Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CHD5	26038	genome.wustl.edu	37	1	6166347	6166347	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015557.1	-1	provisional	p.D1953A	1.000	75	0%	63	19%	0	-	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
CAMTA1	23261	genome.wustl.edu	37	1	7797393	7797393	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015215.1	+1	validated	p.D1141N	1.000	118	0%	114	21.9%	0	-	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	superfamily_Ankyrin repeat
PER3	8863	genome.wustl.edu	37	1	7863904	7863904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016831.1	+1	reviewed	p.R377*	0.997	394	0%	426	24.6%	6	16.6%	-	-	-	HMMSmart_PAC,superfamily_SSF55785
H6PD	9563	genome.wustl.edu	37	1	9324265	9324265	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004285.3	+1	reviewed	p.I571	0.012	23	0%	14	42.9%	7	14.2%	-	-	-	HMMPfam_Glucosamine_iso,superfamily_SSF100950
NMNAT1	64802	genome.wustl.edu	37	1	10035791	10035791	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022787.3	+1	provisional	p.E86A	1.000	177	0%	255	27.8%	9	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
MTOR	2475	genome.wustl.edu	37	1	11199684	11199684	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004958.3	-1	reviewed	p.K1635T	1.000	97	0%	111	23.4%	6	33.3%	benign(0.01)	deleterious(0)	neutral(0.445)	HMMPfam_FAT,superfamily_ARM-type_fold,superfamily_SSF48452
CLCN6	1185	genome.wustl.edu	37	1	11894579	11894579	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001286.2	+1	reviewed	p.I575M	1.000	281	0%	261	11.5%	3	0%	probably_damaging(0.969)	deleterious(0.01)	deleterious(0.817)	superfamily_Clc chloride channel
VPS13D	55187	genome.wustl.edu	37	1	12446285	12446285	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000011700	+1	known	p.L2664*	1.000	378	0%	443	32.1%	9	22.2%	benign(0.088)	deleterious(0.01)	neutral(0.412)	NULL
AADACL3	126767	genome.wustl.edu	37	1	12785535	12785535	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001103170.1	+1	validated	p.V209I	0.000	261	0%	279	16.8%	0	-	benign(0.157)	tolerated(0.06)	neutral(0.337)	HMMPfam_Abhydrolase_3,superfamily_alpha/beta-Hydrolases
DNAJC16	23341	genome.wustl.edu	37	1	15890512	15890512	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015291.2	+1	provisional	p.F476C	0.929	248	0%	249	23.3%	4	25%	benign(0.384)	tolerated(0.18)	neutral(0.178)	NULL
SPEN	23013	genome.wustl.edu	37	1	16235856	16235856	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015001.2	+1	reviewed	p.R308*	0.996	303	0%	246	24%	5	40%	-	-	-	NULL
SPEN	23013	genome.wustl.edu	37	1	16255694	16255694	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015001.2	+1	reviewed	p.R987C	1.000	71	0%	97	27.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SPEN	23013	genome.wustl.edu	37	1	16259975	16259975	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015001.2	+1	reviewed	p.E2414*	0.055	249	0.4%	233	26.6%	10	40%	-	-	-	NULL
UBR4	23352	genome.wustl.edu	37	1	19440525	19440525	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020765.2	-1	validated	p.R3748*	1.000	175	0%	161	29.8%	12	8.3%	-	-	-	superfamily_ARM repeat
UBR4	23352	genome.wustl.edu	37	1	19451037	19451037	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020765.2	-1	validated	p.E3196K	1.000	350	0%	369	24.1%	7	42.8%	possibly_damaging(0.794)	deleterious(0.01)	deleterious(0.704)	superfamily_ARM repeat
RNF186	54546	genome.wustl.edu	37	1	20141107	20141107	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019062.1	-1	provisional	p.A163V	0.085	73	0%	78	21.8%	0	-	benign(0)	tolerated(0.81)	neutral(0.001)	NULL
ALPL	249	genome.wustl.edu	37	1	21887130	21887130	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000478.4	+1	reviewed	p.D25Y	1.000	106	0%	113	23.9%	25	12%	possibly_damaging(0.757)	deleterious(0)	deleterious(0.724)	superfamily_Alkaline_phosphatase_core
CELA3A	10136	genome.wustl.edu	37	1	22336235	22336235	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005747.4	+1	reviewed	p.D227G	0.862	149	0%	125	28%	0	-	possibly_damaging(0.697)	tolerated(0.08)	deleterious(0.550)	HMMPfam_Trypsin,HMMSmart_SM00020,superfamily_Trypsin-like serine proteases
GRHL3	57822	genome.wustl.edu	37	1	24663050	24663050	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021180.2	+1	reviewed	p.E120D	0.998	100	0%	131	16%	3	66.6%	benign(0.001)	tolerated(0.48)	neutral(0.011)	NULL
C1orf130	400746	genome.wustl.edu	37	1	24932108	24932108	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010980.4	+1	validated	p.T60M	0.002	56	0%	83	20.5%	1	100%	benign(0.005)	tolerated(0.12)	neutral(0.261)	NULL
FGR	2268	genome.wustl.edu	37	1	27948081	27948081	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001042729.1	-1	reviewed	p.I139	1.000	216	0%	231	23.8%	5	0%	-	-	-	superfamily_SH3,superfamily_SSF55550
PUM1	9698	genome.wustl.edu	37	1	31479913	31479913	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001020658.1	-1	reviewed	p.E157*	1.000	559	0.2%	575	23.8%	10	10%	-	-	-	NULL
NKAIN1	79570	genome.wustl.edu	37	1	31654734	31654734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024522.2	-1	validated	p.S152L	1.000	42	0%	44	20.5%	0	-	possibly_damaging(0.839)	deleterious(0)	deleterious(0.765)	HMMPfam_NKAIN
KPNA6	23633	genome.wustl.edu	37	1	32632805	32632805	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012316.4	+1	reviewed	p.I384	0.718	255	0%	361	15.2%	9	11.1%	-	-	-	HMMPfam_Arm,HMMSmart_SM00185,superfamily_ARM repeat
LCK	3932	genome.wustl.edu	37	1	32741575	32741575	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001042771.1	+1	reviewed	p.Y181S	1.000	163	0%	199	25.1%	30	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
YARS	8565	genome.wustl.edu	37	1	33272174	33272174	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003680.3	-1	reviewed	p.V140G	1.000	177	0%	151	35.8%	44	36.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_tRNA-synt_1b,superfamily_Nucleotidylyl transferase
TRIM62	55223	genome.wustl.edu	37	1	33613098	33613098	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018207.2	-1	validated	p.E370K	1.000	17	0%	20	35%	1	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	HMMPfam_SPRY,HMMSmart_SM00449
PHC2	1912	genome.wustl.edu	37	1	33795722	33795722	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000307890	-1	known	e10+1	0.979	324	0%	353	26.1%	63	30.1%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	-
PHC2	1912	genome.wustl.edu	37	1	33837988	33837988	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198040.2	-1	reviewed	p.Y79H	1.000	54	0%	57	35.1%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C1orf94	84970	genome.wustl.edu	37	1	34667833	34667833	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134734.1	+1	validated	p.T473	0.043	364	0%	412	24%	0	-	-	-	-	NULL
EIF2C3	192669	genome.wustl.edu	37	1	36505935	36505935	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024852.2	+1	reviewed	p.R689*	1.000	162	0%	212	32.5%	5	20%	-	-	-	HMMPfam_Piwi,superfamily_RNaseH_fold
STK40	83931	genome.wustl.edu	37	1	36821017	36821017	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032017.1	-1	provisional	p.I120	0.142	178	0%	187	27.8%	23	17.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
RSPO1	284654	genome.wustl.edu	37	1	38079992	38079992	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001038633.2	-1	reviewed	p.E100	0.967	66	0%	73	28.8%	1	0%	-	-	-	HMMSmart_SM00261,superfamily_Growth factor receptor domain
SF3A3	10946	genome.wustl.edu	37	1	38453261	38453261	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006802.2	-1	reviewed	p.R96Q	1.000	208	1%	205	27.3%	14	14.2%	benign(0.001)	tolerated(0.08)	neutral(0.300)	NULL
GJA9	81025	genome.wustl.edu	37	1	39340305	39340305	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030772.3	-1	provisional	p.N489T	0.231	169	0%	178	28.7%	0	-	benign(0.273)	deleterious(0)	deleterious(0.474)	NULL
MACF1	23499	genome.wustl.edu	37	1	39827169	39827169	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000372925	+1	known	p.R1269*	0.004	83	0%	74	27%	2	0%	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
PABPC4	8761	genome.wustl.edu	37	1	40030888	40030888	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001135653.1	-1	reviewed	p.T379A	1.000	115	0%	134	23.1%	107	32.7%	benign(0.04)	tolerated(0.74)	neutral(0.004)	superfamily_SSF54928
RLF	6018	genome.wustl.edu	37	1	40668129	40668129	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012421.3	+1	validated	p.R218Q	1.000	257	0.4%	299	22.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZMPSTE24	10269	genome.wustl.edu	37	1	40724018	40724018	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005857.3	+1	reviewed	p.L25	0.957	126	0%	130	26.2%	7	71.4%	-	-	-	NULL
SMAP2	64744	genome.wustl.edu	37	1	40839827	40839827	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022733.1	+1	provisional	p.Y12C	1.000	105	0%	116	24.1%	13	30.7%	probably_damaging(1)	tolerated(0.34)	deleterious(0.523)	superfamily_Pyk2-associated protein beta ARF-GAP domain
SMAP2	64744	genome.wustl.edu	37	1	40874359	40874359	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022733.1	+1	provisional	p.R91Q	1.000	284	0%	380	23.4%	30	30%	probably_damaging(0.996)	tolerated(0.4)	deleterious(0.478)	HMMPfam_ArfGap,HMMSmart_SM00105,superfamily_Pyk2-associated protein beta ARF-GAP domain
ZNF643	65243	genome.wustl.edu	37	1	40919909	40919909	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000411995	+1	known	p.A27V	0.004	30	0%	32	37.5%	0	-	-	-	-	NULL
HIVEP3	59269	genome.wustl.edu	37	1	42046905	42046905	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024503.3	-1	validated	p.A1188	0.223	121	0%	230	31.3%	1	0%	-	-	-	NULL
CCDC30	728621	genome.wustl.edu	37	1	43021926	43021926	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080850.2	+1	validated	p.Q175H	0.307	167	0%	346	15%	0	-	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	NULL
CLDN19	149461	genome.wustl.edu	37	1	43201548	43201548	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_148960.2	-1	reviewed	e4+1	1.000	51	0%	40	37.5%	0	-	-	-	-	-
LEPRE1	64175	genome.wustl.edu	37	1	43212986	43212986	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022356.3	-1	reviewed	p.A671D	1.000	33	0%	33	30.3%	30	23.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_2OG-FeII_Oxy,HMMSmart_SM00702
ZSWIM5	57643	genome.wustl.edu	37	1	45484270	45484270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020883.1	-1	validated	p.F1138L	1.000	434	0%	558	28.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
AKR1A1	10327	genome.wustl.edu	37	1	46034216	46034216	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006066.2	+1	reviewed	p.G204	0.998	118	0%	151	19.2%	332	34.3%	-	-	-	HMMPfam_Aldo_ket_red,superfamily_NAD(P)-linked oxidoreductase
TMEM69	51249	genome.wustl.edu	37	1	46159189	46159189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016486.3	+1	validated	p.K119T	0.977	126	0%	135	21.5%	19	52.6%	probably_damaging(0.991)	tolerated(0.49)	neutral(0.455)	NULL
PIK3R3	8503	genome.wustl.edu	37	1	46521530	46521530	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001114172.1	-1	validated	p.K293T	1.000	621	0%	781	30.7%	21	33.3%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
ATPAF1	64756	genome.wustl.edu	37	1	47110890	47110890	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022745.3	-1	reviewed	p.F209	1.000	308	0%	401	22.7%	35	28.5%	-	-	-	HMMPfam_ATP11
ECHDC2	55268	genome.wustl.edu	37	1	53377301	53377301	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018281.2	-1	validated	p.R72W	0.682	91	0%	85	30.6%	27	51.8%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_ECH,superfamily_SSF52096
SCP2	6342	genome.wustl.edu	37	1	53443986	53443986	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002979.3	+1	reviewed	p.E258*	1.000	406	0%	435	22.5%	13	0%	-	-	-	NULL
TMEM59	9528	genome.wustl.edu	37	1	54497845	54497845	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004872.3	-1	provisional	p.N317I	0.998	279	0%	310	28.1%	397	45%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	NULL
OMA1	115209	genome.wustl.edu	37	1	59004633	59004633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145243.3	-1	provisional	p.E112*	0.000	295	0%	297	23.6%	5	0%	-	-	-	NULL
NFIA	4774	genome.wustl.edu	37	1	61554044	61554044	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145512.1	+1	reviewed	p.R129Q	1.000	109	0%	107	16.8%	3	66.6%	possibly_damaging(0.627)	tolerated(0.07)	deleterious(0.537)	HMMPfam_MH1,HMMSmart_SM00523
NFIA	4774	genome.wustl.edu	37	1	61554319	61554319	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145512.1	+1	reviewed	p.D221N	1.000	65	1.5%	98	22.4%	4	25%	possibly_damaging(0.465)	deleterious(0)	deleterious(0.598)	NULL
L1TD1	54596	genome.wustl.edu	37	1	62676327	62676327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019079.4	+1	validated	p.E627D	0.122	79	0%	125	21.6%	0	-	benign(0.101)	tolerated(0.92)	neutral(0.007)	NULL
L1TD1	54596	genome.wustl.edu	37	1	62676427	62676427	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019079.4	+1	validated	p.E661*	0.000	85	0%	132	21.2%	0	-	-	-	-	HMMPfam_Transposase_22
L1TD1	54596	genome.wustl.edu	37	1	62676526	62676526	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019079.4	+1	validated	p.E694K	0.615	92	0%	151	29.1%	1	0%	probably_damaging(0.991)	deleterious(0.02)	deleterious(0.827)	HMMPfam_Transposase_22
KANK4	163782	genome.wustl.edu	37	1	62740728	62740728	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181712.4	-1	validated	p.E16D	1.000	145	0%	153	20.3%	0	-	benign(0.074)	tolerated(0.44)	neutral(0.018)	NULL
DNAJC6	9829	genome.wustl.edu	37	1	65867528	65867528	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014787.2	+1	validated	p.Q674P	1.000	237	0%	293	23.2%	0	-	possibly_damaging(0.836)	tolerated(0.08)	deleterious(0.619)	NULL
SGIP1	84251	genome.wustl.edu	37	1	67195044	67195044	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032291.2	+1	validated	p.R614W	1.000	320	0%	345	27.5%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SAFF
C1orf141	400757	genome.wustl.edu	37	1	67558934	67558934	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001013674.1	-1	predicted	p.Q319H	0.088	239	0%	203	25.1%	0	-	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
LRRC7	57554	genome.wustl.edu	37	1	70486792	70486792	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020794.2	+1	validated	p.E471K	1.000	180	0%	189	28%	0	-	benign(0.025)	tolerated(0.08)	neutral(0.301)	NULL
ZRANB2	9406	genome.wustl.edu	37	1	71544351	71544351	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_203350.1	-1	validated	p.R33*	0.998	189	0%	200	25.5%	25	32%	-	-	-	HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_Znf265 first zinc-finger domain
NEXN	91624	genome.wustl.edu	37	1	78395143	78395143	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000342754	+1	known	p.E236*	1.000	251	0%	431	25.1%	2	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
LPHN2	23266	genome.wustl.edu	37	1	82408871	82408871	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012302.2	+1	reviewed	p.R206	1.000	324	0%	501	29.1%	5	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
LPHN2	23266	genome.wustl.edu	37	1	82409309	82409309	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012302.2	+1	reviewed	p.E352*	1.000	200	0%	310	28.7%	3	0%	-	-	-	HMMPfam_OLF,HMMSmart_SM00284
SPATA1	100505741	genome.wustl.edu	37	1	84986370	84986370	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001081472.1	+1	validated	p.L69I	1.000	224	0%	271	26.6%	0	-	-	-	-	NULL
CYR61	3491	genome.wustl.edu	37	1	86048107	86048107	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001554.4	+1	validated	p.M215L	1.000	238	0%	294	25.5%	194	4.6%	benign(0)	tolerated(0.44)	neutral(0.013)	NULL
CLCA4	22802	genome.wustl.edu	37	1	87045666	87045666	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012128.3	+1	reviewed	p.L800I	0.972	93	0%	116	29.3%	6	83.3%	possibly_damaging(0.927)	tolerated(0.23)	neutral(0.416)	NULL
GBP2	2634	genome.wustl.edu	37	1	89585912	89585912	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004120.3	-1	reviewed	p.F126	0.991	493	0%	602	25.9%	150	31.3%	-	-	-	HMMPfam_GBP,superfamily_SSF52540
LRRC8D	55144	genome.wustl.edu	37	1	90399814	90399814	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134479.1	+1	validated	p.S396Y	1.000	208	0%	293	21.8%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF326	284695	genome.wustl.edu	37	1	90482992	90482992	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182976.2	+1	validated	p.K348T	1.000	210	0%	246	16.7%	5	20%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_AKAP95
CDC7	8317	genome.wustl.edu	37	1	91977351	91977351	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134419.1	+1	reviewed	p.S148Y	1.000	478	0%	483	26.9%	1	100%	possibly_damaging(0.931)	tolerated(0.08)	deleterious(0.677)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
BRDT	676	genome.wustl.edu	37	1	92446296	92446296	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001726.3	+1	validated	p.E462*	0.011	108	0%	199	26.6%	0	-	-	-	-	NULL
KIAA1107	23285	genome.wustl.edu	37	1	92649740	92649740	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015237.2	+1	validated	p.G1306	0.990	144	0%	187	27.3%	2	0%	-	-	-	NULL
C1orf146	388649	genome.wustl.edu	37	1	92709847	92709847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001012425.1	+1	validated	p.E78D	1.000	146	0%	138	26.8%	0	-	possibly_damaging(0.791)	deleterious(0)	deleterious(0.741)	NULL
CNN3	1266	genome.wustl.edu	37	1	95392400	95392400	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001839.3	-1	validated	p.K17N	1.000	95	0%	91	30.8%	66	25.7%	possibly_damaging(0.869)	tolerated(0.11)	deleterious(0.609)	superfamily_Calponin-homology domain CH-domain
LPPR4	9890	genome.wustl.edu	37	1	99771731	99771731	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014839.4	+1	reviewed	p.S486L	0.759	94	0%	103	27.2%	0	-	benign(0.323)	deleterious(0.01)	deleterious(0.507)	NULL
PALMD	54873	genome.wustl.edu	37	1	100159606	100159606	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017734.4	+1	validated	p.K548N	1.000	150	0%	157	14%	45	35.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
LRRC39	127495	genome.wustl.edu	37	1	100624847	100624847	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144620.2	-1	provisional	p.R115Q	1.000	302	0%	392	23.7%	1	0%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
DBT	1629	genome.wustl.edu	37	1	100684204	100684204	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001918.2	-1	reviewed	p.R178H	1.000	362	0%	426	17.6%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_E3_binding,superfamily_Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
AMY2A	279	genome.wustl.edu	37	1	104166536	104166536	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000699.2	+1	reviewed	p.E384*	0.996	658	0%	825	16.7%	2	0%	-	-	-	HMMPfam_Alpha-amylase,HMMSmart_Aamy,superfamily_Glyco_hydro_cat
LRIF1	55791	genome.wustl.edu	37	1	111494774	111494774	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018372.3	-1	validated	p.K244N	1.000	427	0%	401	28.2%	3	0%	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
KCND3	3752	genome.wustl.edu	37	1	112323370	112323370	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004980.3	-1	reviewed	p.S438L	1.000	132	0%	131	17.6%	3	0%	benign(0.045)	deleterious(0.02)	neutral(0.386)	NULL
FAM19A3	284467	genome.wustl.edu	37	1	113266618	113266618	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004440.1	+1	reviewed	p.R106H	0.021	70	0%	61	27.9%	1	0%	benign(0.001)	tolerated(0.37)	neutral(0.019)	NULL
SLC16A1	6566	genome.wustl.edu	37	1	113460032	113460032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003051.3	-1	reviewed	p.F332L	0.996	63	1.6%	100	28%	12	41.6%	benign(0.033)	tolerated(1)	neutral(0.002)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
PTPN22	26191	genome.wustl.edu	37	1	114399011	114399011	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015967.4	-1	reviewed	p.F178C	1.000	418	0%	462	24%	3	0%	benign(0.313)	deleterious(0.03)	neutral(0.462)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
NRAS	4893	genome.wustl.edu	37	1	115256486	115256486	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002524.3	-1	reviewed	p.G75	1.000	233	0%	294	26.5%	14	28.5%	-	-	-	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CSDE1	7812	genome.wustl.edu	37	1	115261263	115261263	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001130523.1	-1	validated	p.R789C	1.000	203	0%	251	22.7%	440	37.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GDAP2	54834	genome.wustl.edu	37	1	118461246	118461246	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017686.3	-1	validated	p.L97	1.000	231	0%	290	27.9%	3	66.6%	-	-	-	HMMPfam_Macro,HMMSmart_SM00506,superfamily_Macro domain-like
SPAG17	200162	genome.wustl.edu	37	1	118634279	118634279	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_206996.2	-1	validated	p.R437*	1.000	225	0%	298	27.9%	0	-	-	-	-	NULL
HSD3B1	3283	genome.wustl.edu	37	1	120050216	120050216	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000862.2	+1	validated	p.F39	0.986	450	0.2%	499	25.7%	0	-	-	-	-	HMMPfam_3Beta_HSD,superfamily_NAD(P)-bd
PDE4DIP	9659	genome.wustl.edu	37	1	144874727	144874727	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014644.4	-1	validated	p.S1627	1.000	416	0%	448	11.8%	2	0%	-	-	-	NULL
SETDB1	9869	genome.wustl.edu	37	1	150931794	150931794	+	Missense_Mutation	SNP	C	C	T	rs2691551	byCluster	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145415.1	+1	reviewed	p.A824V	1.000	547	0%	593	28.7%	4	0%	probably_damaging(0.987)	tolerated(0.07)	deleterious(0.756)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
CELF3	11189	genome.wustl.edu	37	1	151677566	151677566	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007185.4	-1	reviewed	p.R450H	1.000	146	0%	94	27.7%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
NPR1	4881	genome.wustl.edu	37	1	153665653	153665653	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000906.3	+1	validated	p.R1035*	1.000	247	0%	292	29.1%	9	33.3%	-	-	-	HMMPfam_Guanylate_cyc,superfamily_Adenylyl and guanylyl cyclase catalytic domain
DCST2	127579	genome.wustl.edu	37	1	155006114	155006114	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144622.2	-1	validated	p.A22T	0.052	71	0%	74	40.5%	0	-	benign(0.022)	tolerated(0.64)	neutral(0.004)	NULL
TRIM46	80128	genome.wustl.edu	37	1	155156517	155156517	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025058.3	+1	validated	p.R711S	0.998	297	0%	205	19.5%	0	-	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	NULL
LOC100129268	100129268	genome.wustl.edu	37	1	155170588	155170588	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001724971.2	+1	model	p.I90M	0.000	212	0%	178	13.5%	0	-	-	-	-	NULL
ASH1L	55870	genome.wustl.edu	37	1	155450468	155450468	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018489.2	-1	reviewed	p.P731	0.998	220	0%	184	25.5%	3	33.3%	-	-	-	NULL
DAP3	7818	genome.wustl.edu	37	1	155697418	155697418	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004632.2	+1	reviewed	p.N164K	1.000	291	0%	294	23.1%	51	31.3%	probably_damaging(0.999)	tolerated(0.12)	deleterious(0.751)	HMMPfam_DAP3
GON4L	54856	genome.wustl.edu	37	1	155774895	155774895	+	Missense_Mutation	SNP	G	G	T	rs59332147		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001037533.1	-1	validated	p.S497Y	1.000	293	0%	283	23%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C1orf85	112770	genome.wustl.edu	37	1	156264275	156264275	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144580.1	-1	provisional	p.D154N	0.012	172	0%	199	21.1%	21	9.5%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
IQGAP3	128239	genome.wustl.edu	37	1	156534457	156534457	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178229.4	-1	validated	p.I129	0.999	347	0%	336	16.1%	0	-	-	-	-	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology
NES	10763	genome.wustl.edu	37	1	156639211	156639211	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006617.1	-1	reviewed	p.S1590Y	0.006	93	0%	66	16.7%	13	7.6%	possibly_damaging(0.708)	deleterious(0)	deleterious(0.700)	NULL
NES	10763	genome.wustl.edu	37	1	156642854	156642854	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006617.1	-1	reviewed	p.E376*	0.988	114	0%	265	17%	22	0%	-	-	-	NULL
FCRL2	79368	genome.wustl.edu	37	1	157740422	157740422	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030764.3	-1	reviewed	p.F29	0.734	158	0%	134	16.4%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
OR10K2	391107	genome.wustl.edu	37	1	158390486	158390486	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004476.1	-1	provisional	p.I57	0.824	277	0%	354	26%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SPTA1	6708	genome.wustl.edu	37	1	158617442	158617442	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003126.2	-1	reviewed	p.Q1261H	0.998	214	0%	261	19.2%	0	-	benign(0.001)	tolerated(0.51)	neutral(0.009)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
SPTA1	6708	genome.wustl.edu	37	1	158644356	158644356	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003126.2	-1	reviewed	p.L408M	1.000	152	0%	143	21%	0	-	probably_damaging(0.995)	tolerated(0.1)	deleterious(0.744)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
OR6K2	81448	genome.wustl.edu	37	1	158669673	158669673	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005279.1	-1	provisional	p.T257I	0.751	284	0%	368	25%	0	-	benign(0.102)	tolerated(0.91)	neutral(0.008)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MNDA	4332	genome.wustl.edu	37	1	158812196	158812196	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002432.1	+1	reviewed	p.E85*	0.000	127	0%	204	22.5%	4	0%	-	-	-	NULL
CASQ1	844	genome.wustl.edu	37	1	160162630	160162630	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001231.4	+1	reviewed	p.F100	0.974	216	0%	263	27.8%	0	-	-	-	-	HMMPfam_Calsequestrin,superfamily_Thiordxn-like_fd
LY9	4063	genome.wustl.edu	37	1	160783590	160783590	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002348.2	+1	validated	p.L207I	0.343	120	0%	110	36.4%	7	0%	probably_damaging(0.989)	deleterious(0.03)	deleterious(0.804)	superfamily_Immunoglobulin
NOS1AP	9722	genome.wustl.edu	37	1	162335186	162335186	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001126060.1	+1	reviewed	p.S16Y	0.001	147	0%	234	24.4%	0	-	unknown(0)	tolerated(0.6)	-	NULL
DUSP27	92235	genome.wustl.edu	37	1	167097079	167097079	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080426.1	+1	provisional	p.S904F	0.703	199	0%	265	24.9%	0	-	benign(0.005)	tolerated(0.12)	neutral(0.261)	NULL
DCAF6	55827	genome.wustl.edu	37	1	168007704	168007704	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018442.2	+1	validated	p.K512*	1.000	172	0%	245	26.9%	25	0%	-	-	-	superfamily_WD40_like
ATP1B1	481	genome.wustl.edu	37	1	169100621	169100621	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001677.3	+1	reviewed	p.G247D	1.000	266	0%	287	22%	299	47.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_K-ATPase
METTL13	51603	genome.wustl.edu	37	1	171751124	171751124	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015935.4	+1	validated	p.K6T	0.909	190	0%	242	27.7%	8	37.5%	possibly_damaging(0.712)	deleterious(0.01)	deleterious(0.663)	NULL
DNM3	26052	genome.wustl.edu	37	1	172037975	172037975	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015569.3	+1	validated	p.R451I	1.000	247	0%	278	28.1%	1	0%	possibly_damaging(0.44)	deleterious(0)	deleterious(0.588)	HMMPfam_Dynamin_M
DARS2	55157	genome.wustl.edu	37	1	173826729	173826729	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018122.4	+1	reviewed	p.F608	1.000	234	0%	268	25.7%	16	37.5%	-	-	-	HMMPfam_tRNA-synt_2,superfamily_SSF55681
RC3H1	149041	genome.wustl.edu	37	1	173952691	173952691	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_172071.2	-1	validated	p.R153C	1.000	202	0%	227	26.4%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GPR52	9293	genome.wustl.edu	37	1	174418235	174418235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005684.4	+1	validated	p.R329Q	1.000	108	0%	111	31.5%	0	-	possibly_damaging(0.623)	tolerated(0.24)	neutral(0.255)	superfamily_SSF81321
TNN	63923	genome.wustl.edu	37	1	175049488	175049488	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022093.1	+1	validated	p.T325I	1.000	162	0%	167	16.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
TNR	7143	genome.wustl.edu	37	1	175331827	175331827	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003285.2	-1	validated	p.S942	0.996	323	0%	339	18.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
RALGPS2	55103	genome.wustl.edu	37	1	178866849	178866849	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152663.3	+1	validated	p.F494L	1.000	391	0%	434	20.7%	4	0%	benign(0.025)	tolerated(0.97)	neutral(0.001)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
QSOX1	5768	genome.wustl.edu	37	1	180151338	180151338	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002826.4	+1	reviewed	p.G212	0.019	185	0%	147	22.4%	65	49.2%	-	-	-	NULL
LHX4	89884	genome.wustl.edu	37	1	180240545	180240545	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033343.2	+1	reviewed	p.R161Q	1.000	106	0%	102	28.4%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
XPR1	9213	genome.wustl.edu	37	1	180794046	180794046	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004736.3	+1	validated	p.P307	0.905	422	0%	459	24.4%	10	30%	-	-	-	HMMPfam_EXS
LOC100287984	100287984	genome.wustl.edu	37	1	181453006	181453006	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002342125.1	-1	model	p.R51C	1.000	48	0%	36	27.8%	0	-	-	-	-	NULL
CACNA1E	777	genome.wustl.edu	37	1	181726111	181726111	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000721.2	+1	reviewed	p.R1393H	1.000	438	0%	477	31%	0	-	benign(0.05)	tolerated(0.17)	neutral(0.062)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
RNASEL	6041	genome.wustl.edu	37	1	182555478	182555478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021133.2	-1	reviewed	p.R155Q	0.029	221	0%	221	23.5%	1	100%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Ank,superfamily_Ankyrin repeat
PRG4	10216	genome.wustl.edu	37	1	186270819	186270819	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005807.3	+1	reviewed	p.D99N	1.000	247	0%	333	26.4%	0	-	unknown(0)	-	-	HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Somatomedin B domain
RGS1	5996	genome.wustl.edu	37	1	192548339	192548339	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002922.3	+1	reviewed	p.E173*	1.000	238	0%	265	25.3%	377	0%	-	-	-	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
F13B	2165	genome.wustl.edu	37	1	197021872	197021872	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001994.2	-1	reviewed	p.D483Y	1.000	321	0%	360	25.6%	0	-	probably_damaging(0.999)	deleterious(0.04)	deleterious(0.839)	superfamily_Complement_control_module
ASPM	259266	genome.wustl.edu	37	1	197060162	197060162	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018136.4	-1	reviewed	p.R3152*	1.000	230	0%	202	30.2%	3	0%	-	-	-	HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
ASPM	259266	genome.wustl.edu	37	1	197073877	197073877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018136.4	-1	reviewed	p.Q1502K	0.835	378	0%	360	13.9%	1	0%	benign(0.096)	tolerated(0.28)	neutral(0.038)	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases
CRB1	23418	genome.wustl.edu	37	1	197390934	197390934	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_201253.1	+1	reviewed	p.S659L	0.008	171	0%	203	31%	0	-	benign(0.056)	tolerated(0.32)	neutral(0.028)	superfamily_Concanavalin A-like lectins/glucanases
KIF14	9928	genome.wustl.edu	37	1	200571027	200571027	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014875.2	-1	validated	p.R717G	0.996	282	0%	326	30.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
IGFN1	91156	genome.wustl.edu	37	1	201169470	201169470	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000451870	+1	known	p.I188	0.997	104	0%	134	24.6%	0	-	-	-	-	NULL
IGFN1	91156	genome.wustl.edu	37	1	201191935	201191935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000451870	+1	known	p.R967C	0.127	148	0%	170	28.8%	0	-	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
IPO9	55705	genome.wustl.edu	37	1	201840427	201840427	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018085.4	+1	validated	p.F850V	1.000	161	0%	194	28.9%	26	42.3%	benign(0.054)	deleterious(0)	neutral(0.448)	superfamily_ARM repeat
LGR6	59352	genome.wustl.edu	37	1	202194576	202194576	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001017403.1	+1	reviewed	p.E80K	0.998	190	0%	160	26.3%	0	-	benign(0.006)	tolerated(0.67)	neutral(0.003)	HMMSmart_SM00369,superfamily_RNI-like
ADIPOR1	51094	genome.wustl.edu	37	1	202914293	202914293	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001127687.1	-1	validated	p.F145	0.737	100	0%	116	22.4%	91	35.1%	-	-	-	HMMPfam_HlyIII
ADORA1	134	genome.wustl.edu	37	1	203134743	203134743	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000674.2	+1	reviewed	p.I232	0.988	291	0.3%	325	24.3%	3	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CHI3L1	1116	genome.wustl.edu	37	1	203150406	203150406	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001276.2	-1	reviewed	p.D199N	1.000	192	0%	205	20%	39	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Glyco_hydro_18,HMMSmart_Glyco_18,superfamily_Glyco_hydro_cat
FAM72A	729533	genome.wustl.edu	37	1	206141509	206141509	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001123168.1	+1	predicted	p.I72	0.949	1075	0.1%	1167	9.3%	1	0%	-	-	-	NULL
C4BPA	722	genome.wustl.edu	37	1	207314519	207314519	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000715.3	+1	reviewed	p.E448*	0.000	367	0%	353	22.1%	3	0%	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CR1	1378	genome.wustl.edu	37	1	207741267	207741267	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000651.4	+1	reviewed	p.D1351N	0.004	865	0%	782	13.4%	0	-	probably_damaging(0.996)	tolerated(1)	neutral(0.462)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
SYT14	255928	genome.wustl.edu	37	1	210273708	210273708	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153262.2	+1	validated	p.E356*	1.000	89	0%	90	21.1%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
HHAT	55733	genome.wustl.edu	37	1	210591588	210591588	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001122834.2	+1	validated	p.E259K	0.993	137	0%	116	34.5%	2	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MBOAT
PPP2R5A	5525	genome.wustl.edu	37	1	212515555	212515555	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006243.2	+1	reviewed	p.F169C	1.000	492	0%	633	18.5%	22	22.7%	possibly_damaging(0.848)	deleterious(0)	deleterious(0.770)	HMMPfam_B56,superfamily_ARM repeat
CENPF	1063	genome.wustl.edu	37	1	214794125	214794125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016343.3	+1	reviewed	p.R234I	0.389	149	0%	203	19.7%	0	-	possibly_damaging(0.462)	deleterious(0.03)	deleterious(0.516)	HMMPfam_Cenp-F_N
CENPF	1063	genome.wustl.edu	37	1	214819105	214819105	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016343.3	+1	reviewed	p.E2064	1.000	39	0%	33	27.3%	3	66.6%	-	-	-	NULL
CENPF	1063	genome.wustl.edu	37	1	214819405	214819405	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016343.3	+1	reviewed	p.Q2164	1.000	37	0%	37	21.6%	0	-	-	-	-	HMMPfam_Cenp-F_leu_zip
ESRRG	2104	genome.wustl.edu	37	1	216680401	216680401	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001438.2	-1	validated	p.M419I	1.000	237	0%	224	30.8%	0	-	benign(0.008)	deleterious(0.03)	neutral(0.364)	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
RAB3GAP2	25782	genome.wustl.edu	37	1	220340695	220340695	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012414.3	-1	reviewed	p.L1009	0.000	279	0%	355	26.5%	5	0%	-	-	-	NULL
RAB3GAP2	25782	genome.wustl.edu	37	1	220364576	220364576	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012414.3	-1	reviewed	p.E441*	1.000	148	0%	219	23.3%	2	50%	-	-	-	NULL
COG2	22796	genome.wustl.edu	37	1	230795218	230795218	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007357.2	+1	reviewed	p.F27L	0.995	193	0%	155	12.3%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_COG2
DISC1	27185	genome.wustl.edu	37	1	232094625	232094625	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018662.2	+1	reviewed	p.K678T	0.406	442	0%	521	32.6%	1	0%	benign(0.244)	deleterious(0.02)	neutral(0.408)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232539208	232539208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020808.3	-1	validated	p.F1642L	1.000	84	0%	109	29.4%	5	20%	benign(0.001)	tolerated(0.72)	neutral(0.002)	NULL
SIPA1L2	57568	genome.wustl.edu	37	1	232600771	232600771	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020808.3	-1	validated	p.E879*	1.000	167	0%	168	23.8%	2	0%	-	-	-	NULL
PCNXL2	80003	genome.wustl.edu	37	1	233394223	233394223	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014801.3	-1	provisional	p.V462A	0.000	157	0%	123	23.6%	3	33.3%	benign(0)	tolerated(0.33)	neutral(0.024)	NULL
TBCE	6905	genome.wustl.edu	37	1	235602124	235602124	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001079515.1	+1	reviewed	p.R386Q	0.027	190	0.5%	289	21.8%	14	35.7%	benign(0.004)	tolerated(0.07)	neutral(0.319)	superfamily_SSF52047
RYR2	6262	genome.wustl.edu	37	1	237872858	237872858	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001035.2	+1	reviewed	p.S3407	0.299	231	0%	240	29.2%	0	-	-	-	-	NULL
RGS7	6000	genome.wustl.edu	37	1	240964768	240964768	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002924.4	-1	validated	p.F467C	1.000	267	0%	370	30.5%	0	-	possibly_damaging(0.502)	deleterious(0.01)	deleterious(0.573)	NULL
KMO	8564	genome.wustl.edu	37	1	241725555	241725555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003679.3	+1	validated	p.K180Q	0.999	323	0%	403	29%	3	0%	benign(0.002)	tolerated(0.65)	neutral(0.003)	superfamily_FAD/NAD(P)-binding domain
EXO1	9156	genome.wustl.edu	37	1	242042228	242042228	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006027.4	+1	reviewed	p.P564	0.001	255	0.4%	330	28.5%	0	-	-	-	-	NULL
