed	silent	c.1008	p.H336	0.939	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	HMMSmart_SM00262,HMMPfam_Gelsolin,superfamily_Actin depolymerizing proteins	-	no_errors
HECTD2	143279	genome.wustl.edu	37	10	93258862	93258862	+	Silent	SNP	A	A	G	rs146615071	byFrequency	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	10	93258862	93258862	A	G	SNP	HECTD2	NM_182765.3	human	genbank	58_37c	+1	validated	silent	c.1905	p.A635	1.000	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	-	no_errors
HGD	3081	genome.wustl.edu	37	3	120369683	120369683	+	Silent	SNP	G	G	A	rs140977117	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	3	120369683	120369683	G	A	SNP	HGD	NM_000187.3	human	genbank	58_37c	-1	reviewed	silent	c.372	p.D124	0.996	HMMPfam_HgmA,superfamily_RmlC-like cupins	HMMPfam_HgmA,superfamily_RmlC-like cupins	-	no_errors
HSD17B13	345275	genome.wustl.edu	37	4	88231392	88231393	+	Splice_Site	INS	-	-	A	rs68129849	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	4	88231392	88231393	-	A	INS	HSD17B13	NM_178135.3	human	genbank	58_37c	-1	validated	splice_site_ins	c.812+2_812+1	e6+2	1.000:1.000	-	-	-	no_errors
IL1R2	7850	genome.wustl.edu	37	2	102625086	102625089	+	Frame_Shift_Del	DEL	CAGC	CAGC	-	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	CAGC	CAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	102625086	102625089	CAGC	-	DEL	IL1R2	NM_004633.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.49_52	p.Q17fs	0.012:0.005:0.008:0.006	NULL	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
IL1R2	7850	genome.wustl.edu	37	2	102625095	102625095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	102625095	102625095	G	A	SNP	IL1R2	NM_004633.3	human	genbank	58_37c	+1	reviewed	missense	c.58	p.A20T	0.082	NULL	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
KRT18	3875	genome.wustl.edu	37	12	53344651	53344651	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	53344651	53344651	C	T	SNP	KRT18	NM_000224.2	human	genbank	58_37c	+1	reviewed	silent	c.618	p.L206	1.000	HMMPfam_Filament	HMMPfam_Filament,PatternScan_IF	-	no_errors
LOC646096	646096	genome.wustl.edu	37	15	20488870	20488870	+	RNA	SNP	G	G	A	rs299671	byCluster;byFrequency;by2Hit2Allele	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	15	20488870	20488870	G	A	SNP	LOC646096	XR_040858.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.986	-	-	-	no_errors
LOC646214	646214	genome.wustl.edu	37	15	21937168	21937168	+	RNA	SNP	C	C	T	rs12185110	byCluster;byFrequency	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	15	21937168	21937168	C	T	SNP	LOC646214	NR_027053.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
LRRC49	54839	genome.wustl.edu	37	15	71276481	71276483	+	In_Frame_Del	DEL	CAA	CAA	-	rs3834543	byCluster;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	CAA	CAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	15	71276481	71276483	CAA	-	DEL	LRRC49	NM_017691.2	human	genbank	58_37c	+1	validated	in_frame_del	c.1054_1056	p.Q354in_frame_del	1.000:1.000:0.997	NULL	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	-	no_errors
LRRK2	120892	genome.wustl.edu	37	12	40714892	40714892	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	40714892	40714892	T	C	SNP	LRRK2	NM_198578.3	human	genbank	58_37c	+1	reviewed	missense	c.5072	p.I1691T	1.000	NULL	PatternScan_RCC1_2,HMMPfam_LRR_1,HMMSmart_WD40,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,superfamily_WD40_like,HMMPfam_Miro,superfamily_ARM-type_fold,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF52058,superfamily_SSF52540	-	no_errors
