Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
PLEKHG5	57449	genome.wustl.edu	37	1	6529183	6529185	+	In_Frame_Del	DEL	TCC	TCC	-	rs113541584	byCluster;by1000genomes	TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	TCC	TCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_198681.2	-1	reviewed	p.E800in_frame_del	0.152:0.271:0.391	-	-	-	-	-	-	-	-	-	NULL
C1QB	713	genome.wustl.edu	37	1	22987360	22987360	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_000491.3	+1	reviewed	p.G81	0.024	27	0%	29	62.1%	-	-	-	-	-	HMMPfam_Collagen
ADPRHL2	54936	genome.wustl.edu	37	1	36557393	36557393	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_017825.2	+1	reviewed	p.S161	0.993	47	0%	63	15.9%	-	-	-	-	-	HMMPfam_ADP_ribosyl_GH,superfamily_Ribosyl_crysJ1
ZMPSTE24	10269	genome.wustl.edu	37	1	40737662	40737662	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_005857.3	+1	reviewed	p.A242S	1.000	138	0%	194	49%	-	-	benign(0.31)	deleterious(0.03)	neutral(0.461)	HMMPfam_Peptidase_M48
TIE1	7075	genome.wustl.edu	37	1	43779579	43779579	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_005424.2	+1	provisional	p.L783	0.961	23	0%	51	43.1%	-	-	-	-	-	NULL
CD1C	911	genome.wustl.edu	37	1	158261021	158261021	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001765.2	+1	reviewed	p.L53	0.037	73	0%	117	12%	-	-	-	-	-	HMMPfam_MHC_I,superfamily_MHC_I/II-like_Ag-recog
SPTA1	6708	genome.wustl.edu	37	1	158614070	158614070	+	Silent	SNP	G	G	A	rs189877287	by1000genomes	TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_003126.2	-1	reviewed	p.D1437	0.945	131	0%	140	32.1%	-	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR10J3	441911	genome.wustl.edu	37	1	159283976	159283976	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001004467.1	-1	provisional	p.I158M	0.007	62	0%	104	14.4%	-	-	benign(0.046)	tolerated(0.43)	neutral(0.016)	HMMPfam_7tm_1,superfamily_SSF81321
UFC1	51506	genome.wustl.edu	37	1	161128232	161128232	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_016406.3	+1	validated	p.D152H	1.000	85	0%	120	38.3%	-	-	probably_damaging(0.974)	tolerated(0.58)	neutral(0.421)	HMMPfam_UFC1
NAV1	89796	genome.wustl.edu	37	1	201762944	201762944	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_020443.4	+1	reviewed	p.Q1116E	1.000	111	0%	148	31.8%	-	-	benign(0.354)	deleterious(0.01)	deleterious(0.518)	NULL
RYR2	6262	genome.wustl.edu	37	1	237666725	237666725	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001035.2	+1	reviewed	p.T845S	0.002	68	0%	67	17.9%	-	-	benign(0)	-	-	NULL
OR2M7	391196	genome.wustl.edu	37	1	248487776	248487776	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001004691.1	-1	provisional	p.L32P	0.032	521	0%	413	11.4%	-	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_SSF81321
OR2T4	127074	genome.wustl.edu	37	1	248525914	248525914	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001004696.1	+1	provisional	p.Q344H	0.006	90	0%	118	10.2%	-	-	possibly_damaging(0.746)	deleterious(0)	deleterious(0.719)	NULL
NT5C1B	93034	genome.wustl.edu	37	2	18757609	18757609	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	ENST00000418427	-1	known	p.W105R	0.060	69	0%	57	10.5%	-	-	-	-	-	HMMPfam_5-nucleotidase
APOB	338	genome.wustl.edu	37	2	21234158	21234158	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_000384.2	-1	reviewed	p.G1861V	0.119	133	0%	142	16.2%	-	-	probably_damaging(0.979)	-	-	NULL
EML6	400954	genome.wustl.edu	37	2	55098674	55098674	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001039753.2	+1	validated	p.Q759L	1.000	205	0%	188	13.3%	-	-	possibly_damaging(0.451)	tolerated(0.47)	neutral(0.159)	superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase
ADD2	119	genome.wustl.edu	37	2	70890681	70890681	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001617.3	-1	reviewed	p.S686L	1.000	134	0%	143	53.8%	-	-	probably_damaging(0.963)	tolerated(0.13)	deleterious(0.658)	NULL
COX5B	1329	genome.wustl.edu	37	2	98263847	98263847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001862.2	+1	reviewed	p.T73I	1.000	155	0%	179	12.8%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_COX5B,superfamily_Rubredoxin-like