SDCCAG8	10806	genome.wustl.edu	37	1	243493905	243493905	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006642.2	+1	validated	p.E378*	1.000	114	0%	170	30.6%	4	25%	-	-	-	NULL
AKT3	10000	genome.wustl.edu	37	1	243708871	243708871	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005465.3	-1	reviewed	p.E398*	1.000	334	0%	389	15.2%	2	0%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
HNRNPU	3192	genome.wustl.edu	37	1	245025940	245025940	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031844.2	-1	reviewed	p.E262*	1.000	660	0.2%	655	19.1%	40	2.5%	-	-	-	NULL
CNST	163882	genome.wustl.edu	37	1	246810896	246810896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152609.2	+1	validated	p.R465W	0.000	103	0%	120	28.3%	6	66.6%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
AHCTF1	25909	genome.wustl.edu	37	1	247004125	247004125	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015446.4	-1	validated	p.R2262C	1.000	330	0%	306	16.7%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ZNF695	57116	genome.wustl.edu	37	1	247150323	247150323	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020394.3	-1	validated	p.G498	0.841	552	0%	634	31.4%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
NLRP3	114548	genome.wustl.edu	37	1	247588687	247588687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001079821.2	+1	reviewed	p.D648Y	0.484	165	0%	161	24.2%	2	0%	benign(0.223)	tolerated(0.07)	neutral(0.341)	NULL
OR2M2	391194	genome.wustl.edu	37	1	248343627	248343627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004688.1	+1	provisional	p.L114I	0.000	594	0%	535	24.5%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321
OR2G6	391211	genome.wustl.edu	37	1	248685642	248685642	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001013355.1	+1	validated	p.A232V	0.000	319	0%	258	26.7%	0	-	benign(0.001)	tolerated(0.06)	neutral(0.323)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PXDN	7837	genome.wustl.edu	37	2	1652405	1652405	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012293.1	-1	validated	p.E1049	0.104	76	0%	76	14.5%	8	0%	-	-	-	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases
ROCK2	9475	genome.wustl.edu	37	2	11334416	11334416	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004850.3	-1	reviewed	p.E1192*	1.000	315	0%	383	27.7%	4	0%	-	-	-	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
WDR35	57539	genome.wustl.edu	37	2	20169254	20169254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001006657.1	-1	reviewed	p.R332Q	1.000	237	0%	231	22.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_WD40 repeat-like
PUM2	23369	genome.wustl.edu	37	2	20458047	20458047	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015317.1	-1	provisional	p.R814H	1.000	154	0%	176	34.1%	22	31.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PUF,HMMSmart_SM00025,superfamily_ARM repeat
APOB	338	genome.wustl.edu	37	2	21230434	21230434	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000384.2	-1	reviewed	p.F3102L	0.998	268	0%	266	24.4%	0	-	probably_damaging(0.982)	-	-	NULL
KLHL29	114818	genome.wustl.edu	37	2	23785090	23785090	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000486442	+1	known	p.F8	0.997	22	0%	23	34.8%	0	-	-	-	-	NULL
DNAJC27	51277	genome.wustl.edu	37	2	25180016	25180016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016544.1	-1	provisional	p.R142C	1.000	309	0%	297	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
CCDC164	92749	genome.wustl.edu	37	2	26663299	26663299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145038.2	+1	validated	p.E314D	1.000	132	0%	204	22.5%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TRIM54	57159	genome.wustl.edu	37	2	27528492	27528492	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032546.2	+1	reviewed	p.F259C	1.000	54	1.9%	43	27.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
C2orf16	84226	genome.wustl.edu	37	2	27799865	27799865	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032266.3	+1	validated	p.Q142H	0.015	94	0%	82	23.2%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
ZNF512	84450	genome.wustl.edu	37	2	27844103	27844103	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032434.2	+1	validated	p.K493	1.000	121	0%	102	36.3%	7	14.2%	-	-	-	NULL
CCDC121	79635	genome.wustl.edu	37	2	27850684	27850684	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142683.2	-1	validated	p.E157*	0.001	340	0%	339	13.9%	4	0%	-	-	-	NULL
GPN1	11321	genome.wustl.edu	37	2	27853899	27853899	+	Missense_Mutation	SNP	C	C	A	rs183551437	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007266.3	+1	reviewed	p.R85S	1.000	452	0%	538	23.8%	8	12.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_AAA,HMMPfam_ATP_bind_1,superfamily_SSF52540
SPDYA	245711	genome.wustl.edu	37	2	29052172	29052172	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142634.1	+1	validated	p.R180Q	1.000	158	0%	166	19.3%	0	-	benign(0.027)	tolerated(0.26)	neutral(0.036)	NULL
CLIP4	79745	genome.wustl.edu	37	2	29356672	29356672	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024692.4	+1	validated	p.S173	0.216	268	0%	282	24.8%	2	50%	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
NLRC4	58484	genome.wustl.edu	37	2	32475709	32475709	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000360906	-1	known	p.F408	0.038	102	0%	111	32.4%	2	0%	-	-	-	NULL
TTC27	55622	genome.wustl.edu	37	2	32855714	32855714	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017735.3	+1	provisional	p.E71D	1.000	140	0%	200	17%	6	83.3%	possibly_damaging(0.712)	tolerated(0.15)	deleterious(0.498)	NULL
VIT	5212	genome.wustl.edu	37	2	36970287	36970287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_053276.3	+1	validated	p.D55N	1.000	283	0%	306	26.1%	0	-	benign(0)	tolerated(1)	-	HMMPfam_LCCL,HMMSmart_LCCL,superfamily_LCCL
SULT6B1	391365	genome.wustl.edu	37	2	37410583	37410583	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001032377.1	-1	provisional	p.F91	0.734	224	0%	272	24.3%	0	-	-	-	-	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
PPM1B	5495	genome.wustl.edu	37	2	44445689	44445689	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000409486	+1	known	p.L383V	0.965	183	0%	220	23.6%	0	-	-	-	-	NULL
MSH2	4436	genome.wustl.edu	37	2	47693887	47693887	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000251.1	+1	reviewed	p.R534fs	1.000	-	-	-	-	-	-	-	-	-	HMMPfam_MutS_III,HMMSmart_MUTSd,superfamily_DNA_repair_MutS_domIII,HMMPfam_MutS_IV
EML6	400954	genome.wustl.edu	37	2	55130303	55130303	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001039753.2	+1	validated	p.E1083*	1.000	209	0%	238	14.7%	0	-	-	-	-	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,superfamily_WD40 repeat-like,HMMPfam_WD40
C2orf63	130162	genome.wustl.edu	37	2	55403066	55403066	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152385.2	-1	validated	p.E541*	0.980	365	0.3%	389	30.3%	2	50%	-	-	-	NULL
C2orf63	130162	genome.wustl.edu	37	2	55445026	55445026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152385.2	-1	validated	p.H96N	1.000	425	0%	496	21.6%	0	-	possibly_damaging(0.925)	tolerated(0.12)	deleterious(0.634)	NULL
MTIF2	4528	genome.wustl.edu	37	2	55479759	55479759	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005369.1	-1	reviewed	p.F232Y	1.000	116	0%	184	30.4%	16	37.5%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_GTP_EFTU,superfamily_SSF52540
CCDC85A	114800	genome.wustl.edu	37	2	56611447	56611447	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080433.1	+1	provisional	p.I540S	1.000	263	0%	370	25.7%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	NULL
BCL11A	53335	genome.wustl.edu	37	2	60679729	60679729	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138559.1	-1	reviewed	p.R235*	1.000	189	0%	169	23.1%	1	100%	-	-	-	NULL
REL	5966	genome.wustl.edu	37	2	61149264	61149264	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002908.2	+1	validated	p.I485S	1.000	212	0%	209	25.4%	1	0%	benign(0.138)	tolerated(0.2)	neutral(0.060)	NULL
XPO1	7514	genome.wustl.edu	37	2	61719472	61719472	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003400.3	-1	reviewed	p.E571K	1.000	165	0%	216	31%	21	28.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_ARM-type_fold
ADD2	119	genome.wustl.edu	37	2	70900081	70900081	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001617.3	-1	reviewed	p.S600F	1.000	89	0%	73	17.8%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
CLEC4F	165530	genome.wustl.edu	37	2	71043873	71043873	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173535.2	-1	validated	p.V214M	0.000	357	0%	319	30.4%	0	-	benign(0.004)	tolerated(0.39)	neutral(0.016)	NULL
ATP6V1B1	525	genome.wustl.edu	37	2	71190373	71190373	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001692.3	+1	reviewed	p.R331W	1.000	54	0%	51	29.4%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ATP-synt_ab,superfamily_SSF52540
MPHOSPH10	10199	genome.wustl.edu	37	2	71365755	71365755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005791.1	+1	reviewed	p.R412W	0.874	66	0%	78	11.5%	38	26.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Mpp10
MPHOSPH10	10199	genome.wustl.edu	37	2	71376377	71376377	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005791.1	+1	reviewed	p.K564Q	1.000	124	0%	141	24.1%	37	37.8%	possibly_damaging(0.938)	deleterious(0.03)	deleterious(0.748)	HMMPfam_Mpp10
RAB11FIP5	26056	genome.wustl.edu	37	2	73316058	73316058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015470.2	-1	validated	p.E273K	0.962	28	0%	37	29.7%	7	42.8%	benign(0.033)	tolerated(0.84)	neutral(0.002)	NULL
STAMBP	10617	genome.wustl.edu	37	2	74071968	74071968	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006463.3	+1	reviewed	p.R78*	1.000	200	0%	234	21.4%	8	25%	-	-	-	NULL
MOGS	7841	genome.wustl.edu	37	2	74689130	74689130	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006302.2	-1	reviewed	p.R596W	1.000	144	0.7%	154	25.3%	67	31.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_hydro_63,superfamily_Six-hairpin glycosidases
TCF7L1	83439	genome.wustl.edu	37	2	85529609	85529609	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031283.1	+1	provisional	p.S176	0.970	143	0%	131	25.2%	4	0%	-	-	-	HMMPfam_CTNNB1_binding
RETSAT	54884	genome.wustl.edu	37	2	85570426	85570426	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017750.3	-1	validated	p.N591T	0.970	265	0%	310	16.1%	37	35.1%	probably_damaging(0.969)	tolerated(0.09)	deleterious(0.708)	NULL
SFTPB	6439	genome.wustl.edu	37	2	85890544	85890544	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000428225	-1	known	p.R302W	0.062	62	0%	46	28.3%	0	-	-	-	-	HMMSmart_SM00741,superfamily_Saposin
REEP1	65055	genome.wustl.edu	37	2	86481928	86481928	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022912.2	-1	reviewed	p.F64L	1.000	217	0%	295	15.3%	0	-	benign(0.035)	tolerated(0.4)	neutral(0.018)	HMMPfam_TB2_DP1_HVA22
RNF103	7844	genome.wustl.edu	37	2	86847538	86847538	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005667.2	-1	reviewed	p.E94G	1.000	261	0%	241	27%	16	37.5%	benign(0.001)	tolerated(0.12)	neutral(0.261)	NULL
EIF2AK3	9451	genome.wustl.edu	37	2	88890033	88890033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004836.5	-1	reviewed	p.D365Y	0.000	274	0%	344	16.3%	0	-	possibly_damaging(0.463)	deleterious(0.04)	deleterious(0.501)	superfamily_Quinoprotein alcohol dehydrogenase-like
FAHD2A	51011	genome.wustl.edu	37	2	96078673	96078673	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016044.2	+1	validated	p.E305*	0.998	326	0%	325	26.2%	23	21.7%	-	-	-	HMMPfam_FAA_hydrolase,superfamily_Fumarylacetoacetase_C-rel
SNRNP200	23020	genome.wustl.edu	37	2	96950164	96950164	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014014.3	-1	reviewed	p.R1442C	1.000	176	0.6%	183	27.9%	62	43.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ITPRIPL1	150771	genome.wustl.edu	37	2	96992374	96992374	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178495.5	+1	validated	p.S10Y	0.982	174	0%	143	28%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ANKRD36	375248	genome.wustl.edu	37	2	97871858	97871858	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000461153	+1	known	p.E880G	0.004	360	0%	381	27.8%	2	100%	benign(0.043)	deleterious(0.03)	neutral(0.367)	NULL
UBTFL6	643615	genome.wustl.edu	37	2	98253817	98253817	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001714896.2	-1	model	p.Y145C	1.000	90	0%	82	37.8%	0	-	-	-	-	HMMPfam_HMG_box,HMMSmart_SM00398,superfamily_HMG-box
ACTR1B	10120	genome.wustl.edu	37	2	98274445	98274445	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005735.3	-1	reviewed	p.A296T	0.960	56	0%	51	25.5%	65	49.2%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
TMEM131	23505	genome.wustl.edu	37	2	98543924	98543924	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015348.1	-1	validated	p.E72*	1.000	192	0%	291	22.3%	3	0%	-	-	-	NULL
TSGA10	80705	genome.wustl.edu	37	2	99725357	99725357	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025244.2	-1	validated	p.I50S	1.000	429	0%	438	14.8%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
LYG1	129530	genome.wustl.edu	37	2	99900935	99900935	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_174898.2	-1	validated	p.R169Q	0.762	126	0%	139	33.8%	1	100%	benign(0.065)	tolerated(0.42)	neutral(0.018)	superfamily_Lysozyme-like
REV1	51455	genome.wustl.edu	37	2	100019523	100019523	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016316.2	-1	reviewed	p.K1071N	1.000	251	0%	222	13.1%	3	0%	probably_damaging(0.998)	tolerated(0.5)	deleterious(0.484)	NULL
AFF3	3899	genome.wustl.edu	37	2	100199424	100199424	+	Missense_Mutation	SNP	G	G	A	rs190577667	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001025108.1	-1	reviewed	p.R902W	1.000	426	0%	481	25.8%	1	0%	benign(0.034)	deleterious(0.01)	neutral(0.408)	HMMPfam_AF-4
RGPD3	653489	genome.wustl.edu	37	2	107040265	107040265	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001144013.1	-1	validated	p.Q1386H	1.000	448	0%	511	23.9%	0	-	probably_damaging(0.997)	tolerated(0.06)	deleterious(0.788)	HMMPfam_Ran_BP1,HMMSmart_RanBD,superfamily_SSF50729
RANBP2	5903	genome.wustl.edu	37	2	109384781	109384781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006267.4	+1	reviewed	p.L2596F	0.000	94	0%	73	20.5%	21	42.8%	probably_damaging(0.964)	-	-	NULL
CCDC138	165055	genome.wustl.edu	37	2	109421438	109421438	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144978.1	+1	provisional	p.E277*	1.000	140	0%	174	17.2%	0	-	-	-	-	NULL
NPHP1	4867	genome.wustl.edu	37	2	110936076	110936076	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000272.3	-1	reviewed	p.E85K	1.000	462	0%	531	17.3%	4	75%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112545874	112545874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022662.2	-1	validated	p.S1579Y	1.000	541	0%	749	11.1%	14	0%	probably_damaging(0.983)	tolerated(0.08)	deleterious(0.729)	NULL
ANAPC1	64682	genome.wustl.edu	37	2	112605356	112605356	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000427997	-1	known	p.A114T	0.996	229	0%	255	23.1%	0	-	-	-	-	NULL
DPP10	57628	genome.wustl.edu	37	2	116101408	116101408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020868.3	+1	validated	p.S64L	1.000	309	0%	347	25.1%	1	100%	benign(0.335)	tolerated(0.21)	neutral(0.149)	NULL
EN1	2019	genome.wustl.edu	37	2	119600743	119600743	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001426.3	-1	reviewed	p.R317I	1.000	121	0%	89	10.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like
TMEM37	140738	genome.wustl.edu	37	2	120194936	120194936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_183240.2	+1	validated	p.E165K	0.939	172	0%	153	24.8%	22	22.7%	benign(0.144)	tolerated(0.06)	neutral(0.335)	NULL
CLASP1	23332	genome.wustl.edu	37	2	122217677	122217677	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015282.2	-1	validated	p.L353V	1.000	201	0%	231	30.3%	0	-	possibly_damaging(0.577)	tolerated(0.56)	neutral(0.205)	superfamily_ARM repeat
CLASP1	23332	genome.wustl.edu	37	2	122273244	122273244	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015282.2	-1	validated	p.S214F	1.000	352	0%	410	26.6%	3	0%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	superfamily_ARM repeat
CNTNAP5	129684	genome.wustl.edu	37	2	125367442	125367442	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_130773.2	+1	reviewed	p.I606	0.208	91	1.1%	60	20%	0	-	-	-	-	superfamily_Fibrinogen_a/b/g_C,superfamily_ConA_like_lec_gl
ERCC3	2071	genome.wustl.edu	37	2	128028923	128028923	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000122.1	-1	reviewed	p.R645Q	1.000	198	0%	194	24.2%	15	46.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Helicase_C,HMMSmart_SM00490,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO7B	4648	genome.wustl.edu	37	2	128394398	128394398	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080527.1	+1	provisional	p.K2053	1.000	119	0%	81	14.8%	13	15.3%	-	-	-	NULL
LOC653781	653781	genome.wustl.edu	37	2	131414280	131414280	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_929706.3	+1	model	p.K649N	0.086	429	0.2%	453	12.4%	0	-	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	NULL
GPR148	344561	genome.wustl.edu	37	2	131487111	131487111	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207364.2	+1	validated	p.F129	0.007	94	0%	89	36%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
FAM123C	205147	genome.wustl.edu	37	2	131520126	131520126	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001105193.1	+1	validated	p.R161W	0.998	30	0%	46	26.1%	0	-	benign(0.003)	deleterious(0)	neutral(0.445)	HMMPfam_WTX
POTEE	445582	genome.wustl.edu	37	2	131985926	131985926	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001083538.1	+1	validated	p.E343*	0.077	1693	0.1%	1911	11.6%	0	-	-	-	-	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat
LOC100127989	100127989	genome.wustl.edu	37	2	132294532	132294532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001724172.1	-1	model	p.D41N	0.163	115	0%	96	33.3%	0	-	-	-	-	NULL
NCKAP5	344148	genome.wustl.edu	37	2	133539730	133539730	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207363.2	-1	validated	p.K1552Q	0.949	336	0%	302	37.4%	1	0%	probably_damaging(0.98)	deleterious(0.02)	deleterious(0.807)	NULL
MGAT5	4249	genome.wustl.edu	37	2	135107416	135107416	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002410.3	+1	validated	p.E385K	1.000	355	0%	287	20.6%	5	20%	possibly_damaging(0.942)	tolerated(0.33)	neutral(0.411)	NULL
ACMSD	130013	genome.wustl.edu	37	2	135596289	135596289	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138326.2	+1	validated	p.E13*	1.000	374	0%	406	22.4%	0	-	-	-	-	HMMPfam_Amidohydro_2,superfamily_Metallo-dependent hydrolases
RAB3GAP1	22930	genome.wustl.edu	37	2	135851219	135851219	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012233.2	+1	reviewed	p.G106	0.997	443	0.2%	587	24%	11	9%	-	-	-	NULL
RAB3GAP1	22930	genome.wustl.edu	37	2	135883788	135883788	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012233.2	+1	reviewed	p.E290K	1.000	580	0%	544	29.2%	13	7.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
SPOPL	339745	genome.wustl.edu	37	2	139326627	139326627	+	Missense_Mutation	SNP	C	C	T	rs142534399	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001001664.2	+1	validated	p.R386C	1.000	105	0%	132	23.5%	7	28.5%	benign(0.01)	deleterious(0)	neutral(0.445)	NULL
LRP1B	53353	genome.wustl.edu	37	2	141135836	141135836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018557.2	-1	validated	p.L3517F	0.848	286	0%	351	26.5%	0	-	possibly_damaging(0.832)	tolerated(0.71)	neutral(0.319)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,superfamily_LDL_rcpt_classA_cys-rich
ARHGAP15	55843	genome.wustl.edu	37	2	144525598	144525598	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018460.3	+1	validated	p.S429R	1.000	205	0%	245	20.4%	12	0%	possibly_damaging(0.937)	deleterious(0.02)	deleterious(0.766)	HMMPfam_RhoGAP,HMMSmart_RhoGAP,superfamily_Rho_GAP
NEB	4703	genome.wustl.edu	37	2	152417533	152417533	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004543.4	-1	reviewed	p.K4696	0.802	521	0.2%	628	22.5%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152468834	152468834	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004543.4	-1	reviewed	p.E3648K	0.997	195	0%	209	29.7%	0	-	benign(0.066)	tolerated(0.24)	neutral(0.042)	HMMSmart_SM00227
NEB	4703	genome.wustl.edu	37	2	152507244	152507244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004543.4	-1	reviewed	p.F2357L	0.042	311	0%	292	27.4%	0	-	benign(0.048)	tolerated(0.48)	neutral(0.014)	HMMSmart_SM00227
DAPL1	92196	genome.wustl.edu	37	2	159672323	159672323	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001017920.2	+1	validated	p.R105Q	1.000	264	0%	251	49.8%	7	85.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
TANC1	85461	genome.wustl.edu	37	2	160085346	160085346	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033394.2	+1	validated	p.E1364K	1.000	310	0%	303	25.1%	11	9%	benign(0.122)	deleterious(0.02)	neutral(0.393)	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
BAZ2B	29994	genome.wustl.edu	37	2	160243066	160243066	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013450.2	-1	validated	p.F1090C	1.000	134	0%	182	25.3%	5	20%	possibly_damaging(0.899)	deleterious(0)	deleterious(0.800)	HMMPfam_DDT,HMMSmart_SM00571
LY75	4065	genome.wustl.edu	37	2	160746856	160746856	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002349.2	-1	validated	p.E224K	0.658	187	0%	179	32.4%	1	100%	probably_damaging(0.981)	tolerated(0.28)	neutral(0.457)	HMMSmart_SM00034,superfamily_C-type lectin-like
GCG	2641	genome.wustl.edu	37	2	163003900	163003900	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002054.3	-1	reviewed	p.D73Y	1.000	322	0%	312	21.5%	0	-	possibly_damaging(0.504)	deleterious(0)	deleterious(0.613)	HMMPfam_Hormone_2,HMMSmart_GLUCA,PatternScan_GLUCAGON
FAP	2191	genome.wustl.edu	37	2	163083065	163083065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004460.2	-1	reviewed	p.S53Y	0.122	232	0%	175	21.1%	4	0%	benign(0)	tolerated(0.14)	neutral(0.249)	superfamily_SSF82171
IFIH1	64135	genome.wustl.edu	37	2	163144679	163144679	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022168.2	-1	reviewed	p.S354F	0.960	287	0%	275	25.1%	14	35.7%	possibly_damaging(0.94)	deleterious(0.01)	deleterious(0.790)	HMMPfam_ResIII,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
KCNH7	90134	genome.wustl.edu	37	2	163279813	163279813	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173162.1	-1	reviewed	p.A722	0.001	213	0%	261	21.5%	0	-	-	-	-	NULL
FIGN	55137	genome.wustl.edu	37	2	164466760	164466760	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018086.2	-1	validated	p.R528W	1.000	179	0%	186	21%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_AAA,HMMPfam_AAA,superfamily_SSF52540
SCN1A	6323	genome.wustl.edu	37	2	166854573	166854573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006920.4	-1	reviewed	p.D1473G	1.000	308	0%	378	23.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_SSF81324
SCN9A	6335	genome.wustl.edu	37	2	167163022	167163022	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002977.3	-1	reviewed	p.V155	1.000	352	0%	379	19.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167321980	167321980	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002976.2	-1	validated	p.T311	1.000	199	0%	233	28.8%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
SCN7A	6332	genome.wustl.edu	37	2	167322357	167322357	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002976.2	-1	validated	p.R269*	0.063	359	0.3%	396	24.2%	0	-	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
XIRP2	129446	genome.wustl.edu	37	2	168106476	168106476	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152381.4	+1	validated	p.I2858	0.000	151	0.7%	182	20.3%	0	-	-	-	-	NULL
STK39	27347	genome.wustl.edu	37	2	169023878	169023878	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013233.2	-1	reviewed	p.V121I	0.977	229	0%	330	24.2%	17	29.4%	benign(0.027)	tolerated(0.32)	neutral(0.026)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
CERS6	253782	genome.wustl.edu	37	2	169313014	169313014	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_203463.1	+1	validated	p.V19A	1.000	132	0%	163	25.8%	4	50%	probably_damaging(0.992)	deleterious(0.01)	deleterious(0.853)	NULL
BBS5	129880	genome.wustl.edu	37	2	170361000	170361000	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152384.2	+1	reviewed	p.R312C	1.000	394	0%	410	29.3%	5	80%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DUF1448
KLHL23	151230	genome.wustl.edu	37	2	170592003	170592003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144711.4	+1	validated	p.R160I	1.000	121	0%	121	28.9%	2	50%	probably_damaging(0.982)	tolerated(0.06)	deleterious(0.749)	HMMPfam_BACK
MYO3B	140469	genome.wustl.edu	37	2	171243707	171243707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138995.3	+1	validated	p.S489L	1.000	133	0%	180	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
MYO3B	140469	genome.wustl.edu	37	2	171256757	171256757	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138995.3	+1	validated	p.F617	1.000	397	0%	466	25.3%	0	-	-	-	-	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
GORASP2	26003	genome.wustl.edu	37	2	171807862	171807862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015530.3	+1	reviewed	p.E154K	1.000	202	0%	241	24.1%	49	40.8%	possibly_damaging(0.931)	deleterious(0.03)	deleterious(0.742)	superfamily_PDZ domain-like,HMMPfam_GRASP55_65
RAPGEF4	11069	genome.wustl.edu	37	2	173662258	173662258	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007023.3	+1	validated	p.R72C	1.000	378	0%	396	26%	0	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_cNMP_binding,HMMSmart_SM00100,superfamily_cAMP-binding domain-like
CHRNA1	1134	genome.wustl.edu	37	2	175613538	175613538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001039523.2	-1	reviewed	p.D363N	1.000	270	0%	280	27.5%	0	-	benign(0.005)	tolerated(0.44)	neutral(0.013)	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore
HNRNPA3	220988	genome.wustl.edu	37	2	178081428	178081428	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_194247.2	+1	validated	p.F223C	1.000	698	0%	711	22.9%	217	35.9%	unknown(0)	tolerated(0.13)	-	superfamily_RNA-binding domain RBD
OSBPL6	114880	genome.wustl.edu	37	2	179193072	179193072	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145739.1	+1	reviewed	p.K74	1.000	259	0.4%	308	25.3%	0	-	-	-	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
TTN	7273	genome.wustl.edu	37	2	179402618	179402618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.E30536K	1.000	160	0%	154	26%	1	0%	probably_damaging(0.983)	-	-	HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179424400	179424400	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.S26250Y	1.000	343	0%	364	26.9%	0	-	probably_damaging(0.988)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179426050	179426050	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.S25700*	1.000	387	0%	474	27.8%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179430202	179430202	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.F24316C	1.000	284	0%	318	29.2%	0	-	probably_damaging(0.979)	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179430977	179430977	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.R24058*	1.000	289	0%	308	21.4%	0	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179436930	179436930	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133378.4	-1	reviewed	p.M22075T	1.000	338	0.3%	297	27.3%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179458785	179458785	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133378.4	-1	reviewed	p.R16877K	0.996	405	0%	510	29%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179477168	179477168	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.R14127Q	1.000	403	0%	400	26.8%	1	0%	benign(0.098)	-	-	HMMPfam_fn3,HMMSmart_SM00060
TTN	7273	genome.wustl.edu	37	2	179501307	179501307	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.I11148S	0.995	208	0%	307	25.4%	0	-	benign(0.004)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179506965	179506965	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.S10951	1.000	207	0%	242	21.5%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179516392	179516392	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	e159+1	1.000	512	0.2%	634	29.5%	0	-	-	-	-	-
TTN	7273	genome.wustl.edu	37	2	179588752	179588752	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.F5834	0.997	200	0%	217	25.3%	0	-	-	-	-	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179598566	179598566	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356127	-1	known	p.T3940A	0.969	210	0%	192	26.6%	0	-	unknown(0)	-	-	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set
TTN	7273	genome.wustl.edu	37	2	179606237	179606237	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000342175	-1	known	p.K3737T	0.877	253	0%	324	23.1%	0	-	benign(0.099)	-	-	HMMSmart_SM00409
TTN	7273	genome.wustl.edu	37	2	179611330	179611330	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133379.3	-1	reviewed	p.S5266N	1.000	378	0%	459	27.7%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	HMMSmart_IG,HMMPfam_I-set,superfamily_SSF48726
TTN	7273	genome.wustl.edu	37	2	179644117	179644117	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133379.3	-1	reviewed	p.E1268*	1.000	149	0%	150	16%	0	-	-	-	-	NULL
TTN	7273	genome.wustl.edu	37	2	179647276	179647276	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133379.3	-1	reviewed	p.E1052K	0.998	399	0%	378	28.3%	0	-	benign(0.014)	-	-	NULL
FAM171B	165215	genome.wustl.edu	37	2	187626362	187626362	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_177454.3	+1	validated	p.K431N	0.895	110	0%	133	23.3%	0	-	benign(0.051)	tolerated(0.33)	neutral(0.027)	HMMPfam_UPF0560
DNAH7	56171	genome.wustl.edu	37	2	196642571	196642571	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018897.2	-1	validated	p.Y3673D	0.996	307	0.3%	361	25.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Dynein_heavy
DNAH7	56171	genome.wustl.edu	37	2	196788377	196788377	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018897.2	-1	validated	p.K1256T	0.539	214	0%	264	28.4%	0	-	benign(0.004)	tolerated(0.41)	neutral(0.015)	NULL
GTF3C3	9330	genome.wustl.edu	37	2	197645294	197645294	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012086.2	-1	provisional	p.E403*	0.998	234	0%	340	24.1%	12	8.3%	-	-	-	superfamily_Protein prenylyltransferase
GTF3C3	9330	genome.wustl.edu	37	2	197656092	197656092	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012086.2	-1	provisional	p.A168	0.268	395	0%	473	24.1%	4	0%	-	-	-	HMMSmart_SM00028,superfamily_Protein prenylyltransferase
SF3B1	23451	genome.wustl.edu	37	2	198260869	198260869	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000424674	-1	known	p.R166H	0.796	231	0%	253	24.9%	128	35.1%	-	-	-	superfamily_ARM repeat
HSPD1	3329	genome.wustl.edu	37	2	198359446	198359446	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002156.4	-1	reviewed	p.E181*	1.000	344	0%	380	29.7%	122	1.6%	-	-	-	HMMPfam_Cpn60_TCP1,superfamily_GroEL-ATPase,superfamily_SSF54849
BOLL	66037	genome.wustl.edu	37	2	198646556	198646556	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_197970.2	-1	validated	p.S19A	1.000	480	0%	627	24.4%	0	-	benign(0.019)	tolerated(0.17)	neutral(0.060)	superfamily_SSF54928
PLCL1	5334	genome.wustl.edu	37	2	198950712	198950712	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006226.3	+1	validated	p.R726Q	1.000	487	0%	597	26.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_C2,superfamily_C2_CaLB
SATB2	23314	genome.wustl.edu	37	2	200233326	200233326	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015265.3	-1	reviewed	e5+2	1.000	375	0%	363	25.3%	0	-	-	-	-	-
SGOL2	151246	genome.wustl.edu	37	2	201436758	201436758	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152524.5	+1	validated	p.D563	0.000	96	0%	90	20%	3	0%	-	-	-	NULL
CASP8	841	genome.wustl.edu	37	2	202131223	202131223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080125.1	+1	reviewed	p.R64I	0.000	150	0%	128	21.1%	4	25%	possibly_damaging(0.456)	tolerated(0.05)	deleterious(0.495)	HMMPfam_DED,HMMSmart_SM00031,superfamily_DEATH domain
TRAK2	66008	genome.wustl.edu	37	2	202262225	202262225	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015049.2	-1	validated	p.R257C	1.000	433	0%	436	27.1%	8	37.5%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_HAP1_N
ZDBF2	57683	genome.wustl.edu	37	2	207169846	207169846	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020923.1	+1	validated	p.R198	0.007	138	0%	116	28.4%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207173411	207173411	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020923.1	+1	validated	p.E1387*	0.020	123	0%	129	24%	0	-	-	-	-	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207173631	207173631	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020923.1	+1	validated	p.V1460A	0.511	150	0%	175	17.7%	1	0%	probably_damaging(0.998)	tolerated(0.36)	deleterious(0.494)	NULL
ZDBF2	57683	genome.wustl.edu	37	2	207175850	207175850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020923.1	+1	validated	p.L2200I	0.006	94	0%	116	25%	0	-	benign(0.189)	deleterious(0)	neutral(0.462)	NULL
DYTN	391475	genome.wustl.edu	37	2	207516543	207516543	+	Nonstop_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001093730.1	-1	provisional	p.*579L	1.000	86	0%	96	20.8%	0	-	-	-	-	NULL
FASTKD2	22868	genome.wustl.edu	37	2	207651463	207651463	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001136193.1	+1	reviewed	p.F478	0.987	461	0%	499	26.9%	8	62.5%	-	-	-	HMMPfam_FAST_1
CREB1	1385	genome.wustl.edu	37	2	208461657	208461657	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_134442.3	+1	reviewed	p.R301C	1.000	188	0%	190	25.3%	7	14.2%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMSmart_SM00338,PatternScan_BZIP_BASIC,HMMPfam_bZIP_1
UNC80	285175	genome.wustl.edu	37	2	210745695	210745695	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032504.1	+1	validated	p.N1331	1.000	264	0%	269	25.3%	0	-	-	-	-	NULL
UNC80	285175	genome.wustl.edu	37	2	210860235	210860235	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032504.1	+1	validated	p.E3231D	1.000	145	0%	165	21.2%	0	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
SPAG16	79582	genome.wustl.edu	37	2	214204921	214204921	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024532.3	+1	validated	p.E191*	1.000	90	0%	115	24.3%	1	0%	-	-	-	superfamily_WD40 repeat-like
SPAG16	79582	genome.wustl.edu	37	2	215274994	215274994	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024532.3	+1	validated	p.I617M	0.101	283	0%	287	29.3%	0	-	benign(0.063)	tolerated(0.19)	neutral(0.054)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ABCA12	26154	genome.wustl.edu	37	2	215823018	215823018	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173076.2	-1	reviewed	p.N2034H	1.000	311	0%	444	24.5%	7	14.2%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
ABCA12	26154	genome.wustl.edu	37	2	215846946	215846946	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173076.2	-1	reviewed	p.R1515Q	1.000	278	0.4%	352	27.3%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ABCA12	26154	genome.wustl.edu	37	2	215882815	215882815	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173076.2	-1	reviewed	p.E567*	1.000	489	0%	476	23.5%	0	-	-	-	-	NULL
FN1	2335	genome.wustl.edu	37	2	216279664	216279664	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_212482.1	-1	reviewed	p.E613K	1.000	154	0%	171	24%	36	0%	benign(0.002)	deleterious(0.05)	neutral(0.345)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
FN1	2335	genome.wustl.edu	37	2	216289985	216289985	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_212482.1	-1	reviewed	p.R290C	0.610	72	0%	102	27.5%	32	0%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
CCDC108	255101	genome.wustl.edu	37	2	219888010	219888010	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_194302.2	-1	provisional	p.F913	0.983	99	0%	103	26.2%	0	-	-	-	-	superfamily_PapD-like
CCDC108	255101	genome.wustl.edu	37	2	219888959	219888959	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_194302.2	-1	provisional	p.G791	0.000	67	0%	63	27%	0	-	-	-	-	superfamily_PapD-like
SLC23A3	151295	genome.wustl.edu	37	2	220029041	220029042	+	In_Frame_Ins	INS	-	-	CCA	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001144890.1	-1	validated	p.404in_frame_insV	0.505:0.896	-	-	-	-	-	-	-	-	-	HMMPfam_Xan_ur_permease
ABCB6	10058	genome.wustl.edu	37	2	220081386	220081386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005689.1	-1	reviewed	p.Y286D	1.000	62	0%	51	23.5%	13	69.2%	benign(0.424)	tolerated(0.2)	neutral(0.186)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
PTPRN	5798	genome.wustl.edu	37	2	220167214	220167214	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002846.2	-1	reviewed	e6-1	1.000	60	0%	56	12.5%	0	-	-	-	-	-
GMPPA	29926	genome.wustl.edu	37	2	220370456	220370456	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013335.2	+1	reviewed	p.P291	0.752	211	0.5%	189	24.3%	60	43.3%	-	-	-	HMMPfam_Hexapep,superfamily_Trimeric LpxA-like enzymes
DOCK10	55619	genome.wustl.edu	37	2	225662609	225662609	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000409802	-1	known	p.Q254K	1.000	190	0%	197	25.9%	5	0%	-	-	-	NULL
SP140L	93349	genome.wustl.edu	37	2	231223688	231223688	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138402.4	+1	provisional	p.D94N	0.460	316	0%	260	22.7%	6	0%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Sp100
SP100	6672	genome.wustl.edu	37	2	231404056	231404056	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000431952	+1	known	p.L97I	0.222	170	0%	224	24.1%	4	0%	-	-	-	HMMSmart_SM00249,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD
PDE6D	5147	genome.wustl.edu	37	2	232597735	232597735	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002601.2	-1	validated	p.V127A	1.000	219	0%	286	19.9%	24	37.5%	possibly_damaging(0.602)	deleterious(0)	deleterious(0.653)	HMMPfam_GMP_PDE_delta,superfamily_E set domains