NAV3	89795	genome.wustl.edu	37	12	78444719	78444719	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	78444719	78444719	C	T	SNP	NAV3	NM_014903.4	human	genbank	58_37c	+1	validated	nonsense	c.2308	p.R770*	1.000	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NCOA1	8648	genome.wustl.edu	37	2	24905948	24905948	+	Missense_Mutation	SNP	C	C	A	rs148122475	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	24905948	24905948	C	A	SNP	NCOA1	NM_003743.4	human	genbank	58_37c	+1	reviewed	missense	c.483	p.H161Q	0.958	HMMSmart_SM00091,HMMPfam_PAS,superfamily_PYP-like sensor domain (PAS domain)	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
OR1Q1	158131	genome.wustl.edu	37	9	125377610	125377610	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	9	125377610	125377610	G	A	SNP	OR1Q1	NM_012364.1	human	genbank	58_37c	+1	provisional	missense	c.594	p.M198I	0.014	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PACS2	23241	genome.wustl.edu	37	14	105856299	105856299	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	14	105856299	105856299	C	G	SNP	PACS2	NM_001100913.1	human	genbank	58_37c	+1	validated	missense	c.2002	p.P668A	1.000	HMMPfam_Pacs-1	HMMPfam_Pacs-1	-	no_errors
PBXIP1	57326	genome.wustl.edu	37	1	154918213	154918213	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	1	154918213	154918213	T	A	SNP	PBXIP1	NM_020524.2	human	genbank	58_37c	-1	provisional	missense	c.1937	p.D646V	1.000	NULL	NULL	-	no_errors
PCDH10	57575	genome.wustl.edu	37	4	134071406	134071406	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	4	134071406	134071406	C	T	SNP	PCDH10	NM_032961.1	human	genbank	58_37c	+1	reviewed	silent	c.111	p.I37	1.000	HMMSmart_SM00112,HMMPfam_Cadherin_2,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,PatternScan_EGF_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PHF19	26147	genome.wustl.edu	37	9	123629214	123629214	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	9	123629214	123629214	C	G	SNP	PHF19	NM_015651.1	human	genbank	58_37c	-1	validated	missense	c.644	p.R215P	1.000	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	HMMSmart_SM00249,HMMSmart_SM00333,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178928079	178928079	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	3	178928079	178928079	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1357	p.E453K	1.000	HMMPfam_PI3K_C2,superfamily_C2_CaLB	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A	rs121913273	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	3	178936082	178936082	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1624	p.E542K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PPIAL4G	0	genome.wustl.edu	37	1	143767466	143767466	+	Missense_Mutation	SNP	G	G	A	rs77641628	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	1	143767466	143767466	G	A	SNP	PPIAL4G	NM_001123068.1	human	genbank	58_37c	-1	validated	missense	c.383	p.A128V	0.999	HMMPfam_Pro_isomerase,superfamily_CSA_PPIase	HMMPfam_Pro_isomerase,PatternScan_CSA_PPIASE_1,superfamily_CSA_PPIase	-	no_errors
PREX2	80243	genome.wustl.edu	37	8	68939478	68939478	+	Missense_Mutation	SNP	C	C	T	rs139157434	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	8	68939478	68939478	C	T	SNP	PREX2	NM_024870.2	human	genbank	58_37c	+1	validated	missense	c.463	p.R155W	1.000	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)	"HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain),HMMPfam_DEP,HMMSmart_SM00049,PatternScan_DH_1,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_PH,HMMSmart_SM00233,superfamily_""Winged helix"" DNA-binding domain,superfamily_PH domain-like"	-	no_errors
RNU6-42	0	genome.wustl.edu	37	3	196511870	196511870	+	RNA	SNP	C	C	T	rs10440165	byCluster;byFrequency;by1000genomes	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	3	196511870	196511870	C	T	SNP	RNU6-42	ENST00000384165	human	ensembl	58_37c	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors
