Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AACS	65985	genome.wustl.edu	37	12	125576043	125576043	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	125576043	125576043	T	A	SNP	AACS	NM_023928.3	human	genbank	58_37c	+1	validated	missense	c.544	p.S182T	1.000	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
ACTR1A	10121	genome.wustl.edu	37	10	104247996	104247996	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	104247996	104247996	C	T	SNP	ACTR1A	NM_005736.3	human	genbank	58_37c	-1	reviewed	missense	c.226	p.E76K	1.000	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain	HMMPfam_Actin,HMMSmart_SM00268,PatternScan_ACTINS_ACT_LIKE,PatternScan_ACTINS_2,superfamily_Actin-like ATPase domain	-	no_errors
ANKRD30B	374860	genome.wustl.edu	37	18	14803817	14803817	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	18	14803817	14803817	T	G	SNP	ANKRD30B	NM_001145029.1	human	genbank	58_37c	+1	validated	missense	c.2278	p.L760V	0.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
AP2M1	1173	genome.wustl.edu	37	3	183899476	183899489	+	Splice_Site	DEL	GCTTGCAGCGGGAA	GCTTGCAGCGGGAA	-	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	GCTTGCAGCGGGAA	GCTTGCAGCGGGAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	183899476	183899489	GCTTGCAGCGGGAA	-	DEL	AP2M1	NM_004068.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.716_713	p.S239fs	0.000:0.000:0.000:0.005:0.064:0.364:1.000:1.000:0.589:1.000:1.000:0.996:1.000:1.000	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor	HMMPfam_Adap_comp_sub,superfamily_Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor,superfamily_SNARE-like,PatternScan_CLAT_ADAPTOR_M_1,PatternScan_CLAT_ADAPTOR_M_2	-	no_errors
ARHGAP17	55114	genome.wustl.edu	37	16	24979688	24979688	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	24979688	24979688	C	G	SNP	ARHGAP17	NM_001006634.1	human	genbank	58_37c	-1	validated	missense	c.445	p.D149H	1.000	HMMPfam_BAR,HMMSmart_SM00721	HMMPfam_RhoGAP,HMMSmart_SM00324,PatternScan_AA_TRNA_LIGASE_I,HMMPfam_BAR,HMMSmart_SM00721,superfamily_GTPase activation domain GAP	-	no_errors
ARHGEF1	9138	genome.wustl.edu	37	19	42410774	42410774	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	42410774	42410774	T	C	SNP	ARHGEF1	NM_199002.1	human	genbank	58_37c	+1	reviewed	splice_site	c.2700+2	e27+2	0.991	-	-	-	no_errors
ARL6	84100	genome.wustl.edu	37	3	97506865	97506865	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	97506865	97506865	C	A	SNP	ARL6	NM_032146.3	human	genbank	58_37c	+1	reviewed	missense	c.381	p.F127L	1.000	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMSmart_SM00178,HMMSmart_SM00177,HMMPfam_Arf,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ARMC9	80210	genome.wustl.edu	37	2	232156119	232156119	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	232156119	232156119	C	T	SNP	ARMC9	NM_025139.3	human	genbank	58_37c	+1	validated	silent	c.1680	p.I560	1.000	superfamily_ARM-type_fold	HMMSmart_LisH,superfamily_ARM-type_fold	-	no_errors
BMPR2	659	genome.wustl.edu	37	2	203242213	203242213	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	203242213	203242213	C	T	SNP	BMPR2	NM_001204.6	human	genbank	58_37c	+1	reviewed	nonsense	c.16	p.Q6*	0.233	NULL	HMMPfam_Activin_recp,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF57302	-	no_errors
BTN3A1	11119	genome.wustl.edu	37	6	26412970	26412970	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	6	26412970	26412970	A	G	SNP	BTN3A1	NM_194441.2	human	genbank	58_37c	+1	validated	silent	c.1056	p.K352	0.000	NULL	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	-	no_errors
C10orf81	79949	genome.wustl.edu	37	10	115540387	115540387	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	115540387	115540387	C	G	SNP	C10orf81	ENST00000369312	human	ensembl	58_37c	+1	known	missense	c.948	p.I316M	1.000	NULL	NULL	-	no_errors
CARS2	79587	genome.wustl.edu	37	13	111319757	111319759	+	In_Frame_Del	DEL	ATG	ATG	-	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	ATG	ATG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	111319757	111319759	ATG	-	DEL	CARS2	NM_024537.2	human	genbank	58_37c	-1	validated	in_frame_del	c.849_847	p.H283in_frame_del	0.835:1.000:1.000	HMMPfam_tRNA-synt_1e,superfamily_SSF52374	PatternScan_AA_TRNA_LIGASE_I,superfamily_tRNAsyn_1a_bind,HMMPfam_tRNA-synt_1e,superfamily_SSF52374	-	no_errors