DIS3L2	129563	genome.wustl.edu	37	2	232995430	232995430	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152383.4	+1	validated	e6+1	1.000	195	0%	260	12.7%	1	100%	-	-	-	-
TIGD1	200765	genome.wustl.edu	37	2	233413193	233413193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145702.1	-1	validated	p.R467I	0.962	18	0%	16	31.2%	2	50%	possibly_damaging(0.951)	deleterious(0)	deleterious(0.839)	NULL
GIGYF2	26058	genome.wustl.edu	37	2	233655826	233655826	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001103147.1	+1	reviewed	p.E369*	1.000	154	0%	182	28%	4	0%	-	-	-	NULL
USP40	55230	genome.wustl.edu	37	2	234428237	234428237	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000452724	-1	known	p.F96	0.035	179	0%	235	26.4%	0	-	-	-	-	NULL
UGT1A8	54576	genome.wustl.edu	37	2	234527114	234527114	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019076.4	+1	reviewed	p.R254Q	0.026	300	0%	267	24.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT1A5	54579	genome.wustl.edu	37	2	234621899	234621899	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019078.1	+1	reviewed	p.E88K	0.009	243	0%	249	20.5%	0	-	benign(0.004)	tolerated(0.08)	neutral(0.300)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
LRRFIP1	9208	genome.wustl.edu	37	2	238667390	238667390	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001137550.1	+1	validated	p.E415*	1.000	247	0%	289	28.7%	0	-	-	-	-	HMMPfam_DUF2051
RBM44	375316	genome.wustl.edu	37	2	238727165	238727165	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080504.2	+1	validated	p.M536L	0.000	91	0%	120	19.2%	0	-	benign(0.002)	tolerated(0.44)	neutral(0.013)	NULL
RBM44	375316	genome.wustl.edu	37	2	238737891	238737891	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080504.2	+1	validated	p.D879N	0.511	273	0%	347	17.6%	0	-	benign(0.345)	tolerated(0.6)	neutral(0.114)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
ILKAP	80895	genome.wustl.edu	37	2	239098614	239098614	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030768.2	-1	reviewed	e4-1	1.000	411	0%	466	26%	2	50%	-	-	-	-
ANKMY1	51281	genome.wustl.edu	37	2	241446976	241446976	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016552.2	-1	validated	e11+1	1.000	85	0%	96	25%	0	-	-	-	-	-
CAPN10	11132	genome.wustl.edu	37	2	241528860	241528860	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_023083.2	+1	reviewed	p.A81V	0.992	73	0%	52	36.5%	6	0%	probably_damaging(0.991)	tolerated(0.2)	deleterious(0.493)	HMMPfam_Peptidase_C2,HMMSmart_SM00230,superfamily_Cysteine proteinases
AGXT	189	genome.wustl.edu	37	2	241808602	241808602	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000030.2	+1	reviewed	p.K61E	1.000	116	0.9%	116	12.9%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Aminotran_5,superfamily_PLP-dependent transferases
HDLBP	3069	genome.wustl.edu	37	2	242176062	242176062	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005336.3	-1	validated	p.E958*	1.000	249	0%	245	26.9%	223	5.3%	-	-	-	HMMSmart_KH,superfamily_SSF54791
HDLBP	3069	genome.wustl.edu	37	2	242196178	242196178	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005336.3	-1	validated	p.V165A	1.000	683	0%	652	25.9%	69	53.6%	probably_damaging(0.96)	deleterious(0)	deleterious(0.848)	HMMSmart_KH,HMMPfam_KH_1,superfamily_SSF54791
CHL1	10752	genome.wustl.edu	37	3	369910	369910	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006614.2	+1	reviewed	p.S86	0.004	344	0%	456	21.7%	1	0%	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
CNTN6	27255	genome.wustl.edu	37	3	1443184	1443184	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014461.2	+1	reviewed	p.E924	0.982	386	0%	458	22.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_FN3,superfamily_FN_III-like
CNTN4	152330	genome.wustl.edu	37	3	2908473	2908473	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_175607.1	+1	reviewed	p.S164	0.017	246	0%	279	24%	1	0%	-	-	-	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
ITPR1	3708	genome.wustl.edu	37	3	4699832	4699832	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001099952.2	+1	reviewed	p.R341*	0.457	261	0%	302	28.1%	2	0%	-	-	-	HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMSmart_SM00472
ITPR1	3708	genome.wustl.edu	37	3	4759058	4759058	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000356617	+1	known	p.S1700F	1.000	667	0%	720	24.9%	0	-	benign(0.006)	tolerated(0.61)	neutral(0.004)	NULL
ITPR1	3708	genome.wustl.edu	37	3	4854915	4854915	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001099952.2	+1	reviewed	p.E2472*	0.821	247	0%	231	24.2%	4	0%	-	-	-	HMMPfam_Ion_trans
C3orf32	51066	genome.wustl.edu	37	3	8671411	8671411	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015931.1	-1	predicted	p.E154G	1.000	136	0%	122	31.1%	0	-	benign(0.026)	tolerated(0.5)	neutral(0.011)	NULL
ATP2B2	491	genome.wustl.edu	37	3	10420036	10420036	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001001331.2	-1	reviewed	p.G367	0.036	57	0%	44	11.4%	0	-	-	-	-	HMMPfam_E1-E2_ATPase,superfamily_Calcium ATPase transmembrane domain M
ATG7	10533	genome.wustl.edu	37	3	11406154	11406154	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000446110	+1	known	p.Q8*	1.000	292	0%	333	28.5%	22	22.7%	-	-	-	NULL
EFHB	151651	genome.wustl.edu	37	3	19975022	19975022	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144715.3	-1	validated	p.F163	0.000	142	0%	143	32.2%	0	-	-	-	-	NULL
THRB	7068	genome.wustl.edu	37	3	24164384	24164384	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000461.4	-1	reviewed	p.F459	0.511	194	0%	157	32.5%	1	0%	-	-	-	superfamily_Nuclear receptor ligand-binding domain
NGLY1	55768	genome.wustl.edu	37	3	25761670	25761670	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018297.3	-1	reviewed	p.R542*	0.951	183	0%	205	29.8%	23	8.6%	-	-	-	HMMPfam_DUF750,HMMSmart_SM00613
NEK10	152110	genome.wustl.edu	37	3	27213352	27213352	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000396636	-1	known	p.R930I	1.000	300	0%	252	20.2%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
GADL1	339896	genome.wustl.edu	37	3	30896235	30896235	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207359.2	-1	validated	p.Y128*	0.997	390	0%	402	25.4%	0	-	-	-	-	HMMPfam_Pyridoxal_deC,superfamily_PLP-dependent transferases
STAC	6769	genome.wustl.edu	37	3	36526481	36526481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003149.1	+1	provisional	p.R168W	1.000	542	0%	469	21.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GOLGA4	2803	genome.wustl.edu	37	3	37365640	37365640	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002078.4	+1	reviewed	p.K755Q	0.959	101	0%	124	17.7%	3	66.6%	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	NULL
OXSR1	9943	genome.wustl.edu	37	3	38291486	38291486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005109.2	+1	reviewed	p.R451Q	1.000	202	0%	202	20.8%	5	40%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
HHATL	57467	genome.wustl.edu	37	3	42740595	42740595	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020707.3	-1	validated	p.R73C	1.000	78	0%	117	29.1%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
HIGD1A	25994	genome.wustl.edu	37	3	42826791	42826791	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001099668.1	-1	validated	p.R99Q	0.965	220	0%	272	24.3%	164	42%	benign(0.005)	tolerated(0.38)	neutral(0.018)	NULL
ZNF662	389114	genome.wustl.edu	37	3	42956403	42956403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134656.1	+1	validated	p.E306*	0.976	144	0%	191	12.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
C3orf77	375337	genome.wustl.edu	37	3	44284432	44284432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145030.1	+1	validated	p.S145L	0.230	116	0.9%	129	22.5%	0	-	probably_damaging(0.957)	deleterious(0)	deleterious(0.845)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44369790	44369790	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145030.1	+1	validated	p.R1575Q	1.000	216	0%	242	25.2%	0	-	probably_damaging(0.97)	tolerated(0.14)	deleterious(0.662)	NULL
C3orf77	375337	genome.wustl.edu	37	3	44373423	44373423	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145030.1	+1	validated	p.L1667V	0.971	460	0%	470	15.3%	0	-	probably_damaging(0.99)	deleterious(0.03)	deleterious(0.806)	NULL
ZNF852	285346	genome.wustl.edu	37	3	44541912	44541912	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000436261	-1	known	p.D119	0.009	93	0%	128	14.8%	1	0%	-	-	-	NULL
ZNF167	55888	genome.wustl.edu	37	3	44609843	44609843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018651.2	+1	validated	p.K243N	0.683	229	0%	217	25.8%	0	-	benign(0.15)	deleterious(0.01)	neutral(0.419)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF660	285349	genome.wustl.edu	37	3	44636461	44636461	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173658.1	+1	provisional	p.R259Q	0.609	126	0%	153	20.3%	0	-	possibly_damaging(0.71)	deleterious(0)	deleterious(0.701)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF197	10168	genome.wustl.edu	37	3	44683758	44683758	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006991.3	+1	reviewed	p.F379C	0.999	79	0%	89	34.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
CDCP1	64866	genome.wustl.edu	37	3	45136960	45136960	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022842.3	-1	reviewed	p.F375	0.992	297	0.3%	355	17.7%	15	26.6%	-	-	-	NULL
CXCR6	10663	genome.wustl.edu	37	3	45988860	45988860	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006564.1	+1	validated	p.R296Q	0.956	227	0.4%	208	26.4%	19	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	superfamily_Family A G protein-coupled receptor-like
FYCO1	79443	genome.wustl.edu	37	3	46008280	46008280	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024513.2	-1	validated	p.S849L	0.144	108	0.9%	93	28%	7	28.5%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
CCR2	729230	genome.wustl.edu	37	3	46399101	46399101	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001123041.2	+1	validated	p.Y28C	0.000	306	0%	290	25.9%	3	0%	possibly_damaging(0.492)	tolerated(0.09)	neutral(0.461)	superfamily_Family A G protein-coupled receptor-like
SETD2	29072	genome.wustl.edu	37	3	47163532	47163532	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014159.6	-1	reviewed	p.N865S	0.767	100	0%	90	25.6%	3	0%	possibly_damaging(0.882)	deleterious(0)	deleterious(0.789)	NULL
KLHL18	23276	genome.wustl.edu	37	3	47361148	47361148	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025010.4	+1	validated	p.G45	0.996	296	0%	338	27.2%	2	50%	-	-	-	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
PRKAR2A	5576	genome.wustl.edu	37	3	48793859	48793859	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004157.2	-1	reviewed	p.F298V	1.000	369	0%	435	30.3%	2	0%	possibly_damaging(0.476)	deleterious(0)	deleterious(0.602)	HMMPfam_cNMP_binding,HMMSmart_cNMP,PatternScan_CNMP_BINDING_1,superfamily_cNMP_binding
ARIH2	10425	genome.wustl.edu	37	3	49017843	49017843	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006321.2	+1	provisional	p.E391K	1.000	268	0%	316	24.7%	18	44.4%	benign(0.001)	tolerated(0.77)	neutral(0.001)	NULL
C3orf62	375341	genome.wustl.edu	37	3	49308863	49308863	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198562.2	-1	validated	p.R185Q	1.000	127	0%	123	23.6%	4	25%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
USP4	7375	genome.wustl.edu	37	3	49343264	49343264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003363.3	-1	validated	p.E338K	1.000	223	0.9%	289	26%	16	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UCH,superfamily_Cysteine proteinases
RHOA	387	genome.wustl.edu	37	3	49397782	49397782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001664.2	-1	validated	p.A148T	1.000	905	0.1%	1001	27.7%	364	27.4%	benign(0.007)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
MST1R	4486	genome.wustl.edu	37	3	49927420	49927420	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002447.2	-1	validated	p.D1295G	1.000	244	0%	288	23.3%	40	47.5%	possibly_damaging(0.859)	deleterious(0)	deleterious(0.776)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
CACNA2D2	9254	genome.wustl.edu	37	3	50416421	50416421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005505.1	-1	reviewed	p.R422C	1.000	118	0%	121	29.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
DOCK3	1795	genome.wustl.edu	37	3	51251600	51251600	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004947.3	+1	validated	p.R392W	1.000	389	0.3%	438	27.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RAD54L2	23132	genome.wustl.edu	37	3	51624446	51624446	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015106.2	+1	validated	p.E4K	1.000	264	0%	348	26.7%	3	66.6%	unknown(0)	deleterious(0)	-	NULL
IQCF2	389123	genome.wustl.edu	37	3	51895692	51895692	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_203424.1	+1	validated	p.R4*	0.000	232	0%	276	30.4%	0	-	-	-	-	NULL
PARP3	10039	genome.wustl.edu	37	3	51978481	51978481	+	Missense_Mutation	SNP	C	C	T	rs146036726	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001003931.2	+1	reviewed	p.R137W	0.954	88	0%	120	30%	28	42.8%	benign(0)	tolerated(0.06)	neutral(0.323)	HMMPfam_WGR,HMMSmart_WGR
NISCH	11188	genome.wustl.edu	37	3	52510607	52510607	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007184.3	+1	validated	p.E304K	1.000	87	0%	71	22.5%	20	20%	benign(0.007)	tolerated(0.09)	neutral(0.296)	HMMSmart_SM00365,superfamily_Outer arm dynein light chain 1
STAB1	23166	genome.wustl.edu	37	3	52554134	52554134	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015136.2	+1	reviewed	p.E1804K	0.926	130	0%	88	25%	20	0%	benign(0.006)	tolerated(1)	-	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
ITIH3	3699	genome.wustl.edu	37	3	52831850	52831850	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002217.3	+1	validated	p.F189	0.878	160	0%	169	20.1%	0	-	-	-	-	NULL
ACTR8	93973	genome.wustl.edu	37	3	53914096	53914096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022899.4	-1	validated	p.S55L	1.000	305	0%	375	20%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
CACNA2D3	55799	genome.wustl.edu	37	3	54604111	54604111	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018398.2	+1	reviewed	p.D290Y	1.000	361	0%	351	25.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
PXK	54899	genome.wustl.edu	37	3	58410681	58410681	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000479134	+1	known	p.S311L	0.972	52	0%	77	26%	11	36.3%	-	-	-	NULL
PTPRG	5793	genome.wustl.edu	37	3	62189172	62189172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002841.3	+1	reviewed	p.S568L	0.314	63	0%	77	26%	3	0%	benign(0.032)	deleterious(0)	neutral(0.446)	NULL
CADPS	8618	genome.wustl.edu	37	3	62739163	62739163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003716.3	-1	reviewed	p.L281I	1.000	100	0%	86	41.9%	1	0%	benign(0.08)	deleterious(0)	neutral(0.450)	NULL
KBTBD8	84541	genome.wustl.edu	37	3	67053666	67053666	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032505.2	+1	validated	p.R66L	1.000	295	0%	340	24.7%	1	0%	probably_damaging(0.98)	deleterious(0.05)	deleterious(0.769)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
C3orf64	285203	genome.wustl.edu	37	3	69054290	69054290	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173654.1	-1	provisional	e4+1	1.000	247	0%	257	21.4%	0	-	-	-	-	-
FOXP1	27086	genome.wustl.edu	37	3	71015098	71015098	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032682.4	-1	reviewed	p.E611G	1.000	431	0%	432	31.5%	23	26%	possibly_damaging(0.8)	deleterious(0)	deleterious(0.746)	NULL
FOXP1	27086	genome.wustl.edu	37	3	71019936	71019936	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032682.4	-1	reviewed	p.N558S	1.000	220	0%	251	21.9%	9	55.5%	benign(0.322)	tolerated(0.06)	neutral(0.423)	HMMPfam_Fork_head
PROS1	5627	genome.wustl.edu	37	3	93595919	93595919	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000313.3	-1	reviewed	p.S587	0.000	309	0%	329	33.7%	8	0%	-	-	-	HMMSmart_LamG,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2
PROS1	5627	genome.wustl.edu	37	3	93619656	93619656	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000313.3	-1	reviewed	p.S240Y	0.007	330	0%	445	27%	7	0%	possibly_damaging(0.843)	deleterious(0)	deleterious(0.768)	HMMSmart_EGF_CA,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_SSF57196
EPHA6	285220	genome.wustl.edu	37	3	97356810	97356810	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080448.2	+1	provisional	p.H890N	1.000	250	0%	287	23%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_TYR,superfamily_Protein kinase-like (PK-like)
OR5H14	403273	genome.wustl.edu	37	3	97869154	97869154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005514.1	+1	provisional	p.D309N	0.015	140	1.4%	166	22.9%	0	-	benign(0)	tolerated(1)	-	NULL
OR5K1	26339	genome.wustl.edu	37	3	98189188	98189188	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004736.2	+1	provisional	p.F256L	0.848	430	0%	410	25.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_SSF81321
GPR128	84873	genome.wustl.edu	37	3	100387800	100387800	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032787.2	+1	validated	p.K663Q	0.964	403	0%	465	20.4%	0	-	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_7tm_2
ABI3BP	25890	genome.wustl.edu	37	3	100583656	100583656	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000398284	-1	known	p.F362V	0.001	165	0%	216	36.1%	0	-	-	-	-	NULL
FAM55C	91775	genome.wustl.edu	37	3	101520480	101520480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134456.1	+1	validated	p.Q165H	0.998	357	0%	404	20%	3	0%	benign(0.006)	tolerated(0.14)	neutral(0.249)	HMMPfam_Neurexophilin,superfamily_E set domains
MORC1	27136	genome.wustl.edu	37	3	108682456	108682456	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014429.3	-1	reviewed	e27-1	1.000	294	0.3%	275	29.1%	0	-	-	-	-	-
MORC1	27136	genome.wustl.edu	37	3	108751619	108751619	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014429.3	-1	reviewed	p.E505*	0.992	146	0.7%	167	22.8%	0	-	-	-	-	HMMPfam_zf-CW
MORC1	27136	genome.wustl.edu	37	3	108782040	108782040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014429.3	-1	reviewed	p.F285C	0.982	288	0%	354	25.4%	0	-	probably_damaging(0.989)	deleterious(0.05)	deleterious(0.785)	NULL
TAGLN3	29114	genome.wustl.edu	37	3	111719690	111719690	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008272.1	+1	validated	p.K84N	1.000	182	0%	184	25.5%	0	-	benign(0.001)	deleterious(0.01)	neutral(0.406)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
C3orf52	79669	genome.wustl.edu	37	3	111821687	111821687	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024616.2	+1	validated	p.T91P	0.127	357	0%	384	17.4%	1	100%	possibly_damaging(0.63)	deleterious(0)	deleterious(0.664)	NULL
SLC9A10	285335	genome.wustl.edu	37	3	111997697	111997697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_183061.1	-1	validated	p.R66I	0.000	245	0%	322	22.7%	0	-	benign(0)	tolerated(0.2)	neutral(0.049)	HMMPfam_Na_H_Exchanger
KIAA2018	205717	genome.wustl.edu	37	3	113375352	113375352	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001009899.2	-1	validated	p.A1726V	0.407	177	0%	164	21.3%	2	50%	benign(0.036)	tolerated(0.1)	neutral(0.288)	NULL
GRAMD1C	54762	genome.wustl.edu	37	3	113601666	113601666	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017577.4	+1	validated	p.V176A	0.970	657	0%	739	19.5%	2	100%	benign(0.054)	tolerated(0.81)	neutral(0.004)	NULL
TIMMDC1	51300	genome.wustl.edu	37	3	119236128	119236128	+	Nonsense_Mutation	SNP	C	C	T	rs149481081	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016589.3	+1	validated	p.R225*	0.001	206	0%	248	24.6%	108	43.5%	-	-	-	NULL
KPNA1	3836	genome.wustl.edu	37	3	122186266	122186266	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002264.3	-1	reviewed	p.R47Q	1.000	451	0%	446	25.1%	12	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_IBB,superfamily_ARM repeat
PARP9	83666	genome.wustl.edu	37	3	122255035	122255035	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031458.2	-1	validated	p.R722I	0.663	218	0%	210	25.7%	67	38.8%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_PARP,superfamily_ADP-ribosylation
SEMA5B	54437	genome.wustl.edu	37	3	122667448	122667448	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001031702.2	-1	validated	p.V78A	0.020	33	0%	37	21.6%	3	0%	benign(0.053)	deleterious(0.03)	neutral(0.368)	NULL
ADCY5	111	genome.wustl.edu	37	3	123036942	123036942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_183357.1	-1	validated	p.R760Q	1.000	167	0%	203	19.2%	1	0%	probably_damaging(0.972)	tolerated(0.38)	neutral(0.431)	HMMPfam_DUF1053
MYLK	4638	genome.wustl.edu	37	3	123337604	123337604	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_053025.3	-1	reviewed	p.Q1794	0.992	207	0%	247	27.1%	16	0%	-	-	-	NULL
MCM2	4171	genome.wustl.edu	37	3	127339935	127339935	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004526.2	+1	reviewed	p.S823*	0.852	203	0%	170	26.5%	27	3.7%	-	-	-	superfamily_SSF52540
SEC61A1	29927	genome.wustl.edu	37	3	127775657	127775657	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013336.3	+1	reviewed	p.R109Q	1.000	122	0%	151	35.1%	67	35.8%	possibly_damaging(0.874)	deleterious(0.01)	deleterious(0.745)	HMMPfam_SecY,superfamily_Preprotein translocase SecY subunit
GATA2	2624	genome.wustl.edu	37	3	128200710	128200710	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145661.1	-1	reviewed	p.N365	1.000	84	0%	77	35.1%	10	40%	-	-	-	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,superfamily_SSF57716
ACAD9	28976	genome.wustl.edu	37	3	128598646	128598646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014049.4	+1	reviewed	p.A38T	0.318	49	0%	40	22.5%	14	35.7%	possibly_damaging(0.748)	deleterious(0)	deleterious(0.719)	NULL
AMOTL2	51421	genome.wustl.edu	37	3	134086349	134086349	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016201.2	-1	reviewed	p.R344H	0.530	75	0%	33	42.4%	9	22.2%	possibly_damaging(0.938)	deleterious(0.01)	deleterious(0.789)	NULL
EPHB1	2047	genome.wustl.edu	37	3	134851574	134851574	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004441.4	+1	reviewed	p.R327H	1.000	89	0%	108	26.9%	0	-	probably_damaging(0.996)	tolerated(0.11)	deleterious(0.733)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PPP2R3A	5523	genome.wustl.edu	37	3	135797264	135797264	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002718.3	+1	reviewed	p.S867L	0.998	183	0%	240	25.4%	4	75%	benign(0)	tolerated(1)	-	superfamily_EF-hand
MSL2	55167	genome.wustl.edu	37	3	135871352	135871352	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018133.3	-1	validated	p.D124A	0.998	336	0%	406	24.1%	6	16.6%	possibly_damaging(0.915)	tolerated(0.49)	neutral(0.377)	NULL
LOC256374	256374	genome.wustl.edu	37	3	138363394	138363394	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_170597.7	-1	model	p.K44R	1.000	55	0%	76	18.4%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
LOC256374	256374	genome.wustl.edu	37	3	138363491	138363491	+	Missense_Mutation	SNP	C	C	T	rs191635839	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_170597.7	-1	model	p.V12I	0.035	47	0%	31	22.6%	0	-	-	-	-	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like
MRPS22	56945	genome.wustl.edu	37	3	139062918	139062918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020191.2	+1	reviewed	p.S17Y	0.000	146	0%	109	11%	15	6.6%	benign(0.293)	deleterious(0)	deleterious(0.535)	NULL
ZIC4	84107	genome.wustl.edu	37	3	147120535	147120535	+	Missense_Mutation	SNP	C	C	T	rs148365070	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000383075	-1	known	p.R17Q	1.000	296	0%	300	31.7%	0	-	possibly_damaging(0.756)	tolerated(0.34)	neutral(0.302)	NULL
HLTF	6596	genome.wustl.edu	37	3	148782627	148782627	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003071.3	-1	reviewed	p.M339I	0.063	706	0%	919	23.8%	3	0%	benign(0)	tolerated(1)	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
HPS3	84343	genome.wustl.edu	37	3	148872896	148872896	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032383.3	+1	reviewed	p.S468L	1.000	271	0.4%	280	29.6%	3	0%	possibly_damaging(0.807)	deleterious(0.01)	deleterious(0.710)	NULL
CP	1356	genome.wustl.edu	37	3	148894139	148894139	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000096.3	-1	reviewed	p.E1027*	0.648	332	0%	340	24.1%	5	20%	-	-	-	superfamily_Cupredoxins,HMMPfam_Cu-oxidase_2
CP	1356	genome.wustl.edu	37	3	148896322	148896322	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000096.3	-1	reviewed	p.F920L	1.000	418	0%	441	21.1%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Cupredoxins
WWTR1	25937	genome.wustl.edu	37	3	149374826	149374826	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015472.4	-1	validated	p.S90P	1.000	14	0%	17	41.2%	1	0%	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
SUCNR1	56670	genome.wustl.edu	37	3	151599144	151599144	+	Silent	SNP	C	C	T	rs140738447	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033050.4	+1	reviewed	p.V271	0.000	239	0%	294	27.9%	1	0%	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
SMC4	10051	genome.wustl.edu	37	3	160150988	160150988	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001002800.1	+1	validated	p.F1235L	1.000	436	0%	481	31%	17	35.2%	benign(0.001)	tolerated(0.68)	neutral(0.002)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM59	286827	genome.wustl.edu	37	3	160156383	160156383	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173084.2	-1	validated	p.E197*	1.000	163	0%	149	23.5%	1	0%	-	-	-	NULL
SPTSSB	165679	genome.wustl.edu	37	3	161063940	161063940	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001040100.1	-1	validated	p.R58C	1.000	142	0%	214	24.8%	9	22.2%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
BCHE	590	genome.wustl.edu	37	3	165547467	165547467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000055.2	-1	reviewed	p.R452Q	1.000	224	0.4%	201	32.8%	0	-	possibly_damaging(0.721)	deleterious(0.04)	deleterious(0.611)	HMMPfam_COesterase,superfamily_SSF53474
ZBBX	79740	genome.wustl.edu	37	3	167000193	167000193	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024687.2	-1	validated	p.R657L	0.001	264	0%	280	19.6%	0	-	possibly_damaging(0.738)	deleterious(0)	deleterious(0.715)	NULL
ARPM1	84517	genome.wustl.edu	37	3	169485701	169485701	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032487.4	-1	validated	p.E213A	1.000	362	0%	407	26.3%	3	33.3%	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
LRRIQ4	344657	genome.wustl.edu	37	3	169550828	169550828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080460.1	+1	provisional	p.L463V	0.037	148	0%	199	25.1%	0	-	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_LRR_1,superfamily_SSF52058
SLC7A14	57709	genome.wustl.edu	37	3	170185015	170185015	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020949.2	-1	validated	p.E715G	1.000	114	0%	106	15.1%	0	-	benign(0.001)	tolerated(0.11)	neutral(0.272)	NULL
SLC2A2	6514	genome.wustl.edu	37	3	170732471	170732471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000340.1	-1	reviewed	p.R53Q	0.336	407	0%	504	22.8%	0	-	probably_damaging(0.988)	deleterious(0.02)	deleterious(0.821)	HMMPfam_Sugar_tr,superfamily_MFS_gen_substrate_transporter
PEX5L	51555	genome.wustl.edu	37	3	179519713	179519713	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016559.1	-1	provisional	p.R595K	0.997	205	0%	246	28.9%	0	-	benign(0.343)	tolerated(0.19)	neutral(0.158)	superfamily_TPR-like
PEX5L	51555	genome.wustl.edu	37	3	179519819	179519819	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016559.1	-1	provisional	p.E560*	1.000	213	0%	206	34%	0	-	-	-	-	HMMPfam_TPR_1,HMMSmart_SM00028,superfamily_TPR-like
YEATS2	55689	genome.wustl.edu	37	3	183515763	183515763	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018023.4	+1	validated	p.T1050	0.004	223	0%	232	23.7%	6	16.6%	-	-	-	NULL
LIPH	200879	genome.wustl.edu	37	3	185229439	185229439	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_139248.2	-1	reviewed	p.R381	0.993	299	0%	380	30%	3	66.6%	-	-	-	NULL
IGF2BP2	10644	genome.wustl.edu	37	3	185376161	185376161	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006548.4	-1	reviewed	p.H413N	1.000	336	0%	477	26.2%	3	100%	benign(0.03)	tolerated(0.33)	neutral(0.026)	NULL
MASP1	5648	genome.wustl.edu	37	3	186965163	186965163	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001031849.2	-1	reviewed	p.I367	0.476	430	0%	509	22.4%	0	-	-	-	-	NULL
ATP13A5	344905	genome.wustl.edu	37	3	193019085	193019085	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198505.2	-1	provisional	p.A897V	1.000	180	0%	213	11.3%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF81665
HES1	3280	genome.wustl.edu	37	3	193854182	193854182	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005524.2	+1	reviewed	p.I5L	1.000	54	0%	30	60%	52	50%	benign(0)	tolerated(0.6)	neutral(0.004)	NULL
MUC4	4585	genome.wustl.edu	37	3	195514359	195514359	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018406.5	-1	reviewed	p.T1364	0.000	45	0%	99	15.2%	1	0%	-	-	-	NULL
MUC4	4585	genome.wustl.edu	37	3	195515030	195515030	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018406.5	-1	reviewed	p.D1141N	0.000	238	0.4%	353	9.3%	1	0%	possibly_damaging(0.748)	-	-	NULL
ZNF141	7700	genome.wustl.edu	37	4	366624	366624	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000240499	+1	known	p.F133C	0.018	381	0%	399	28.3%	2	0%	benign(0.015)	deleterious(0.05)	neutral(0.346)	NULL
ZNF141	7700	genome.wustl.edu	37	4	366629	366629	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000240499	+1	known	p.E135*	0.000	372	0%	388	23.7%	2	0%	-	-	-	NULL
HTT	3064	genome.wustl.edu	37	4	3127284	3127284	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002111.6	+1	reviewed	p.L444F	1.000	196	0%	221	20.4%	3	33.3%	benign(0.103)	tolerated(0.1)	neutral(0.294)	superfamily_ARM repeat
CYTL1	54360	genome.wustl.edu	37	4	5016914	5016914	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000509419	-1	known	p.S81F	0.004	327	0%	331	18.1%	2	0%	-	-	-	NULL
WFS1	7466	genome.wustl.edu	37	4	6302537	6302537	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006005.3	+1	reviewed	p.D339N	1.000	615	0%	666	25.2%	58	43.1%	probably_damaging(0.954)	deleterious(0.03)	deleterious(0.762)	NULL
MAN2B2	23324	genome.wustl.edu	37	4	6619139	6619139	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015274.1	+1	validated	p.R912C	0.887	65	0%	71	39.4%	48	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Galactose mutarotase-like,HMMPfam_Glyco_hydro_38C
HS3ST1	9957	genome.wustl.edu	37	4	11401052	11401052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005114.2	-1	reviewed	p.R193H	1.000	53	0%	50	40%	19	47.3%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
NCAPG	64151	genome.wustl.edu	37	4	17825383	17825383	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022346.3	+1	validated	p.R458I	0.994	267	0%	210	27.1%	0	-	benign(0.355)	deleterious(0.02)	deleterious(0.495)	superfamily_ARM-type_fold
SLIT2	9353	genome.wustl.edu	37	4	20619271	20619271	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004787.1	+1	provisional	p.R1449Q	0.975	110	0%	126	24.6%	4	50%	benign(0.002)	tolerated(0.67)	neutral(0.003)	superfamily_EGF/Laminin
GPR125	166647	genome.wustl.edu	37	4	22463422	22463422	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145290.2	-1	validated	p.R113	1.000	161	0%	179	30.7%	0	-	-	-	-	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
SEL1L3	23231	genome.wustl.edu	37	4	25783981	25783981	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015187.3	-1	validated	p.Y780	0.991	446	0%	508	23%	59	40.6%	-	-	-	HMMPfam_Sel1,HMMSmart_SM00671,superfamily_HCP-like
PCDH7	5099	genome.wustl.edu	37	4	30725840	30725840	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032457.3	+1	reviewed	p.K885N	1.000	240	0%	267	22.1%	2	50%	benign(0.02)	tolerated(0.72)	neutral(0.003)	HMMPfam_Protocadherin
DTHD1	401124	genome.wustl.edu	37	4	36296613	36296613	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001136536.3	+1	validated	p.R242I	0.056	330	0%	364	25.5%	0	-	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	NULL
KIAA1239	57495	genome.wustl.edu	37	4	37446022	37446022	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001144990.1	+1	validated	p.A804	0.993	103	0%	103	24.3%	0	-	-	-	-	NULL
PGM2	55276	genome.wustl.edu	37	4	37850190	37850190	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018290.3	+1	validated	p.A444T	1.000	308	0%	374	20.6%	10	0%	possibly_damaging(0.586)	deleterious(0.05)	deleterious(0.547)	superfamily_A-D-PHexomutase_a/b/a-I/II/III
TLR10	81793	genome.wustl.edu	37	4	38775668	38775668	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001017388.1	-1	reviewed	p.K515T	0.000	111	0%	137	22.6%	2	0%	possibly_damaging(0.946)	deleterious(0.02)	deleterious(0.773)	superfamily_SSF52058
TLR6	10333	genome.wustl.edu	37	4	38830555	38830555	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006068.3	-1	validated	p.N180K	0.000	133	0%	90	41.1%	0	-	possibly_damaging(0.936)	tolerated(0.07)	deleterious(0.701)	superfamily_SSF52058
WDR19	57728	genome.wustl.edu	37	4	39188217	39188217	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025132.3	+1	reviewed	p.L53V	1.000	134	0%	174	36.8%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMSmart_SM00320,superfamily_WD40 repeat-like
N4BP2	55728	genome.wustl.edu	37	4	40127829	40127829	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018177.3	+1	reviewed	p.L1469P	0.966	229	0%	231	22.5%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
GRXCR1	389207	genome.wustl.edu	37	4	43032469	43032469	+	Missense_Mutation	SNP	G	G	A	rs146696590	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080476.1	+1	provisional	p.R262Q	1.000	213	0%	225	28.4%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	superfamily_HSP_DnaJ_cys-rich
GABRA4	2557	genome.wustl.edu	37	4	46976326	46976326	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000809.2	-1	reviewed	p.P215L	1.000	237	0%	271	26.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
ATP10D	57205	genome.wustl.edu	37	4	47548710	47548710	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020453.3	+1	validated	p.S489Y	0.574	240	0%	212	30.2%	1	0%	benign(0.004)	tolerated(0.12)	neutral(0.261)	superfamily_HAD-like
TXK	7294	genome.wustl.edu	37	4	48096187	48096187	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003328.2	-1	validated	p.K206Q	0.096	313	0%	342	24.6%	1	100%	benign(0.109)	tolerated(0.23)	neutral(0.050)	HMMPfam_SH2,HMMSmart_SH2,superfamily_SSF55550
STAP1	26228	genome.wustl.edu	37	4	68449348	68449348	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012108.2	+1	reviewed	p.S196Y	0.984	194	0%	241	21.6%	1	0%	probably_damaging(0.982)	tolerated(0.05)	deleterious(0.772)	HMMSmart_SM00252,superfamily_SH2 domain
TMPRSS11A	339967	genome.wustl.edu	37	4	68810245	68810245	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182606.3	-1	validated	p.E82K	0.085	576	0.2%	619	20.7%	0	-	benign(0.008)	tolerated(0.33)	neutral(0.024)	HMMPfam_SEA,superfamily_SEA domain
TMPRSS11F	389208	genome.wustl.edu	37	4	68956245	68956245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207407.2	-1	validated	p.R93I	1.000	284	0%	298	25.5%	0	-	possibly_damaging(0.805)	tolerated(0.11)	deleterious(0.575)	HMMPfam_SEA,HMMSmart_SEA,superfamily_SSF82671
UGT2B10	7365	genome.wustl.edu	37	4	69693259	69693259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001075.4	+1	validated	p.D434Y	0.748	523	0%	556	17.3%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
UGT2A1	10941	genome.wustl.edu	37	4	70513122	70513122	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006798.2	-1	validated	p.E81*	0.979	175	0%	219	26%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_UDP-Glycosyltransferase/glycogen phosphorylase
SULT1E1	6783	genome.wustl.edu	37	4	70707715	70707715	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000506796	-1	known	p.S127Y	0.980	348	0.3%	354	23.4%	0	-	-	-	-	NULL
STATH	6779	genome.wustl.edu	37	4	70865523	70865523	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003154.2	+1	validated	p.F33	0.000	709	0.1%	777	26.5%	3	66.6%	-	-	-	HMMPfam_Statherin
ENAM	10117	genome.wustl.edu	37	4	71510105	71510105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031889.2	+1	reviewed	p.N988H	0.913	169	0%	245	16.3%	0	-	possibly_damaging(0.508)	deleterious(0)	deleterious(0.615)	NULL
UTP3	57050	genome.wustl.edu	37	4	71554872	71554872	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020368.2	+1	validated	p.E160*	1.000	51	0%	51	13.7%	13	15.3%	-	-	-	NULL
AFM	173	genome.wustl.edu	37	4	74351743	74351743	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001133.2	+1	reviewed	p.E145D	0.996	270	0%	269	29.4%	0	-	probably_damaging(0.996)	tolerated(0.52)	deleterious(0.470)	superfamily_Serum albumin-like,HMMPfam_Serum_albumin,HMMSmart_SM00103
CXCL1	2919	genome.wustl.edu	37	4	74735437	74735437	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001511.2	+1	validated	p.G51E	0.158	175	0%	185	30.3%	13	7.6%	probably_damaging(0.999)	tolerated(0.2)	deleterious(0.539)	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8,PatternScan_SMALL_CYTOKINES_CXC
PPEF2	5470	genome.wustl.edu	37	4	76804329	76804329	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006239.2	-1	reviewed	p.N258T	0.155	453	0%	455	20.4%	0	-	benign(0)	tolerated(0.7)	neutral(0.002)	HMMPfam_Metallophos,HMMSmart_SM00156,superfamily_Metallo-dependent phosphatases
CCDC158	339965	genome.wustl.edu	37	4	77255228	77255228	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001042784.1	-1	validated	p.P919	0.091	362	0%	364	20.3%	0	-	-	-	-	NULL
ENOPH1	58478	genome.wustl.edu	37	4	83375878	83375878	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021204.3	+1	validated	p.F131L	1.000	592	0%	654	19.3%	26	53.8%	benign(0)	tolerated(0.14)	neutral(0.249)	HMMPfam_Hydrolase,superfamily_HAD-like
COPS4	51138	genome.wustl.edu	37	4	83987668	83987668	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016129.2	+1	reviewed	p.E322K	1.000	144	0%	143	22.4%	16	31.2%	benign(0.268)	tolerated(0.08)	neutral(0.329)	"HMMPfam_PCI,HMMSmart_SM00088,superfamily_""Winged helix"" DNA-binding domain"