MARCO	8685	genome.wustl.edu	37	2	119727791	119727791	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_006770.3	+1	reviewed	p.H101N	0.000	40	0%	46	43.5%	-	-	benign(0.053)	tolerated(0.75)	neutral(0.005)	NULL
MGAT5	4249	genome.wustl.edu	37	2	135012073	135012073	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_002410.3	+1	validated	p.T33	1.000	141	0%	135	28.1%	-	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179501285	179501285	+	Silent	SNP	A	A	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	ENST00000356127	-1	known	p.G11155	0.119	137	0.7%	163	49.1%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179669338	179669338	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_133379.3	-1	reviewed	p.P11Q	1.000	85	0%	97	55.7%	-	-	possibly_damaging(0.526)	deleterious(0.02)	deleterious(0.560)	HMMPfam_I-set,superfamily_SSF48726
WDR75	84128	genome.wustl.edu	37	2	190332311	190332311	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_032168.1	+1	provisional	p.T522I	1.000	147	0%	267	37.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_WD40,superfamily_WD40_like
MFSD6	54842	genome.wustl.edu	37	2	191362210	191362210	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_017694.3	+1	validated	p.V646A	1.000	154	0%	260	30.8%	-	-	possibly_damaging(0.942)	deleterious(0.02)	deleterious(0.770)	NULL
ACSL3	2181	genome.wustl.edu	37	2	223773753	223773753	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_004457.3	+1	reviewed	p.L88S	0.972	133	0%	190	30.5%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF56801
ZFYVE20	64145	genome.wustl.edu	37	3	15131936	15131936	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_022340.2	-1	validated	p.D87H	1.000	158	0%	167	16.2%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
DAZL	1618	genome.wustl.edu	37	3	16639595	16639595	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001351.2	-1	reviewed	p.G81R	1.000	137	0%	114	18.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
TRIM71	131405	genome.wustl.edu	37	3	32915422	32915422	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001039111.1	+1	provisional	p.R322Q	0.999	44	0%	48	31.2%	-	-	possibly_damaging(0.934)	tolerated(0.1)	deleterious(0.666)	NULL
TRAK1	22906	genome.wustl.edu	37	3	42251736	42251736	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_014965.3	+1	validated	p.R683fs	1.000	-	-	-	-	-	-	-	-	-	NULL
MAP4	4134	genome.wustl.edu	37	3	47908735	47908735	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_002375.4	-1	reviewed	e14+1	1.000	121	0%	97	12.4%	-	-	-	-	-	-
FAM19A1	407738	genome.wustl.edu	37	3	68055862	68055862	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_213609.2	+1	reviewed	p.F31	1.000	199	0%	97	22.7%	-	-	-	-	-	NULL
CHCHD6	84303	genome.wustl.edu	37	3	126571530	126571530	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_032343.1	+1	provisional	p.R151P	0.224	107	0%	90	22.2%	-	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_DUF737
SHOX2	6474	genome.wustl.edu	37	3	157820570	157820570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_006884.3	-1	reviewed	p.Q151P	1.000	149	0%	153	31.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
TPRG1	285386	genome.wustl.edu	37	3	188925281	188925281	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_198485.3	+1	validated	p.P36	0.001	218	0%	274	21.2%	-	-	-	-	-	NULL
NKX6-1	4825	genome.wustl.edu	37	4	85416881	85416881	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_006168.2	-1	validated	p.G263R	1.000	128	0%	110	21.8%	-	-	unknown(0)	deleterious(0.04)	-	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
SLC10A6	345274	genome.wustl.edu	37	4	87770134	87770134	+	Silent	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_197965.2	-1	validated	p.L45	0.995	31	0%	31	12.9%	-	-	-	-	-	HMMPfam_SBF
FHDC1	85462	genome.wustl.edu	37	4	153881964	153881964	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_033393.2	+1	validated	p.T273I	0.006	150	0%	114	41.2%	-	-	benign(0.06)	deleterious(0.05)	neutral(0.349)	HMMSmart_FH2,HMMPfam_FH2,superfamily_FH2_actin_bd