CCDC144B	284047	genome.wustl.edu	37	17	18528551	18528551	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	18528551	18528551	G	A	SNP	CCDC144B	NM_182568.3	human	genbank	58_37c	-1	provisional	silent	c.210	p.D70	0.059	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
CEP63	80254	genome.wustl.edu	37	3	134268924	134268924	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	134268924	134268924	A	G	SNP	CEP63	NM_025180.3	human	genbank	58_37c	+1	reviewed	missense	c.1202	p.Q401R	1.000	NULL	NULL	-	no_errors
CPZ	8532	genome.wustl.edu	37	4	8620195	8620195	+	Missense_Mutation	SNP	G	G	A	rs138232433	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	4	8620195	8620195	G	A	SNP	CPZ	NM_001014447.1	human	genbank	58_37c	+1	reviewed	missense	c.1543	p.G515S	1.000	HMMSmart_SM00631,superfamily_Carboxypeptidase regulatory domain	superfamily_Frizzled cysteine-rich domain,HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,superfamily_Carboxypeptidase regulatory domain,HMMPfam_Fz,HMMSmart_SM00063,superfamily_Zn-dependent exopeptidases	-	no_errors
CSPP1	79848	genome.wustl.edu	37	8	68024243	68024243	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	68024243	68024243	A	G	SNP	CSPP1	NM_001077204.1	human	genbank	58_37c	+1	validated	missense	c.1262	p.E421G	1.000	NULL	NULL	-	no_errors
CYP27C1	339761	genome.wustl.edu	37	2	127952909	127952909	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	127952909	127952909	A	G	SNP	CYP27C1	NM_001001665.3	human	genbank	58_37c	-1	reviewed	splice_site	c.719+2	e4+2	1.000	-	-	-	no_errors
DDX26B	203522	genome.wustl.edu	37	X	134713802	134713802	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	X	134713802	134713802	G	C	SNP	DDX26B	NM_182540.4	human	genbank	58_37c	+1	validated	missense	c.2098	p.E700Q	0.008	NULL	PatternScan_DEAD_ATP_HELICASE,superfamily_vWA-like	-	no_errors
DHPS	1725	genome.wustl.edu	37	19	12788192	12788192	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	12788192	12788192	T	G	SNP	DHPS	NM_001930.2	human	genbank	58_37c	-1	reviewed	missense	c.697	p.S233R	1.000	HMMPfam_DS,superfamily_DHS-like NAD/FAD-binding domain	HMMPfam_DS,superfamily_DHS-like NAD/FAD-binding domain	-	no_errors
EIF3I	8668	genome.wustl.edu	37	1	32694340	32694340	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	32694340	32694340	A	G	SNP	EIF3I	NM_003757.2	human	genbank	58_37c	+1	validated	missense	c.652	p.T218A	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ENSG00000216173	0	genome.wustl.edu	37	14	99828629	99828632	+	RNA	DEL	TGTG	TGTG	-	rs146092274	by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	TGTG	TGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	14	99828629	99828632	TGTG	-	DEL	ENSG00000216173	ENST00000401354	human	ensembl	58_37c	+1	novel	rna	NULL	NULL	0.000:0.000:0.000:0.000	-	-	-	no_errors
ENSG00000236421	0	genome.wustl.edu	37	16	15082151	15082151	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	15082151	15082151	G	A	SNP	PDXDC1	NM_015027.2	human	genbank	58_37c	+1	validated	intronic	c.22-9459	e2-9459	1.000	-	-	-	no_errors
ENSG00000246098	0	genome.wustl.edu	37	12	123810015	123810015	+	RNA	SNP	A	A	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	123810015	123810015	A	C	SNP	SBNO1	NM_018183.3	human	genbank	58_37c	-1	validated	intronic	c.1970+34	e14+34	0.309	-	-	-	no_errors
ENSG00000246304	0	genome.wustl.edu	37	5	138729667	138729667	+	RNA	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	5	138729667	138729667	C	G	SNP	SLC23A1	NM_152685.3	human	genbank	58_37c	-1	reviewed	5_prime_flanking_region	c.-10725	NULL	0.007	-	-	-	no_errors