NUDT9	53343	genome.wustl.edu	37	4	88379123	88379123	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024047.3	+1	validated	p.R335*	0.991	120	0%	168	26.2%	72	30.5%	-	-	-	superfamily_Nudix
IBSP	3381	genome.wustl.edu	37	4	88732594	88732594	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004967.3	+1	reviewed	p.N162	0.851	251	0.8%	463	27.9%	0	-	-	-	-	HMMPfam_BSP_II
GRID2	2895	genome.wustl.edu	37	4	93225881	93225881	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001510.2	+1	validated	p.S25L	1.000	420	0%	421	27.1%	0	-	benign(0.061)	deleterious(0.04)	neutral(0.353)	superfamily_SSF53822
SMARCAD1	56916	genome.wustl.edu	37	4	95173975	95173975	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001128429.1	+1	validated	p.V366	0.299	208	0%	238	29.8%	6	0%	-	-	-	superfamily_P-loop containing nucleoside triphosphate hydrolases
SMARCAD1	56916	genome.wustl.edu	37	4	95200148	95200148	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001128429.1	+1	validated	p.R791C	1.000	382	0%	473	23.5%	14	21.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PDLIM5	10611	genome.wustl.edu	37	4	95575749	95575749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006457.3	+1	reviewed	p.F474L	1.000	379	0.3%	369	26.3%	23	34.7%	benign(0.019)	tolerated(0.21)	neutral(0.045)	HMMPfam_LIM,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
METAP1	23173	genome.wustl.edu	37	4	99960603	99960603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015143.2	+1	validated	p.R140Q	1.000	390	0%	469	20.7%	11	27.2%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Peptidase_M24,superfamily_Creatinase/aminopeptidase
ADH6	130	genome.wustl.edu	37	4	100134871	100134871	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001102470.1	-1	reviewed	p.K52E	0.000	186	0%	220	35%	0	-	possibly_damaging(0.623)	deleterious(0.01)	deleterious(0.623)	superfamily_GroES_like,HMMPfam_ADH_N
ADH1C	126	genome.wustl.edu	37	4	100264036	100264036	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000669.3	-1	reviewed	p.K248N	0.058	772	0%	832	27.2%	3	0%	benign(0.001)	tolerated(0.15)	neutral(0.241)	HMMPfam_ADH_zinc_N,superfamily_NAD(P)-binding Rossmann-fold domains
SLC9B2	133308	genome.wustl.edu	37	4	103950001	103950001	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178833.4	-1	validated	p.R432Q	0.987	157	0%	208	21.2%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Na_H_Exchanger
CENPE	1062	genome.wustl.edu	37	4	104116372	104116372	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001813.2	-1	validated	p.L126I	1.000	241	0%	205	33.2%	0	-	probably_damaging(0.995)	deleterious(0.04)	deleterious(0.806)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
CYP2U1	113612	genome.wustl.edu	37	4	108868686	108868686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_183075.2	+1	reviewed	p.E427D	0.881	107	0%	142	17.6%	3	33.3%	possibly_damaging(0.932)	deleterious(0.04)	deleterious(0.728)	HMMPfam_p450,superfamily_Cytochrome P450
COL25A1	84570	genome.wustl.edu	37	4	110222903	110222903	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198721.1	-1	validated	p.E91D	1.000	265	0%	239	23.8%	0	-	unknown(0)	tolerated(0.09)	-	NULL
EGF	1950	genome.wustl.edu	37	4	110882147	110882147	+	Splice_Site	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001963.4	+1	reviewed	e7+2	1.000	541	0%	556	27.9%	1	100%	-	-	-	-
ENPEP	2028	genome.wustl.edu	37	4	111397763	111397763	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001977.3	+1	validated	p.A65T	0.000	143	0%	142	20.4%	2	0%	benign(0)	tolerated(0.56)	neutral(0.006)	NULL
PITX2	5308	genome.wustl.edu	37	4	111539584	111539584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000394595	-1	known	p.L149I	1.000	175	1.1%	280	22.9%	1	100%	unknown(0)	-	-	NULL
ALPK1	80216	genome.wustl.edu	37	4	113352097	113352097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001102406.1	+1	validated	p.S465L	0.820	144	0%	191	19.9%	6	33.3%	benign(0.277)	deleterious(0)	deleterious(0.474)	NULL
C4orf21	55345	genome.wustl.edu	37	4	113460713	113460713	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000505019	-1	known	p.S2102Y	0.091	424	0%	424	26.4%	0	-	unknown(0)	deleterious(0)	-	NULL
PDE5A	8654	genome.wustl.edu	37	4	120517710	120517710	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001083.3	-1	reviewed	p.L267I	1.000	507	0%	548	30.8%	4	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_GAF,HMMSmart_SM00065,superfamily_GAF domain-like
KIAA1109	84162	genome.wustl.edu	37	4	123275097	123275097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015312.3	+1	reviewed	p.R4744C	1.000	233	0%	237	23.2%	15	13.3%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_FSA_C
ADAD1	132612	genome.wustl.edu	37	4	123342498	123342498	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_139243.3	+1	validated	p.E524*	1.000	289	0%	260	24.2%	0	-	-	-	-	HMMPfam_A_deamin,HMMSmart_SM00552
IL21	59067	genome.wustl.edu	37	4	123542070	123542070	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021803.2	-1	validated	p.D33Y	0.951	350	0%	414	22.7%	1	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SPATA5	166378	genome.wustl.edu	37	4	124011824	124011824	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145207.2	+1	validated	p.I768M	0.869	268	0%	284	26.4%	0	-	benign(0.169)	deleterious(0)	neutral(0.460)	HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
ANKRD50	57182	genome.wustl.edu	37	4	125593513	125593513	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020337.2	-1	validated	p.E307*	1.000	197	0%	189	30.7%	0	-	-	-	-	NULL
FAT4	79633	genome.wustl.edu	37	4	126240606	126240606	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024582.4	+1	validated	p.R1014*	0.976	147	0%	122	23.8%	0	-	-	-	-	HMMPfam_Cadherin,superfamily_Cadherin-like
FAT4	79633	genome.wustl.edu	37	4	126369858	126369858	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024582.4	+1	validated	p.D2563N	0.999	156	0%	158	19.6%	0	-	benign(0.177)	tolerated(0.69)	neutral(0.019)	HMMSmart_SM00112
FAT4	79633	genome.wustl.edu	37	4	126371593	126371593	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024582.4	+1	validated	p.S3141Y	0.472	120	0%	118	16.1%	0	-	benign(0.241)	deleterious(0.03)	neutral(0.389)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
ELF2	1998	genome.wustl.edu	37	4	140058853	140058853	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_201999.1	-1	validated	p.M1I	1.000	331	0%	391	25.1%	2	100%	benign(0.195)	deleterious(0)	neutral(0.463)	NULL
MAML3	55534	genome.wustl.edu	37	4	140812013	140812013	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018717.4	-1	validated	p.R193*	1.000	197	0%	229	24.9%	2	100%	-	-	-	NULL
TBC1D9	23158	genome.wustl.edu	37	4	141600931	141600931	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015130.2	-1	validated	p.E143*	1.000	238	0.4%	296	28.4%	4	0%	-	-	-	NULL
SMARCA5	8467	genome.wustl.edu	37	4	144445600	144445600	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003601.2	+1	reviewed	p.R167Q	1.000	230	0%	262	22.5%	12	25%	benign(0.296)	tolerated(0.37)	neutral(0.111)	superfamily_SSF52540
FREM3	166752	genome.wustl.edu	37	4	144507037	144507037	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000329798	-1	known	p.I2046	0.119	253	0%	254	26.8%	0	-	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
OTUD4	54726	genome.wustl.edu	37	4	146058955	146058955	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001102653.1	-1	reviewed	p.K926T	0.990	266	0%	228	29.8%	9	33.3%	possibly_damaging(0.68)	deleterious(0.01)	deleterious(0.648)	NULL
FBXW7	55294	genome.wustl.edu	37	4	153249384	153249384	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033632.2	-1	reviewed	p.R465H	1.000	322	0%	362	24%	6	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
FGB	2244	genome.wustl.edu	37	4	155488924	155488924	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005141.4	+1	reviewed	p.R224C	0.993	137	0%	163	28.8%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Fib_beta
FGA	2243	genome.wustl.edu	37	4	155505308	155505308	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000508.3	-1	reviewed	p.R857C	0.996	106	0%	93	25.8%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Fibrinogen_C,HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
FGA	2243	genome.wustl.edu	37	4	155507480	155507480	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000508.3	-1	reviewed	p.R367	0.000	198	0%	113	18.6%	0	-	-	-	-	HMMPfam_Fib_alpha
FGG	2266	genome.wustl.edu	37	4	155530921	155530921	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000407946	-1	known	p.S184Y	0.790	180	0%	171	25.1%	0	-	benign(0.095)	tolerated(0.72)	neutral(0.009)	HMMSmart_SM00186,superfamily_Fibrinogen C-terminal domain-like
GUCY1A3	2982	genome.wustl.edu	37	4	156634504	156634504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000856.4	+1	validated	p.K447N	1.000	184	0%	203	22.7%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_CYCc,HMMPfam_HNOBA
FSTL5	56884	genome.wustl.edu	37	4	162402188	162402188	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020116.3	-1	validated	p.S531F	1.000	160	0%	139	25.9%	0	-	possibly_damaging(0.873)	deleterious(0.03)	deleterious(0.704)	superfamily_Amine_DH_B_like
NPY1R	4886	genome.wustl.edu	37	4	164246831	164246831	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000909.4	-1	validated	p.R260I	1.000	265	0%	337	25.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
TKTL2	84076	genome.wustl.edu	37	4	164394337	164394337	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032136.4	-1	validated	p.D184N	0.980	102	0%	76	27.6%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Transketolase_N,superfamily_SSF52518
DDX60	55601	genome.wustl.edu	37	4	169167739	169167739	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017631.5	-1	validated	p.D1332N	0.978	148	0%	151	17.9%	21	38%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_P-loop containing nucleoside triphosphate hydrolases
CLCN3	1182	genome.wustl.edu	37	4	170610362	170610362	+	Nonsense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173872.2	+1	validated	p.L196*	0.993	238	0%	320	27.2%	5	20%	-	-	-	superfamily_Cl-channel_core
CLCN3	1182	genome.wustl.edu	37	4	170628207	170628207	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173872.2	+1	validated	p.E647*	1.000	325	0%	331	26.9%	6	16.6%	-	-	-	NULL
GALNT7	51809	genome.wustl.edu	37	4	174213410	174213410	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017423.2	+1	reviewed	p.D247N	1.000	244	0%	248	25.8%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
GPM6A	2823	genome.wustl.edu	37	4	176733401	176733401	+	Splice_Site	SNP	C	C	A	rs75902123	byFrequency	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005277.3	-1	validated	e1-1	1.000	350	0%	322	29.8%	0	-	-	-	-	-
WDR17	116966	genome.wustl.edu	37	4	177067183	177067183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_170710.4	+1	reviewed	p.R547C	1.000	281	0%	336	20.5%	0	-	probably_damaging(1)	deleterious(0.05)	deleterious(0.845)	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
WDR17	116966	genome.wustl.edu	37	4	177069291	177069291	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_170710.4	+1	reviewed	p.R592*	1.000	327	0%	383	26.9%	0	-	-	-	-	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40
WWC2	80014	genome.wustl.edu	37	4	184205512	184205512	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024949.5	+1	validated	p.S1006Y	1.000	136	0%	172	27.3%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STOX2	56977	genome.wustl.edu	37	4	184930789	184930789	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020225.1	+1	provisional	p.F266	0.831	49	0%	45	22.2%	0	-	-	-	-	NULL
ACSL1	2180	genome.wustl.edu	37	4	185678386	185678386	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001995.2	-1	reviewed	p.S664A	0.949	129	0%	114	26.3%	21	38%	benign(0.045)	deleterious(0.01)	neutral(0.408)	superfamily_Acetyl-CoA synthetase-like
CCDC110	256309	genome.wustl.edu	37	4	186379838	186379838	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152775.3	-1	validated	p.E635*	0.059	273	0%	282	27%	2	0%	-	-	-	NULL
TLR3	7098	genome.wustl.edu	37	4	187005911	187005911	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003265.2	+1	reviewed	p.R867*	0.944	160	0%	188	30.3%	33	45.4%	-	-	-	HMMPfam_TIR,HMMSmart_TIR,superfamily_TIR
TRIML1	339976	genome.wustl.edu	37	4	189068180	189068180	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178556.3	+1	provisional	p.E354G	0.998	119	0%	149	24.2%	0	-	probably_damaging(0.999)	tolerated(0.42)	deleterious(0.504)	HMMPfam_SPRY,HMMSmart_SPRY
SLC9A3	6550	genome.wustl.edu	37	5	476387	476387	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004174.2	-1	validated	p.S666L	0.998	233	0%	173	16.8%	3	0%	probably_damaging(0.97)	deleterious(0.05)	deleterious(0.758)	NULL
SLC6A19	340024	genome.wustl.edu	37	5	1201864	1201864	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001003841.2	+1	reviewed	p.P33	0.998	51	0%	58	34.5%	0	-	-	-	-	HMMPfam_SNF
IRX1	79192	genome.wustl.edu	37	5	3600751	3600751	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024337.3	+1	validated	p.S447	0.991	48	0%	52	26.9%	0	-	-	-	-	NULL
ADAMTS16	170690	genome.wustl.edu	37	5	5239993	5239993	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_139056.2	+1	reviewed	p.E826D	1.000	129	0%	87	39.1%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_ADAM_spacer1
KIAA0947	23379	genome.wustl.edu	37	5	5463178	5463178	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015325.1	+1	validated	p.S1244L	0.000	88	0%	91	11%	1	0%	benign(0.039)	deleterious(0.04)	neutral(0.351)	NULL
NSUN2	54888	genome.wustl.edu	37	5	6600283	6600283	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017755.4	-1	validated	p.R687Q	0.998	245	0%	244	23%	33	24.2%	possibly_damaging(0.941)	deleterious(0)	deleterious(0.831)	NULL
ADCY2	108	genome.wustl.edu	37	5	7717330	7717330	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020546.2	+1	reviewed	p.I561	0.999	335	0%	380	22.9%	0	-	-	-	-	HMMPfam_DUF1053
SEMA5A	9037	genome.wustl.edu	37	5	9054352	9054352	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003966.2	-1	reviewed	p.C846R	1.000	82	0%	112	33.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1
MARCH6	10299	genome.wustl.edu	37	5	10405703	10405703	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005885.2	+1	provisional	p.N456Y	1.000	366	0%	388	27.6%	25	60%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CTNND2	1501	genome.wustl.edu	37	5	11364815	11364815	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001332.2	-1	validated	p.T455	1.000	109	0%	116	32.8%	10	40%	-	-	-	NULL
DNAH5	1767	genome.wustl.edu	37	5	13708294	13708294	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001369.2	-1	reviewed	p.E4426K	1.000	266	0%	301	22.9%	0	-	benign(0.049)	tolerated(0.18)	neutral(0.059)	HMMPfam_Dynein_heavy
DNAH5	1767	genome.wustl.edu	37	5	13786422	13786422	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001369.2	-1	reviewed	p.I2896L	0.992	271	0%	295	28.1%	0	-	benign(0.004)	tolerated(0.28)	neutral(0.032)	superfamily_SSF52540
DNAH5	1767	genome.wustl.edu	37	5	13841194	13841194	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001369.2	-1	reviewed	p.E1844*	1.000	496	0%	448	13.2%	0	-	-	-	-	NULL
MARCH11	441061	genome.wustl.edu	37	5	16067799	16067799	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001102562.1	-1	provisional	p.I330	0.991	233	0%	245	26.1%	0	-	-	-	-	NULL
PRDM9	56979	genome.wustl.edu	37	5	23522833	23522833	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020227.2	+1	provisional	p.S241G	0.997	198	0%	141	20.6%	0	-	benign(0.053)	deleterious(0)	neutral(0.448)	superfamily_SSF82199
PRDM9	56979	genome.wustl.edu	37	5	23527040	23527040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020227.2	+1	provisional	p.R615W	0.991	159	0.6%	124	19.4%	0	-	benign(0)	deleterious(0)	neutral(0.445)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC729862	729862	genome.wustl.edu	37	5	28927117	28927117	+	RNA	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XR_040872.2	+1	model	NULL	0.490	169	0%	190	21.1%	0	-	-	-	-	-
CDH6	1004	genome.wustl.edu	37	5	31316323	31316323	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004932.2	+1	reviewed	p.K467E	0.994	122	0.8%	149	16.8%	0	-	possibly_damaging(0.932)	tolerated(0.96)	neutral(0.379)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
BRIX1	55299	genome.wustl.edu	37	5	34923142	34923142	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018321.3	+1	validated	p.E183K	1.000	469	0%	493	19.3%	18	22.2%	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Brix
UGT3A2	167127	genome.wustl.edu	37	5	36052021	36052021	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_174914.3	-1	validated	p.E88*	0.001	156	0%	167	28.1%	0	-	-	-	-	HMMPfam_UDPGT,superfamily_SSF53756
RANBP3L	202151	genome.wustl.edu	37	5	36260953	36260953	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145000.3	-1	validated	p.E200*	1.000	118	0%	117	17.9%	0	-	-	-	-	NULL
FYB	2533	genome.wustl.edu	37	5	39141211	39141211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001465.3	-1	validated	p.V442A	0.034	140	0%	239	23.4%	3	0%	benign(0)	deleterious(0)	neutral(0.445)	NULL
C9	735	genome.wustl.edu	37	5	39341366	39341366	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001737.3	-1	reviewed	p.N120H	0.970	140	0%	173	26.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich
PRKAA1	5562	genome.wustl.edu	37	5	40777567	40777567	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_206907.3	-1	reviewed	p.R83	1.000	352	0.3%	331	23.3%	9	22.2%	-	-	-	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase
C7	730	genome.wustl.edu	37	5	40950023	40950023	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000587.2	+1	reviewed	p.E334*	0.000	306	0%	326	22.7%	2	0%	-	-	-	HMMPfam_MACPF,HMMSmart_MACPF
OXCT1	5019	genome.wustl.edu	37	5	41801159	41801159	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000436.3	-1	reviewed	p.R355Q	0.006	291	0.3%	333	24.6%	27	44.4%	benign(0.232)	tolerated(0.45)	neutral(0.035)	HMMPfam_CoA_trans,superfamily_SSF100950
DHX29	54505	genome.wustl.edu	37	5	54592117	54592117	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019030.2	-1	validated	p.T146A	1.000	150	0%	203	24.6%	3	0%	possibly_damaging(0.664)	tolerated(0.06)	deleterious(0.557)	NULL
MAP3K1	4214	genome.wustl.edu	37	5	56152446	56152446	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005921.1	+1	validated	p.E168*	1.000	211	0%	202	28.7%	1	0%	-	-	-	NULL
ACTBL2	345651	genome.wustl.edu	37	5	56778160	56778160	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001017992.2	-1	validated	p.F125	0.707	167	0%	188	28.7%	0	-	-	-	-	HMMPfam_Actin,HMMSmart_SM00268,superfamily_Actin-like ATPase domain
HTR1A	3350	genome.wustl.edu	37	5	63256319	63256319	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000524.2	-1	validated	p.A410T	1.000	119	0%	140	27.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Family A G protein-coupled receptor-like
CD180	4064	genome.wustl.edu	37	5	66479055	66479055	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005582.2	-1	validated	p.S539Y	0.425	117	0%	93	21.5%	3	0%	benign(0.135)	tolerated(0.5)	neutral(0.021)	HMMSmart_SM00369,superfamily_L domain-like
PIK3R1	5295	genome.wustl.edu	37	5	67588927	67588928	+	Splice_Site	INS	-	-	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181523.1	+1	reviewed	e8-1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
PIK3R1	5295	genome.wustl.edu	37	5	67592108	67592108	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181523.1	+1	reviewed	p.R642*	0.990	268	0%	352	27.8%	63	26.9%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
BDP1	55814	genome.wustl.edu	37	5	70818130	70818130	+	Missense_Mutation	SNP	C	C	T	rs34529158	byCluster;by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018429.2	+1	reviewed	p.P1669L	0.000	68	1.5%	151	29.1%	3	100%	benign(0)	tolerated(0.11)	neutral(0.272)	NULL
BDP1	55814	genome.wustl.edu	37	5	70855917	70855917	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018429.2	+1	reviewed	p.R2450I	0.000	219	0%	261	21.1%	3	0%	possibly_damaging(0.852)	tolerated(0.28)	neutral(0.359)	NULL
MAP1B	4131	genome.wustl.edu	37	5	71495921	71495921	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005909.3	+1	validated	p.K2247Q	1.000	71	0%	81	25.9%	5	0%	unknown(0)	deleterious(0.04)	-	NULL
PTCD2	79810	genome.wustl.edu	37	5	71631709	71631709	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024754.3	+1	validated	p.K212N	1.000	318	0%	275	24%	1	0%	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
UTP15	84135	genome.wustl.edu	37	5	72875811	72875811	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000509005	+1	known	p.P510L	1.000	250	0%	326	20.2%	5	40%	-	-	-	HMMPfam_U3_snoRNA_C
FAM169A	26049	genome.wustl.edu	37	5	74130379	74130379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015566.1	-1	validated	p.R121Q	1.000	234	0%	269	16%	0	-	probably_damaging(1)	tolerated(0.24)	deleterious(0.537)	NULL
ANKRD31	256006	genome.wustl.edu	37	5	74442059	74442059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000274361	-1	known	p.K1059N	0.000	233	0%	209	28.2%	0	-	possibly_damaging(0.495)	deleterious(0)	deleterious(0.610)	superfamily_ANK
POLK	51426	genome.wustl.edu	37	5	74892605	74892605	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016218.2	+1	validated	p.S696Y	0.004	94	0%	52	26.9%	9	22.2%	unknown(0)	deleterious(0)	-	NULL
SV2C	22987	genome.wustl.edu	37	5	75581081	75581081	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000510301	+1	known	p.P67S	0.967	477	0%	456	21.7%	0	-	-	-	-	HMMPfam_Sugar_tr,superfamily_MFS general substrate transporter
F2RL1	2150	genome.wustl.edu	37	5	76129272	76129272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005242.4	+1	validated	p.K280N	1.000	192	0.5%	180	28.3%	45	42.2%	possibly_damaging(0.952)	tolerated(0.15)	deleterious(0.637)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
S100Z	170591	genome.wustl.edu	37	5	76173562	76173562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_130772.3	+1	validated	p.E69K	1.000	438	0%	517	31.5%	0	-	benign(0.02)	tolerated(0.43)	neutral(0.014)	PatternScan_S100_CABP,HMMSmart_SM00054,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_EF-hand
AGGF1	55109	genome.wustl.edu	37	5	76351386	76351386	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018046.3	+1	validated	p.E561*	1.000	257	0%	301	18.6%	7	14.2%	-	-	-	NULL
PDE8B	8622	genome.wustl.edu	37	5	76703223	76703223	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003719.2	+1	validated	p.R436C	0.999	104	1%	111	33.3%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
JMY	133746	genome.wustl.edu	37	5	78573832	78573832	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152405.4	+1	validated	p.E378K	1.000	175	0%	226	28.8%	2	50%	probably_damaging(0.978)	tolerated(0.27)	neutral(0.454)	NULL
PAPD4	167153	genome.wustl.edu	37	5	78936767	78936767	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001114393.1	+1	validated	p.E187*	1.000	174	0%	222	27.5%	7	14.2%	-	-	-	superfamily_Nucleotidyltransferase
CMYA5	202333	genome.wustl.edu	37	5	79024982	79024982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153610.3	+1	validated	p.R132W	0.987	375	0%	475	26.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79031216	79031216	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153610.3	+1	validated	p.V2210I	0.406	43	0%	46	32.6%	0	-	possibly_damaging(0.666)	deleterious(0)	deleterious(0.680)	NULL
CMYA5	202333	genome.wustl.edu	37	5	79033484	79033484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153610.3	+1	validated	p.D2966N	1.000	45	0%	48	25%	0	-	probably_damaging(0.988)	deleterious(0)	deleterious(0.882)	NULL
ANKRD34B	340120	genome.wustl.edu	37	5	79855264	79855264	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004441.2	-1	validated	p.K192R	0.695	407	0%	508	25%	0	-	probably_damaging(0.982)	tolerated(0.54)	neutral(0.434)	NULL
RASGRF2	5924	genome.wustl.edu	37	5	80369246	80369246	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006909.1	+1	validated	p.D288N	0.998	213	0.9%	189	32.3%	1	0%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
VCAN	1462	genome.wustl.edu	37	5	82816085	82816085	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004385.4	+1	reviewed	p.E654*	0.073	267	0%	211	21.8%	0	-	-	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82833155	82833155	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004385.4	+1	reviewed	p.D1445N	0.625	89	0%	87	17.2%	3	0%	possibly_damaging(0.87)	-	-	NULL
VCAN	1462	genome.wustl.edu	37	5	82833726	82833726	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004385.4	+1	reviewed	p.S1635L	0.549	97	0%	91	35.2%	0	-	probably_damaging(0.989)	-	-	NULL
RASA1	5921	genome.wustl.edu	37	5	86672809	86672809	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002890.1	+1	reviewed	p.E766*	1.000	283	0%	413	25.4%	6	0%	-	-	-	HMMSmart_SM00323,superfamily_GTPase activation domain GAP
GPR98	84059	genome.wustl.edu	37	5	89985786	89985786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032119.3	+1	reviewed	p.S2200Y	1.000	247	0%	320	22.2%	0	-	possibly_damaging(0.558)	tolerated(1)	neutral(0.191)	HMMPfam_Calx-beta,HMMSmart_SM00237
GPR98	84059	genome.wustl.edu	37	5	90149256	90149256	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032119.3	+1	reviewed	p.A5787V	0.026	236	0%	256	29.3%	1	100%	benign(0.033)	tolerated(0.14)	neutral(0.251)	NULL
RHOBTB3	22836	genome.wustl.edu	37	5	95091321	95091321	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014899.3	+1	validated	p.T302A	0.100	286	0%	246	26.8%	6	33.3%	benign(0)	tolerated(0.42)	neutral(0.014)	HMMSmart_BTB
CAST	831	genome.wustl.edu	37	5	96093331	96093331	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001750.5	+1	reviewed	p.F602L	0.807	429	0%	410	28.3%	84	44%	possibly_damaging(0.882)	tolerated(0.07)	deleterious(0.663)	HMMPfam_Calpain_inhib
ERAP1	51752	genome.wustl.edu	37	5	96112154	96112154	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016442.3	-1	validated	p.K924N	1.000	535	0%	522	26.2%	74	44.5%	possibly_damaging(0.748)	tolerated(0.35)	neutral(0.295)	NULL
GIN1	54826	genome.wustl.edu	37	5	102442572	102442572	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017676.2	-1	validated	p.R61C	1.000	220	0%	202	28.2%	2	100%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
MAN2A1	4124	genome.wustl.edu	37	5	109155562	109155562	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002372.2	+1	reviewed	p.R768W	0.000	88	0%	111	23.4%	4	50%	benign(0)	deleterious(0.03)	neutral(0.364)	superfamily_Gal_mut_like,HMMPfam_Glyco_hydro_38C
APC	324	genome.wustl.edu	37	5	112177354	112177354	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000038.4	+1	reviewed	p.F2021L	1.000	169	0.6%	199	26.1%	1	0%	probably_damaging(0.987)	deleterious(0.01)	deleterious(0.842)	HMMPfam_APC_crr
DCP2	167227	genome.wustl.edu	37	5	112343646	112343646	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000513585	+1	known	p.E300*	0.969	236	0%	298	21.5%	1	0%	benign(0.013)	tolerated(0.06)	neutral(0.323)	NULL
MCC	4163	genome.wustl.edu	37	5	112384781	112384781	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000514701	-1	known	p.P568	0.000	66	0%	48	20.8%	0	-	-	-	-	NULL
TRIM36	55521	genome.wustl.edu	37	5	114469587	114469587	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018700.3	-1	reviewed	p.E502*	1.000	232	0%	224	27.2%	0	-	-	-	-	superfamily_Fibronectin type III
ALDH7A1	501	genome.wustl.edu	37	5	125919662	125919662	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001182.3	-1	reviewed	p.D119N	0.998	218	0.5%	268	17.9%	26	57.6%	possibly_damaging(0.796)	tolerated(0.3)	neutral(0.328)	HMMPfam_Aldedh,superfamily_ALDH-like
FBN2	2201	genome.wustl.edu	37	5	127674677	127674677	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001999.3	-1	reviewed	p.C1140	0.867	123	0%	143	28.7%	0	-	-	-	-	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin
FBN2	2201	genome.wustl.edu	37	5	127782233	127782233	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001999.3	-1	reviewed	p.S298Y	1.000	277	0%	299	26.4%	0	-	possibly_damaging(0.449)	deleterious(0)	deleterious(0.592)	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_EGF_CA,PatternScan_EGF_CA
RAPGEF6	51735	genome.wustl.edu	37	5	130764831	130764831	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016340.5	-1	validated	p.S1515Y	1.000	216	0.5%	245	26.1%	2	0%	possibly_damaging(0.882)	deleterious(0.02)	deleterious(0.728)	NULL
FNIP1	96459	genome.wustl.edu	37	5	131008554	131008554	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133372.2	-1	validated	p.R528Q	1.000	108	0%	105	24.8%	2	50%	possibly_damaging(0.921)	tolerated(0.46)	neutral(0.383)	NULL
RAD50	10111	genome.wustl.edu	37	5	131953783	131953783	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005732.3	+1	reviewed	p.E1062D	1.000	167	0%	211	17.5%	16	56.2%	benign(0.055)	deleterious(0.04)	neutral(0.352)	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases
HSPA4	3308	genome.wustl.edu	37	5	132400724	132400724	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002154.3	+1	validated	p.S54R	1.000	665	0%	734	14.4%	25	12%	benign(0.084)	deleterious(0.01)	neutral(0.412)	HMMPfam_HSP70,superfamily_SSF53067
TXNDC15	79770	genome.wustl.edu	37	5	134232073	134232073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024715.3	+1	validated	p.R282Q	1.000	264	0%	301	24.3%	29	27.5%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
LOC153328	153328	genome.wustl.edu	37	5	135188504	135188504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145282.4	+1	validated	p.R139W	0.936	58	0%	49	24.5%	6	66.6%	possibly_damaging(0.747)	deleterious(0.03)	deleterious(0.639)	superfamily_Mitoch_carrier
TRPC7	57113	genome.wustl.edu	37	5	135587488	135587488	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000378459	-1	known	p.R415W	0.996	75	0%	89	29.2%	0	-	-	-	-	HMMPfam_Ion_trans
TRPC7	57113	genome.wustl.edu	37	5	135693029	135693029	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000513104	-1	known	p.T16M	0.988	21	0%	20	40%	0	-	benign(0.013)	deleterious(0.03)	neutral(0.365)	superfamily_ANK
BRD8	10902	genome.wustl.edu	37	5	137501618	137501618	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_139199.1	-1	reviewed	p.E393*	1.000	307	0%	330	23%	3	66.6%	-	-	-	NULL
KDM3B	51780	genome.wustl.edu	37	5	137735575	137735575	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016604.3	+1	validated	p.R1025C	1.000	207	0%	299	27.4%	17	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
REEP2	51308	genome.wustl.edu	37	5	137781207	137781207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016606.2	+1	provisional	p.R204W	0.984	100	0%	71	23.9%	1	0%	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	NULL
MATR3	9782	genome.wustl.edu	37	5	138658444	138658444	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018834.4	+1	reviewed	p.Q646*	1.000	195	0%	255	35.3%	66	0%	-	-	-	NULL
CD14	929	genome.wustl.edu	37	5	140011659	140011659	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000591.3	-1	reviewed	p.L304I	1.000	65	0%	70	25.7%	238	3.3%	probably_damaging(0.99)	tolerated(0.06)	deleterious(0.764)	HMMPfam_LRR_1,superfamily_SSF52047
PCDHA9	9752	genome.wustl.edu	37	5	140229206	140229206	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031857.1	+1	reviewed	p.D376N	0.998	221	0%	215	32.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHA12	56137	genome.wustl.edu	37	5	140255439	140255439	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018903.2	+1	reviewed	p.D128N	1.000	176	0.6%	172	16.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00112,PatternScan_CADHERIN_1,superfamily_Cadherin-like
PCDHB1	29930	genome.wustl.edu	37	5	140432245	140432245	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013340.2	+1	reviewed	p.T397K	0.434	199	0.5%	244	29.5%	0	-	benign(0.117)	deleterious(0)	neutral(0.454)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB1	29930	genome.wustl.edu	37	5	140432246	140432246	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013340.2	+1	reviewed	p.T397	0.006	198	0%	241	22.4%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHB5	26167	genome.wustl.edu	37	5	140515208	140515208	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015669.2	+1	reviewed	p.A64	0.028	79	0%	83	15.7%	0	-	-	-	-	HMMPfam_Cadherin_2,superfamily_Cadherin
PCDHB8	56128	genome.wustl.edu	37	5	140559705	140559705	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019120.2	+1	reviewed	p.S697L	0.002	58	0%	60	23.3%	0	-	possibly_damaging(0.807)	tolerated(0.33)	neutral(0.328)	NULL
PCDHB12	56124	genome.wustl.edu	37	5	140589344	140589344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018932.3	+1	reviewed	p.R289C	0.019	232	0%	219	19.6%	1	0%	benign(0.006)	deleterious(0.04)	neutral(0.349)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
PCDHGA1	56114	genome.wustl.edu	37	5	140712177	140712177	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018912.2	+1	reviewed	p.L642	0.764	47	0%	41	39%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGB1	56104	genome.wustl.edu	37	5	140730244	140730244	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018922.2	+1	reviewed	p.I139M	0.701	176	0%	171	28.7%	0	-	probably_damaging(0.973)	deleterious(0.04)	deleterious(0.764)	superfamily_Cadherin-like
PCDHGB2	56103	genome.wustl.edu	37	5	140742043	140742043	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018923.2	+1	reviewed	p.V781I	0.763	230	0.4%	216	24.1%	0	-	benign(0.018)	tolerated(0.47)	neutral(0.011)	NULL
PCDHGB6	56100	genome.wustl.edu	37	5	140788257	140788257	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018926.2	+1	reviewed	p.N163S	0.839	206	0%	168	33.3%	0	-	benign(0)	deleterious(0.02)	neutral(0.383)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
PCDHGC3	5098	genome.wustl.edu	37	5	140857161	140857161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002588.2	+1	reviewed	p.S493Y	1.000	156	0%	134	26.9%	6	16.6%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
HDAC3	8841	genome.wustl.edu	37	5	141009679	141009679	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003883.3	-1	reviewed	p.G99R	1.000	141	0%	117	29.1%	17	35.2%	possibly_damaging(0.668)	deleterious(0)	deleterious(0.681)	HMMPfam_Hist_deacetyl,superfamily_Arginase/deacetylase
GNPDA1	10007	genome.wustl.edu	37	5	141385781	141385781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005471.4	-1	validated	p.D113N	0.999	348	0%	424	15.8%	17	17.6%	benign(0.008)	tolerated(0.13)	neutral(0.253)	HMMPfam_Glucosamine_iso,superfamily_SSF100950
NR3C1	2908	genome.wustl.edu	37	5	142662264	142662264	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001024094.1	-1	reviewed	p.E685*	1.000	395	0%	454	21.8%	3	0%	-	-	-	HMMPfam_Hormone_recep,HMMSmart_HOLI,superfamily_Str_ncl_receptor
TCERG1	10915	genome.wustl.edu	37	5	145872592	145872592	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006706.3	+1	reviewed	p.F741C	1.000	203	0%	250	24.4%	6	66.6%	unknown(0)	deleterious(0)	-	HMMPfam_FF,HMMSmart_SM00441,superfamily_FF domain
PPP2R2B	5521	genome.wustl.edu	37	5	146017862	146017862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181676.2	-1	reviewed	p.R251W	1.000	215	0%	217	24.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00320,superfamily_WD40 repeat-like
PPP2R2B	5521	genome.wustl.edu	37	5	146070774	146070774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181676.2	-1	reviewed	p.E125K	1.000	381	0.5%	271	26.6%	1	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	superfamily_WD40 repeat-like,HMMPfam_PP2A_B_N
FBXO38	81545	genome.wustl.edu	37	5	147820025	147820025	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_205836.1	+1	validated	p.R1070Q	1.000	106	0%	118	23.7%	16	25%	probably_damaging(0.968)	tolerated(0.11)	deleterious(0.681)	NULL
HTR4	3360	genome.wustl.edu	37	5	147928296	147928296	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001040173.2	-1	reviewed	p.R96	0.981	197	0%	270	23%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
PDE6A	5145	genome.wustl.edu	37	5	149276035	149276035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000440.2	-1	reviewed	p.E502K	1.000	216	0%	269	19.3%	0	-	benign(0.004)	tolerated(0.48)	neutral(0.011)	superfamily_SSF109604
CSF1R	1436	genome.wustl.edu	37	5	149459853	149459853	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005211.3	-1	reviewed	p.F118	0.000	25	0%	24	29.2%	11	0%	-	-	-	HMMSmart_IG,superfamily_SSF48726
ARSI	340075	genome.wustl.edu	37	5	149677913	149677913	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001012301.2	-1	validated	p.D192N	1.000	98	0%	72	18.1%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Sulfatase,superfamily_Alkaline phosphatase-like
SYNPO	11346	genome.wustl.edu	37	5	150028140	150028140	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007286.5	+1	validated	p.P101	0.017	102	0%	150	26%	10	0%	-	-	-	NULL
ZNF300	91975	genome.wustl.edu	37	5	150275263	150275263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_052860.2	-1	reviewed	p.R513I	1.000	206	0%	218	25.7%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SPARC	6678	genome.wustl.edu	37	5	151051214	151051214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003118.2	-1	provisional	p.E84K	1.000	171	0%	216	18.1%	582	0%	probably_damaging(0.982)	tolerated(0.17)	deleterious(0.485)	PatternScan_OSTEONECTIN_1,HMMSmart_SM00274,HMMPfam_FOLN,superfamily_EGF/Laminin
HAVCR1	26762	genome.wustl.edu	37	5	156479612	156479612	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001099414.1	-1	reviewed	p.R145*	0.418	462	0%	557	28.4%	1	0%	-	-	-	NULL
CYFIP2	26999	genome.wustl.edu	37	5	156786060	156786060	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000398252	+1	known	p.R210C	0.575	371	0%	371	21%	6	16.6%	unknown(0)	tolerated(0.08)	-	NULL
ADAM19	8728	genome.wustl.edu	37	5	156945878	156945878	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033274.2	-1	reviewed	p.N207H	0.992	271	0%	325	22.2%	0	-	benign(0.002)	tolerated(0.36)	neutral(0.020)	"superfamily_Metalloproteases (""zincins"") catalytic domain"
SOX30	11063	genome.wustl.edu	37	5	157078271	157078271	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178424.1	-1	reviewed	p.R272	0.976	96	0%	85	20%	0	-	-	-	-	NULL