SLC1A3	6507	genome.wustl.edu	37	5	36608665	36608665	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_004172.4	+1	reviewed	p.R47L	1.000	105	0%	91	16.5%	-	-	probably_damaging(0.986)	deleterious(0.01)	deleterious(0.840)	NULL
NLN	57486	genome.wustl.edu	37	5	65088393	65088393	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_020726.3	+1	provisional	p.V480L	0.000	105	0%	79	15.2%	-	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Peptidase_M3,superfamily_SSF55486
PIK3R1	5295	genome.wustl.edu	37	5	67589599	67589613	+	In_Frame_Del	DEL	TCAGTTTCAAGAAAA	TCAGTTTCAAGAAAA	-	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	TCAGTTTCAAGAAAA	TCAGTTTCAAGAAAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_181523.1	+1	reviewed	p.QFQEK455in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80513215	80513228	+	Frame_Shift_Del	DEL	ACAGACCTGGCATT	ACAGACCTGGCATT	-	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	ACAGACCTGGCATT	ACAGACCTGGCATT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_006909.1	+1	validated	p.T1159fs	1.000:1.000:0.884:1.000:1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.905:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF,PatternScan_RASGEF
NREP	9315	genome.wustl.edu	37	5	111311045	111311045	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001142475.1	-1	validated	p.R21G	0.000	201	0%	178	12.9%	-	-	possibly_damaging(0.626)	tolerated(0.46)	neutral(0.230)	NULL
KCNN2	3781	genome.wustl.edu	37	5	113822771	113822771	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_021614.2	+1	reviewed	p.L427F	1.000	120	0%	111	24.3%	-	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_CaMBD,superfamily_CaM_bd,superfamily_SSF81324
RREB1	6239	genome.wustl.edu	37	6	7248872	7248872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001003699.3	+1	reviewed	p.E1634K	0.997	50	0%	59	22%	-	-	benign(0.093)	deleterious(0.02)	neutral(0.390)	NULL
GNL1	2794	genome.wustl.edu	37	6	30514092	30514092	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_005275.3	-1	validated	e12-2	1.000	47	0%	46	30.4%	-	-	-	-	-	-
CPNE5	57699	genome.wustl.edu	37	6	36759825	36759825	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_020939.1	-1	reviewed	p.E171D	1.000	94	0%	93	36.6%	-	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	HMMSmart_C2,superfamily_C2_CaLB
GPR110	266977	genome.wustl.edu	37	6	46979901	46979901	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_153840.2	-1	validated	p.E320K	0.041	138	0%	166	42.8%	-	-	probably_damaging(0.996)	tolerated(0.62)	neutral(0.466)	NULL
BAI3	577	genome.wustl.edu	37	6	69665940	69665940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001704.2	+1	reviewed	p.S407N	1.000	128	0%	139	10.8%	-	-	possibly_damaging(0.694)	tolerated(0.17)	neutral(0.308)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
NCOA7	135112	genome.wustl.edu	37	6	126136541	126136541	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_181782.3	+1	validated	p.Y14F	1.000	136	0%	167	24%	-	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
SHPRH	257218	genome.wustl.edu	37	6	146256575	146256575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001042683.2	-1	validated	p.L858I	1.000	63	0%	58	13.8%	-	-	probably_damaging(0.978)	tolerated(0.06)	deleterious(0.743)	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
GRM1	2911	genome.wustl.edu	37	6	146350754	146350754	+	Missense_Mutation	SNP	C	C	G	rs12190109	byCluster	TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_000838.3	+1	reviewed	p.S34C	0.846	61	0%	68	11.8%	-	-	possibly_damaging(0.942)	deleterious(0.04)	deleterious(0.736)	NULL
PLEKHG1	57480	genome.wustl.edu	37	6	151151764	151151764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001029884.1	+1	provisional	p.S506F	0.726	59	0%	61	24.6%	-	-	benign(0.135)	deleterious(0.05)	neutral(0.357)	NULL
PKD1L1	168507	genome.wustl.edu	37	7	47921619	47921619	+	Silent	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_138295.2	-1	reviewed	p.G1110	0.999	38	0%	71	21.1%	-	-	-	-	-	NULL