SCARNA12	677777	genome.wustl.edu	37	12	7076766	7076766	+	RNA	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	12	7076766	7076766	C	T	SNP	SCARNA12	NR_003010.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.968	-	-	-	no_errors
SNRNP200	23020	genome.wustl.edu	37	2	96964156	96964156	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	96964156	96964156	A	G	SNP	SNRNP200	NM_014014.3	human	genbank	58_37c	-1	reviewed	silent	c.985	p.L329	1.000	NULL	HMMPfam_Helicase_C,HMMSmart_SM00490,HMMPfam_Sec63,HMMPfam_DEAD,HMMSmart_SM00487,HMMSmart_SM00611,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SRRM2	23524	genome.wustl.edu	37	16	2817256	2817261	+	In_Frame_Del	DEL	GCCAGC	GCCAGC	-	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	GCCAGC	GCCAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	16	2817256	2817261	GCCAGC	-	DEL	SRRM2	NM_016333.3	human	genbank	58_37c	+1	validated	in_frame_del	c.6727_6732	p.SA2244in_frame_del	0.999:0.991:0.855:0.855:0.921:0.905	NULL	HMMPfam_cwf21	-	no_errors
TAP1	6890	genome.wustl.edu	37	6	32818088	32818102	+	Splice_Site	DEL	GGTGCTCACACTAGT	GGTGCTCACACTAGT	-	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	GGTGCTCACACTAGT	GGTGCTCACACTAGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	6	32818088	32818102	GGTGCTCACACTAGT	-	DEL	TAP1	NM_000593.5	human	genbank	58_37c	-1	reviewed	splice_site_del	c.1428+7_1428+1	e6-1	0.112:0.143:0.295:0.352:1.000:1.000:1.000:1.000:1.000:0.981:0.971:0.992:0.991:0.998:1.000	-	-	-	no_errors
TBC1D4	9882	genome.wustl.edu	37	13	76055696	76055696	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	13	76055696	76055696	C	T	SNP	TBC1D4	NM_014832.2	human	genbank	58_37c	-1	validated	missense	c.208	p.E70K	0.998	HMMSmart_SM00462,superfamily_PH domain-like	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p,HMMPfam_PID,HMMSmart_SM00462,superfamily_PH domain-like	-	no_errors
TRIM77	390231	genome.wustl.edu	37	11	89447501	89447501	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	11	89447501	89447501	A	T	SNP	TRIM77	XM_002343107.1	human	genbank	58_37c	+1	model	missense	c.649	p.T217S	0.000	NULL	HMMPfam_zf-B_box,HMMSmart_SM00336,HMMSmart_SM00184,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_B-box zinc-binding domain,superfamily_RING/U-box	-	no_errors
TTC27	55622	genome.wustl.edu	37	2	32889484	32889484	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	2	32889484	32889484	A	G	SNP	TTC27	NM_017735.3	human	genbank	58_37c	+1	provisional	missense	c.755	p.D252G	1.000	NULL	HMMPfam_TPR_1,HMMPfam_TPR_2,HMMSmart_TPR,superfamily_SSF48452	-	no_errors
VPS72	6944	genome.wustl.edu	37	1	151162528	151162528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	1	151162528	151162528	C	T	SNP	VPS72	NM_005997.1	human	genbank	58_37c	-1	provisional	missense	c.70	p.E24K	1.000	HMMPfam_YL1	HMMPfam_YL1,HMMPfam_YL1_C	-	no_errors
ZG16	123887	genome.wustl.edu	37	16	29790955	29790955	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	16	29790955	29790955	T	C	SNP	ZG16	NM_152338.2	human	genbank	58_37c	+1	validated	missense	c.185	p.V62A	0.295	HMMPfam_Jacalin,superfamily_Mannose-bd_lectin	HMMPfam_Jacalin,superfamily_Mannose-bd_lectin	-	no_errors
ZMYM2	7750	genome.wustl.edu	37	13	20641448	20641448	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AN-A0XO-01A-11D-A10G-09	TCGA-AN-A0XO-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	f63863f5-cb60-4961-a5b4-ed5ea1fb3dc8	ea2d9f54-744b-4e56-bc97-d9492168db87	13	20641448	20641448	A	G	SNP	ZMYM2	NM_003453.2	human	genbank	58_37c	+1	validated	missense	c.3371	p.H1124R	1.000	NULL	HMMPfam_zf-FCS,HMMSmart_TRASH	-	no_errors