HMMR	3161	genome.wustl.edu	37	5	162902542	162902542	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142556.1	+1	reviewed	p.E378*	1.000	271	0%	300	26.3%	2	0%	-	-	-	NULL
ODZ2	57451	genome.wustl.edu	37	5	167645592	167645592	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001122679.1	+1	inferred	p.R1557W	1.000	114	0%	166	22.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_NHL,superfamily_Concanavalin A-like lectins/glucanases,superfamily_NHL repeat
DOCK2	1794	genome.wustl.edu	37	5	169267780	169267780	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004946.2	+1	validated	p.I908S	1.000	263	0%	270	27.4%	5	0%	possibly_damaging(0.603)	deleterious(0)	deleterious(0.653)	NULL
RPL26L1	51121	genome.wustl.edu	37	5	172396461	172396461	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016093.2	+1	reviewed	p.L119I	1.000	559	0.4%	686	24.6%	41	43.9%	benign(0.033)	tolerated(0.45)	neutral(0.013)	superfamily_Translation proteins SH3-like domain
CPEB4	80315	genome.wustl.edu	37	5	173317791	173317791	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030627.2	+1	validated	p.S352N	1.000	156	0.6%	147	21.8%	4	0%	benign(0.001)	tolerated(0.3)	neutral(0.029)	NULL
LOC100127922	100127922	genome.wustl.edu	37	5	173988810	173988810	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002342573.1	+1	model	p.K55T	1.000	34	0%	28	25%	3	0%	-	-	-	superfamily_Ubiquitin-like
FAM153A	285596	genome.wustl.edu	37	5	175536162	175536162	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000393522	+1	known	p.S329Y	0.000	707	0%	813	13.7%	0	-	-	-	-	NULL
UNC5A	90249	genome.wustl.edu	37	5	176295177	176295177	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000509580	+1	known	p.R79*	0.991	177	0%	167	24%	3	0%	-	-	-	superfamily_Immunoglobulin
ENSG00000245859	0	genome.wustl.edu	37	5	176910849	176910849	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000499364	+1	novel	NULL	0.001	62	0%	36	22.2%	0	-	-	-	-	-
FAM153B	202134	genome.wustl.edu	37	5	177174765	177174765	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000503567	-1	known	p.T11	0.004	1301	0.1%	1502	9%	0	-	-	-	-	NULL
AGXT2L2	85007	genome.wustl.edu	37	5	177657001	177657001	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153373.2	-1	validated	p.A93V	1.000	113	0%	97	16.5%	29	20.6%	probably_damaging(0.997)	deleterious(0.02)	deleterious(0.849)	HMMPfam_Aminotran_3,superfamily_PLP-dependent transferases
ZFP2	80108	genome.wustl.edu	37	5	178359015	178359015	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030613.2	+1	provisional	p.R234I	1.000	135	0%	179	25.1%	2	50%	probably_damaging(0.999)	tolerated(0.13)	deleterious(0.743)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
BTNL3	10917	genome.wustl.edu	37	5	180431433	180431433	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_197975.1	+1	validated	p.H275	0.000	584	0.2%	537	18.6%	0	-	-	-	-	NULL
TRIM7	81786	genome.wustl.edu	37	5	180625708	180625708	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_203293.1	-1	reviewed	p.M324V	0.997	199	0%	168	23.8%	0	-	benign(0)	tolerated(0.91)	-	NULL
PSMG4	389362	genome.wustl.edu	37	6	3263965	3263965	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001128592.1	+1	validated	p.T74	0.545	141	0%	126	17.5%	42	19%	-	-	-	NULL
SLC22A23	63027	genome.wustl.edu	37	6	3287144	3287144	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015482.1	-1	validated	p.F499V	1.000	31	0%	27	29.6%	4	50%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
CAGE1	285782	genome.wustl.edu	37	6	7374203	7374203	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_205864.2	-1	validated	p.N147	0.000	234	0%	276	17.8%	0	-	-	-	-	NULL
PAK1IP1	55003	genome.wustl.edu	37	6	10704880	10704880	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017906.2	+1	validated	p.L213I	1.000	336	0%	385	26.5%	17	23.5%	benign(0.082)	tolerated(0.27)	neutral(0.040)	HMMSmart_WD40,superfamily_WD40_like
GFOD1	54438	genome.wustl.edu	37	6	13365493	13365493	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018988.2	-1	provisional	p.D219Y	1.000	82	0%	95	18.9%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Glyceraldehyde-3-phosphate dehydrogenase-like C-terminal domain
GFOD1	54438	genome.wustl.edu	37	6	13470161	13470161	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033069.2	-1	predicted	p.E118K	0.001	364	0%	432	21.3%	1	0%	unknown(0)	-	-	NULL
RNF182	221687	genome.wustl.edu	37	6	13977825	13977825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152737.3	+1	validated	p.D159N	1.000	313	0%	246	23.2%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CAP2	10486	genome.wustl.edu	37	6	17507500	17507500	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006366.2	+1	reviewed	p.S134L	0.998	185	0%	263	27.4%	0	-	possibly_damaging(0.85)	deleterious(0)	deleterious(0.772)	HMMPfam_CAP_N,superfamily_N-terminal domain of adenylylcyclase associated protein CAP
FAM65B	9750	genome.wustl.edu	37	6	24861222	24861222	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014722.2	-1	validated	p.E203K	1.000	163	0%	217	23.5%	5	20%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	NULL
TRIM38	10475	genome.wustl.edu	37	6	25983480	25983480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006355.2	+1	reviewed	p.E321D	0.000	166	0%	206	27.2%	23	43.4%	benign(0.001)	tolerated(0.57)	neutral(0.006)	HMMSmart_PRY
HIST1H3C	8352	genome.wustl.edu	37	6	26045670	26045670	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003531.2	+1	reviewed	p.S11C	1.000	54	0%	37	24.3%	0	-	possibly_damaging(0.832)	-	-	superfamily_Histone-fold
BTN3A3	10384	genome.wustl.edu	37	6	26444375	26444375	+	Silent	SNP	G	G	A	rs1057923		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006994.4	+1	validated	p.P92	0.021	505	0.6%	657	22.4%	42	9.5%	-	-	-	HMMSmart_IG,HMMPfam_V-set,superfamily_SSF48726
ZNF192	7745	genome.wustl.edu	37	6	28120885	28120885	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006298.2	+1	validated	p.S276Y	0.634	93	0%	116	10.3%	0	-	probably_damaging(0.99)	tolerated(0.07)	deleterious(0.760)	HMMSmart_SM00349
ZNF193	7746	genome.wustl.edu	37	6	28200592	28200592	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006299.3	+1	provisional	p.R274I	0.088	225	0%	281	31%	5	40%	probably_damaging(1)	tolerated(0.07)	deleterious(0.819)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF323	64288	genome.wustl.edu	37	6	28295166	28295166	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001135215.1	-1	validated	p.E176*	0.976	308	0%	442	11.3%	4	50%	-	-	-	NULL
GPX5	2880	genome.wustl.edu	37	6	28501803	28501803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001509.2	+1	reviewed	p.K175N	0.991	202	0%	213	26.8%	1	100%	probably_damaging(0.972)	tolerated(0.24)	neutral(0.451)	superfamily_Thiordxn-like_fd
OR2J2	26707	genome.wustl.edu	37	6	29142278	29142278	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030905.2	+1	validated	p.L289P	0.995	277	0%	422	23.9%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
LTA	4049	genome.wustl.edu	37	6	31541385	31541385	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000595.2	+1	reviewed	p.G178V	1.000	112	0%	134	29.1%	4	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_TNF,HMMSmart_SM00207,superfamily_TNF-like
BAK1	578	genome.wustl.edu	37	6	33541864	33541864	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001188.3	-1	reviewed	p.D160N	0.002	62	0%	74	20.3%	60	45%	benign(0.141)	tolerated(0.06)	neutral(0.335)	HMMPfam_Bcl-2,HMMSmart_SM00337,superfamily_Bcl-2 inhibitors of programmed cell death
TCP11	6954	genome.wustl.edu	37	6	35088079	35088079	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001093728.1	-1	validated	p.K337N	0.094	163	0%	171	26.9%	0	-	benign(0.017)	tolerated(0.24)	neutral(0.038)	HMMPfam_Tcp11
SCUBE3	222663	genome.wustl.edu	37	6	35200656	35200656	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152753.2	+1	provisional	p.G167S	1.000	198	0%	190	22.6%	0	-	possibly_damaging(0.728)	tolerated(0.07)	deleterious(0.584)	HMMPfam_EGF,HMMSmart_SM00181,superfamily_EGF/Laminin
TULP1	7287	genome.wustl.edu	37	6	35477677	35477677	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003322.3	-1	reviewed	p.P176	0.004	426	0%	390	26.7%	0	-	-	-	-	NULL
SRPK1	6732	genome.wustl.edu	37	6	35838195	35838195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003137.3	-1	reviewed	p.R285Q	1.000	770	0%	701	27%	2	0%	possibly_damaging(0.727)	tolerated(0.54)	neutral(0.272)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
PNPLA1	285848	genome.wustl.edu	37	6	36269931	36269931	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145716.1	+1	validated	p.P271S	0.001	163	0%	141	24.8%	1	0%	possibly_damaging(0.81)	deleterious(0)	deleterious(0.750)	NULL
C6orf222	389384	genome.wustl.edu	37	6	36298376	36298376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010903.4	-1	validated	p.S31L	0.003	21	0%	19	42.1%	1	0%	benign(0.186)	deleterious(0)	neutral(0.462)	NULL
TOMM6	100188893	genome.wustl.edu	37	6	41757003	41757003	+	Silent	SNP	G	G	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134493.1	+1	validated	p.A54	0.001	447	0%	417	12.9%	190	21.5%	-	-	-	NULL
PRPH2	5961	genome.wustl.edu	37	6	42689936	42689936	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000322.4	-1	reviewed	p.R46Q	0.958	70	1.4%	60	25%	1	0%	benign(0.123)	tolerated(0.32)	neutral(0.034)	HMMPfam_Tetraspannin
XPO5	57510	genome.wustl.edu	37	6	43528733	43528733	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020750.2	-1	validated	p.S341	0.929	238	0%	327	26%	3	66.6%	-	-	-	superfamily_ARM repeat
CLIC5	53405	genome.wustl.edu	37	6	45983235	45983235	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016929.3	-1	validated	p.E15	1.000	23	0%	14	57.1%	11	36.3%	-	-	-	superfamily_Thioredoxin-like
ENPP5	59084	genome.wustl.edu	37	6	46135174	46135174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021572.4	-1	validated	p.E276*	1.000	137	0%	180	19.4%	7	0%	-	-	-	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like
TDRD6	221400	genome.wustl.edu	37	6	46657801	46657801	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010870.2	+1	validated	p.L646I	0.995	157	0%	228	29.4%	0	-	probably_damaging(0.954)	tolerated(0.24)	neutral(0.435)	NULL
TDRD6	221400	genome.wustl.edu	37	6	46658617	46658617	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010870.2	+1	validated	p.L918I	0.000	62	0%	56	33.9%	0	-	probably_damaging(0.959)	tolerated(0.12)	deleterious(0.663)	NULL
GPR116	221395	genome.wustl.edu	37	6	46834846	46834846	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098518.1	-1	validated	p.K550N	0.013	283	0%	291	23.7%	10	0%	probably_damaging(0.988)	deleterious(0.05)	deleterious(0.783)	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
PTCHD4	442213	genome.wustl.edu	37	6	47847416	47847416	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001013732.3	-1	validated	p.S371	1.000	216	0%	260	10.8%	0	-	-	-	-	HMMPfam_Patched,superfamily_SSF82866
RHAG	6005	genome.wustl.edu	37	6	49583351	49583351	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000324.2	-1	reviewed	p.L209*	1.000	232	0%	221	29%	0	-	-	-	-	HMMPfam_Ammonium_transp,superfamily_RH_like_transpt
RHAG	6005	genome.wustl.edu	37	6	49585784	49585784	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000324.2	-1	reviewed	p.F163L	0.000	261	0%	332	28.3%	0	-	benign(0.001)	tolerated(1)	-	HMMPfam_Ammonium_transp,superfamily_RH_like_transpt
PGK2	5232	genome.wustl.edu	37	6	49754337	49754337	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138733.4	-1	reviewed	p.F188L	0.999	271	0%	209	22%	0	-	benign(0.201)	tolerated(0.16)	neutral(0.079)	HMMPfam_PGK,superfamily_PGK
DST	667	genome.wustl.edu	37	6	56394884	56394884	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015548.4	-1	reviewed	p.E3096A	1.000	432	0%	430	24.2%	4	0%	possibly_damaging(0.798)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DST	667	genome.wustl.edu	37	6	56471617	56471617	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000370769	-1	known	p.G2392	0.899	175	0%	187	28.3%	0	-	-	-	-	NULL
DST	667	genome.wustl.edu	37	6	56472450	56472450	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000370769	-1	known	p.I2115L	0.000	194	0%	170	17.6%	0	-	benign(0)	tolerated(0.06)	neutral(0.323)	NULL
DST	667	genome.wustl.edu	37	6	56473287	56473287	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000370769	-1	known	p.E1836K	1.000	173	0.6%	178	20.8%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00250,superfamily_Plakin repeat
DST	667	genome.wustl.edu	37	6	56473616	56473616	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000370769	-1	known	p.R1726I	1.000	363	0%	361	27.1%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_Plakin repeat
DST	667	genome.wustl.edu	37	6	56481342	56481342	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001723.5	-1	reviewed	p.R2308Q	0.113	136	0%	135	14.1%	0	-	benign(0)	tolerated(0.29)	neutral(0.029)	superfamily_SSF75399
DST	667	genome.wustl.edu	37	6	56569095	56569095	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000370769	-1	known	p.L76I	1.000	157	0%	190	26.3%	1	100%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_CH,HMMSmart_SM00033,superfamily_Calponin-homology domain CH-domain
BEND6	221336	genome.wustl.edu	37	6	56883320	56883320	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152731.2	+1	validated	p.N272H	1.000	224	0%	265	27.9%	1	0%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
BAI3	577	genome.wustl.edu	37	6	69665943	69665943	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001704.2	+1	reviewed	p.S408L	0.940	245	0%	294	29.3%	0	-	benign(0.054)	deleterious(0.02)	neutral(0.387)	HMMPfam_TSP_1,HMMSmart_SM00209,superfamily_TSP-1 type 1 repeat
COL19A1	1310	genome.wustl.edu	37	6	70778329	70778329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001858.4	+1	reviewed	p.I395M	0.001	343	0%	442	22.4%	0	-	unknown(0)	tolerated(0.17)	-	HMMPfam_Collagen
FAM135A	57579	genome.wustl.edu	37	6	71186900	71186900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001105531.2	+1	validated	p.R136Q	1.000	396	0%	405	24%	4	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
FAM135A	57579	genome.wustl.edu	37	6	71233777	71233777	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001105531.2	+1	validated	p.S404*	1.000	201	0%	273	31.5%	1	0%	-	-	-	NULL
KCNQ5	56479	genome.wustl.edu	37	6	73751711	73751711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019842.3	+1	reviewed	p.S181F	1.000	666	0%	920	20.4%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CD109	135228	genome.wustl.edu	37	6	74524800	74524800	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133493.3	+1	reviewed	p.E1289*	0.674	338	0%	331	18.7%	2	0%	-	-	-	superfamily_Alpha-macroglobulin receptor domain
HTR1B	3351	genome.wustl.edu	37	6	78172544	78172544	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000863.1	-1	provisional	p.E193K	1.000	72	0%	62	32.3%	0	-	benign(0.311)	tolerated(0.61)	neutral(0.101)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PHIP	55023	genome.wustl.edu	37	6	79655900	79655900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017934.5	-1	validated	p.R1483Q	0.996	655	0%	692	26.2%	7	14.2%	probably_damaging(0.999)	tolerated(0.66)	deleterious(0.493)	NULL
PHIP	55023	genome.wustl.edu	37	6	79725406	79725406	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017934.5	-1	validated	p.N444H	1.000	503	0%	577	21.7%	1	0%	probably_damaging(0.991)	deleterious(0.03)	deleterious(0.808)	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1
TTK	7272	genome.wustl.edu	37	6	80717677	80717677	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003318.4	+1	reviewed	p.A97	0.970	160	0%	193	16.1%	1	0%	-	-	-	NULL
DOPEY1	23033	genome.wustl.edu	37	6	83838692	83838692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015018.2	+1	validated	p.F602L	1.000	137	0%	155	27.1%	1	0%	possibly_damaging(0.676)	tolerated(1)	neutral(0.240)	NULL
SNAP91	9892	genome.wustl.edu	37	6	84310990	84310990	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014841.2	-1	validated	p.D442N	1.000	385	0%	453	26.5%	0	-	benign(0.355)	tolerated(0.1)	neutral(0.399)	NULL
ZNF292	23036	genome.wustl.edu	37	6	87964944	87964944	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015021.1	+1	validated	p.R533W	1.000	300	0%	391	19.7%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
AKIRIN2	55122	genome.wustl.edu	37	6	88387589	88387589	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018064.3	-1	validated	p.R159H	1.000	469	0%	547	22.9%	25	12%	probably_damaging(0.995)	tolerated(0.37)	deleterious(0.477)	NULL
CNR1	1268	genome.wustl.edu	37	6	88854102	88854102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016083.4	-1	reviewed	p.L298I	0.999	125	0%	79	25.3%	0	-	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
MDN1	23195	genome.wustl.edu	37	6	90359883	90359883	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014611.1	-1	provisional	p.R5356W	1.000	296	0%	320	21.2%	10	10%	unknown(0)	deleterious(0)	-	NULL
MDN1	23195	genome.wustl.edu	37	6	90504476	90504476	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014611.1	-1	provisional	p.R125I	1.000	161	0%	137	20.4%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MANEA	79694	genome.wustl.edu	37	6	96034476	96034476	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024641.2	+1	validated	p.H54P	0.478	343	0%	289	26.3%	2	0%	benign(0)	tolerated(0.39)	neutral(0.016)	NULL
MMS22L	253714	genome.wustl.edu	37	6	97676836	97676836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198468.2	-1	predicted	p.R658Q	0.919	164	0%	190	28.9%	0	-	possibly_damaging(0.755)	tolerated(0.41)	neutral(0.294)	NULL
FBXL4	26235	genome.wustl.edu	37	6	99323582	99323582	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012160.3	-1	reviewed	p.A471T	1.000	27	0%	19	47.4%	7	28.5%	benign(0.002)	tolerated(0.1)	neutral(0.286)	superfamily_SSF52047
ASCC3	10973	genome.wustl.edu	37	6	100988055	100988055	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006828.2	-1	validated	p.A1920V	1.000	428	0%	413	22%	16	18.7%	benign(0.077)	deleterious(0)	neutral(0.450)	HMMPfam_Sec63,HMMSmart_SEC63
AIM1	202	genome.wustl.edu	37	6	106987390	106987390	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001624.2	+1	validated	p.R1203W	1.000	183	0%	221	29.4%	6	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
AIM1	202	genome.wustl.edu	37	6	107009238	107009238	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001624.2	+1	validated	p.R1593*	1.000	250	0%	299	18.7%	9	0%	-	-	-	HMMPfam_Ricin_B_lectin,HMMSmart_RICIN,superfamily_RicinB_like
NR2E1	7101	genome.wustl.edu	37	6	108508651	108508651	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003269.3	+1	validated	p.K381T	1.000	222	0%	231	27.7%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	superfamily_Nuclear receptor ligand-binding domain
SESN1	27244	genome.wustl.edu	37	6	109322639	109322639	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014454.1	-1	provisional	p.S133Y	1.000	235	0%	261	21.5%	3	33.3%	benign(0.355)	tolerated(0.28)	neutral(0.144)	HMMPfam_PA26,superfamily_SSF69118
AKD1	221264	genome.wustl.edu	37	6	109854505	109854505	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000424296	-1	known	p.K252N	0.544	644	0%	738	27.1%	0	-	benign(0.022)	tolerated(0.54)	neutral(0.009)	superfamily_SSF52540
RPF2	84154	genome.wustl.edu	37	6	111318455	111318455	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032194.1	+1	validated	p.N102H	1.000	268	0%	313	31%	22	18.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Brix
KIAA1919	91749	genome.wustl.edu	37	6	111587429	111587429	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153369.2	+1	validated	p.R222*	0.226	491	0%	467	26.3%	0	-	-	-	-	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
REV3L	5980	genome.wustl.edu	37	6	111694205	111694205	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002912.3	-1	validated	p.E1785*	1.000	348	0%	367	25.1%	2	50%	-	-	-	superfamily_Ribonuclease H-like
NT5DC1	221294	genome.wustl.edu	37	6	116439048	116439048	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152729.2	+1	reviewed	p.D157Y	1.000	463	0%	501	25.7%	11	36.3%	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	HMMPfam_5_nucleotid
NT5DC1	221294	genome.wustl.edu	37	6	116558183	116558183	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152729.2	+1	reviewed	p.S286F	1.000	123	0%	150	26.7%	36	52.7%	probably_damaging(0.976)	deleterious(0)	deleterious(0.863)	HMMPfam_5_nucleotid
RFX6	222546	genome.wustl.edu	37	6	117243304	117243304	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173560.2	+1	validated	p.R476I	1.000	348	0%	353	28%	0	-	possibly_damaging(0.846)	tolerated(0.31)	neutral(0.352)	NULL
RFX6	222546	genome.wustl.edu	37	6	117250120	117250120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173560.2	+1	validated	p.R866Q	1.000	121	0%	155	27.1%	0	-	possibly_damaging(0.501)	deleterious(0.01)	deleterious(0.573)	NULL
FAM184A	79632	genome.wustl.edu	37	6	119295644	119295644	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024581.4	-1	validated	p.F955S	1.000	657	0%	707	27.9%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	NULL
FAM184A	79632	genome.wustl.edu	37	6	119324140	119324140	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024581.4	-1	validated	p.L671R	1.000	306	0%	344	32.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
GJA1	2697	genome.wustl.edu	37	6	121768150	121768150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000165.3	+1	reviewed	p.R53C	0.998	200	0%	234	30.8%	19	0%	possibly_damaging(0.768)	tolerated(0.1)	deleterious(0.571)	HMMPfam_Connexin,HMMSmart_CNX
SMPDL3A	10924	genome.wustl.edu	37	6	123130404	123130404	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006714.3	+1	validated	p.K405Q	0.516	186	0%	208	28.8%	10	10%	benign(0.05)	tolerated(0.13)	neutral(0.256)	NULL
TRDN	10345	genome.wustl.edu	37	6	123581763	123581763	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006073.2	-1	validated	p.E609*	0.995	214	0%	188	26.6%	0	-	-	-	-	NULL
TRDN	10345	genome.wustl.edu	37	6	123703283	123703283	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006073.2	-1	validated	p.K382R	1.000	162	0%	170	34.1%	0	-	possibly_damaging(0.936)	tolerated(0.44)	neutral(0.394)	NULL
TRMT11	60487	genome.wustl.edu	37	6	126317156	126317156	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001031712.2	+1	validated	p.R61I	1.000	376	0%	574	25.6%	1	100%	benign(0.263)	tolerated(0.39)	neutral(0.043)	NULL
ECHDC1	55862	genome.wustl.edu	37	6	127648168	127648168	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001139510.1	-1	validated	p.V120	0.997	215	0%	249	20.9%	30	23.3%	-	-	-	HMMPfam_ECH,superfamily_ClpP/crotonase
THEMIS	387357	genome.wustl.edu	37	6	128135035	128135035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010923.2	-1	reviewed	p.E251K	1.000	243	0%	214	37.4%	2	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
LAMA2	3908	genome.wustl.edu	37	6	129371128	129371128	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000426.3	+1	reviewed	p.E60*	0.999	505	0%	583	30.9%	3	0%	-	-	-	HMMPfam_Laminin_N,HMMSmart_LamNT
LAMA2	3908	genome.wustl.edu	37	6	129475693	129475693	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000426.3	+1	reviewed	p.E357D	1.000	279	0%	304	27%	2	0%	benign(0.042)	tolerated(0.13)	neutral(0.255)	HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,superfamily_ConA_like_lec_gl,superfamily_SSF57196
LAMA2	3908	genome.wustl.edu	37	6	129723624	129723624	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000426.3	+1	reviewed	p.V1906	0.729	136	0%	150	26.7%	2	0%	-	-	-	superfamily_ConA_like_lec_gl,superfamily_SSF56399
ARHGAP18	93663	genome.wustl.edu	37	6	129929194	129929194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033515.2	-1	validated	p.L376I	1.000	74	0%	74	25.7%	14	7.1%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
MED23	9439	genome.wustl.edu	37	6	131941857	131941857	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004830.2	-1	reviewed	p.I170L	1.000	199	0%	194	25.3%	1	100%	benign(0.093)	tolerated(0.35)	neutral(0.028)	NULL
TAAR9	134860	genome.wustl.edu	37	6	132859486	132859486	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_175057.3	+1	reviewed	p.E20K	0.050	263	0%	277	14.1%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_Family A G protein-coupled receptor-like
VNN1	8876	genome.wustl.edu	37	6	133013532	133013532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004666.2	-1	reviewed	p.D340N	0.948	237	0%	211	28.4%	1	0%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
EYA4	2070	genome.wustl.edu	37	6	133783601	133783601	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004100.4	+1	reviewed	p.S189I	1.000	355	0%	400	24.5%	0	-	probably_damaging(0.955)	deleterious(0)	deleterious(0.843)	NULL
EYA4	2070	genome.wustl.edu	37	6	133846173	133846173	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_172105.3	+1	reviewed	p.R587C	1.000	279	0%	370	25.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Hydrolase
MAP3K5	4217	genome.wustl.edu	37	6	136883734	136883734	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005923.3	-1	reviewed	p.R1261W	0.989	556	0%	502	32.7%	11	27.2%	probably_damaging(0.968)	deleterious(0)	deleterious(0.855)	NULL
HECA	51696	genome.wustl.edu	37	6	139488200	139488200	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016217.2	+1	reviewed	p.E351K	1.000	36	0%	45	26.7%	8	25%	possibly_damaging(0.942)	tolerated(0.2)	neutral(0.436)	NULL
TXLNB	167838	genome.wustl.edu	37	6	139564407	139564407	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153235.3	-1	validated	p.I437	0.390	214	0%	246	28.9%	0	-	-	-	-	HMMPfam_Taxilin
PLAGL1	5325	genome.wustl.edu	37	6	144263034	144263034	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080951.1	-1	reviewed	p.S307A	0.015	180	0%	365	27.4%	6	0%	possibly_damaging(0.746)	deleterious(0.04)	deleterious(0.623)	NULL
ADGB	79747	genome.wustl.edu	37	6	147123049	147123049	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024694.3	+1	provisional	p.R1574*	0.925	146	0.7%	171	18.7%	0	-	-	-	-	NULL
SYNE1	23345	genome.wustl.edu	37	6	152527386	152527386	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182961.2	-1	reviewed	p.E7646K	1.000	189	0%	180	27.8%	3	0%	benign(0.016)	deleterious(0.01)	neutral(0.406)	HMMSmart_SM00150,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152539529	152539529	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182961.2	-1	reviewed	p.L7352I	1.000	230	0%	260	26.5%	4	0%	benign(0.004)	tolerated(0.54)	neutral(0.007)	HMMPfam_Spectrin,superfamily_Spectrin repeat
SYNE1	23345	genome.wustl.edu	37	6	152647133	152647133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182961.2	-1	reviewed	p.S5133L	1.000	474	0%	507	28.6%	0	-	benign(0.08)	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
TIAM2	26230	genome.wustl.edu	37	6	155575144	155575144	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012454.3	+1	reviewed	p.T1421	0.041	284	0%	328	18.9%	3	33.3%	-	-	-	HMMSmart_SM00233,superfamily_PH domain-like
CLDN20	49861	genome.wustl.edu	37	6	155597320	155597320	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001001346.3	+1	reviewed	p.N156S	0.993	113	0%	133	19.5%	0	-	benign(0)	tolerated(0.54)	neutral(0.007)	HMMPfam_PMP22_Claudin
NOX3	50508	genome.wustl.edu	37	6	155750120	155750120	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015718.2	-1	reviewed	p.A318V	0.872	75	1.3%	81	25.9%	0	-	benign(0.002)	tolerated(0.07)	neutral(0.319)	HMMPfam_FAD_binding_8,superfamily_Riboflavin_synthase_like_b-brl
IGF2R	3482	genome.wustl.edu	37	6	160510272	160510272	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000876.2	+1	reviewed	p.D2152Y	0.111	141	0%	155	11%	30	30%	probably_damaging(0.971)	deleterious(0.02)	deleterious(0.796)	superfamily_Mannose 6-phosphate receptor domain
THBS2	7058	genome.wustl.edu	37	6	169641908	169641908	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003247.2	-1	reviewed	p.L280	0.158	61	0%	40	27.5%	7	0%	-	-	-	NULL
BRAT1	221927	genome.wustl.edu	37	7	2578894	2578894	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152743.2	-1	provisional	p.A563	0.009	20	0%	20	45%	25	40%	-	-	-	HMMPfam_HEAT,superfamily_ARM repeat
SDK1	221935	genome.wustl.edu	37	7	4218132	4218132	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152744.3	+1	validated	p.R1671Q	1.000	97	0%	78	29.5%	3	33.3%	benign(0.025)	deleterious(0.01)	neutral(0.407)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SDK1	221935	genome.wustl.edu	37	7	4247866	4247866	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152744.3	+1	validated	p.A1784T	0.999	197	0.5%	167	18.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
PAPOLB	56903	genome.wustl.edu	37	7	4899770	4899770	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020144.4	-1	validated	p.P558S	0.908	170	0%	167	23.4%	0	-	benign(0.004)	tolerated(0.38)	neutral(0.018)	NULL
ENSG00000198580	0	genome.wustl.edu	37	7	6714740	6714740	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000401847	+1	known	p.R151I	0.097	31	0%	31	38.7%	0	-	possibly_damaging(0.906)	deleterious(0.04)	deleterious(0.708)	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF12	7559	genome.wustl.edu	37	7	6731998	6731998	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016265.3	-1	reviewed	p.F192C	0.019	154	0%	171	28.7%	2	0%	benign(0.014)	tolerated(0.29)	neutral(0.030)	NULL
CCZ1B	221960	genome.wustl.edu	37	7	6864324	6864324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198097.2	-1	predicted	p.K55N	1.000	671	0%	882	13.4%	10	20%	benign(0.195)	deleterious(0.05)	neutral(0.364)	HMMPfam_DUF2049
COL28A1	340267	genome.wustl.edu	37	7	7563879	7563879	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001037763.2	-1	validated	p.D228A	0.866	327	0%	333	26.7%	0	-	benign(0.077)	tolerated(0.72)	neutral(0.007)	HMMSmart_SM00327,superfamily_vWA-like
LOC340268	340268	genome.wustl.edu	37	7	9766827	9766827	+	RNA	SNP	G	G	A	rs61747376	byFrequency	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XR_041608.1	+1	model	NULL	1.000	123	0%	63	22.2%	0	-	-	-	-	-
LOC340268	340268	genome.wustl.edu	37	7	9767394	9767394	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XR_041608.1	+1	model	NULL	0.997	137	0%	141	22.7%	0	-	-	-	-	-
PHF14	9678	genome.wustl.edu	37	7	11078433	11078433	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000303905	+1	known	p.R676Q	1.000	326	0%	335	21.2%	13	53.8%	possibly_damaging(0.568)	tolerated(0.54)	neutral(0.202)	NULL
SNX13	23161	genome.wustl.edu	37	7	17838724	17838724	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015132.4	-1	reviewed	p.F784L	0.916	393	0%	545	18.7%	13	30.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
PRPS1L1	221823	genome.wustl.edu	37	7	18066712	18066712	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_175886.2	-1	reviewed	p.A232T	0.989	171	0.6%	185	28.1%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Pribosyltran,superfamily_PRTase-like
MACC1	346389	genome.wustl.edu	37	7	20199213	20199213	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182762.3	-1	validated	p.P257	1.000	177	0%	202	27.7%	0	-	-	-	-	NULL
SP4	6671	genome.wustl.edu	37	7	21550808	21550808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003112.3	+1	validated	p.R759I	1.000	260	0%	258	15.9%	2	0%	possibly_damaging(0.794)	tolerated(0.16)	neutral(0.357)	NULL
SP4	6671	genome.wustl.edu	37	7	21550841	21550841	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003112.3	+1	validated	p.S770L	1.000	239	0%	223	25.1%	2	50%	probably_damaging(0.959)	deleterious(0)	deleterious(0.847)	NULL
DNAH11	8701	genome.wustl.edu	37	7	21906202	21906202	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003777.3	+1	reviewed	p.E3878*	1.000	249	0%	265	28.3%	1	0%	-	-	-	HMMPfam_Dynein_heavy
RAPGEF5	9771	genome.wustl.edu	37	7	22197475	22197475	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012294.3	-1	validated	p.K366Q	1.000	359	0%	425	25.6%	4	25%	probably_damaging(1)	tolerated(0.43)	deleterious(0.513)	superfamily_Ras GEF
KLHL7	55975	genome.wustl.edu	37	7	23205471	23205471	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001031710.2	+1	reviewed	p.S364L	1.000	243	0%	243	27.6%	7	28.5%	probably_damaging(0.96)	deleterious(0.01)	deleterious(0.808)	HMMSmart_Kelch,superfamily_Gal_oxid_central
TRA2A	29896	genome.wustl.edu	37	7	23545855	23545855	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013293.3	-1	reviewed	p.G224	0.094	194	0%	202	24.8%	21	47.6%	-	-	-	superfamily_RNA-binding domain RBD
GHRHR	2692	genome.wustl.edu	37	7	31018817	31018817	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000823.3	+1	reviewed	p.T410	0.101	88	0%	88	31.8%	0	-	-	-	-	superfamily_SSF81321
CCDC129	223075	genome.wustl.edu	37	7	31682572	31682572	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_194300.2	+1	validated	p.R530	0.000	129	0%	125	20%	2	0%	-	-	-	NULL
PDE1C	5137	genome.wustl.edu	37	7	32109928	32109928	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005020.1	-1	provisional	p.K26N	1.000	305	0%	335	31.3%	1	100%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	NULL
GPR141	353345	genome.wustl.edu	37	7	37780877	37780877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181791.1	+1	provisional	p.K294N	0.998	240	0%	311	27%	2	0%	benign(0.073)	deleterious(0)	neutral(0.450)	superfamily_SSF81321
AMPH	273	genome.wustl.edu	37	7	38574564	38574564	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001635.2	-1	reviewed	p.F39	1.000	629	0%	695	28.3%	2	0%	-	-	-	HMMPfam_BAR,HMMSmart_SM00721
VPS41	27072	genome.wustl.edu	37	7	38768382	38768382	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014396.3	-1	reviewed	p.R757C	1.000	300	0.3%	290	18.3%	4	25%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
STK17A	9263	genome.wustl.edu	37	7	43664257	43664257	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004760.2	+1	reviewed	p.S354L	0.025	126	0%	154	26%	32	12.5%	benign(0.183)	tolerated(0.17)	neutral(0.076)	NULL
UBE2D4	51619	genome.wustl.edu	37	7	43988248	43988248	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015983.2	+1	provisional	p.K72N	1.000	260	0%	309	19.1%	18	22.2%	benign(0.134)	deleterious(0)	neutral(0.456)	HMMPfam_UQ_con,HMMSmart_SM00212,superfamily_UBC-like
PGAM2	5224	genome.wustl.edu	37	7	44102513	44102513	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000290.3	-1	reviewed	p.A204	1.000	189	0%	155	18.1%	6	0%	-	-	-	superfamily_SSF53254
IGFBP1	3484	genome.wustl.edu	37	7	45931541	45931541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000596.2	+1	reviewed	p.R177Q	0.553	180	0%	202	26.2%	1	0%	benign(0.022)	tolerated(1)	neutral(0.001)	HMMPfam_Thyroglobulin_1,superfamily_Thyroglobulin type-1 domain
UPP1	7378	genome.wustl.edu	37	7	48141471	48141471	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003364.2	+1	validated	p.C71	0.889	232	0%	240	27.5%	23	17.3%	-	-	-	HMMPfam_PNP_UDP_1,superfamily_Purine and uridine phosphorylases
ABCA13	154664	genome.wustl.edu	37	7	48545984	48545984	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152701.3	+1	reviewed	p.K4448N	1.000	276	0%	347	27.1%	0	-	benign(0.006)	-	-	NULL
GRB10	2887	genome.wustl.edu	37	7	50663160	50663160	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005311.4	-1	reviewed	p.K538*	1.000	297	0.3%	329	29.2%	11	18.1%	-	-	-	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
GRB10	2887	genome.wustl.edu	37	7	50680498	50680498	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005311.4	-1	reviewed	p.L378F	1.000	368	0%	395	25.8%	14	7.1%	benign(0.004)	tolerated(0.32)	neutral(0.024)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
ZNF479	90827	genome.wustl.edu	37	7	57200024	57200024	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033273.1	-1	provisional	p.K3T	0.103	241	0%	209	14.8%	0	-	probably_damaging(0.99)	deleterious(0.02)	deleterious(0.825)	NULL
ZNF679	168417	genome.wustl.edu	37	7	63726874	63726874	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153363.2	+1	validated	p.R288I	1.000	102	0%	120	27.5%	0	-	probably_damaging(0.997)	tolerated(0.25)	deleterious(0.503)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF679	168417	genome.wustl.edu	37	7	63727108	63727108	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153363.2	+1	validated	p.T366N	0.000	138	0%	170	21.2%	0	-	benign(0.003)	tolerated(0.54)	neutral(0.007)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF273	10793	genome.wustl.edu	37	7	64389311	64389311	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021148.2	+1	reviewed	p.I535M	0.425	177	0%	227	24.2%	0	-	probably_damaging(0.987)	deleterious(0)	deleterious(0.881)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ERV3-1	2086	genome.wustl.edu	37	7	64452432	64452432	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001007253.3	-1	reviewed	p.E325K	0.038	398	0%	455	24.6%	4	0%	benign(0.002)	tolerated(0.26)	neutral(0.034)	NULL
ZNF92	168374	genome.wustl.edu	37	7	64863537	64863537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152626.2	+1	validated	p.K170N	0.959	190	0%	186	11.8%	1	0%	benign(0.047)	deleterious(0.04)	neutral(0.352)	superfamily_C2H2 and C2HC zinc fingers
ASL	435	genome.wustl.edu	37	7	65546843	65546843	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000048.3	+1	reviewed	p.E22D	1.000	68	0%	70	27.1%	18	33.3%	benign(0.001)	tolerated(0.3)	neutral(0.029)	HMMPfam_Lyase_1,superfamily_L-Aspartase-like
AUTS2	26053	genome.wustl.edu	37	7	70250999	70250999	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000449547	+1	known	p.S84L	1.000	326	0%	278	27%	6	16.6%	-	-	-	NULL
CALN1	83698	genome.wustl.edu	37	7	71743707	71743707	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031468.3	-1	validated	p.E70K	1.000	124	0%	104	27.9%	0	-	benign(0.004)	tolerated(0.49)	neutral(0.011)	NULL
FZD9	8326	genome.wustl.edu	37	7	72849620	72849620	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003508.2	+1	reviewed	p.R428H	1.000	88	0%	80	25%	1	100%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Frizzled
BAZ1B	9031	genome.wustl.edu	37	7	72892665	72892665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032408.3	-1	validated	p.N376D	0.560	372	0%	426	14.3%	8	25%	benign(0.003)	tolerated(0.05)	neutral(0.345)	NULL