ZNF273	10793	genome.wustl.edu	37	7	64378580	64378580	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_021148.2	+1	reviewed	p.A79T	0.672	297	0%	217	30%	-	-	benign(0.017)	tolerated(0.29)	neutral(0.030)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ADAM22	53616	genome.wustl.edu	37	7	87810896	87810896	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_021723.2	+1	reviewed	p.R829*	0.888	102	0%	54	64.8%	-	-	-	-	-	NULL
SAMD9L	219285	genome.wustl.edu	37	7	92760925	92760925	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_152703.2	-1	validated	p.S1454P	0.043	67	0%	48	45.8%	-	-	probably_damaging(0.989)	tolerated(0.08)	deleterious(0.740)	NULL
COPS6	10980	genome.wustl.edu	37	7	99689085	99689085	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_006833.4	+1	reviewed	p.A262G	0.995	107	0%	118	41.5%	-	-	benign(0.002)	tolerated(0.1)	neutral(0.286)	NULL
STAG3	10734	genome.wustl.edu	37	7	99797903	99797903	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_012447.2	+1	validated	p.V574	0.876	87	0%	86	31.4%	-	-	-	-	-	superfamily_ARM repeat
LRRC61	65999	genome.wustl.edu	37	7	150034209	150034209	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001142928.1	+1	validated	p.L87V	0.962	14	0.000	8	0.875	-	-	benign(0.002)	tolerated(0.11)	neutral(0.272)	HMMPfam_LRR_1,superfamily_SSF52058
RB1CC1	9821	genome.wustl.edu	37	8	53569733	53569733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_014781.4	-1	reviewed	p.E886K	1.000	35	0%	44	47.7%	-	-	benign(0.013)	deleterious(0.04)	neutral(0.349)	NULL
SLC7A13	157724	genome.wustl.edu	37	8	87235330	87235330	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_138817.2	-1	validated	p.E230Q	0.731	88	0%	74	18.9%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AA_permease
GNE	10020	genome.wustl.edu	37	9	36249285	36249285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001128227.1	-1	reviewed	p.S54F	1.000	127	0%	178	12.4%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF53756
BAAT	570	genome.wustl.edu	37	9	104124839	104124839	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001127610.1	-1	reviewed	p.T376	0.000	170	0%	109	77.1%	-	-	-	-	-	HMMPfam_BAAT_C,superfamily_SSF53474
UCK1	83549	genome.wustl.edu	37	9	134406046	134406046	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	ENST00000372211	-1	known	p.L37P	0.000	39	0%	25	28%	-	-	benign(0.23)	tolerated(0.05)	neutral(0.368)	NULL
MRC1	4360	genome.wustl.edu	37	10	17949670	17949670	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001009567.1	+1	reviewed	p.I1345T	0.292	319	0%	336	28.6%	-	-	benign(0)	tolerated(0.61)	neutral(0.004)	HMMPfam_Lectin_C,HMMSmart_SM00034,superfamily_C-type lectin-like,PatternScan_C_TYPE_LECTIN_1
PRKG1	5592	genome.wustl.edu	37	10	53822348	53822348	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_006258.2	+1	validated	p.T298S	1.000	87	0%	67	25.4%	-	-	benign(0)	tolerated(0.29)	neutral(0.029)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
GRID1	2894	genome.wustl.edu	37	10	87614350	87614350	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_017551.2	-1	reviewed	p.G379A	1.000	97	0%	71	12.7%	-	-	benign(0.301)	deleterious(0)	deleterious(0.537)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
MRGPRX4	117196	genome.wustl.edu	37	11	18194947	18194947	+	Silent	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_054032.3	+1	validated	p.V48	0.034	100	0%	69	11.6%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
AMBRA1	55626	genome.wustl.edu	37	11	46564363	46564373	+	Frame_Shift_Del	DEL	GGCTAGACAGA	GGCTAGACAGA	-	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	GGCTAGACAGA	GGCTAGACAGA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_017749.2	-1	validated	p.L309fs	1.000:1.000:1.000:0.992:0.975:1.000:0.996:0.988:0.979:0.772:0.765	-	-	-	-	-	-	-	-	-	NULL
EHD1	10938	genome.wustl.edu	37	11	64645741	64645741	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_006795.2	-1	reviewed	p.Q66*	1.000	51	0%	47	27.7%	-	-	-	-	-	HMMPfam_Dynamin_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