EPHA6	285220	genome.wustl.edu	37	3	97356897	97356897	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	97356897	97356897	G	T	SNP	EPHA6	NM_001080448.2	human	genbank	58_37c	+1	provisional	missense	c.2755	p.D919Y	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)	HMMPfam_Ephrin_lbd,HMMSmart_SM00615,HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,PatternScan_RECEPTOR_TYR_KIN_V_1,PatternScan_RECEPTOR_TYR_KIN_V_2,HMMPfam_SAM_1,HMMSmart_SM00454,HMMSmart_SM00220,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_TYR,superfamily_Fibronectin type III,superfamily_Galactose-binding domain-like,superfamily_Growth factor receptor domain,superfamily_SAM/Pointed domain,superfamily_Protein kinase-like (PK-like),PatternScan_EGF_2,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
GALNT5	11227	genome.wustl.edu	37	2	158152231	158152231	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	158152231	158152231	C	A	SNP	GALNT5	NM_014568.1	human	genbank	58_37c	+1	provisional	missense	c.1798	p.P600T	1.000	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,superfamily_Ricin B-like lectins,PatternScan_ALPHA_2_MACROGLOBULIN,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
HIVEP3	59269	genome.wustl.edu	37	1	41976178	41976178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	41976178	41976178	C	T	SNP	HIVEP3	NM_024503.3	human	genbank	58_37c	-1	validated	missense	c.7165	p.G2389R	0.893	NULL	PatternScan_AIPM_HOMOCIT_SYNTH_1,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
IGSF9B	22997	genome.wustl.edu	37	11	133807856	133807856	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	133807856	133807856	G	T	SNP	IGSF9B	NM_014987.1	human	genbank	58_37c	-1	validated	missense	c.410	p.A137D	1.000	superfamily_SSF48726	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like,HMMPfam_I-set,HMMPfam_V-set,superfamily_SSF48726	-	no_errors
ITGA8	8516	genome.wustl.edu	37	10	15573048	15573048	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	15573048	15573048	C	A	SNP	ITGA8	NM_003638.1	human	genbank	58_37c	-1	provisional	splice_site	c.2982+1	e28+1	0.996	-	-	-	no_errors
ITGAD	3681	genome.wustl.edu	37	16	31425771	31425771	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	31425771	31425771	G	C	SNP	ITGAD	NM_005353.2	human	genbank	58_37c	+1	validated	splice_site	c.1997-1	e17-1	0.961	-	-	-	no_errors
ITGAX	3687	genome.wustl.edu	37	16	31373963	31373963	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	31373963	31373963	G	T	SNP	ITGAX	NM_000887.3	human	genbank	58_37c	+1	reviewed	silent	c.1248	p.G416	0.154	HMMSmart_Int_alpha,superfamily_SSF69318	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
KIAA0907	22889	genome.wustl.edu	37	1	155903461	155903461	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	155903461	155903461	T	C	SNP	KIAA0907	NM_014949.2	human	genbank	58_37c	-1	predicted	missense	c.218	p.K73R	1.000	NULL	superfamily_Eukaryotic type KH-domain (KH-domain type I)	-	no_errors
LAMB4	22798	genome.wustl.edu	37	7	107746436	107746436	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	7	107746436	107746436	C	G	SNP	LAMB4	NM_007356.2	human	genbank	58_37c	-1	validated	missense	c.696	p.K232N	0.970	HMMPfam_Laminin_N,HMMSmart_SM00136	HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Laminin_N,HMMSmart_SM00136,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_EGF/Laminin	-	no_errors
LILRA5	353514	genome.wustl.edu	37	19	54822884	54822884	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	19	54822884	54822884	A	G	SNP	LILRA5	NM_021250.2	human	genbank	58_37c	-1	reviewed	missense	c.512	p.F171S	0.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
LOC283116	283116	genome.wustl.edu	37	11	49053370	49053370	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	49053370	49053370	G	A	SNP	LOC283116	XM_208043.4	human	genbank	58_37c	+1	model	missense	c.219	p.M73I	0.855	superfamily_SSF57850	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,HMMPfam_SPRY,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
LOC401433	401433	genome.wustl.edu	37	7	151074354	151074354	+	RNA	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	7	151074354	151074354	A	G	SNP	LOC401433	XR_017935.3	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.369	-	-	-	no_errors
LOC654780	654780	genome.wustl.edu	37	16	84228613	84228613	+	RNA	DEL	T	T	-	rs66646107	byCluster	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	84228613	84228613	T	-	DEL	LOC654780	XR_040612.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.005	-	-	-	no_errors