STX1A	6804	genome.wustl.edu	37	7	73117213	73117213	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004603.3	-1	reviewed	p.D214N	1.000	112	0%	116	15.5%	6	83.3%	benign(0.184)	tolerated(0.06)	neutral(0.340)	HMMPfam_SNARE,HMMSmart_SM00397,PatternScan_SYNTAXIN,superfamily_t-snare proteins
GTF2IRD2	84163	genome.wustl.edu	37	7	74212066	74212066	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173537.2	-1	validated	p.I595	0.873	248	0%	246	26%	3	66.6%	-	-	-	NULL
FGL2	10875	genome.wustl.edu	37	7	76828828	76828828	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006682.2	-1	reviewed	p.S95P	0.674	204	0%	237	27.4%	16	25%	benign(0.264)	deleterious(0.05)	neutral(0.373)	NULL
CCDC146	57639	genome.wustl.edu	37	7	76908093	76908093	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020879.2	+1	validated	p.E489K	0.998	282	0%	344	25.6%	2	50%	possibly_damaging(0.832)	tolerated(0.07)	deleterious(0.636)	NULL
PHTF2	57157	genome.wustl.edu	37	7	77567099	77567099	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001127357.1	+1	validated	p.D437Y	1.000	180	0%	213	34.3%	2	0%	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	NULL
PCLO	27445	genome.wustl.edu	37	7	82580669	82580669	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033026.5	-1	validated	p.G3079R	1.000	367	0%	421	29.9%	0	-	probably_damaging(1)	-	-	NULL
GRM3	2913	genome.wustl.edu	37	7	86468379	86468379	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000840.2	+1	reviewed	p.E517*	1.000	132	0%	137	24.1%	0	-	-	-	-	HMMPfam_NCD3G,superfamily_Periplasmic binding protein-like I
ABCB1	5243	genome.wustl.edu	37	7	87183240	87183240	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000927.3	-1	reviewed	p.K279T	1.000	607	0%	556	14.6%	8	0%	benign(0.001)	deleterious(0.04)	neutral(0.349)	HMMPfam_ABC_membrane,superfamily_Multidrug resistance ABC transporter MsbA N-terminal domain
SLC25A40	55972	genome.wustl.edu	37	7	87479242	87479242	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018843.2	-1	validated	p.R96*	1.000	133	0%	93	17.2%	4	25%	-	-	-	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
C7orf62	219557	genome.wustl.edu	37	7	88423853	88423853	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152706.2	-1	predicted	p.S135Y	0.778	118	0%	105	22.9%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	NULL
ZNF804B	219578	genome.wustl.edu	37	7	88964905	88964905	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181646.2	+1	provisional	p.R870I	0.000	106	0%	115	23.5%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
C7orf63	79846	genome.wustl.edu	37	7	89887447	89887447	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001039706.2	+1	validated	p.K72N	0.969	231	0%	308	22.7%	0	-	probably_damaging(0.982)	deleterious(0.03)	deleterious(0.791)	superfamily_ARM-type_fold
ENSG00000240720	0	genome.wustl.edu	37	7	91793381	91793381	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000430130	-1	known	p.L379P	0.980	86	0%	66	21.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00369,superfamily_L domain-like
SAMD9	54809	genome.wustl.edu	37	7	92731023	92731023	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017654.2	-1	validated	p.S1463Y	0.972	304	0.3%	278	20.9%	8	50%	probably_damaging(0.981)	deleterious(0.02)	deleterious(0.808)	NULL
SAMD9	54809	genome.wustl.edu	37	7	92732061	92732061	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017654.2	-1	validated	p.S1117Y	1.000	207	0%	228	25.4%	1	0%	probably_damaging(0.981)	deleterious(0)	deleterious(0.870)	NULL
CCDC132	55610	genome.wustl.edu	37	7	92953033	92953033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017667.2	+1	validated	p.R656W	1.000	247	0%	239	22.2%	6	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
PON1	5444	genome.wustl.edu	37	7	94928407	94928407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000446.5	-1	reviewed	p.R306Q	0.462	123	0%	94	24.5%	0	-	possibly_damaging(0.716)	tolerated(0.1)	deleterious(0.545)	superfamily_Calcium-dependent phosphotriesterase
LMTK2	22853	genome.wustl.edu	37	7	97821038	97821038	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014916.3	+1	reviewed	p.D421N	1.000	102	0%	122	21.3%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_Protein kinase-like (PK-like)
TRRAP	8295	genome.wustl.edu	37	7	98487990	98487990	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003496.2	+1	validated	p.F61	1.000	458	0%	493	15.4%	0	-	-	-	-	superfamily_ARM repeat
SMURF1	57154	genome.wustl.edu	37	7	98655050	98655050	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020429.1	-1	reviewed	p.D110Y	1.000	463	0%	342	26.6%	4	0%	probably_damaging(0.987)	deleterious(0.02)	deleterious(0.820)	HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
FAM200A	221786	genome.wustl.edu	37	7	99145297	99145297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145111.2	-1	validated	p.R245Q	0.849	266	0%	319	23.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STAG3	10734	genome.wustl.edu	37	7	99798391	99798391	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012447.2	+1	validated	e18-1	1.000	53	0%	52	21.2%	3	33.3%	-	-	-	-
ZAN	7455	genome.wustl.edu	37	7	100364270	100364270	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003386.1	+1	reviewed	p.I1531	0.084	81	0%	92	28.3%	0	-	-	-	-	HMMSmart_SM00215
SRRT	51593	genome.wustl.edu	37	7	100486236	100486236	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000445337	+1	known	p.R134I	0.994	81	0%	67	20.9%	39	46.1%	unknown(0)	-	-	NULL
MUC12	10071	genome.wustl.edu	37	7	100638739	100638739	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000379442	+1	known	p.S1775Y	0.001	1010	0.3%	1304	16.3%	0	-	unknown(0)	-	-	NULL
LRRC17	10234	genome.wustl.edu	37	7	102574546	102574546	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001031692.2	+1	validated	p.E62	0.998	79	0%	52	30.8%	0	-	-	-	-	superfamily_RNI-like
LHFPL3	375612	genome.wustl.edu	37	7	103969614	103969614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_199000.2	+1	reviewed	p.F129L	1.000	146	0%	101	29.7%	0	-	possibly_damaging(0.463)	tolerated(0.36)	neutral(0.172)	HMMPfam_L_HGMIC_fpl
MLL5	55904	genome.wustl.edu	37	7	104746993	104746993	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018682.3	+1	reviewed	p.R874Q	1.000	217	0%	240	27.5%	11	0%	unknown(0)	deleterious(0.01)	-	NULL
PUS7	54517	genome.wustl.edu	37	7	105103129	105103129	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019042.3	-1	validated	p.R566*	1.000	427	0.2%	424	23.6%	1	0%	-	-	-	HMMPfam_TruD,superfamily_PsdUridine_synth_cat_dom
CDHR3	222256	genome.wustl.edu	37	7	105655615	105655615	+	Missense_Mutation	SNP	C	C	T	rs141860028	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152750.4	+1	validated	p.T428M	0.000	307	0.7%	343	17.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00112,superfamily_Cadherin-like
PIK3CG	5294	genome.wustl.edu	37	7	106545739	106545739	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002649.2	+1	reviewed	p.I1072	0.111	207	0%	309	22.7%	2	0%	-	-	-	HMMSmart_SM00146,superfamily_Protein kinase-like (PK-like)
SLC26A4	5172	genome.wustl.edu	37	7	107303845	107303845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000441.1	+1	reviewed	p.S90L	0.997	267	0%	260	28.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CBLL1	79872	genome.wustl.edu	37	7	107389385	107389385	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024814.2	+1	validated	p.R25Q	1.000	320	0%	401	24.2%	1	0%	possibly_damaging(0.451)	tolerated(0.12)	neutral(0.408)	NULL
THAP5	168451	genome.wustl.edu	37	7	108205150	108205150	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001130475.1	-1	validated	p.L225I	0.008	135	0%	169	30.2%	3	33.3%	benign(0.001)	tolerated(0.29)	neutral(0.029)	NULL
GPR85	54329	genome.wustl.edu	37	7	112724143	112724143	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018970.6	-1	validated	p.R212*	1.000	124	0%	103	27.2%	4	0%	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
PPP1R3A	5506	genome.wustl.edu	37	7	113518125	113518125	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002711.3	-1	reviewed	p.L1008I	0.036	423	0%	443	25.3%	0	-	possibly_damaging(0.911)	tolerated(0.15)	deleterious(0.604)	NULL
TES	26136	genome.wustl.edu	37	7	115889245	115889245	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015641.2	+1	reviewed	p.T95	1.000	226	0%	228	27.2%	33	30.3%	-	-	-	HMMPfam_PET
MET	4233	genome.wustl.edu	37	7	116339325	116339325	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001127500.1	+1	reviewed	p.F63V	1.000	255	0%	273	12.8%	1	0%	possibly_damaging(0.434)	deleterious(0)	deleterious(0.586)	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
CFTR	1080	genome.wustl.edu	37	7	117232393	117232393	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000492.3	+1	reviewed	p.I724	0.002	115	0%	157	23.6%	2	50%	-	-	-	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121616298	121616298	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002851.2	+1	reviewed	p.L176	1.000	395	0%	438	26.9%	0	-	-	-	-	HMMPfam_Carb_anhydrase,superfamily_Carbonic anhydrase
PTPRZ1	5803	genome.wustl.edu	37	7	121650505	121650505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002851.2	+1	reviewed	p.R469C	0.044	162	0%	263	31.2%	0	-	possibly_damaging(0.875)	deleterious(0.01)	deleterious(0.746)	NULL
PTPRZ1	5803	genome.wustl.edu	37	7	121652851	121652851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002851.2	+1	reviewed	p.H1251N	0.085	192	0%	156	23.1%	0	-	benign(0)	tolerated(1)	-	NULL
NDUFA5	4698	genome.wustl.edu	37	7	123197546	123197546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000470123	-1	known	p.G3E	0.018	90	0%	115	15.7%	0	-	benign(0.003)	-	-	NULL
ASB15	142685	genome.wustl.edu	37	7	123276904	123276904	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_080928.3	+1	validated	p.R546*	1.000	140	0%	145	22.1%	0	-	-	-	-	HMMPfam_SOCS_box,HMMSmart_SM00253
LMOD2	442721	genome.wustl.edu	37	7	123303136	123303136	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207163.1	+1	validated	p.S499Y	1.000	206	0%	280	31.1%	0	-	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ZNF800	168850	genome.wustl.edu	37	7	127014946	127014946	+	Silent	SNP	C	C	T	rs185441151	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000265827	-1	known	p.S148	1.000	317	0.3%	359	18.9%	6	33.3%	-	-	-	NULL
CCDC136	64753	genome.wustl.edu	37	7	128434764	128434764	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022742.3	+1	validated	p.E96	0.998	76	0%	60	25%	0	-	-	-	-	NULL
CPA2	1358	genome.wustl.edu	37	7	129909625	129909625	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001869.2	+1	reviewed	p.I90	1.000	229	0%	233	31.3%	0	-	-	-	-	HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors
PLXNA4	91584	genome.wustl.edu	37	7	131870220	131870220	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020911.1	-1	validated	p.R999Q	1.000	132	0%	98	21.4%	2	0%	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMPfam_TIG,HMMSmart_SM00429,superfamily_E set domains
AGBL3	340351	genome.wustl.edu	37	7	134722182	134722182	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178563.3	+1	provisional	p.R451*	1.000	247	0%	358	28.2%	0	-	-	-	-	HMMPfam_Peptidase_M14,superfamily_Zn-dependent exopeptidases
CLEC5A	23601	genome.wustl.edu	37	7	141635728	141635728	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013252.2	-1	reviewed	p.F77L	0.006	327	0%	367	22.9%	1	0%	benign(0.001)	tolerated(0.76)	neutral(0.001)	HMMSmart_SM00034,superfamily_C-type lectin-like
TRBV5-4	28611	genome.wustl.edu	37	7	142168646	142168646	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000454561	-1	known	p.S26N	0.000	396	0%	449	18%	0	-	possibly_damaging(0.869)	tolerated(0.21)	neutral(0.381)	HMMPfam_V-set,superfamily_Immunoglobulin
TRBV6-4	28603	genome.wustl.edu	37	7	142250754	142250754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000390360	-1	known	p.A98V	0.000	131	0%	143	25.9%	0	-	benign(0)	tolerated(0.08)	neutral(0.300)	HMMPfam_V-set,superfamily_SSF48726
TRBV19	28568	genome.wustl.edu	37	7	142326870	142326870	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000390393	+1	known	p.Q56H	0.599	118	0%	140	27.9%	13	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
CLCN1	1180	genome.wustl.edu	37	7	143016866	143016866	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000083.2	+1	reviewed	p.E67*	0.163	274	0%	276	28.6%	0	-	-	-	-	NULL
OR6B1	135946	genome.wustl.edu	37	7	143701989	143701989	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005281.1	+1	provisional	p.K300N	1.000	102	0%	141	27%	0	-	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	superfamily_Family A G protein-coupled receptor-like
PDIA4	9601	genome.wustl.edu	37	7	148709358	148709358	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004911.4	-1	validated	p.A237T	1.000	199	0%	227	30%	98	23.4%	probably_damaging(0.998)	deleterious(0.02)	deleterious(0.857)	superfamily_Thioredoxin-like,HMMPfam_Thioredoxin
SSPO	23145	genome.wustl.edu	37	7	149515561	149515561	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000378016	+1	known	p.T3872	0.052	184	0%	156	23.1%	0	-	-	-	-	NULL
ABP1	26	genome.wustl.edu	37	7	150554950	150554950	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001091.2	+1	reviewed	p.I464M	0.946	122	0%	110	29.1%	106	46.2%	possibly_damaging(0.882)	tolerated(0.1)	deleterious(0.631)	HMMPfam_Cu_amine_oxid,superfamily_Amine oxidase catalytic domain
NOS3	4846	genome.wustl.edu	37	7	150707313	150707313	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000603.4	+1	reviewed	p.R875W	1.000	54	0%	73	24.7%	12	16.6%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_FAD_binding_1,superfamily_Riboflavin synthase domain-like
GALNT11	63917	genome.wustl.edu	37	7	151791591	151791591	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022087.2	+1	validated	p.K93N	0.352	80	0%	84	22.6%	8	37.5%	benign(0.038)	tolerated(0.48)	neutral(0.013)	NULL
CNPY1	285888	genome.wustl.edu	37	7	155301672	155301672	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001103176.1	-1	validated	p.A21T	0.995	171	0%	133	19.5%	0	-	probably_damaging(0.998)	tolerated(0.32)	deleterious(0.498)	NULL
RBM33	155435	genome.wustl.edu	37	7	155530776	155530776	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000392761	+1	known	p.R244Q	0.009	383	0%	516	15.5%	4	0%	-	-	-	NULL
NCAPG2	54892	genome.wustl.edu	37	7	158439169	158439169	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017760.5	-1	validated	p.K1054N	0.999	204	0%	234	30.8%	7	28.5%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	NULL
CSMD1	64478	genome.wustl.edu	37	8	2806851	2806851	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033225.5	-1	validated	p.D3459Y	1.000	406	0%	409	22.2%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
CSMD1	64478	genome.wustl.edu	37	8	3000022	3000022	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033225.5	-1	validated	p.S2070L	1.000	339	0%	277	24.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD1	64478	genome.wustl.edu	37	8	3076825	3076825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033225.5	-1	validated	p.R1543W	1.000	181	0%	184	16.3%	0	-	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
MTMR9	66036	genome.wustl.edu	37	8	11174277	11174277	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015458.3	+1	reviewed	p.C403	0.961	222	0%	231	24.7%	2	0%	-	-	-	superfamily_SSF52799
ZNF705F	790969	genome.wustl.edu	37	8	12216732	12216732	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000400078	+1	known	p.R244Q	0.003	631	0%	760	16.7%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
C8orf48	157773	genome.wustl.edu	37	8	13424846	13424846	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001007090.2	+1	validated	p.D116N	0.000	156	0%	182	15.9%	0	-	possibly_damaging(0.722)	tolerated(0.46)	neutral(0.274)	NULL
MTUS1	57509	genome.wustl.edu	37	8	17513425	17513425	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001001924.2	-1	reviewed	p.R1019W	0.971	561	0%	591	29.1%	14	28.5%	probably_damaging(0.985)	deleterious(0)	deleterious(0.877)	NULL
SH2D4A	63898	genome.wustl.edu	37	8	19218747	19218747	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022071.3	+1	validated	p.E210*	0.989	159	0%	182	26.4%	3	0%	-	-	-	NULL
ATP6V1B2	526	genome.wustl.edu	37	8	20070411	20070411	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001693.3	+1	reviewed	p.R308*	0.998	281	0%	262	31.7%	22	4.5%	-	-	-	HMMPfam_ATP-synt_ab,superfamily_P-loop containing nucleoside triphosphate hydrolases
SFTPC	6440	genome.wustl.edu	37	8	22020107	22020107	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003018.3	+1	reviewed	p.R21	0.401	302	0%	233	19.7%	0	-	-	-	-	HMMSmart_SM00019,HMMPfam_SP_C-Propep
POLR3D	661	genome.wustl.edu	37	8	22105449	22105449	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001722.2	+1	reviewed	p.R97*	0.174	229	0%	308	27.6%	5	0%	-	-	-	NULL
ADAM7	8756	genome.wustl.edu	37	8	24348347	24348347	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000380789	+1	known	p.C434	0.618	470	0%	601	31.3%	0	-	-	-	-	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
ADAM7	8756	genome.wustl.edu	37	8	24349452	24349452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000380789	+1	known	p.D465Y	0.903	118	0%	160	25.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
CDCA2	157313	genome.wustl.edu	37	8	25365000	25365000	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152562.2	+1	validated	p.E940*	0.168	176	0%	161	35.4%	3	33.3%	-	-	-	NULL
EBF2	64641	genome.wustl.edu	37	8	25890659	25890659	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022659.2	-1	validated	p.E165K	1.000	410	0%	431	13.2%	0	-	possibly_damaging(0.455)	deleterious(0.01)	deleterious(0.554)	PatternScan_COE
PTK2B	2185	genome.wustl.edu	37	8	27312066	27312066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004103.3	+1	reviewed	p.R918W	1.000	102	0%	92	28.3%	39	28.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Focal_AT,superfamily_FAT domain of focal adhesion kinase
ESCO2	157570	genome.wustl.edu	37	8	27634239	27634239	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001017420.2	+1	reviewed	p.K138N	0.455	83	0%	143	14.7%	0	-	possibly_damaging(0.917)	deleterious(0)	deleterious(0.812)	NULL
ESCO2	157570	genome.wustl.edu	37	8	27646473	27646473	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001017420.2	+1	reviewed	p.F414C	1.000	290	0%	295	17.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C8orf80	389643	genome.wustl.edu	37	8	27887830	27887830	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010906.1	-1	provisional	p.E672K	0.987	144	0%	116	29.3%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TEX15	56154	genome.wustl.edu	37	8	30700873	30700873	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031271.3	-1	validated	p.I1887	0.999	401	0%	448	21.7%	0	-	-	-	-	NULL
TEX15	56154	genome.wustl.edu	37	8	30702783	30702783	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031271.3	-1	validated	p.D1251N	0.003	228	0%	261	25.7%	0	-	benign(0.15)	tolerated(1)	neutral(0.013)	NULL
MAK16	84549	genome.wustl.edu	37	8	33346629	33346629	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032509.3	+1	validated	p.R122*	1.000	296	0%	393	12.5%	2	50%	-	-	-	HMMPfam_Mak16
DUSP26	78986	genome.wustl.edu	37	8	33451237	33451237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024025.1	-1	provisional	p.R84C	0.948	74	0%	68	30.9%	1	0%	possibly_damaging(0.473)	tolerated(0.1)	neutral(0.443)	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
WHSC1L1	54904	genome.wustl.edu	37	8	38156991	38156991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_023034.1	-1	reviewed	p.S910L	1.000	284	0%	389	20.1%	5	40%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	superfamily_FYVE/PHD zinc finger
IDO1	3620	genome.wustl.edu	37	8	39785685	39785685	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002164.4	+1	validated	p.S398F	0.000	114	0%	132	22.7%	2539	46.5%	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMPfam_IDO
IDO2	169355	genome.wustl.edu	37	8	39871214	39871214	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_194294.2	+1	validated	p.R297C	0.000	274	0%	236	17.8%	1	0%	benign(0.013)	tolerated(0.1)	neutral(0.287)	HMMPfam_IDO
VDAC3	7419	genome.wustl.edu	37	8	42259421	42259421	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001135694.1	+1	validated	p.E148K	1.000	199	0%	278	30.6%	76	40.7%	benign(0)	tolerated(0.85)	neutral(0.001)	HMMPfam_Porin_3
CHRNB3	1142	genome.wustl.edu	37	8	42585836	42585836	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000749.3	+1	validated	p.L117I	1.000	240	0%	194	19.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like
PRKDC	5591	genome.wustl.edu	37	8	48767884	48767884	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000314191	-1	known	p.M2219I	1.000	262	0.4%	293	24.6%	4	0%	possibly_damaging(0.845)	tolerated(0.21)	neutral(0.368)	superfamily_ARM repeat
PRKDC	5591	genome.wustl.edu	37	8	48845728	48845728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000314191	-1	known	p.S543Y	0.981	107	0%	129	24%	1	0%	possibly_damaging(0.801)	tolerated(1)	neutral(0.301)	superfamily_ARM repeat
RP1	6101	genome.wustl.edu	37	8	55538772	55538772	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006269.1	+1	reviewed	p.R777I	0.585	49	0%	44	13.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
TMEM68	137695	genome.wustl.edu	37	8	56652775	56652775	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152417.1	-1	provisional	p.T230	0.808	353	0%	385	28.8%	11	63.6%	benign(0.002)	tolerated(0.24)	neutral(0.037)	HMMSmart_PlsC
FAM110B	90362	genome.wustl.edu	37	8	59059824	59059824	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_147189.2	+1	validated	p.I345	0.995	99	0%	98	37.8%	3	0%	-	-	-	NULL
CYP7A1	1581	genome.wustl.edu	37	8	59409434	59409434	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000780.3	-1	reviewed	p.D213N	1.000	246	0%	320	23.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
TOX	9760	genome.wustl.edu	37	8	59851877	59851877	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014729.2	-1	reviewed	p.S132Y	0.998	253	0%	287	26.5%	5	0%	possibly_damaging(0.78)	deleterious(0)	deleterious(0.736)	NULL
ASPH	444	genome.wustl.edu	37	8	62577986	62577986	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020164.4	-1	reviewed	p.E168*	1.000	901	0%	911	11.6%	0	-	-	-	-	HMMPfam_Asp-B-Hydro_N
NKAIN3	286183	genome.wustl.edu	37	8	63831052	63831052	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173688.2	+1	provisional	p.S171F	1.000	738	0%	776	24.4%	0	-	benign(0)	tolerated(1)	-	HMMPfam_NKAIN
CYP7B1	9420	genome.wustl.edu	37	8	65537021	65537021	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004820.3	-1	reviewed	p.P66	0.001	259	0%	320	28.1%	1	0%	-	-	-	superfamily_Cytochrome P450
COPS5	10987	genome.wustl.edu	37	8	67970423	67970423	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006837.2	-1	reviewed	p.I134	0.985	112	0%	138	29.7%	47	53.1%	-	-	-	HMMPfam_Mov34,HMMSmart_JAB_MPN,superfamily_SSF102712
SLCO5A1	81796	genome.wustl.edu	37	8	70585235	70585235	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030958.2	-1	reviewed	p.E806K	1.000	264	0%	189	23.8%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77616524	77616524	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024721.4	+1	validated	p.E67D	1.000	79	0%	83	30.1%	0	-	possibly_damaging(0.69)	tolerated(0.38)	neutral(0.265)	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77617873	77617873	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024721.4	+1	validated	p.F517C	1.000	55	0%	67	20.9%	0	-	benign(0.345)	-	-	NULL
ZFHX4	79776	genome.wustl.edu	37	8	77767933	77767933	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024721.4	+1	validated	p.R2881W	0.980	169	0%	171	29.8%	0	-	probably_damaging(1)	-	-	superfamily_Homeodomain-like
ZC2HC1A	51101	genome.wustl.edu	37	8	79601519	79601519	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016010.2	+1	validated	p.N139H	1.000	241	0%	297	30.3%	5	20%	possibly_damaging(0.86)	tolerated(0.1)	deleterious(0.619)	NULL
DCAF4L2	138009	genome.wustl.edu	37	8	88885529	88885529	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152418.3	-1	validated	p.S224I	0.743	310	0%	345	28.4%	0	-	possibly_damaging(0.746)	tolerated(0.06)	deleterious(0.597)	superfamily_WD40_like
TMEM64	169200	genome.wustl.edu	37	8	91637996	91637996	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008495.3	-1	validated	p.S349Y	1.000	345	0%	371	17.8%	5	20%	benign(0.163)	deleterious(0)	neutral(0.459)	NULL
CDH17	1015	genome.wustl.edu	37	8	95182651	95182651	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001144663.1	-1	reviewed	p.F347C	1.000	253	0%	346	24.3%	0	-	probably_damaging(0.984)	tolerated(0.18)	deleterious(0.486)	HMMPfam_Cadherin,superfamily_Cadherin-like
PLEKHF2	79666	genome.wustl.edu	37	8	96167005	96167005	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024613.3	+1	validated	p.D245Y	1.000	80	0%	68	14.7%	10	30%	unknown(0)	deleterious(0.01)	-	NULL
C8orf47	203111	genome.wustl.edu	37	8	99101681	99101681	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173549.2	+1	validated	p.N146H	0.000	100	0%	144	22.2%	1	0%	possibly_damaging(0.634)	tolerated(0.13)	deleterious(0.475)	NULL
C8orf47	203111	genome.wustl.edu	37	8	99102024	99102024	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173549.2	+1	validated	p.R260I	0.000	130	0.8%	115	18.3%	0	-	benign(0)	tolerated(0.1)	neutral(0.286)	NULL
KCNS2	3788	genome.wustl.edu	37	8	99440838	99440838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020697.2	+1	provisional	p.D211N	1.000	160	0%	138	27.5%	0	-	benign(0.208)	deleterious(0.05)	neutral(0.365)	superfamily_Voltage-gated potassium channels
RGS22	26166	genome.wustl.edu	37	8	101117607	101117607	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015668.3	-1	validated	p.E17*	0.654	284	0%	311	28.3%	0	-	-	-	-	NULL
AZIN1	51582	genome.wustl.edu	37	8	103842139	103842139	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015878.4	-1	reviewed	p.P310	1.000	290	0%	338	23.1%	27	40.7%	-	-	-	HMMPfam_Orn_DAP_Arg_deC,superfamily_Racem_decarbox_C
FZD6	8323	genome.wustl.edu	37	8	104337581	104337581	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003506.3	+1	reviewed	p.R416Q	1.000	226	0%	284	14.8%	14	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Frizzled
ZFPM2	23414	genome.wustl.edu	37	8	106815297	106815297	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012082.3	+1	reviewed	p.S996Y	1.000	117	0%	168	30.4%	0	-	possibly_damaging(0.951)	deleterious(0.03)	deleterious(0.758)	NULL
CSMD3	114788	genome.wustl.edu	37	8	113349922	113349922	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198123.1	-1	validated	p.R2231*	1.000	175	0%	236	25.4%	0	-	-	-	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
CSMD3	114788	genome.wustl.edu	37	8	113651024	113651024	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198123.1	-1	validated	p.P1143S	0.998	287	0%	280	22.9%	0	-	benign(0.001)	tolerated(0.78)	neutral(0.001)	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113678546	113678546	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198123.1	-1	validated	p.E926*	1.000	276	0%	275	32.7%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CSMD3	114788	genome.wustl.edu	37	8	113702211	113702211	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198123.1	-1	validated	p.S681P	1.000	289	0%	365	23.8%	0	-	unknown(0)	tolerated(0.34)	-	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
COL14A1	7373	genome.wustl.edu	37	8	121210112	121210112	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021110.1	+1	validated	p.D219Y	1.000	341	0.3%	362	28.2%	2	0%	probably_damaging(0.993)	-	-	HMMPfam_VWA,HMMSmart_SM00327,superfamily_vWA-like
ZHX2	22882	genome.wustl.edu	37	8	123966025	123966025	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014943.3	+1	reviewed	p.C759G	0.000	166	0%	200	31%	10	20%	benign(0)	tolerated(0.52)	neutral(0.009)	NULL
ASAP1	50807	genome.wustl.edu	37	8	131067040	131067040	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018482.2	-1	validated	p.I1109	0.974	176	0%	280	27.9%	9	22.2%	-	-	-	HMMPfam_SH3_1,HMMSmart_SH3,superfamily_SH3
ADCY8	114	genome.wustl.edu	37	8	131812727	131812727	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001115.2	-1	reviewed	p.N1002S	1.000	325	0%	292	26%	0	-	possibly_damaging(0.751)	deleterious(0.05)	deleterious(0.621)	HMMPfam_Guanylate_cyc,HMMSmart_CYCc,superfamily_A/G_cyclase
TG	7038	genome.wustl.edu	37	8	133978816	133978816	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003235.4	+1	reviewed	p.E1854*	0.088	203	0%	184	28.3%	0	-	-	-	-	NULL
NDRG1	10397	genome.wustl.edu	37	8	134254285	134254285	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001135242.1	-1	reviewed	p.F308	1.000	162	0%	134	19.4%	39	23%	-	-	-	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
TRAPPC9	83696	genome.wustl.edu	37	8	141461033	141461033	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031466.5	-1	reviewed	p.R245I	1.000	78	0%	73	26%	10	60%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
ARC	23237	genome.wustl.edu	37	8	143694777	143694777	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015193.3	-1	validated	p.R286S	1.000	34	0%	24	16.7%	0	-	probably_damaging(0.979)	tolerated(0.05)	deleterious(0.767)	NULL
NAPRT1	93100	genome.wustl.edu	37	8	144659343	144659343	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145201.4	-1	validated	p.F191	0.919	33	0%	38	36.8%	101	33.6%	-	-	-	HMMPfam_NAPRTase,superfamily_Nicotinate/Quinolinate PRTase C-terminal domain-like
ZNF623	9831	genome.wustl.edu	37	8	144733142	144733142	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014789.3	+1	validated	p.R367I	0.201	207	0%	195	23.6%	2	50%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DOCK8	81704	genome.wustl.edu	37	9	439303	439303	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_203447.3	+1	reviewed	p.D1645G	0.997	130	0%	175	28.6%	3	0%	benign(0.308)	tolerated(0.3)	neutral(0.124)	NULL
DMRT2	10655	genome.wustl.edu	37	9	1053757	1053757	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181872.4	+1	reviewed	p.F187	0.491	246	0%	285	28.8%	0	-	-	-	-	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5968511	5968511	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001017969.2	-1	validated	p.R574C	0.409	281	0%	255	11%	3	0%	benign(0.006)	deleterious(0.03)	neutral(0.364)	NULL
KIAA2026	158358	genome.wustl.edu	37	9	5969363	5969363	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001017969.2	-1	validated	p.L290I	0.975	471	0%	490	28%	1	0%	probably_damaging(0.999)	tolerated(0.14)	deleterious(0.740)	NULL
PTPRD	5789	genome.wustl.edu	37	9	8331657	8331657	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002839.3	-1	reviewed	p.F1820C	1.000	339	0%	363	28.7%	1	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
BNC2	54796	genome.wustl.edu	37	9	16419547	16419547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017637.5	-1	validated	p.D914N	1.000	51	0%	49	36.7%	3	0%	possibly_damaging(0.707)	tolerated(0.3)	neutral(0.284)	NULL
CNTLN	54875	genome.wustl.edu	37	9	17394963	17394963	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017738.2	+1	validated	p.C837W	0.608	173	0%	170	25.9%	0	-	probably_damaging(0.977)	deleterious(0.02)	deleterious(0.802)	NULL
HAUS6	54801	genome.wustl.edu	37	9	19058322	19058322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017645.3	-1	provisional	p.D815Y	0.000	196	0%	189	22.2%	8	37.5%	possibly_damaging(0.775)	deleterious(0)	deleterious(0.733)	NULL
KIAA1797	54914	genome.wustl.edu	37	9	20907238	20907238	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017794.3	+1	validated	p.L905F	0.995	242	0%	271	26.6%	7	42.8%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_ARM-type_fold
KIAA1797	54914	genome.wustl.edu	37	9	20907239	20907239	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017794.3	+1	validated	p.Q906K	1.000	243	0%	276	26.4%	6	33.3%	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	superfamily_ARM-type_fold
ACO1	48	genome.wustl.edu	37	9	32419040	32419040	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002197.2	+1	reviewed	p.V221	0.999	155	0%	203	27.6%	9	44.4%	-	-	-	HMMPfam_Aconitase,superfamily_Aconitase iron-sulfur domain
ANKRD18B	441459	genome.wustl.edu	37	9	33548774	33548774	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001718334.2	+1	model	p.R729I	0.153	150	0%	127	18.1%	0	-	possibly_damaging(0.901)	deleterious(0.01)	deleterious(0.762)	NULL
UBAP2	55833	genome.wustl.edu	37	9	33943429	33943429	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018449.2	-1	reviewed	p.S568	0.110	267	0%	279	21.1%	4	0%	-	-	-	NULL
RPP25L	138716	genome.wustl.edu	37	9	34611185	34611185	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_148178.1	-1	validated	p.R37C	1.000	120	0%	117	26.5%	17	29.4%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Alba,superfamily_SSF82704
VCP	7415	genome.wustl.edu	37	9	35067942	35067942	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007126.3	-1	reviewed	p.R83Q	1.000	339	0%	378	25.1%	93	34.4%	probably_damaging(0.99)	tolerated(0.1)	deleterious(0.728)	HMMPfam_CDC48_N,superfamily_ADC-like
RNF38	152006	genome.wustl.edu	37	9	36353262	36353262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022781.4	-1	reviewed	p.Y326D	1.000	352	0%	509	19.1%	14	35.7%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZBTB5	9925	genome.wustl.edu	37	9	37441420	37441420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014872.2	-1	validated	p.R377W	0.993	94	0%	100	22%	3	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
FRMPD1	22844	genome.wustl.edu	37	9	37744410	37744410	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014907.2	+1	validated	p.E794G	0.015	67	0%	82	32.9%	0	-	benign(0.026)	deleterious(0.04)	neutral(0.350)	NULL
MCART1	92014	genome.wustl.edu	37	9	37888315	37888315	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033412.3	-1	validated	p.R78Q	1.000	311	0%	369	25.2%	5	0%	probably_damaging(1)	tolerated(0.37)	deleterious(0.519)	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
MCART1	92014	genome.wustl.edu	37	9	37888316	37888316	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033412.3	-1	validated	p.R78*	1.000	310	0%	373	23.9%	5	20%	-	-	-	superfamily_Mitoch_carrier,HMMPfam_Mito_carr
CNTNAP3	79937	genome.wustl.edu	37	9	39178312	39178312	+	Missense_Mutation	SNP	C	C	T	rs2260583		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033655.3	-1	reviewed	p.R195K	0.905	210	0%	221	26.7%	0	-	benign(0.008)	tolerated(0.13)	neutral(0.253)	superfamily_Concanavalin A-like lectins/glucanases
ZNF658	26149	genome.wustl.edu	37	9	40773107	40773107	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033160.5	-1	validated	p.F723C	0.461	579	0.2%	640	24.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TMEM2	23670	genome.wustl.edu	37	9	74345128	74345128	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013390.2	-1	validated	p.F605L	1.000	275	0%	328	18.9%	7	28.5%	possibly_damaging(0.862)	deleterious(0.01)	deleterious(0.739)	superfamily_Pectin lyase-like
C9orf85	138241	genome.wustl.edu	37	9	74526731	74526731	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182505.3	+1	validated	p.F27	0.969	173	0%	208	27.4%	8	62.5%	-	-	-	HMMPfam_DUF2039
C9orf57	138240	genome.wustl.edu	37	9	74667276	74667276	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001128618.1	-1	validated	p.R141I	0.018	386	0%	406	27.8%	0	-	possibly_damaging(0.681)	-	-	NULL
ANXA1	301	genome.wustl.edu	37	9	75774284	75774284	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000700.1	+1	reviewed	p.R72Q	1.000	289	0%	408	26.2%	270	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Annexin,PatternScan_ANNEXIN,HMMPfam_Annexin,HMMSmart_SM00335
PRUNE2	158471	genome.wustl.edu	37	9	79322725	79322725	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015225.2	-1	validated	p.L1489I	0.105	104	0%	106	10.4%	0	-	possibly_damaging(0.658)	tolerated(0.24)	neutral(0.270)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79897040	79897040	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033305.2	+1	reviewed	p.N990H	1.000	275	0%	301	22.9%	0	-	probably_damaging(0.992)	tolerated(0.06)	deleterious(0.770)	NULL
VPS13A	23230	genome.wustl.edu	37	9	79952307	79952307	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033305.2	+1	reviewed	p.L2078F	1.000	175	0%	161	26.7%	0	-	benign(0.103)	tolerated(0.23)	neutral(0.050)	NULL
GNAQ	2776	genome.wustl.edu	37	9	80430668	80430668	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002072.2	-1	provisional	p.R114*	1.000	333	0%	325	22.8%	12	25%	-	-	-	HMMPfam_G-alpha,superfamily_Transducin (alpha subunit) insertion domain,HMMSmart_SM00275,superfamily_P-loop containing nucleoside triphosphate hydrolases
CEP78	84131	genome.wustl.edu	37	9	80863686	80863686	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098802.1	+1	validated	p.W322C	1.000	392	0%	508	25.6%	3	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_SSF52047
CEP78	84131	genome.wustl.edu	37	9	80863771	80863771	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098802.1	+1	validated	p.K351Q	1.000	249	0%	308	26.6%	1	0%	probably_damaging(0.998)	deleterious(0.03)	deleterious(0.839)	NULL
CEP78	84131	genome.wustl.edu	37	9	80866888	80866888	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098802.1	+1	validated	p.A379	0.446	144	0%	140	16.4%	1	0%	-	-	-	NULL
TLE4	7091	genome.wustl.edu	37	9	82337464	82337464	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000376527	+1	known	p.P448S	1.000	261	0%	302	29.8%	4	0%	-	-	-	NULL
UBQLN1	29979	genome.wustl.edu	37	9	86322433	86322433	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013438.4	-1	reviewed	p.E54	1.000	31	0%	17	29.4%	14	28.5%	-	-	-	HMMPfam_ubiquitin,HMMSmart_SM00213,superfamily_Ubiquitin-like
DAPK1	1612	genome.wustl.edu	37	9	90315115	90315115	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004938.2	+1	reviewed	p.R945Q	1.000	381	0%	361	24.1%	2	0%	probably_damaging(0.97)	deleterious(0)	deleterious(0.857)	NULL
CTSL1	1514	genome.wustl.edu	37	9	90345958	90345958	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001912.4	+1	reviewed	p.K313T	0.942	272	0%	323	22%	127	22%	possibly_damaging(0.785)	tolerated(0.1)	deleterious(0.581)	PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_Pept_C1,superfamily_SSF54001