SIDT2	51092	genome.wustl.edu	37	11	117066728	117066728	+	Silent	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001040455.1	+1	validated	p.L815	1.000	89	0%	133	27.1%	-	-	-	-	-	NULL
BACE1	23621	genome.wustl.edu	37	11	117161767	117161767	+	Splice_Site	SNP	T	T	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_012104.3	-1	reviewed	e7-2	1.000	55	0%	67	14.9%	-	-	-	-	-	-
SLC37A2	219855	genome.wustl.edu	37	11	124953754	124953754	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_198277.2	+1	validated	p.F340	0.827	110	0%	94	46.8%	-	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
GLB1L2	89944	genome.wustl.edu	37	11	134240186	134240186	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_138342.3	+1	validated	e12-1	0.546	140	0%	121	37.2%	-	-	-	-	-	-
NCKAP1L	3071	genome.wustl.edu	37	12	54914482	54914482	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_005337.4	+1	reviewed	p.H544Y	1.000	186	0%	211	32.2%	-	-	benign(0)	tolerated(1)	-	HMMPfam_Nckap1
KIF5A	3798	genome.wustl.edu	37	12	57961359	57961359	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_004984.2	+1	reviewed	p.L224	0.998	99	0%	120	16.7%	-	-	-	-	-	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
OAS2	4939	genome.wustl.edu	37	12	113440810	113440810	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_016817.2	+1	reviewed	p.C361Y	0.001	141	0%	129	38.8%	-	-	benign(0)	tolerated(0.84)	neutral(0.001)	superfamily_Nucleotidyltransferase
TESC	54997	genome.wustl.edu	37	12	117484389	117484389	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_017899.3	-1	validated	p.A218V	0.998	6	0.000	17	0.824	-	-	benign(0.159)	tolerated(0.13)	neutral(0.267)	superfamily_EF-hand
KSR2	283455	genome.wustl.edu	37	12	118293328	118293328	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_173598.4	-1	validated	p.Q97P	1.000	75	0%	66	10.6%	-	-	benign(0.053)	deleterious(0.01)	neutral(0.409)	NULL
CIT	11113	genome.wustl.edu	37	12	120148139	120148139	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_007174.1	-1	validated	p.N1621S	1.000	71	0%	69	78.3%	-	-	possibly_damaging(0.932)	tolerated(0.33)	neutral(0.403)	HMMPfam_CNH,HMMSmart_SM00036
DOCK9	23348	genome.wustl.edu	37	13	99462436	99462436	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	ENST00000357329	-1	known	p.R1748Q	1.000	134	0%	134	14.9%	-	-	probably_damaging(0.999)	tolerated(0.42)	deleterious(0.504)	NULL
OR4N2	390429	genome.wustl.edu	37	14	20296069	20296069	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001004723.1	+1	provisional	p.V154	0.000	278	0%	103	34%	-	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
DDHD1	80821	genome.wustl.edu	37	14	53619480	53619481	+	In_Frame_Ins	INS	-	-	GCCGCC	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_030637.2	-1	validated	p.112in_frame_insGG	0.234:0.997	-	-	-	-	-	-	-	-	-	NULL
PLEKHG3	26030	genome.wustl.edu	37	14	65210121	65210121	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_015549.1	+1	validated	p.P1064	0.159	13	0%	17	70.6%	-	-	-	-	-	NULL
TUBGCP5	114791	genome.wustl.edu	37	15	22867014	22867014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001102610.1	+1	validated	p.G844V	1.000	191	0%	262	12.6%	-	-	benign(0.174)	tolerated(0.18)	neutral(0.072)	HMMPfam_Spc97_Spc98
NUSAP1	51203	genome.wustl.edu	37	15	41669443	41669443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_016359.3	+1	validated	p.Q391H	0.027	59	0%	66	22.7%	-	-	possibly_damaging(0.509)	deleterious(0.03)	deleterious(0.535)	NULL
WDR72	256764	genome.wustl.edu	37	15	53992110	53992110	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_182758.2	-1	validated	p.C534*	1.000	118	0%	65	38.5%	-	-	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like
PDE8A	5151	genome.wustl.edu	37	15	85652331	85652331	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_002605.2	+1	validated	p.V362I	1.000	90	0%	82	22%	-	-	benign(0.155)	deleterious(0.01)	neutral(0.419)	NULL
THOC6	79228	genome.wustl.edu	37	16	3077048	3077048	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_024339.3	+1	validated	p.C225R	1.000	211	0%	215	27%	-	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_WD40 repeat-like