LRP2	4036	genome.wustl.edu	37	2	170011097	170011097	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	170011097	170011097	C	G	SNP	LRP2	NM_004525.2	human	genbank	58_37c	-1	reviewed	missense	c.12168	p.L4056F	0.997	superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
LRP2	4036	genome.wustl.edu	37	2	170063488	170063488	+	Missense_Mutation	SNP	C	C	T	rs139303296	byCluster;by1000genomes	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	170063488	170063488	C	T	SNP	LRP2	NM_004525.2	human	genbank	58_37c	-1	reviewed	missense	c.6742	p.V2248I	0.022	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,superfamily_Grow_fac_recept,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
METTL14	57721	genome.wustl.edu	37	4	119609080	119609080	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	4	119609080	119609080	G	C	SNP	METTL14	NM_020961.2	human	genbank	58_37c	+1	provisional	missense	c.69	p.L23F	1.000	NULL	HMMPfam_MT-A70	-	no_errors
MUC5B	727897	genome.wustl.edu	37	11	1264014	1264014	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	1264014	1264014	G	C	SNP	MUC5B	NM_002458.1	human	genbank	58_37c	+1	validated	silent	c.5913	p.L1971	0.000	NULL	HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_Cys_knot,HMMSmart_SM00215,superfamily_PMP inhibitors,HMMPfam_C8,HMMPfam_TIL	-	no_errors
NECAB1	64168	genome.wustl.edu	37	8	91937819	91937819	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	91937819	91937819	G	T	SNP	NECAB1	NM_022351.4	human	genbank	58_37c	+1	validated	missense	c.551	p.S184I	0.997	NULL	HMMSmart_SM00054,HMMPfam_ABM,superfamily_Dimeric alpha beta barrel,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand	-	no_errors
NECAP2	55707	genome.wustl.edu	37	1	16770220	16770220	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	16770220	16770220	G	T	SNP	NECAP2	NM_001145277.1	human	genbank	58_37c	+1	reviewed	missense	c.186	p.R62S	0.990	HMMPfam_DUF1681	HMMPfam_DUF1681	-	no_errors
NEDD9	4739	genome.wustl.edu	37	6	11190312	11190312	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	6	11190312	11190312	T	A	SNP	NEDD9	NM_001142393.1	human	genbank	58_37c	-1	validated	missense	c.1790	p.Q597L	0.133	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_Serine_rich	-	no_errors
NUP88	4927	genome.wustl.edu	37	17	5289552	5289552	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	5289552	5289552	C	G	SNP	NUP88	NM_002532.3	human	genbank	58_37c	-1	reviewed	missense	c.2200	p.D734H	1.000	HMMPfam_Nup88	HMMPfam_Nup88	-	no_errors
OR4A5	81318	genome.wustl.edu	37	11	51411671	51411671	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	51411671	51411671	G	C	SNP	OR4A5	NM_001005272.3	human	genbank	58_37c	-1	validated	missense	c.725	p.T242S	0.001	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_LECTIN_LEGUME_ALPHA,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OR5L2	26338	genome.wustl.edu	37	11	55594925	55594925	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	55594925	55594925	T	G	SNP	OR5L2	NM_001004739.1	human	genbank	58_37c	+1	provisional	missense	c.231	p.I77M	0.044	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
OXGR1	27199	genome.wustl.edu	37	13	97639673	97639673	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	97639673	97639673	T	C	SNP	OXGR1	NM_080818.3	human	genbank	58_37c	-1	reviewed	missense	c.341	p.H114R	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PARP8	79668	genome.wustl.edu	37	5	50055554	50055554	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	5	50055554	50055554	A	T	SNP	PARP8	NM_024615.3	human	genbank	58_37c	+1	validated	nonsense	c.262	p.R88*	1.000	NULL	HMMPfam_PARP,superfamily_ADP-ribosylation	-	no_errors
PDE2A	5138	genome.wustl.edu	37	11	72300269	72300269	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	72300269	72300269	C	G	SNP	PDE2A	NM_002599.3	human	genbank	58_37c	-1	validated	missense	c.889	p.G297R	1.000	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_SM00065,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like,superfamily_GAF domain-like	-	no_errors