C9orf79	286234	genome.wustl.edu	37	9	90501165	90501165	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178828.4	+1	validated	p.S588Y	0.000	59	0%	59	20.3%	0	-	benign(0.215)	tolerated(0.15)	neutral(0.262)	NULL
AUH	549	genome.wustl.edu	37	9	94087606	94087606	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001698.2	-1	reviewed	p.D167N	1.000	353	0.3%	363	29.5%	23	34.7%	benign(0.043)	tolerated(0.26)	neutral(0.037)	HMMPfam_ECH,superfamily_ClpP/crotonase
NOL8	55035	genome.wustl.edu	37	9	95078323	95078323	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017948.5	-1	validated	p.L195*	0.994	460	0%	472	27.1%	4	25%	-	-	-	NULL
ENSG00000218940	0	genome.wustl.edu	37	9	95599057	95599057	+	Splice_Site	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000375504	+1	known	e7-2	0.771	43	0%	39	25.6%	0	-	-	-	-	-
ZNF484	83744	genome.wustl.edu	37	9	95608599	95608599	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031486.1	-1	provisional	p.K824Q	0.912	441	0%	469	26%	5	20%	possibly_damaging(0.919)	tolerated(0.21)	neutral(0.413)	NULL
ZNF484	83744	genome.wustl.edu	37	9	95609939	95609939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031486.1	-1	provisional	p.I377S	0.000	72	0%	39	35.9%	1	0%	benign(0.098)	deleterious(0.02)	neutral(0.391)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
BARX1	56033	genome.wustl.edu	37	9	96715187	96715187	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021570.3	-1	reviewed	p.T169M	1.000	126	0%	102	17.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like
PTCH1	5727	genome.wustl.edu	37	9	98209263	98209263	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000264.3	-1	reviewed	p.S1425	0.275	77	0%	97	27.8%	9	11.1%	unknown(0)	-	-	NULL
PTCH1	5727	genome.wustl.edu	37	9	98268780	98268780	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000264.3	-1	reviewed	p.F101L	1.000	167	0%	170	23.5%	2	0%	benign(0.003)	deleterious(0.05)	neutral(0.345)	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100128913	100128913	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020893.1	+1	predicted	p.E1363K	0.231	137	0%	181	11%	2	0%	probably_damaging(0.994)	deleterious(0.02)	deleterious(0.835)	NULL
C9orf174	100499483	genome.wustl.edu	37	9	100136874	100136874	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020893.1	+1	predicted	p.L1539	0.579	177	0%	207	29.5%	1	0%	-	-	-	NULL
TDRD7	23424	genome.wustl.edu	37	9	100222496	100222496	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014290.2	+1	validated	p.L298I	0.994	196	0.5%	209	28.7%	7	14.2%	benign(0.005)	tolerated(0.27)	neutral(0.034)	NULL
GABBR2	9568	genome.wustl.edu	37	9	101168368	101168368	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005458.7	-1	reviewed	p.F431C	1.000	385	0%	426	22.1%	0	-	benign(0.408)	deleterious(0.01)	deleterious(0.538)	HMMPfam_ANF_receptor,superfamily_SSF53822
NR4A3	8013	genome.wustl.edu	37	9	102595910	102595910	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000395096	+1	known	p.I291L	0.601	54	0%	23	17.4%	0	-	benign(0.005)	tolerated(1)	-	NULL
GRIN3A	116443	genome.wustl.edu	37	9	104432950	104432950	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133445.2	-1	reviewed	p.D582N	1.000	238	0.8%	227	26.4%	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53850
SMC2	10592	genome.wustl.edu	37	9	106901525	106901525	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001042550.1	+1	validated	p.Q1175K	1.000	312	0%	368	27.2%	4	25%	benign(0.001)	tolerated(0.52)	neutral(0.009)	NULL
OR13F1	138805	genome.wustl.edu	37	9	107267472	107267472	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004485.1	+1	provisional	p.F310C	0.279	57	0%	40	40%	0	-	possibly_damaging(0.592)	tolerated(0.13)	neutral(0.457)	superfamily_SSF81321
MUSK	4593	genome.wustl.edu	37	9	113563224	113563224	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005592.3	+1	reviewed	p.L856	1.000	52	0%	38	28.9%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
ORM1	5004	genome.wustl.edu	37	9	117086082	117086082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000607.2	+1	reviewed	p.T85I	0.334	447	0%	472	10.2%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_Lipocalin,superfamily_Calycin
TNC	3371	genome.wustl.edu	37	9	117853104	117853104	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002160.2	-1	validated	p.S65L	1.000	169	0%	168	24.4%	8	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DBC1	1620	genome.wustl.edu	37	9	121929911	121929911	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014618.2	-1	validated	p.F579	0.707	48	0%	34	38.2%	0	-	-	-	-	NULL
MEGF9	1955	genome.wustl.edu	37	9	123367864	123367864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080497.1	-1	provisional	p.L508F	1.000	216	0%	265	19.6%	5	20%	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	NULL
LOC729012	729012	genome.wustl.edu	37	9	125524322	125524322	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001130187.3	+1	model	p.T59N	0.569	436	0%	402	22.1%	0	-	possibly_damaging(0.527)	deleterious(0.03)	deleterious(0.542)	NULL
ZBTB26	57684	genome.wustl.edu	37	9	125681488	125681488	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020924.2	-1	provisional	p.L242	0.712	366	0%	507	20.7%	4	0%	-	-	-	NULL
RABGAP1	23637	genome.wustl.edu	37	9	125861826	125861826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012197.3	+1	validated	p.R963W	1.000	378	0%	403	20.1%	18	50%	probably_damaging(0.996)	deleterious(0.03)	deleterious(0.826)	NULL
STRBP	55342	genome.wustl.edu	37	9	125910127	125910127	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018387.4	-1	validated	p.K356N	1.000	455	0%	558	19.2%	13	53.8%	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	NULL
STRBP	55342	genome.wustl.edu	37	9	125920691	125920691	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018387.4	-1	validated	p.D285Y	1.000	259	0%	311	25.7%	30	30%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DZF,HMMSmart_SM00572
GAPVD1	26130	genome.wustl.edu	37	9	128116970	128116970	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015635.2	+1	validated	p.R1230*	1.000	161	0%	151	25.2%	4	0%	-	-	-	NULL
CERCAM	51148	genome.wustl.edu	37	9	131186871	131186871	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016174.4	+1	validated	p.F248	0.998	119	0%	133	27.8%	12	8.3%	-	-	-	NULL
SPTAN1	6709	genome.wustl.edu	37	9	131394744	131394744	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001130438.1	+1	validated	p.E2332*	1.000	112	0%	125	24%	89	1.1%	-	-	-	HMMSmart_EFh,HMMPfam_efhand,superfamily_SSF47473
SET	6418	genome.wustl.edu	37	9	131455237	131455237	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001122821.1	+1	validated	p.E170K	1.000	290	0%	261	15.7%	219	36%	benign(0.002)	tolerated(0.28)	neutral(0.032)	HMMPfam_NAP
ENDOG	2021	genome.wustl.edu	37	9	131584797	131584797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004435.2	+1	reviewed	p.E268K	1.000	107	0.9%	109	22.9%	63	53.9%	benign(0.423)	deleterious(0.04)	deleterious(0.486)	HMMPfam_Endonuclease_NS,HMMSmart_SM00477,superfamily_His-Me finger endonucleases
PRRX2	51450	genome.wustl.edu	37	9	132482894	132482894	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016307.3	+1	reviewed	p.R156H	0.723	71	0%	60	26.7%	11	18.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1
GPR107	57720	genome.wustl.edu	37	9	132854651	132854651	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001136557.1	+1	validated	p.R285Q	1.000	428	0%	394	31.5%	6	16.6%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	HMMPfam_Lung_7-TM_R
POMT1	10585	genome.wustl.edu	37	9	134381508	134381508	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007171.3	+1	reviewed	p.E44K	1.000	369	0%	326	22.4%	3	33.3%	possibly_damaging(0.911)	deleterious(0)	deleterious(0.807)	HMMPfam_PMT
UCK1	83549	genome.wustl.edu	37	9	134404901	134404901	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031432.2	-1	validated	p.P113	0.001	405	0%	445	30.6%	19	21%	-	-	-	HMMPfam_PRK,superfamily_SSF52540
RAPGEF1	2889	genome.wustl.edu	37	9	134454984	134454984	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198679.1	-1	reviewed	p.F1063S	1.000	393	0%	432	27.1%	29	10.3%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMSmart_RasGEF,superfamily_Ras_GEF
GTF3C4	9329	genome.wustl.edu	37	9	135555034	135555034	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012204.2	+1	validated	p.I676	0.873	144	0%	200	20%	3	33.3%	-	-	-	NULL
RALGDS	5900	genome.wustl.edu	37	9	135982591	135982591	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006266.2	-1	validated	p.A432T	1.000	98	0%	85	23.5%	19	26.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_RasGEF,HMMSmart_SM00147,superfamily_Ras GEF
SURF4	6836	genome.wustl.edu	37	9	136230266	136230266	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000485435	-1	known	p.P185S	0.963	81	0%	52	23.1%	128	29.6%	unknown(0)	-	-	NULL
FCN1	2219	genome.wustl.edu	37	9	137801436	137801436	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000371807	-1	known	p.Q221H	0.338	11	0.000	8	0.500	0	-	unknown(0)	deleterious(0)	-	HMMSmart_SM00186
PITRM1	10531	genome.wustl.edu	37	10	3202454	3202454	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014889.2	-1	validated	p.K287R	1.000	323	0%	366	26%	11	45.4%	benign(0.252)	tolerated(0.38)	neutral(0.043)	HMMPfam_Peptidase_M16_C,superfamily_LuxS/MPP-like metallohydrolase
GDI2	2665	genome.wustl.edu	37	10	5828009	5828009	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001494.3	-1	reviewed	p.L131	1.000	241	0%	237	29.1%	65	41.5%	-	-	-	HMMPfam_GDI,superfamily_FAD/NAD(P)-binding domain
ITIH5	80760	genome.wustl.edu	37	10	7658002	7658002	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000461751	-1	known	p.E72*	1.000	322	0%	455	13%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C10orf47	254427	genome.wustl.edu	37	10	11894094	11894094	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153256.3	+1	validated	p.R6	0.041	101	0%	98	33.7%	9	44.4%	-	-	-	NULL
CAMK1D	57118	genome.wustl.edu	37	10	12708747	12708747	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153498.2	+1	reviewed	p.E79D	1.000	468	0%	527	22.8%	4	0%	benign(0)	deleterious(0.02)	neutral(0.383)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
OPTN	10133	genome.wustl.edu	37	10	13160956	13160956	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008211.1	+1	reviewed	p.T232I	1.000	197	0%	235	29.8%	80	20%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	NULL
PHYH	5264	genome.wustl.edu	37	10	13337568	13337568	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006214.3	-1	reviewed	p.R58I	1.000	256	0%	351	19.7%	25	44%	possibly_damaging(0.595)	deleterious(0.03)	deleterious(0.571)	NULL
CUBN	8029	genome.wustl.edu	37	10	17032429	17032429	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001081.3	-1	reviewed	p.I1418	1.000	204	0%	245	24.1%	0	-	-	-	-	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
CUBN	8029	genome.wustl.edu	37	10	17153024	17153024	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001081.3	-1	reviewed	p.C303	0.329	238	0.4%	268	19.4%	0	-	-	-	-	HMMSmart_SM00179,HMMSmart_SM00181,HMMPfam_EGF_CA,superfamily_EGF/Laminin
SLC39A12	221074	genome.wustl.edu	37	10	18242289	18242289	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145195.1	+1	validated	p.K28	0.000	231	0%	270	32.6%	0	-	-	-	-	NULL
PLXDC2	84898	genome.wustl.edu	37	10	20506412	20506412	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032812.7	+1	provisional	p.T394A	0.998	253	0%	234	23.5%	8	0%	benign(0.007)	tolerated(0.55)	neutral(0.007)	NULL
NEBL	10529	genome.wustl.edu	37	10	21129775	21129775	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006393.2	-1	reviewed	p.E411*	1.000	389	0%	387	23.8%	0	-	-	-	-	HMMPfam_Nebulin,HMMSmart_SM00227
C10orf140	387640	genome.wustl.edu	37	10	21806483	21806483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207371.3	-1	validated	p.A90V	1.000	93	0%	93	20.4%	0	-	unknown(0)	deleterious(0.01)	-	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain
MLLT10	8028	genome.wustl.edu	37	10	21959445	21959445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004641.2	+1	validated	p.R288L	1.000	209	0.5%	250	19.6%	6	33.3%	benign(0.11)	deleterious(0)	neutral(0.453)	NULL
ARHGAP21	57584	genome.wustl.edu	37	10	24874894	24874894	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020824.3	-1	validated	p.F1442V	0.142	360	0%	349	30.4%	7	28.5%	benign(0.017)	tolerated(0.06)	neutral(0.323)	NULL
GPR158	57512	genome.wustl.edu	37	10	25464793	25464793	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020752.2	+1	validated	p.Q148H	1.000	40	0%	55	34.5%	0	-	benign(0.003)	tolerated(0.44)	neutral(0.013)	NULL
GPR158	57512	genome.wustl.edu	37	10	25755615	25755615	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020752.2	+1	validated	p.T457	0.980	239	0%	263	22.8%	0	-	-	-	-	HMMPfam_7tm_3
GPR158	57512	genome.wustl.edu	37	10	25885599	25885599	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020752.2	+1	validated	p.D676N	1.000	230	0%	304	22%	0	-	probably_damaging(0.997)	deleterious(0.04)	deleterious(0.815)	NULL
MYO3A	53904	genome.wustl.edu	37	10	26417340	26417340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017433.4	+1	reviewed	p.S712I	1.000	252	0%	280	26.1%	0	-	benign(0.119)	deleterious(0.03)	neutral(0.374)	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540
MASTL	84930	genome.wustl.edu	37	10	27462069	27462069	+	Missense_Mutation	SNP	C	C	T	rs181913798	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032844.3	+1	reviewed	p.S715L	0.841	198	0%	219	22.4%	5	20%	benign(0.028)	tolerated(0.45)	neutral(0.013)	superfamily_Kinase_like
PTCHD3	374308	genome.wustl.edu	37	10	27692272	27692272	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001034842.3	-1	validated	p.R409Q	0.019	173	0%	186	25.8%	0	-	probably_damaging(0.991)	deleterious(0.01)	deleterious(0.850)	HMMPfam_Patched,superfamily_Multidrug efflux transporter AcrB transmembrane domain
NRP1	8829	genome.wustl.edu	37	10	33471654	33471654	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003873.5	-1	validated	p.K818N	1.000	298	0%	253	27.3%	13	0%	benign(0.273)	tolerated(0.46)	neutral(0.041)	NULL
ZNF33A	7581	genome.wustl.edu	37	10	38343889	38343889	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006954.1	+1	validated	p.D279E	0.152	196	0%	158	26.6%	5	40%	benign(0.026)	tolerated(1)	neutral(0.001)	NULL
ZNF33A	7581	genome.wustl.edu	37	10	38345239	38345239	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006954.1	+1	validated	p.I729	0.774	406	0%	454	23.1%	6	16.6%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SYT15	83849	genome.wustl.edu	37	10	46967544	46967544	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031912.3	-1	reviewed	p.S178L	0.783	101	0%	88	12.5%	0	-	-	-	-	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
PPYR1	5540	genome.wustl.edu	37	10	47087175	47087175	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005972.4	+1	validated	p.S131L	1.000	424	0%	355	11.3%	0	-	probably_damaging(0.991)	deleterious(0)	deleterious(0.889)	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like
ANXA8L2	244	genome.wustl.edu	37	10	47753922	47753922	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001630.2	+1	reviewed	p.E98K	0.998	713	0.3%	696	8.9%	0	-	possibly_damaging(0.838)	tolerated(0.1)	deleterious(0.607)	superfamily_Annexin,HMMPfam_Annexin
FAM170B	170370	genome.wustl.edu	37	10	50339819	50339819	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000311787	-1	known	p.F231L	1.000	70	0%	66	27.3%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ASAH2	56624	genome.wustl.edu	37	10	52008306	52008306	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019893.2	-1	validated	p.A22V	0.822	286	0%	372	28.8%	0	-	benign(0.001)	tolerated(1)	-	NULL
CSTF2T	23283	genome.wustl.edu	37	10	53459026	53459026	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015235.2	-1	validated	p.E95A	1.000	191	0%	134	24.6%	11	36.3%	benign(0.243)	deleterious(0.01)	neutral(0.430)	superfamily_RNA-binding domain RBD
IPMK	253430	genome.wustl.edu	37	10	59986889	59986889	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152230.3	-1	provisional	p.A96	1.000	294	0%	352	20.2%	1	0%	-	-	-	HMMPfam_IPK,superfamily_SSF56104
SLC16A9	220963	genome.wustl.edu	37	10	61424015	61424015	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_194298.2	-1	validated	p.R136G	0.999	195	0%	256	30.5%	5	20%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
ANK3	288	genome.wustl.edu	37	10	61815794	61815794	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020987.2	-1	reviewed	p.S4229	1.000	162	0.6%	186	31.2%	13	38.4%	-	-	-	NULL
ARID5B	84159	genome.wustl.edu	37	10	63810648	63810648	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032199.2	+1	validated	p.A245	1.000	243	0%	246	24%	4	25%	-	-	-	NULL
ARID5B	84159	genome.wustl.edu	37	10	63852134	63852134	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032199.2	+1	validated	p.S971L	0.001	93	0%	73	35.6%	6	33.3%	benign(0)	tolerated(0.2)	neutral(0.049)	NULL
DNA2	1763	genome.wustl.edu	37	10	70225446	70225446	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080449.1	-1	provisional	p.E275*	1.000	285	0%	269	21.2%	1	0%	-	-	-	HMMPfam_Dna2
CCAR1	55749	genome.wustl.edu	37	10	70516049	70516049	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018237.2	+1	validated	p.R549C	1.000	338	0%	328	18.6%	28	28.5%	unknown(0)	tolerated(0.06)	-	NULL
ENSG00000247499	0	genome.wustl.edu	37	10	70546485	70546485	+	RNA	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000501160	-1	known	NULL	0.001	118	0%	135	28.1%	1	0%	-	-	-	-
KIAA1279	26128	genome.wustl.edu	37	10	70775629	70775629	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015634.3	+1	reviewed	p.E441D	1.000	188	0%	226	26.5%	21	52.3%	possibly_damaging(0.672)	tolerated(0.28)	neutral(0.269)	NULL
C10orf27	219793	genome.wustl.edu	37	10	72541687	72541687	+	Silent	SNP	G	G	A	rs188354458	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152710.2	-1	validated	p.F49	0.002	157	0.6%	162	16.7%	0	-	-	-	-	NULL
LDB3	11155	genome.wustl.edu	37	10	88451697	88451697	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007078.2	+1	reviewed	p.V245A	1.000	113	0%	136	27.9%	1	0%	possibly_damaging(0.662)	deleterious(0.01)	deleterious(0.640)	NULL
MMRN2	79812	genome.wustl.edu	37	10	88703547	88703547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024756.2	-1	validated	p.D332N	0.012	130	0%	103	21.4%	15	0%	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	NULL
PTEN	5728	genome.wustl.edu	37	10	89624245	89624245	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000371953	+1	known	p.E7*	1.000	384	0%	391	20.5%	35	45.7%	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89711899	89711899	+	Missense_Mutation	SNP	C	C	T	rs121913293		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000371953	+1	known	p.R173C	1.000	360	0%	397	24.2%	32	37.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00404,superfamily_(Phosphotyrosine protein) phosphatases II
PTEN	5728	genome.wustl.edu	37	10	89720870	89720870	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000371953	+1	known	p.F341V	1.000	76	0%	113	31.9%	31	29%	probably_damaging(0.995)	deleterious(0.02)	deleterious(0.841)	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
KIF20B	9585	genome.wustl.edu	37	10	91468936	91468936	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016195.2	+1	validated	p.E54K	0.999	96	0%	114	32.5%	0	-	benign(0.066)	tolerated(0.38)	neutral(0.022)	superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF20B	9585	genome.wustl.edu	37	10	91528551	91528551	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016195.2	+1	validated	p.I1676M	0.003	328	0%	358	25.7%	3	100%	benign(0.163)	deleterious(0)	neutral(0.459)	NULL
KIF11	3832	genome.wustl.edu	37	10	94408130	94408130	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004523.3	+1	reviewed	p.K903N	0.098	155	0%	200	30%	11	54.5%	possibly_damaging(0.926)	tolerated(0.11)	deleterious(0.646)	NULL
NOC3L	64318	genome.wustl.edu	37	10	96099494	96099494	+	Splice_Site	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022451.9	-1	provisional	e17+2	1.000	94	0%	118	24.6%	0	-	-	-	-	-
CYP2C8	1558	genome.wustl.edu	37	10	96798705	96798705	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000770.3	-1	reviewed	p.D414Y	1.000	416	0%	536	25.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_p450,superfamily_Cytochrome_P450
PDLIM1	9124	genome.wustl.edu	37	10	97007027	97007027	+	Silent	SNP	C	C	T	rs141682059	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020992.2	-1	provisional	p.P210	0.000	261	0.4%	322	23.9%	96	30.2%	-	-	-	NULL
ENSG00000200728	0	genome.wustl.edu	37	10	97872509	97872509	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000363858	+1	novel	NULL	0.051	153	0%	182	33%	0	-	-	-	-	-
TLL2	7093	genome.wustl.edu	37	10	98180773	98180773	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012465.3	-1	validated	p.S288F	1.000	329	0%	310	16.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Astacin,HMMSmart_ZnMc,superfamily_SSF55486
ANKRD2	26287	genome.wustl.edu	37	10	99340708	99340708	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020349.2	+1	validated	p.R212W	1.000	82	0%	111	27.9%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_Ank,superfamily_Ankyrin repeat
HOGA1	112817	genome.wustl.edu	37	10	99371299	99371299	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138413.3	+1	validated	p.K289N	1.000	164	0%	174	20.1%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHDPS,superfamily_Aldolase
HPS1	3257	genome.wustl.edu	37	10	100182169	100182169	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000195.2	-1	reviewed	p.S567L	0.818	107	0%	85	28.2%	48	37.5%	probably_damaging(0.992)	deleterious(0.04)	deleterious(0.796)	NULL
GOT1	2805	genome.wustl.edu	37	10	101180382	101180382	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002079.2	-1	reviewed	p.R100Q	1.000	126	0.8%	93	30.1%	72	48.6%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
ENTPD7	57089	genome.wustl.edu	37	10	101460788	101460788	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020354.3	+1	validated	p.S465*	1.000	378	0%	467	25.7%	4	25%	-	-	-	HMMPfam_GDA1_CD39
CPN1	1369	genome.wustl.edu	37	10	101835823	101835823	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001308.2	-1	reviewed	p.E89K	1.000	83	0%	66	15.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_1,superfamily_Zn-dependent exopeptidases
SCD	6319	genome.wustl.edu	37	10	102107823	102107823	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005063.4	+1	validated	p.I10	0.996	445	0%	485	22.9%	25	40%	-	-	-	NULL
WNT8B	7479	genome.wustl.edu	37	10	102241717	102241717	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003393.3	+1	reviewed	p.G139E	1.000	195	0%	230	22.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_wnt,HMMSmart_WNT1
MGEA5	10724	genome.wustl.edu	37	10	103558652	103558652	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012215.3	-1	validated	p.R586*	1.000	340	0%	369	21.1%	14	0%	-	-	-	NULL
C10orf76	79591	genome.wustl.edu	37	10	103753315	103753315	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024541.2	-1	validated	p.R419*	1.000	333	0%	411	26%	6	16.6%	-	-	-	NULL
PSD	5662	genome.wustl.edu	37	10	104164699	104164699	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002779.3	-1	provisional	p.F837L	1.000	54	0%	65	33.8%	6	0%	possibly_damaging(0.533)	tolerated(0.18)	neutral(0.236)	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like
PSD	5662	genome.wustl.edu	37	10	104172186	104172186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002779.3	-1	provisional	p.R567Q	1.000	113	0%	70	28.6%	0	-	possibly_damaging(0.501)	tolerated(0.17)	neutral(0.227)	HMMPfam_Sec7,HMMSmart_SM00222,superfamily_Sec7 domain
LOC729020	729020	genome.wustl.edu	37	10	105006072	105006072	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001143909.1	+1	provisional	p.D107Y	1.000	437	0%	358	43.9%	2	0%	-	-	-	HMMPfam_Ribul_P_3_epim,superfamily_RibP_bind_barrel
COL17A1	1308	genome.wustl.edu	37	10	105796265	105796265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000494.3	-1	reviewed	p.L1135I	0.550	54	0%	73	45.2%	4	100%	possibly_damaging(0.839)	tolerated(0.49)	neutral(0.331)	NULL
CCDC147	159686	genome.wustl.edu	37	10	106128216	106128216	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008723.1	+1	validated	p.Q276H	1.000	164	0%	271	46.1%	0	-	possibly_damaging(0.859)	tolerated(0.12)	deleterious(0.593)	NULL
GPAM	57678	genome.wustl.edu	37	10	113932065	113932065	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020918.4	-1	validated	p.P223	1.000	285	0%	407	49.6%	1	100%	-	-	-	HMMPfam_Acyltransferase,superfamily_SSF69593
DCLRE1A	9937	genome.wustl.edu	37	10	115609499	115609499	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014881.3	-1	provisional	p.Q455H	0.000	231	0%	219	50.2%	1	100%	benign(0.005)	tolerated(0.22)	neutral(0.042)	NULL
FAM160B1	57700	genome.wustl.edu	37	10	116606338	116606338	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020940.3	+1	validated	p.R473	0.956	188	0%	276	42%	2	100%	-	-	-	HMMPfam_RAI16-like
FAM204A	63877	genome.wustl.edu	37	10	120095144	120095144	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134672.1	-1	validated	p.E82*	1.000	389	0%	282	19.1%	18	5.5%	-	-	-	NULL
TIAL1	7073	genome.wustl.edu	37	10	121338333	121338333	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001033925.1	-1	reviewed	p.A171V	1.000	211	0%	243	49.8%	26	73%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928
WDR11	55717	genome.wustl.edu	37	10	122668142	122668142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018117.11	+1	reviewed	p.L1198F	0.755	319	0%	324	47.8%	37	83.7%	benign(0)	tolerated(0.65)	neutral(0.003)	NULL
C10orf120	399814	genome.wustl.edu	37	10	124457438	124457438	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010912.1	-1	predicted	p.E273	0.002	462	0%	463	46%	0	-	-	-	-	NULL
MKI67	4288	genome.wustl.edu	37	10	129904805	129904805	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002417.4	-1	reviewed	p.E1767*	0.000	900	0.2%	855	47.6%	3	0%	-	-	-	HMMPfam_K167R
MKI67	4288	genome.wustl.edu	37	10	129905984	129905984	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002417.4	-1	reviewed	p.E1374K	0.000	426	0%	428	47.7%	0	-	benign(0)	tolerated(0.86)	neutral(0.001)	HMMPfam_K167R
STK32C	282974	genome.wustl.edu	37	10	134121143	134121143	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173575.2	-1	reviewed	p.K65N	1.000	3	0.000	9	0.889	1	0%	benign(0.044)	deleterious(0.02)	neutral(0.386)	NULL
MUC5B	727897	genome.wustl.edu	37	11	1278499	1278499	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002458.1	+1	validated	p.F5426L	0.002	253	0%	201	26.9%	176	46.5%	unknown(0)	-	-	HMMSmart_SM00214,HMMSmart_SM00215,superfamily_PMP inhibitors
C11orf21	29125	genome.wustl.edu	37	11	2320861	2320861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142946.1	-1	predicted	p.A121V	0.001	289	0%	298	14.1%	0	-	possibly_damaging(0.86)	-	-	NULL
NUP98	4928	genome.wustl.edu	37	11	3704669	3704669	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016320.4	-1	reviewed	p.I1560T	0.035	106	0%	122	19.7%	20	50%	benign(0)	tolerated(0.49)	neutral(0.011)	NULL
NUP98	4928	genome.wustl.edu	37	11	3712617	3712617	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016320.4	-1	reviewed	p.R1472*	0.954	277	0%	258	24%	18	5.5%	-	-	-	NULL
OR51G2	81282	genome.wustl.edu	37	11	4936381	4936381	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005238.1	-1	provisional	p.F171L	0.108	175	0%	216	25.5%	0	-	possibly_damaging(0.8)	tolerated(1)	neutral(0.301)	HMMPfam_7tm_1,superfamily_SSF81321
OR51A4	401666	genome.wustl.edu	37	11	4967856	4967856	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005329.1	-1	provisional	p.L159I	0.002	235	0%	232	11.6%	0	-	benign(0.09)	tolerated(0.28)	neutral(0.038)	HMMPfam_7tm_1,superfamily_SSF81321
OR52J3	119679	genome.wustl.edu	37	11	5068358	5068358	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001001916.2	+1	validated	p.G201	0.015	674	0%	838	24.1%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52E2	119678	genome.wustl.edu	37	11	5080340	5080340	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005164.2	-1	validated	p.N173S	0.684	162	0%	322	19.6%	0	-	benign(0)	tolerated(0.88)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR52A4	390053	genome.wustl.edu	37	11	5142014	5142014	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005222.2	-1	validated	p.F265L	0.001	106	0%	154	31.2%	0	-	unknown(0)	tolerated(0.22)	-	HMMPfam_7tm_1,superfamily_SSF81321
OR52A5	390054	genome.wustl.edu	37	11	5152940	5152940	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005160.2	-1	validated	p.F311L	0.001	195	0%	294	20.1%	0	-	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_SSF81321
OR52L2P	79274	genome.wustl.edu	37	11	6078962	6078962	+	Nonsense_Mutation	SNP	G	G	A	rs187496329	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000316540	-1	known	p.R182*	0.000	102	0%	108	15.7%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
DCHS1	8642	genome.wustl.edu	37	11	6652904	6652906	+	In_Frame_Del	DEL	GTC	GTC	-	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	GTC	GTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003737.2	-1	reviewed	p.D1206in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
SCUBE2	57758	genome.wustl.edu	37	11	9055287	9055287	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020974.2	-1	validated	p.P658S	1.000	176	0%	207	24.6%	1	0%	possibly_damaging(0.741)	deleterious(0.02)	deleterious(0.655)	superfamily_Growth factor receptor domain,HMMPfam_GCC2_GCC3
SCUBE2	57758	genome.wustl.edu	37	11	9088342	9088342	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020974.2	-1	validated	p.N221T	1.000	113	0.9%	101	26.7%	1	0%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	HMMSmart_SM00179,HMMSmart_SM00181,superfamily_EGF/Laminin
USP47	55031	genome.wustl.edu	37	11	11941934	11941934	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017944.3	+1	validated	p.K303E	1.000	245	0%	256	21.9%	7	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_UCH,superfamily_Cysteine proteinases
USP47	55031	genome.wustl.edu	37	11	11951046	11951046	+	Nonsense_Mutation	SNP	T	T	G	rs190706361	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017944.3	+1	validated	p.Y416*	0.996	521	0%	642	27.9%	4	0%	-	-	-	HMMPfam_UCH,PatternScan_UCH_2_2,superfamily_Cysteine proteinases
SERGEF	26297	genome.wustl.edu	37	11	17899774	17899774	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012139.2	-1	validated	p.E343	1.000	70	0%	93	23.7%	20	35%	benign(0)	-	-	superfamily_RCC1/BLIP-II
SAA3P	6290	genome.wustl.edu	37	11	18134173	18134173	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000278207	-1	known	p.E119D	0.000	112	0%	110	27.3%	0	-	-	-	-	HMMPfam_SAA,HMMSmart_SM00197
TSG101	7251	genome.wustl.edu	37	11	18503371	18503371	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006292.2	-1	reviewed	p.E297*	1.000	353	0%	416	30.5%	47	8.5%	-	-	-	NULL
UEVLD	55293	genome.wustl.edu	37	11	18591900	18591900	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001040697.1	-1	validated	p.R73H	0.874	245	0%	326	23%	3	33.3%	probably_damaging(0.996)	tolerated(0.13)	deleterious(0.714)	HMMPfam_UEV,superfamily_UBC-like
SPTY2D1	144108	genome.wustl.edu	37	11	18655792	18655792	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_194285.2	-1	validated	p.E5*	1.000	204	0.5%	145	27.6%	4	25%	-	-	-	NULL
PTPN5	84867	genome.wustl.edu	37	11	18751094	18751094	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006906.1	-1	validated	p.G504S	0.997	47	0%	35	22.9%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_SM00194,HMMSmart_SM00404,PatternScan_TYR_PHOSPHATASE_1,superfamily_(Phosphotyrosine protein) phosphatases II
ZDHHC13	54503	genome.wustl.edu	37	11	19180550	19180550	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019028.2	+1	validated	p.F357L	1.000	859	0%	853	23.2%	15	20%	benign(0.078)	tolerated(0.13)	neutral(0.258)	NULL
E2F8	79733	genome.wustl.edu	37	11	19253831	19253831	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024680.2	-1	validated	p.R339Q	1.000	522	0%	585	24.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_E2F_TDP,superfamily_""Winged helix"" DNA-binding domain"
NAV2	89797	genome.wustl.edu	37	11	19914060	19914060	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182964.5	+1	validated	p.R284Q	0.997	168	0%	247	31.2%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SLC6A5	9152	genome.wustl.edu	37	11	20628617	20628617	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004211.3	+1	reviewed	p.E248D	1.000	244	0%	213	27.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SNF
ANO5	203859	genome.wustl.edu	37	11	22283790	22283790	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_213599.2	+1	reviewed	p.F582	0.959	413	0%	459	25.1%	0	-	-	-	-	NULL
SLC5A12	159963	genome.wustl.edu	37	11	26734240	26734240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178498.3	-1	validated	p.R118L	1.000	340	0%	433	25.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_SSF
PAX6	5080	genome.wustl.edu	37	11	31822324	31822324	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001604.4	-1	reviewed	p.L160	1.000	388	0%	337	24.6%	1	100%	-	-	-	NULL
CCDC73	493860	genome.wustl.edu	37	11	32635332	32635332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008391.2	-1	validated	p.E844D	1.000	214	0%	289	27.7%	0	-	probably_damaging(0.973)	tolerated(0.53)	neutral(0.422)	NULL
CCDC73	493860	genome.wustl.edu	37	11	32720835	32720835	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008391.2	-1	validated	p.E118*	1.000	746	0%	817	22%	0	-	-	-	-	NULL
DEPDC7	91614	genome.wustl.edu	37	11	33053039	33053039	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001077242.1	+1	validated	p.E300*	0.978	245	0.4%	276	19.9%	1	0%	-	-	-	NULL
C11orf41	25758	genome.wustl.edu	37	11	33573676	33573676	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012194.1	+1	validated	p.A957	0.001	130	0%	145	24.1%	0	-	-	-	-	NULL
CAPRIN1	4076	genome.wustl.edu	37	11	34120908	34120908	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005898.4	+1	validated	p.V708	1.000	154	0%	164	28%	95	43.1%	-	-	-	NULL
NAT10	55226	genome.wustl.edu	37	11	34165048	34165048	+	Missense_Mutation	SNP	C	C	T	rs183448235	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024662.2	+1	validated	p.P981L	1.000	271	0%	322	23.9%	20	15%	benign(0)	tolerated(0.28)	neutral(0.032)	NULL
DDB2	1643	genome.wustl.edu	37	11	47254483	47254483	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000107.2	+1	reviewed	p.R192Q	0.257	178	0%	236	22.5%	11	27.2%	possibly_damaging(0.715)	tolerated(0.75)	neutral(0.261)	HMMSmart_SM00320,superfamily_WD40 repeat-like
PSMC3	5702	genome.wustl.edu	37	11	47441877	47441877	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002804.4	-1	reviewed	p.P355	0.009	148	0%	111	30.6%	145	33.7%	-	-	-	HMMSmart_SM00382,HMMPfam_AAA,superfamily_P-loop containing nucleoside triphosphate hydrolases
NUP160	23279	genome.wustl.edu	37	11	47830029	47830029	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015231.1	-1	validated	p.R765Q	1.000	200	0.5%	313	29.1%	8	12.5%	possibly_damaging(0.882)	deleterious(0.04)	deleterious(0.694)	NULL
PTPRJ	5795	genome.wustl.edu	37	11	48186036	48186036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002843.3	+1	reviewed	p.R1275Q	0.999	356	0%	495	22%	7	42.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Y_phosphatase,HMMSmart_PTPc,superfamily_SSF52799
OR4C3	256144	genome.wustl.edu	37	11	48346624	48346624	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004702.1	+1	provisional	p.Q44H	0.001	380	0%	386	22%	0	-	possibly_damaging(0.952)	deleterious(0.02)	deleterious(0.778)	superfamily_Family A G protein-coupled receptor-like
ENSG00000166007	0	genome.wustl.edu	37	11	55059827	55059827	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000309470	-1	known	p.V361	0.205	350	0%	374	23.3%	0	-	-	-	-	HMMPfam_SPRY
LOC440041	440041	genome.wustl.edu	37	11	55062968	55062968	+	RNA	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XR_016142.3	-1	model	NULL	0.056	248	0%	282	19.5%	0	-	-	-	-	-
OR4C15	81309	genome.wustl.edu	37	11	55322523	55322523	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001001920.1	+1	provisional	p.I247	0.000	390	0.3%	352	23.3%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5I1	10798	genome.wustl.edu	37	11	55703743	55703743	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006637.1	-1	reviewed	p.I45S	0.370	111	0%	152	27.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_7tm_1,superfamily_SSF81321
OR8I2	120586	genome.wustl.edu	37	11	55861014	55861014	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001003750.1	+1	provisional	p.V77	0.000	573	0%	687	26.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ENSG00000230416	0	genome.wustl.edu	37	11	56216568	56216568	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000415874	+1	known	p.R141*	0.015	57	1.8%	48	25%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR5M11	219487	genome.wustl.edu	37	11	56310478	56310478	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005245.1	-1	provisional	p.V86I	0.033	186	0%	273	26.7%	0	-	benign(0)	tolerated(0.31)	neutral(0.027)	HMMPfam_7tm_1,superfamily_SSF81321
OR9G1	390174	genome.wustl.edu	37	11	56467944	56467944	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005213.1	+1	provisional	p.F27	0.004	600	0%	621	12.2%	0	-	-	-	-	superfamily_SSF81321
OR1S2	219958	genome.wustl.edu	37	11	57970862	57970862	+	Missense_Mutation	SNP	G	G	T	rs182524483	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004459.1	-1	validated	p.F264L	0.704	381	0%	486	23.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_7tm_1,superfamily_SSF81321
OR5B3	441608	genome.wustl.edu	37	11	58169983	58169983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005469.1	-1	validated	p.K300N	0.001	202	0%	269	29.4%	0	-	benign(0.005)	deleterious(0.04)	neutral(0.349)	superfamily_SSF81321
OR5A1	219982	genome.wustl.edu	37	11	59210718	59210718	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004728.1	+1	provisional	p.L26R	0.118	200	0%	216	19.9%	0	-	probably_damaging(0.993)	deleterious(0)	deleterious(0.895)	superfamily_SSF81321