CNOT1	23019	genome.wustl.edu	37	16	58577621	58577621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_016284.3	-1	validated	p.H1442Y	1.000	93	0%	97	15.5%	-	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
KCNG4	93107	genome.wustl.edu	37	16	84270874	84270874	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_172347.1	-1	reviewed	p.P73R	1.000	11	0%	14	35.7%	-	-	probably_damaging(1)	tolerated(0.55)	deleterious(0.507)	HMMPfam_K_tetra,superfamily_POZ domain
GP1BA	2811	genome.wustl.edu	37	17	4837281	4837281	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_000173.5	+1	reviewed	p.S448I	0.000	63	0%	77	28.6%	-	-	unknown(0)	deleterious(0)	-	NULL
KIAA0753	9851	genome.wustl.edu	37	17	6503712	6503712	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_014804.2	-1	validated	p.L692	0.982	97	0%	98	19.4%	-	-	-	-	-	NULL
GPS2	2874	genome.wustl.edu	37	17	7216551	7216551	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_004489.4	-1	reviewed	p.Q262*	1.000	83	0%	70	72.9%	-	-	-	-	-	NULL
TP53	7157	genome.wustl.edu	37	17	7577536	7577536	+	Missense_Mutation	SNP	T	T	A	rs67185453		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_000546.4	-1	reviewed	p.R249W	0.998	59	0%	44	77.3%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53
RCVRN	5957	genome.wustl.edu	37	17	9804349	9804349	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_002903.2	-1	reviewed	p.K150N	0.990	102	0%	111	11.7%	-	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_EF-hand
RAI1	10743	genome.wustl.edu	37	17	17700499	17700499	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_030665.3	+1	reviewed	p.M1413V	0.000	23	0%	20	55%	-	-	benign(0)	tolerated(0.94)	-	NULL
NEK8	284086	genome.wustl.edu	37	17	27065214	27065214	+	Silent	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_178170.2	+1	reviewed	p.V391	1.000	43	0%	36	80.6%	-	-	unknown(0)	-	-	superfamily_RCC1/BLIP-II
ATAD5	79915	genome.wustl.edu	37	17	29162452	29162452	+	Silent	SNP	T	T	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_024857.3	+1	provisional	p.G451	0.001	30	0%	44	72.7%	-	-	-	-	-	NULL
PHB	5245	genome.wustl.edu	37	17	47486458	47486458	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_002634.2	-1	reviewed	p.D152E	0.848	27	0%	50	44%	-	-	benign(0.002)	tolerated(0.96)	-	HMMPfam_Band_7,HMMSmart_SM00244
TMC8	147138	genome.wustl.edu	37	17	76129995	76129995	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_152468.4	+1	reviewed	p.A244T	0.001	22	0%	26	53.8%	-	-	benign(0.001)	tolerated(0.39)	neutral(0.016)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14851767	14851767	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001145029.1	+1	validated	p.T1156R	0.998	41	0%	28	21.4%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
ATP8B1	5205	genome.wustl.edu	37	18	55398888	55398899	+	In_Frame_Del	DEL	GCTTCCCTGTTG	GCTTCCCTGTTG	-	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	GCTTCCCTGTTG	GCTTCCCTGTTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_005603.4	-1	reviewed	p.NREA48in_frame_del	0.386:0.698:0.789:0.957:0.995:0.996:0.995:1.000:1.000:1.000:1.000:0.966	-	-	-	-	-	-	-	-	-	superfamily_SSF81665
CCBE1	147372	genome.wustl.edu	37	18	57134033	57134033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_133459.3	-1	reviewed	p.G164V	1.000	67	0%	47	23.4%	-	-	probably_damaging(1)	-	-	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_EGF/Laminin
BSG	682	genome.wustl.edu	37	19	581444	581444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001728.2	+1	reviewed	p.G308S	0.995	15	0%	21	28.6%	-	-	possibly_damaging(0.753)	tolerated(0.12)	deleterious(0.537)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
PRAM1	84106	genome.wustl.edu	37	19	8564070	8564070	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_032152.3	-1	reviewed	p.E208Q	0.000	33	0%	37	13.5%	-	-	benign(0.013)	tolerated(0.39)	neutral(0.017)	NULL
CYP4F22	126410	genome.wustl.edu	37	19	15661569	15661569	+	Splice_Site	SNP	T	T	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_173483.3	+1	reviewed	e11+2	1.000	79	0%	102	26.5%	-	-	-	-	-	-
