Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACTB	60	genome.wustl.edu	37	7	5567503	5567503	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	7	5567503	5567503	C	G	SNP	ACTB	NM_001101.3	human	genbank	58_37c	-1	reviewed	missense	c.1004	p.R335P	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
ACTG2	72	genome.wustl.edu	37	2	74146651	74146651	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	2	74146651	74146651	G	T	SNP	ACTG2	NM_001615.3	human	genbank	58_37c	+1	reviewed	missense	c.1080	p.K360N	1.000	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_1,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
BTN2A3	54718	genome.wustl.edu	37	6	26431261	26431261	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	6	26431261	26431261	G	T	SNP	ENSG00000124549	ENST00000297020	human	ensembl	58_37c	+1	known	3_prime_untranslated_region	c.*26431261	NULL	0.001	-	-	-	no_coding_region
C10orf71	118461	genome.wustl.edu	37	10	50532174	50532174	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	10	50532174	50532174	A	G	SNP	C10orf71	NM_001135196.1	human	genbank	58_37c	+1	validated	silent	c.1584	p.R528	0.000	NULL	PatternScan_SUGAR_TRANSPORT_1	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68846121	68846127	+	Frame_Shift_Del	DEL	AGTCACT	AGTCACT	-	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	AGTCACT	AGTCACT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	16	68846121	68846127	AGTCACT	-	DEL	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1092_1098	p.V365fs	0.000:0.964:0.980:0.846:0.436:0.010:0.000	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CPT1C	126129	genome.wustl.edu	37	19	50208555	50208555	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	19	50208555	50208555	G	T	SNP	CPT1C	NM_152359.1	human	genbank	58_37c	+1	provisional	missense	c.964	p.D322Y	1.000	HMMPfam_Carn_acyltransf,superfamily_CoA-dependent acyltransferases	HMMPfam_Carn_acyltransf,PatternScan_ACYLTRANSF_C_1,PatternScan_ACYLTRANSF_C_2,superfamily_CoA-dependent acyltransferases	-	no_errors
ENSG00000245214	0	genome.wustl.edu	37	1	150130828	150130828	+	RNA	SNP	G	G	A	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	1	150130828	150130828	G	A	SNP	ENSG00000245214	ENST00000430673	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.026	-	-	-	no_errors
ERBB2IP	55914	genome.wustl.edu	37	5	65370946	65370946	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	5	65370946	65370946	A	T	SNP	ERBB2IP	NM_018695.2	human	genbank	58_37c	+1	reviewed	missense	c.3728	p.H1243L	1.000	NULL	HMMPfam_PDZ,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
KCNT1	57582	genome.wustl.edu	37	9	138662242	138662242	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	9	138662242	138662242	G	A	SNP	KCNT1	NM_020822.2	human	genbank	58_37c	+1	validated	missense	c.1718	p.R573H	1.000	HMMPfam_BK_channel_a,superfamily_NAD(P)-bd	HMMPfam_BK_channel_a,HMMPfam_Ion_trans_2,superfamily_NAD(P)-bd,superfamily_SSF81324	-	no_errors
MED23	9439	genome.wustl.edu	37	6	131914256	131914268	+	Frame_Shift_Del	DEL	CTCATTGAATCTC	CTCATTGAATCTC	-	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	CTCATTGAATCTC	CTCATTGAATCTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	6	131914256	131914268	CTCATTGAATCTC	-	DEL	MED23	NM_004830.2	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.3288_3276	p.W1092fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	NULL	NULL	-	no_errors
MERTK	10461	genome.wustl.edu	37	2	112786351	112786351	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	2	112786351	112786351	C	T	SNP	MERTK	NM_006343.2	human	genbank	58_37c	+1	reviewed	silent	c.2910	p.S970	0.348	NULL	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
SERPINA4	5267	genome.wustl.edu	37	14	95030303	95030303	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	14	95030303	95030303	G	A	SNP	SERPINA4	NM_006215.2	human	genbank	58_37c	+1	provisional	missense	c.484	p.V162I	0.107	HMMPfam_Serpin,HMMSmart_SERPIN,superfamily_Prot_inh_serpin	HMMPfam_Serpin,HMMSmart_SERPIN,PatternScan_SERPIN,superfamily_Prot_inh_serpin	-	no_errors
SRXN1	140809	genome.wustl.edu	37	20	629434	629434	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	20	629434	629434	A	T	SNP	SRXN1	NM_080725.1	human	genbank	58_37c	-1	provisional	missense	c.338	p.I113N	1.000	HMMSmart_SM00470	HMMSmart_SM00470	-	no_errors
STK32B	55351	genome.wustl.edu	37	4	5399971	5399971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	4	5399971	5399971	G	A	SNP	STK32B	NM_018401.1	human	genbank	58_37c	+1	provisional	missense	c.472	p.G158R	0.995	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
SYPL2	284612	genome.wustl.edu	37	1	110020512	110020512	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	1	110020512	110020512	G	A	SNP	SYPL2	NM_001040709.1	human	genbank	58_37c	+1	validated	missense	c.529	p.D177N	1.000	HMMPfam_MARVEL	HMMPfam_MARVEL	-	no_errors
UNC13C	440279	genome.wustl.edu	37	15	54825146	54825146	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	15	54825146	54825146	C	T	SNP	UNC13C	NM_001080534.1	human	genbank	58_37c	+1	provisional	nonsense	c.5578	p.Q1860*	1.000	NULL	HMMPfam_C2,HMMSmart_C2,HMMPfam_C1_1,HMMSmart_C1,PatternScan_ZF_DAG_PE_1,superfamily_C2_CaLB,HMMPfam_DUF1041,HMMPfam_Membr_traf_MHD,superfamily_SSF57889	-	no_errors
ZNF655	79027	genome.wustl.edu	37	7	99161497	99161506	+	Frame_Shift_Del	DEL	CGCCTTCCCA	CGCCTTCCCA	-	novel	unknown	TCGA-AO-A0JJ-01A-11W-A071-09	TCGA-AO-A0JJ-10A-01W-A071-09	CGCCTTCCCA	CGCCTTCCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	812191d1-6711-4efd-8932-c76159b60ffb	a4271b11-cdc6-4a9f-a5bf-0fe7d3b3f52e	7	99161497	99161506	CGCCTTCCCA	-	DEL	ZNF655	NM_001085367.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.361_370	p.R121fs	1.000:1.000:0.998:1.000:1.000:1.000:1.000:1.000:0.997:1.000	HMMSmart_KRAB,superfamily_Krueppel-associated_box	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box	-	no_errors