PEAR1	375033	genome.wustl.edu	37	1	156883814	156883814	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	156883814	156883814	T	A	SNP	PEAR1	NM_001080471.1	human	genbank	58_37c	+1	provisional	missense	c.2884	p.W962R	0.084	NULL	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,HMMSmart_EGF,superfamily_Grow_fac_recept,HMMPfam_EMI,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2	-	no_errors
PHKB	5257	genome.wustl.edu	37	16	47531346	47531346	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	47531346	47531346	C	T	SNP	PHKB	NM_000293.2	human	genbank	58_37c	+1	reviewed	missense	c.113	p.P38L	0.992	HMMPfam_PHK_AB	HMMPfam_PHK_AB,superfamily_Six-hairpin glycosidases	-	no_errors
PLS1	5357	genome.wustl.edu	37	3	142403210	142403210	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	142403210	142403210	C	T	SNP	PLS1	NM_001145319.1	human	genbank	58_37c	+1	reviewed	silent	c.861	p.T287	0.905	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMSmart_EFh,superfamily_Calponin-homology,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_SSF47473	-	no_errors
PRR23B	0	genome.wustl.edu	37	3	138738845	138738845	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	3	138738845	138738845	C	T	SNP	PRR23B	NM_001013650.2	human	genbank	58_37c	-1	validated	missense	c.659	p.R220H	0.000	HMMPfam_DUF2476	HMMPfam_DUF2476	-	no_errors
PSMA5	5686	genome.wustl.edu	37	1	109952632	109952632	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	109952632	109952632	A	C	SNP	PSMA5	NM_002790.2	human	genbank	58_37c	-1	reviewed	missense	c.566	p.M189R	1.000	HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	HMMPfam_Proteasome_A_N,PatternScan_PROTEASOME_A,HMMPfam_Proteasome,superfamily_N-terminal nucleophile aminohydrolases (Ntn hydrolases)	-	no_errors
PTGIS	5740	genome.wustl.edu	37	20	48124493	48124493	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	20	48124493	48124493	T	A	SNP	PTGIS	NM_000961.3	human	genbank	58_37c	-1	reviewed	missense	c.1467	p.E489D	0.056	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
PTPN14	5784	genome.wustl.edu	37	1	214557148	214557148	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	214557148	214557148	G	C	SNP	PTPN14	NM_005401.4	human	genbank	58_37c	-1	reviewed	missense	c.2050	p.H684D	0.989	NULL	HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
RIMBP2	23504	genome.wustl.edu	37	12	130927134	130927134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	12	130927134	130927134	G	A	SNP	RIMBP2	NM_015347.4	human	genbank	58_37c	-1	validated	missense	c.712	p.R238W	0.780	superfamily_SH3-domain	HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_SH3_2	-	no_errors
RSPO2	340419	genome.wustl.edu	37	8	109001415	109001415	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	8	109001415	109001415	C	A	SNP	RSPO2	NM_178565.4	human	genbank	58_37c	-1	validated	missense	c.152	p.G51V	1.000	HMMSmart_SM00261,superfamily_Growth factor receptor domain	HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMSmart_SM00261,superfamily_Growth factor receptor domain	-	no_errors
RTN4RL2	349667	genome.wustl.edu	37	11	57235332	57235332	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	11	57235332	57235332	C	T	SNP	RTN4RL2	NM_178570.1	human	genbank	58_37c	+1	provisional	silent	c.282	p.L94	1.000	superfamily_SSF52058	HMMSmart_LRRNT,HMMSmart_LRRCT,HMMPfam_LRR_1,HMMSmart_LRR_TYP,superfamily_SSF52058	-	no_errors
SGK269	79834	genome.wustl.edu	37	15	77406585	77406585	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	15	77406585	77406585	G	A	SNP	SGK269	NM_024776.2	human	genbank	58_37c	-1	validated	silent	c.5154	p.S1718	1.000	NULL	PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP	-	no_errors
SIPA1L2	57568	genome.wustl.edu	37	1	232650538	232650538	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	232650538	232650538	T	C	SNP	SIPA1L2	NM_020808.3	human	genbank	58_37c	-1	validated	missense	c.548	p.N183S	1.000	NULL	HMMPfam_Rap_GAP,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_Rap/Ran-GAP (Pfam 02145)	-	no_errors