SLC5A5	6528	genome.wustl.edu	37	19	17991703	17991703	+	Silent	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_000453.2	+1	reviewed	p.F333	0.006	85	0%	115	29.6%	-	-	-	-	-	NULL
FKBP8	23770	genome.wustl.edu	37	19	18648453	18648453	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_012181.3	-1	reviewed	p.E301D	0.995	16	0%	27	37%	-	-	possibly_damaging(0.925)	tolerated(0.15)	deleterious(0.615)	HMMPfam_TPR_1,superfamily_SSF48452
ZNF708	7562	genome.wustl.edu	37	19	21477058	21477058	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_021269.2	-1	validated	p.S237L	0.001	38	0%	28	42.9%	-	-	possibly_damaging(0.485)	deleterious(0.04)	deleterious(0.510)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MAP4K1	11184	genome.wustl.edu	37	19	39108072	39108072	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_007181.4	-1	validated	p.S57C	1.000	99	0%	136	12.5%	-	-	possibly_damaging(0.563)	deleterious(0)	deleterious(0.637)	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
TIMM50	92609	genome.wustl.edu	37	19	39979194	39979194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001001563.1	+1	validated	p.G393V	0.020	42	0%	40	12.5%	-	-	benign(0.154)	tolerated(0.07)	neutral(0.333)	HMMPfam_NIF,superfamily_SSF56784
ARHGAP35	2909	genome.wustl.edu	37	19	47423373	47423373	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_004491.4	+1	reviewed	p.Q481*	1.000	33	0%	41	29.3%	-	-	-	-	-	HMMSmart_SM00441
LENG9	94059	genome.wustl.edu	37	19	54973989	54973991	+	In_Frame_Del	DEL	CCT	CCT	-	rs140013148	byCluster;by1000genomes	TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	CCT	CCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_198988.1	-1	validated	p.E262in_frame_del	0.000:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
KIR3DX1	90011	genome.wustl.edu	37	19	55048376	55048376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	ENST00000335056	+1	known	p.P315S	0.001	39	0%	57	26.3%	-	-	benign(0.169)	deleterious(0)	neutral(0.460)	HMMSmart_SM00409
NKX2-2	4821	genome.wustl.edu	37	20	21494276	21494276	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_002509.2	-1	reviewed	p.S11L	1.000	42	0%	47	25.5%	-	-	benign(0.429)	deleterious(0)	deleterious(0.584)	NULL
PAX1	5075	genome.wustl.edu	37	20	21695212	21695212	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_006192.3	+1	validated	p.P459L	0.000	7	0.000	14	0.571	-	-	possibly_damaging(0.605)	deleterious(0)	deleterious(0.654)	NULL
COMMD7	149951	genome.wustl.edu	37	20	31315728	31315728	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_053041.2	-1	validated	p.I71M	0.460	113	0%	179	57%	-	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	HMMPfam_HCaRG
TRPC4AP	26133	genome.wustl.edu	37	20	33603857	33603857	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_015638.2	-1	validated	p.S435C	1.000	70	0%	109	27.5%	-	-	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	NULL
C20orf24	55969	genome.wustl.edu	37	20	35240822	35240823	+	RNA	INS	-	-	ATC	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NR_026562.1	+1	validated	NULL	0.000:0.006	-	-	-	-	-	-	-	-	-	-
ATF4	468	genome.wustl.edu	37	22	39917859	39917859	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001675.2	+1	reviewed	p.D103G	0.955	137	0%	140	60.7%	-	-	probably_damaging(0.992)	tolerated(0.2)	deleterious(0.496)	NULL
MED14	9282	genome.wustl.edu	37	X	40522214	40522214	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_004229.3	-1	reviewed	p.M1216R	1.000	156	0%	110	33.6%	-	-	possibly_damaging(0.923)	deleterious(0)	deleterious(0.817)	NULL
LOC653354	653354	genome.wustl.edu	37	X	100852580	100852580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	XM_001717888.2	+1	model	p.A45V	0.000	84	0%	105	27.6%	-	-	-	-	-	HMMPfam_DUF634
ZFP92	139735	genome.wustl.edu	37	X	152686158	152686158	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A0JN-01A-11D-A10B-09	TCGA-B5-A0JN-10A-01D-A10O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	8dd14f0e-8601-4aa1-864c-3c49e768cdd1	fee036ee-2e61-44bc-aff0-6d82beafcd59	NM_001136273.1	+1	validated	p.L108H	0.000	34	0%	36	16.7%	-	-	-	-	-	NULL