SLC45A3	85414	genome.wustl.edu	37	1	205628387	205628387	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	205628387	205628387	C	G	SNP	SLC45A3	NM_033102.2	human	genbank	58_37c	-1	validated	missense	c.1637	p.S546T	0.826	NULL	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SPEG	10290	genome.wustl.edu	37	2	220333886	220333886	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	2	220333886	220333886	T	A	SNP	SPEG	NM_005876.4	human	genbank	58_37c	+1	validated	missense	c.3500	p.L1167Q	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,PatternScan_PROTEIN_KINASE_ST,superfamily_Fibronectin type III,superfamily_Protein kinase-like (PK-like),HMMPfam_I-set,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_Immunoglobulin	-	no_errors
SPG20	23111	genome.wustl.edu	37	13	36886528	36886528	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	13	36886528	36886528	A	G	SNP	SPG20	NM_001142294.1	human	genbank	58_37c	-1	reviewed	missense	c.1570	p.S524P	1.000	NULL	HMMPfam_MIT,HMMSmart_MIT	-	no_errors
SSPO	23145	genome.wustl.edu	37	7	149500337	149500337	+	Nonsense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	7	149500337	149500337	T	G	SNP	SSPO	ENST00000378016	human	ensembl	58_37c	+1	known	nonsense	c.7863	p.Y2621*	0.108	superfamily_Serine proterase inhibitors	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_Ldl_recept_a,HMMSmart_SM00192,PatternScan_LDLRA_1,superfamily_LDL receptor-like module,PatternScan_BPTI_KUNITZ_1,superfamily_Serine proterase inhibitors,HMMSmart_SM00215,superfamily_PMP inhibitors,superfamily_Galactose-binding domain-like,PatternScan_EGF_1,HMMPfam_C8,PatternScan_GLYCO_HORMONE_BETA_1,HMMPfam_TIL	-	no_errors
SYT17	51760	genome.wustl.edu	37	16	19278387	19278387	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	16	19278387	19278387	G	T	SNP	SYT17	NM_016524.2	human	genbank	58_37c	+1	validated	nonsense	c.1414	p.E472*	1.000	NULL	HMMPfam_C2,HMMSmart_C2,superfamily_C2_CaLB	-	no_errors
TMUB2	79089	genome.wustl.edu	37	17	42265092	42265092	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	42265092	42265092	C	G	SNP	TMUB2	NM_001076674.1	human	genbank	58_37c	+1	validated	missense	c.16	p.L6V	0.999	NULL	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578190	7578190	+	Missense_Mutation	SNP	T	T	C	rs121912666	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	7578190	7578190	T	C	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.659	p.Y220C	0.998	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
UAP1	6675	genome.wustl.edu	37	1	162557384	162557384	+	Missense_Mutation	SNP	C	C	G	rs140592976	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	1	162557384	162557384	C	G	SNP	UAP1	NM_003115.4	human	genbank	58_37c	+1	validated	missense	c.954	p.D318E	0.996	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_UDPGP,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
USP36	57602	genome.wustl.edu	37	17	76803593	76803593	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	17	76803593	76803593	C	T	SNP	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	silent	c.1533	p.S511	0.012	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
ZNF169	169841	genome.wustl.edu	37	9	97063282	97063282	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	9	97063282	97063282	C	A	SNP	ZNF169	NM_194320.2	human	genbank	58_37c	+1	validated	missense	c.1442	p.T481K	0.687	superfamily_SSF57667	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF37A	7587	genome.wustl.edu	37	10	38407207	38407207	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	10	38407207	38407207	A	G	SNP	ZNF37A	NM_001007094.2	human	genbank	58_37c	+1	validated	silent	c.1128	p.T376	0.975	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZSWIM3	140831	genome.wustl.edu	37	20	44506036	44506036	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AR-A0U1-01A-11D-A10Y-09	TCGA-AR-A0U1-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	265ceec6-e9a8-499e-adf6-0c18c598532e	30329e31-a2b2-4c2e-8291-f775e3c9fa14	20	44506036	44506036	A	G	SNP	ZSWIM3	NM_080752.2	human	genbank	58_37c	+1	validated	missense	c.839	p.K280R	1.000	HMMPfam_MULE	HMMSmart_ZnF_PMZ,HMMPfam_SWIM,HMMPfam_MULE	-	no_errors