OR5A1	219982	genome.wustl.edu	37	11	59211073	59211073	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004728.1	+1	provisional	p.C144	0.000	325	0%	353	25.5%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
MS4A6A	64231	genome.wustl.edu	37	11	59947402	59947402	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152852.1	-1	reviewed	p.L62V	0.045	169	0%	243	24.3%	49	2%	probably_damaging(0.998)	deleterious(0.04)	deleterious(0.823)	HMMPfam_CD20
TMEM109	79073	genome.wustl.edu	37	11	60687365	60687365	+	Missense_Mutation	SNP	C	C	A	rs34267166		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024092.2	+1	validated	p.A67D	0.991	189	0%	185	31.9%	49	36.7%	possibly_damaging(0.911)	deleterious(0.03)	deleterious(0.728)	NULL
DDB1	1642	genome.wustl.edu	37	11	61069765	61069765	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001923.3	-1	validated	p.K1060T	1.000	397	0%	466	14.4%	173	25.4%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_CPSF_A
AHNAK	79026	genome.wustl.edu	37	11	62301207	62301207	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001620.1	-1	validated	p.A228T	0.354	139	0%	127	27.6%	16	25%	benign(0.221)	tolerated(0.54)	neutral(0.029)	NULL
TAF6L	10629	genome.wustl.edu	37	11	62545759	62545759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006473.2	+1	reviewed	p.H130N	1.000	312	0%	371	25.6%	7	42.8%	benign(0)	tolerated(0.07)	neutral(0.319)	NULL
SLC22A24	283238	genome.wustl.edu	37	11	62850787	62850787	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001136506.1	-1	validated	p.R405C	0.091	225	0%	298	20.5%	0	-	probably_damaging(0.961)	deleterious(0.02)	deleterious(0.787)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
CCDC88B	283234	genome.wustl.edu	37	11	64111061	64111061	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032251.5	+1	reviewed	p.E431G	0.996	76	0%	32	31.2%	2	50%	probably_damaging(0.99)	deleterious(0.04)	deleterious(0.790)	NULL
SNX32	254122	genome.wustl.edu	37	11	65617947	65617947	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152760.2	+1	validated	p.V140	1.000	119	0%	125	25.6%	1	0%	-	-	-	HMMPfam_PX,superfamily_PX domain
SNX32	254122	genome.wustl.edu	37	11	65620383	65620383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152760.2	+1	validated	p.R371Q	0.998	169	0%	165	19.4%	0	-	possibly_damaging(0.781)	tolerated(0.25)	neutral(0.329)	HMMPfam_Vps5
RIN1	9610	genome.wustl.edu	37	11	66099723	66099723	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000424433	-1	known	p.F593C	0.000	79	0%	71	25.4%	2	50%	unknown(0)	-	-	NULL
B3GNT1	11041	genome.wustl.edu	37	11	66114236	66114236	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006876.2	-1	reviewed	p.E261K	1.000	49	0%	29	27.6%	7	14.2%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CCDC87	55231	genome.wustl.edu	37	11	66359633	66359633	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018219.2	-1	validated	p.S285L	0.003	41	0%	38	21.1%	0	-	benign(0.378)	tolerated(0.13)	neutral(0.373)	NULL
GSTP1	2950	genome.wustl.edu	37	11	67353646	67353646	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000398606	+1	known	p.Q136	1.000	129	0%	143	19.6%	2025	45%	-	-	-	HMMPfam_GST_C,superfamily_GST_C_like
SUV420H1	51111	genome.wustl.edu	37	11	67957520	67957520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017635.3	-1	reviewed	p.K8N	1.000	516	0%	598	23.4%	11	27.2%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
IGHMBP2	3508	genome.wustl.edu	37	11	68707045	68707045	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002180.2	+1	reviewed	p.R943I	0.999	26	0%	30	26.7%	7	42.8%	possibly_damaging(0.873)	tolerated(0.14)	deleterious(0.589)	NULL
DEFB108B	245911	genome.wustl.edu	37	11	71548577	71548577	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001002035.1	+1	provisional	p.R64I	0.000	130	0%	127	15%	0	-	possibly_damaging(0.922)	tolerated(0.61)	neutral(0.376)	NULL
KLHL35	283212	genome.wustl.edu	37	11	75139545	75139553	+	In_Frame_Del	DEL	GGGCAGGCT	GGGCAGGCT	-	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	GGGCAGGCT	GGGCAGGCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001039548.2	-1	validated	p.SLP114in_frame_del	0.367:1.000:1.000:0.999:1.000:0.976:0.994:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
DGAT2	84649	genome.wustl.edu	37	11	75495695	75495695	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032564.3	+1	validated	p.D52N	1.000	249	0%	209	31.6%	2	50%	benign(0.012)	tolerated(0.13)	neutral(0.253)	NULL
PRKRIR	5612	genome.wustl.edu	37	11	76062627	76062627	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004705.2	-1	provisional	p.E523K	1.000	54	0%	61	39.3%	3	0%	benign(0.081)	tolerated(0.56)	neutral(0.013)	NULL
PCF11	51585	genome.wustl.edu	37	11	82880562	82880562	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015885.3	+1	validated	p.R1062I	1.000	255	0%	284	18.7%	5	60%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DLG2	1740	genome.wustl.edu	37	11	83173066	83173066	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142699.1	-1	reviewed	p.E934*	1.000	613	0%	620	18.1%	1	100%	-	-	-	HMMSmart_SM00072,HMMPfam_Gua_kin_assoc_C,superfamily_P-loop containing nucleoside triphosphate hydrolases
TRIM64B	642446	genome.wustl.edu	37	11	89607345	89607345	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000329862	-1	known	p.E203*	0.001	470	0%	533	10.9%	0	-	-	-	-	NULL
FAT3	120114	genome.wustl.edu	37	11	92086413	92086413	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008781.2	+1	validated	p.E379*	1.000	335	0%	339	25.4%	0	-	-	-	-	superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92495255	92495255	+	Silent	SNP	C	C	T	rs150159060	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008781.2	+1	validated	p.D1301	0.985	163	0%	159	22.6%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92498167	92498167	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008781.2	+1	validated	p.F1369L	1.000	432	0%	478	28%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_Cadherin,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92531781	92531781	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008781.2	+1	validated	p.E1868*	1.000	250	0%	382	22.8%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Concanavalin A-like lectins/glucanases,superfamily_Cadherin-like
FAT3	120114	genome.wustl.edu	37	11	92577669	92577669	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008781.2	+1	validated	p.F3712L	1.000	78	0%	55	20%	0	-	probably_damaging(0.992)	tolerated(0.56)	neutral(0.454)	superfamily_Concanavalin A-like lectins/glucanases
SLC36A4	120103	genome.wustl.edu	37	11	92918913	92918913	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152313.2	-1	provisional	p.E41	0.997	319	0%	349	32.4%	0	-	-	-	-	NULL
MRE11A	4361	genome.wustl.edu	37	11	94163104	94163104	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005591.3	-1	reviewed	p.S681	0.045	224	0%	217	25.3%	6	33.3%	-	-	-	NULL
CCDC82	79780	genome.wustl.edu	37	11	96117829	96117829	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024725.3	-1	validated	p.R28Q	1.000	404	0%	451	20.8%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
MMP20	9313	genome.wustl.edu	37	11	102487592	102487592	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004771.3	-1	reviewed	p.R109C	0.011	292	0%	272	22.8%	0	-	probably_damaging(0.978)	tolerated(0.17)	deleterious(0.479)	NULL
MMP12	4321	genome.wustl.edu	37	11	102736573	102736573	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000326227	-1	known	p.I380S	1.000	230	0%	292	17.8%	1	0%	-	-	-	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
MMP13	4322	genome.wustl.edu	37	11	102826402	102826402	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002427.3	-1	reviewed	p.F11L	0.017	175	0%	176	21%	0	-	benign(0)	tolerated(1)	-	NULL
DYNC2H1	79659	genome.wustl.edu	37	11	103049836	103049836	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080463.1	+1	reviewed	p.R2074Q	1.000	447	0%	540	24.3%	0	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	HMMSmart_SM00382,HMMPfam_AAA_5,superfamily_P-loop containing nucleoside triphosphate hydrolases
CASP5	838	genome.wustl.edu	37	11	104893891	104893891	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NR_024239.1	-1	reviewed	NULL	0.000	152	0%	183	15.8%	0	-	-	-	-	-
GRIA4	2893	genome.wustl.edu	37	11	105769011	105769011	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000829.3	+1	reviewed	p.S248Y	1.000	88	0%	86	30.2%	0	-	benign(0.215)	tolerated(0.34)	neutral(0.044)	HMMPfam_ANF_receptor,superfamily_SSF53822
KBTBD3	143879	genome.wustl.edu	37	11	105924350	105924350	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152433.3	-1	validated	p.R356*	0.999	210	0%	240	29.2%	0	-	-	-	-	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain
C11orf53	341032	genome.wustl.edu	37	11	111156634	111156634	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198498.1	+1	predicted	p.T189M	0.982	134	0%	172	33.1%	1	0%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
FDXACB1	91893	genome.wustl.edu	37	11	111746059	111746059	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138378.1	-1	validated	p.S488P	0.987	83	0%	56	25%	1	100%	probably_damaging(0.955)	deleterious(0.03)	deleterious(0.763)	NULL
CRYAB	1410	genome.wustl.edu	37	11	111781108	111781108	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001885.1	-1	reviewed	p.L89	1.000	216	0%	288	23.3%	156	41.6%	-	-	-	HMMPfam_HSP20,superfamily_HSP20-like chaperones
ZBTB16	7704	genome.wustl.edu	37	11	113934981	113934981	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001018011.1	+1	reviewed	p.P320L	0.001	51	0%	30	26.7%	0	-	benign(0)	tolerated(0.43)	neutral(0.013)	NULL
ZBTB16	7704	genome.wustl.edu	37	11	114113010	114113010	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001018011.1	+1	reviewed	p.R525	1.000	38	0%	37	43.2%	4	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
DSCAML1	57453	genome.wustl.edu	37	11	117301646	117301646	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020693.2	-1	provisional	p.H1886	1.000	217	0%	210	21.9%	1	0%	-	-	-	NULL
SCN2B	6327	genome.wustl.edu	37	11	118047121	118047121	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004588.4	-1	validated	p.R9H	1.000	325	0%	393	25.7%	0	-	probably_damaging(0.97)	deleterious(0.04)	deleterious(0.761)	NULL
UBE4A	9354	genome.wustl.edu	37	11	118239407	118239407	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004788.2	+1	reviewed	p.F61	1.000	158	0%	160	28.7%	10	30%	-	-	-	NULL
BCL9L	283149	genome.wustl.edu	37	11	118770843	118770843	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182557.2	-1	validated	p.G1063	0.995	139	0%	281	23.1%	30	30%	-	-	-	NULL
CBL	867	genome.wustl.edu	37	11	119146802	119146802	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005188.2	+1	reviewed	p.K322T	1.000	398	0%	475	21.5%	2	50%	probably_damaging(0.963)	deleterious(0.02)	deleterious(0.788)	HMMPfam_Cbl_N3,superfamily_SSF55550
USP2	9099	genome.wustl.edu	37	11	119228770	119228770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004205.4	-1	validated	p.R448Q	1.000	233	0%	269	27.1%	0	-	benign(0.131)	deleterious(0.04)	neutral(0.360)	HMMPfam_UCH,superfamily_Cysteine proteinases
ARHGEF12	23365	genome.wustl.edu	37	11	120278517	120278517	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015313.1	+1	reviewed	p.D43Y	1.000	286	0%	360	21.9%	5	40%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SORL1	6653	genome.wustl.edu	37	11	121460005	121460005	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003105.4	+1	reviewed	p.F1328	1.000	666	0.3%	1008	25.6%	8	12.5%	-	-	-	HMMPfam_Ldl_recept_a,HMMSmart_SM00192,superfamily_LDL receptor-like module
VWA5A	4013	genome.wustl.edu	37	11	123988495	123988495	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001130142.1	+1	validated	p.F53	1.000	335	0%	360	24.4%	1	0%	-	-	-	HMMSmart_SM00609,HMMPfam_VIT
VSIG2	23584	genome.wustl.edu	37	11	124620650	124620650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014312.3	-1	provisional	p.F129L	1.000	235	0%	260	23.8%	43	9.3%	probably_damaging(0.987)	tolerated(0.62)	neutral(0.441)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
HEPACAM	220296	genome.wustl.edu	37	11	124792339	124792339	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152722.4	-1	validated	p.R298Q	0.835	170	0%	168	27.4%	0	-	possibly_damaging(0.892)	deleterious(0.03)	deleterious(0.716)	NULL
CCDC15	80071	genome.wustl.edu	37	11	124829873	124829873	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025004.2	+1	validated	p.E164K	0.000	207	0%	231	26.4%	1	0%	benign(0.047)	tolerated(0.29)	neutral(0.032)	NULL
FLI1	2313	genome.wustl.edu	37	11	128679055	128679055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002017.3	+1	validated	p.P262L	1.000	227	0%	208	23.6%	11	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
NFRKB	4798	genome.wustl.edu	37	11	129745259	129745259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006165.3	-1	validated	p.S641N	1.000	215	0%	209	20.1%	5	0%	unknown(0)	tolerated(0.18)	-	NULL
ACAD8	27034	genome.wustl.edu	37	11	134127029	134127029	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014384.2	+1	reviewed	p.F86	0.998	141	0%	142	23.9%	10	10%	unknown(0)	-	-	HMMPfam_Acyl-CoA_dh_N,superfamily_AcylCoA_dehyd_NM
GLB1L2	89944	genome.wustl.edu	37	11	134214950	134214950	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138342.3	+1	validated	p.E126K	0.348	236	0%	264	15.9%	2	0%	benign(0.006)	tolerated(0.34)	neutral(0.023)	HMMPfam_Glyco_hydro_35,superfamily_Glyco_hydro_cat
KDM5A	5927	genome.wustl.edu	37	12	427491	427491	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001042603.1	-1	reviewed	p.R893Q	1.000	231	0%	278	25.5%	5	20%	benign(0.06)	tolerated(0.58)	neutral(0.009)	HMMPfam_PLU-1
WNK1	65125	genome.wustl.edu	37	12	1005254	1005254	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018979.3	+1	reviewed	p.D1867	1.000	288	0%	270	25.6%	15	40%	-	-	-	NULL
CACNA1C	775	genome.wustl.edu	37	12	2692013	2692013	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_199460.2	+1	reviewed	p.S710L	1.000	304	0%	437	26.8%	1	0%	possibly_damaging(0.621)	tolerated(0.2)	neutral(0.266)	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
LOC100288472	100288472	genome.wustl.edu	37	12	2896652	2896652	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002343142.1	-1	model	p.E52*	1.000	26	0%	36	33.3%	0	-	-	-	-	NULL
TEAD4	7004	genome.wustl.edu	37	12	3131141	3131141	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003213.2	+1	reviewed	p.F285	1.000	262	0%	238	33.2%	11	45.4%	-	-	-	HMMPfam_TEA
C12orf4	57102	genome.wustl.edu	37	12	4627253	4627253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020374.2	-1	predicted	p.R335Q	1.000	214	0.5%	260	23.8%	1	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_DUF2362
CHD4	1108	genome.wustl.edu	37	12	6696937	6696937	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001273.2	-1	reviewed	p.L1215R	1.000	168	0%	149	28.9%	44	43.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ACRBP	84519	genome.wustl.edu	37	12	6747495	6747495	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032489.2	-1	reviewed	p.R529*	0.208	172	0%	200	24%	0	-	-	-	-	NULL
A2ML1	144568	genome.wustl.edu	37	12	9010550	9010550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144670.3	+1	validated	p.A1039V	1.000	181	0%	197	24.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_A2M_comp
A2M	2	genome.wustl.edu	37	12	9246090	9246090	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000014.4	-1	reviewed	p.E737	1.000	305	0%	354	28.5%	271	0%	-	-	-	NULL
PZP	5858	genome.wustl.edu	37	12	9313050	9313050	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002864.2	-1	validated	p.N970T	0.823	332	0%	364	29.1%	0	-	possibly_damaging(0.615)	deleterious(0.03)	deleterious(0.578)	superfamily_Terpenoid cyclases/Protein prenyltransferases,HMMPfam_Thiol-ester_cl
TAS2R10	50839	genome.wustl.edu	37	12	10978542	10978542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_023921.1	-1	reviewed	p.K109N	1.000	126	0%	132	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TAS2R,superfamily_Family A G protein-coupled receptor-like
PRB1	5542	genome.wustl.edu	37	12	11506875	11506875	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_199353.2	-1	reviewed	p.P54	0.000	343	0%	423	12.5%	0	-	-	-	-	NULL
GUCY2C	2984	genome.wustl.edu	37	12	14781625	14781625	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004963.3	-1	validated	p.R735I	1.000	589	0%	582	23.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
WBP11	51729	genome.wustl.edu	37	12	14954303	14954303	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016312.2	-1	reviewed	p.S5	0.719	416	0%	413	26.6%	14	28.5%	-	-	-	NULL
DERA	51071	genome.wustl.edu	37	12	16185658	16185658	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000437671	+1	known	p.N186D	0.003	98	0%	94	31.9%	0	-	-	-	-	NULL
MGST1	4257	genome.wustl.edu	37	12	16510603	16510603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020300.3	+1	reviewed	p.R64Q	0.954	207	0%	366	28.7%	23	52.1%	benign(0.021)	tolerated(0.16)	neutral(0.060)	HMMPfam_MAPEG
PLCZ1	89869	genome.wustl.edu	37	12	18889263	18889263	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033123.2	-1	provisional	p.K9N	0.250	262	0%	237	18.1%	0	-	-	-	-	NULL
CAPZA3	93661	genome.wustl.edu	37	12	18891248	18891248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033328.2	+1	reviewed	p.R16C	0.846	127	0%	135	11.9%	0	-	benign(0.002)	tolerated(0.13)	neutral(0.253)	HMMPfam_F-actin_cap_A,superfamily_SSF90096
SLCO1C1	53919	genome.wustl.edu	37	12	20885932	20885932	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017435.4	+1	reviewed	p.K426Q	1.000	479	0%	507	29%	0	-	possibly_damaging(0.857)	tolerated(0.27)	neutral(0.365)	HMMPfam_OATP,superfamily_MFS_gen_substrate_transporter
SLCO1A2	6579	genome.wustl.edu	37	12	21467509	21467509	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021094.3	-1	reviewed	p.K103N	0.002	313	0%	306	25.8%	0	-	benign(0.023)	tolerated(0.14)	neutral(0.251)	HMMPfam_OATP,superfamily_MFS general substrate transporter
RECQL	5965	genome.wustl.edu	37	12	21623996	21623996	+	Silent	SNP	C	C	T	rs2417989		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002907.3	-1	reviewed	p.S568	0.542	236	0%	289	26%	34	47%	-	-	-	NULL
GYS2	2998	genome.wustl.edu	37	12	21689918	21689918	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021957.3	-1	reviewed	p.K694N	1.000	364	0%	410	23.7%	0	-	possibly_damaging(0.883)	deleterious(0)	deleterious(0.789)	NULL
GYS2	2998	genome.wustl.edu	37	12	21713409	21713409	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021957.3	-1	reviewed	p.I360	1.000	322	0%	335	29.9%	0	-	-	-	-	HMMPfam_Glycogen_syn
ABCC9	10060	genome.wustl.edu	37	12	22089545	22089545	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005691.2	-1	reviewed	p.N22H	1.000	324	0%	491	28.1%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22606848	22606848	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014802.1	-1	predicted	p.E951D	1.000	285	0%	351	26.2%	7	71.4%	benign(0.184)	tolerated(1)	neutral(0.017)	NULL
KIAA0528	9847	genome.wustl.edu	37	12	22646269	22646269	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014802.1	-1	predicted	p.E384*	1.000	414	0%	513	27.1%	7	0%	-	-	-	NULL
KRAS	3845	genome.wustl.edu	37	12	25380276	25380276	+	Missense_Mutation	SNP	T	T	A	rs121913240	byCluster	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033360.2	-1	reviewed	p.Q61L	1.000	270	0%	324	25.9%	8	12.5%	benign(0.08)	deleterious(0)	neutral(0.450)	HMMSmart_SM00176,HMMSmart_SM00173,HMMSmart_SM00174,HMMSmart_SM00175,HMMPfam_Ras,superfamily_P-loop containing nucleoside triphosphate hydrolases
FGFR1OP2	26127	genome.wustl.edu	37	12	27117626	27117626	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015633.2	+1	validated	p.A241V	0.482	356	0%	376	21.5%	12	16.6%	benign(0)	deleterious(0.02)	neutral(0.383)	NULL
DNM1L	10059	genome.wustl.edu	37	12	32866233	32866233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012062.3	+1	reviewed	p.A183T	1.000	218	0%	257	22.6%	8	25%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Dynamin_N,HMMSmart_SM00053,superfamily_P-loop containing nucleoside triphosphate hydrolases
KIF21A	55605	genome.wustl.edu	37	12	39763580	39763580	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017641.3	-1	validated	p.K134T	1.000	204	0%	230	28.3%	0	-	probably_damaging(0.99)	tolerated(0.11)	deleterious(0.713)	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_P-loop containing nucleoside triphosphate hydrolases
C12orf40	283461	genome.wustl.edu	37	12	40076806	40076806	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001031748.2	+1	validated	p.S360	0.000	115	0%	122	35.2%	0	-	-	-	-	NULL
LRRK2	120892	genome.wustl.edu	37	12	40671787	40671787	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198578.3	+1	reviewed	p.S680Y	0.998	257	0%	299	25.1%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
LRRK2	120892	genome.wustl.edu	37	12	40717010	40717010	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198578.3	+1	reviewed	p.S1853Y	1.000	230	0%	250	26.4%	1	0%	possibly_damaging(0.91)	deleterious(0.02)	deleterious(0.746)	superfamily_Kinase_like
LRRK2	120892	genome.wustl.edu	37	12	40745482	40745482	+	Missense_Mutation	SNP	G	G	A	rs72547981		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198578.3	+1	reviewed	p.D2175N	0.058	197	0%	228	28.1%	1	0%	benign(0)	tolerated(0.38)	neutral(0.018)	superfamily_WD40_like
PPHLN1	51535	genome.wustl.edu	37	12	42729702	42729702	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000395580	+1	known	p.E7K	1.000	152	0%	192	24.5%	16	18.7%	benign(0.135)	tolerated(0.43)	neutral(0.025)	NULL
SCAF11	9169	genome.wustl.edu	37	12	46321128	46321128	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004719.2	-1	validated	p.K786Q	1.000	626	0%	638	24.8%	9	33.3%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
AMIGO2	347902	genome.wustl.edu	37	12	47471310	47471310	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001143668.1	-1	validated	p.I492	0.980	240	0%	188	29.8%	21	28.5%	-	-	-	NULL
ANP32D	23519	genome.wustl.edu	37	12	48866508	48866508	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012404.2	+1	reviewed	p.E21*	1.000	367	0%	434	28.1%	0	-	-	-	-	superfamily_SSF52075
CACNB3	784	genome.wustl.edu	37	12	49217513	49217513	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000725.2	+1	validated	p.V73A	0.746	171	0%	170	24.7%	6	16.6%	benign(0)	tolerated(1)	-	superfamily_SH3-domain
CERS5	91012	genome.wustl.edu	37	12	50531515	50531515	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000380189	-1	known	p.E192*	1.000	278	0%	379	25.9%	18	22.2%	-	-	-	NULL
FAM186A	121006	genome.wustl.edu	37	12	50790182	50790182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145475.1	-1	provisional	p.P29L	0.001	343	0%	409	22.7%	0	-	possibly_damaging(0.901)	tolerated(0.48)	neutral(0.367)	NULL
DIP2B	57609	genome.wustl.edu	37	12	51034530	51034530	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173602.2	+1	validated	p.E66*	1.000	230	0%	259	32.8%	0	-	-	-	-	HMMPfam_DMAP_binding
TFCP2	7024	genome.wustl.edu	37	12	51501076	51501076	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005653.4	-1	reviewed	p.R257	1.000	707	0%	766	22.1%	14	35.7%	-	-	-	HMMPfam_CP2
KRT80	144501	genome.wustl.edu	37	12	52566020	52566020	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182507.2	-1	reviewed	p.I380	0.997	171	0%	177	31.6%	32	46.8%	-	-	-	HMMPfam_Filament
KRT75	9119	genome.wustl.edu	37	12	52822481	52822481	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004693.2	-1	reviewed	p.R361Q	1.000	507	0%	425	27.8%	1	0%	probably_damaging(0.96)	deleterious(0.02)	deleterious(0.786)	superfamily_Prefoldin,HMMPfam_Filament
KRT75	9119	genome.wustl.edu	37	12	52827609	52827609	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004693.2	-1	reviewed	p.F160	0.908	419	0%	337	28.2%	0	-	-	-	-	HMMPfam_Filament
KRT72	140807	genome.wustl.edu	37	12	52981619	52981619	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_080747.2	-1	reviewed	p.T369M	0.006	100	0%	88	28.4%	6	16.6%	benign(0.052)	tolerated(0.06)	neutral(0.326)	HMMPfam_Filament
SP1	6667	genome.wustl.edu	37	12	53776623	53776623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138473.2	+1	validated	p.P298S	1.000	193	0%	228	31.6%	10	40%	possibly_damaging(0.949)	tolerated(1)	neutral(0.393)	NULL
AMHR2	269	genome.wustl.edu	37	12	53818087	53818087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020547.2	+1	reviewed	p.R22Q	1.000	111	0%	107	26.2%	0	-	probably_damaging(0.994)	tolerated(0.07)	deleterious(0.771)	superfamily_Snake toxin-like
NPFF	8620	genome.wustl.edu	37	12	53900675	53900675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003717.2	-1	reviewed	p.F76C	1.000	104	0%	83	28.9%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
CALCOCO1	57658	genome.wustl.edu	37	12	54117417	54117417	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020898.2	-1	validated	p.S137C	1.000	86	0%	98	29.6%	17	41.1%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	HMMPfam_CALCOCO1
ITGA5	3678	genome.wustl.edu	37	12	54793716	54793716	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002205.2	-1	reviewed	p.S887P	0.001	98	0%	100	10%	28	0%	benign(0)	tolerated(0.18)	neutral(0.056)	HMMPfam_Integrin_alpha2,superfamily_SSF69179
NCKAP1L	3071	genome.wustl.edu	37	12	54913059	54913059	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005337.4	+1	reviewed	p.R523Q	0.661	305	0%	283	31.4%	20	0%	benign(0)	tolerated(0.11)	neutral(0.272)	HMMPfam_Nckap1
OR6C74	254783	genome.wustl.edu	37	12	55641569	55641569	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005490.1	+1	provisional	p.F166L	0.405	142	0%	149	32.2%	0	-	possibly_damaging(0.946)	deleterious(0)	deleterious(0.835)	HMMPfam_7tm_1,superfamily_SSF81321
OR6C3	254786	genome.wustl.edu	37	12	55726167	55726167	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_054104.1	+1	provisional	p.A228V	0.001	568	0%	655	29.6%	0	-	benign(0.001)	tolerated(0.2)	neutral(0.049)	HMMPfam_7tm_1,superfamily_SSF81321
PHC1P1	653441	genome.wustl.edu	37	12	55808033	55808033	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000326184	-1	known	p.R163Q	0.008	229	0.9%	272	33.8%	1	0%	-	-	-	NULL
MMP19	4327	genome.wustl.edu	37	12	56231644	56231644	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002429.4	-1	reviewed	p.W348L	0.997	187	0%	149	19.5%	4	0%	benign(0.059)	deleterious(0.03)	neutral(0.368)	superfamily_Hemopexin-like domain,HMMPfam_Hemopexin,HMMSmart_SM00120
LRP1	4035	genome.wustl.edu	37	12	57586646	57586646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002332.2	+1	reviewed	p.R2483Q	0.947	55	0%	34	11.8%	9	0%	benign(0.012)	tolerated(0.54)	neutral(0.008)	HMMSmart_SM00181,superfamily_EGF/Laminin,superfamily_YWTD domain
LRIG3	121227	genome.wustl.edu	37	12	59282733	59282733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153377.3	-1	provisional	p.R224Q	1.000	299	0%	283	36%	8	37.5%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_RNI-like
C12orf56	115749	genome.wustl.edu	37	12	64661029	64661029	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001099676.2	-1	validated	p.P441	0.008	205	0%	281	26.3%	9	33.3%	-	-	-	NULL
GNS	2799	genome.wustl.edu	37	12	65113864	65113864	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002076.3	-1	reviewed	p.R506	0.982	535	0%	434	28.8%	16	50%	-	-	-	superfamily_Alkaline_phosphatase_core
LEMD3	23592	genome.wustl.edu	37	12	65612340	65612340	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014319.4	+1	reviewed	p.E546*	1.000	147	0%	172	30.8%	4	0%	-	-	-	NULL
IRAK3	11213	genome.wustl.edu	37	12	66638935	66638935	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007199.2	+1	reviewed	p.L403I	0.125	197	0%	161	27.3%	2	0%	probably_damaging(0.996)	tolerated(0.24)	deleterious(0.499)	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
IFNG	3458	genome.wustl.edu	37	12	68549155	68549155	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000619.2	-1	reviewed	p.R160Q	0.077	208	0%	181	35.9%	1	0%	possibly_damaging(0.886)	tolerated(0.22)	neutral(0.388)	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72027214	72027214	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144982.4	-1	validated	p.L839I	1.000	92	0%	106	30.2%	1	100%	probably_damaging(0.999)	tolerated(0.05)	deleterious(0.836)	NULL
ZFC3H1	196441	genome.wustl.edu	37	12	72050882	72050882	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144982.4	-1	validated	p.F266	0.062	597	0%	586	24.4%	2	0%	-	-	-	NULL
TBC1D15	64786	genome.wustl.edu	37	12	72314572	72314572	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022771.4	+1	reviewed	p.E571G	1.000	626	0%	767	15.1%	18	16.6%	possibly_damaging(0.892)	deleterious(0)	deleterious(0.796)	HMMPfam_TBC,HMMSmart_SM00164,superfamily_Ypt/Rab-GAP domain of gyp1p
NAV3	89795	genome.wustl.edu	37	12	78444889	78444889	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014903.4	+1	validated	p.I826	0.991	43	0%	27	25.9%	0	-	-	-	-	NULL
PAWR	5074	genome.wustl.edu	37	12	79988129	79988129	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002583.2	-1	reviewed	p.E306*	1.000	594	0%	623	27.6%	16	31.2%	-	-	-	NULL
MIR617	693202	genome.wustl.edu	37	12	81226313	81226313	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000385030	-1	known	NULL	0.000	248	0%	265	26.8%	0	-	-	-	-	-
ACSS3	79611	genome.wustl.edu	37	12	81627192	81627192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024560.2	+1	validated	p.R554Q	1.000	549	0.2%	681	25.3%	3	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
PPFIA2	8499	genome.wustl.edu	37	12	81688676	81688676	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003625.2	-1	reviewed	p.R955*	1.000	309	0%	407	24.8%	1	0%	-	-	-	HMMPfam_SAM_1,HMMSmart_SM00454,superfamily_SAM/Pointed domain
LRRIQ1	84125	genome.wustl.edu	37	12	85492145	85492145	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001079910.1	+1	validated	p.S967Y	1.000	197	0%	166	21.7%	0	-	probably_damaging(0.991)	deleterious(0.04)	deleterious(0.793)	superfamily_RNI-like
CEP290	80184	genome.wustl.edu	37	12	88487722	88487722	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025114.3	-1	reviewed	p.K1045T	1.000	156	0%	189	27%	2	50%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
GALNT4	8693	genome.wustl.edu	37	12	89917404	89917404	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003774.3	-1	reviewed	p.T308N	1.000	138	0%	163	24.5%	6	16.6%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	HMMPfam_Glycos_transf_2,superfamily_Nucleotide-diphospho-sugar transferases
DCN	1634	genome.wustl.edu	37	12	91540003	91540003	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001920.3	-1	reviewed	p.I304	0.998	230	0%	267	16.1%	217	0%	-	-	-	superfamily_L domain-like
EEA1	8411	genome.wustl.edu	37	12	93220012	93220012	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003566.3	-1	validated	p.K485T	1.000	678	0%	776	29%	2	50%	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
AMDHD1	144193	genome.wustl.edu	37	12	96348697	96348697	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152435.2	+1	validated	p.D85Y	1.000	407	0.7%	548	12.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Composite domain of metallo-dependent hydrolases,superfamily_Metallo-dependent hydrolases
TMPO	7112	genome.wustl.edu	37	12	98941365	98941365	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001032283.2	+1	reviewed	p.R365K	1.000	202	0%	186	24.7%	11	36.3%	probably_damaging(0.973)	tolerated(0.25)	neutral(0.452)	NULL
SLC25A3	5250	genome.wustl.edu	37	12	98992403	98992403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005888.3	+1	reviewed	p.R189Q	1.000	169	0%	163	25.8%	344	36.9%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr
UHRF1BP1L	23074	genome.wustl.edu	37	12	100489615	100489615	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015054.1	-1	validated	p.L224V	1.000	199	0%	239	27.6%	1	0%	benign(0.097)	tolerated(0.62)	neutral(0.011)	NULL
SLC5A8	160728	genome.wustl.edu	37	12	101595994	101595994	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145913.3	-1	validated	e3-1	1.000	253	0%	337	24%	0	-	-	-	-	-
GNPTAB	79158	genome.wustl.edu	37	12	102147186	102147186	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024312.4	-1	reviewed	p.R1189Q	1.000	246	0%	363	27.5%	23	26%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	NULL
GNPTAB	79158	genome.wustl.edu	37	12	102161839	102161839	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024312.4	-1	reviewed	p.D462N	1.000	159	0%	254	20.9%	14	14.2%	possibly_damaging(0.937)	deleterious(0)	deleterious(0.828)	HMMPfam_Notch,HMMSmart_SM00004,superfamily_Notch domain
STAB2	55576	genome.wustl.edu	37	12	104025440	104025440	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017564.9	+1	reviewed	p.Y184*	0.987	260	0%	318	24.8%	0	-	-	-	-	HMMPfam_EGF_alliinase,PatternScan_EGF_1
STAB2	55576	genome.wustl.edu	37	12	104134518	104134518	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017564.9	+1	reviewed	p.F1955	0.927	103	0%	80	32.5%	0	-	-	-	-	superfamily_Grow_fac_recept
NUAK1	9891	genome.wustl.edu	37	12	106461344	106461344	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014840.2	-1	validated	p.E408K	1.000	170	0%	130	25.4%	2	0%	benign(0.402)	tolerated(0.23)	neutral(0.171)	NULL
WSCD2	9671	genome.wustl.edu	37	12	108634210	108634210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014653.2	+1	validated	p.D412N	1.000	70	0%	70	35.7%	1	0%	benign(0.112)	deleterious(0.04)	neutral(0.358)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SVOP	55530	genome.wustl.edu	37	12	109328023	109328023	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018711.2	-1	validated	p.R272W	0.830	143	0%	183	23%	0	-	-	-	-	NULL
UBE3B	89910	genome.wustl.edu	37	12	109921498	109921498	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_130466.2	+1	reviewed	p.R48*	0.009	256	0.4%	269	27.9%	5	60%	-	-	-	HMMPfam_IQ,HMMSmart_SM00015
ANKRD13A	88455	genome.wustl.edu	37	12	110474085	110474085	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033121.1	+1	validated	p.S510L	0.984	300	0%	376	25.8%	32	34.3%	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	NULL
GPN3	51184	genome.wustl.edu	37	12	110903017	110903017	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016301.3	-1	validated	p.S17	1.000	175	0%	230	31.7%	15	46.6%	-	-	-	HMMPfam_ATP_bind_1,superfamily_P-loop containing nucleoside triphosphate hydrolases
RAD9B	144715	genome.wustl.edu	37	12	110968446	110968446	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000409300	+1	known	p.F414L	0.000	233	0%	229	27.5%	0	-	benign(0.067)	deleterious(0)	neutral(0.449)	NULL
NAA25	80018	genome.wustl.edu	37	12	112499021	112499021	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024953.3	-1	reviewed	p.E441*	1.000	129	0%	192	32.3%	0	-	-	-	-	HMMPfam_NatB_MDM20,superfamily_TPR-like
RPL6	6128	genome.wustl.edu	37	12	112843672	112843672	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000970.3	-1	reviewed	p.F233	1.000	405	0%	387	18.3%	797	23.3%	-	-	-	HMMPfam_Ribosomal_L6e
PTPN11	5781	genome.wustl.edu	37	12	112891102	112891102	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002834.3	+1	reviewed	p.D146Y	1.000	231	0%	315	21.6%	11	9%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_SH2,HMMSmart_SM00252,superfamily_SH2 domain
TESC	54997	genome.wustl.edu	37	12	117494630	117494630	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017899.3	-1	validated	p.R117C	1.000	215	0%	228	27.2%	27	44.4%	probably_damaging(0.982)	deleterious(0.02)	deleterious(0.809)	superfamily_EF-hand
CIT	11113	genome.wustl.edu	37	12	120173162	120173162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007174.1	-1	validated	p.V945I	1.000	338	0%	402	16.9%	1	0%	possibly_damaging(0.737)	tolerated(0.15)	deleterious(0.510)	NULL
OASL	8638	genome.wustl.edu	37	12	121471448	121471448	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003733.2	-1	validated	p.K99	0.001	96	0%	101	14.9%	4	25%	-	-	-	superfamily_Nucleotidyltransferase
CLIP1	6249	genome.wustl.edu	37	12	122826046	122826046	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002956.2	-1	validated	p.E558*	0.999	130	0%	133	24.8%	4	0%	-	-	-	NULL
SBNO1	55206	genome.wustl.edu	37	12	123821020	123821020	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018183.3	-1	validated	p.E223*	1.000	464	0%	521	27.1%	0	-	-	-	-	NULL
DNAH10	196385	genome.wustl.edu	37	12	124311441	124311441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207437.3	+1	validated	p.D1345Y	1.000	125	0%	137	30.7%	0	-	possibly_damaging(0.816)	deleterious(0.02)	deleterious(0.692)	HMMPfam_DHC_N2
PIWIL1	9271	genome.wustl.edu	37	12	130833930	130833930	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004764.3	+1	reviewed	p.K294T	0.015	308	0%	349	19.8%	0	-	benign(0)	tolerated(0.46)	neutral(0.012)	HMMPfam_PAZ,superfamily_PAZ domain
GPR133	283383	genome.wustl.edu	37	12	131593322	131593322	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198827.3	+1	validated	p.F647	0.997	292	0%	311	24.1%	0	-	-	-	-	HMMPfam_7tm_2
POLE	5426	genome.wustl.edu	37	12	133253184	133253184	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006231.2	-1	validated	p.P286R	1.000	199	0%	222	29.7%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold
ZNF268	10795	genome.wustl.edu	37	12	133780328	133780328	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003415.2	+1	validated	p.H686Y	0.987	235	0%	297	13.8%	8	25%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF268	10795	genome.wustl.edu	37	12	133780671	133780671	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003415.2	+1	validated	p.R800I	1.000	142	0%	175	24.6%	3	0%	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZMYM5	9205	genome.wustl.edu	37	13	20425903	20425903	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142684.1	-1	validated	p.E140K	1.000	279	0%	263	13.7%	9	33.3%	possibly_damaging(0.653)	deleterious(0)	deleterious(0.674)	NULL
IFT88	8100	genome.wustl.edu	37	13	21212619	21212619	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_175605.3	+1	reviewed	p.R521I	1.000	153	0%	155	27.1%	5	40%	probably_damaging(0.97)	tolerated(0.14)	deleterious(0.662)	HMMPfam_TPR_1,HMMSmart_SM00671,HMMSmart_SM00028,superfamily_TPR-like
SKA3	221150	genome.wustl.edu	37	13	21746536	21746536	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000314759	-1	known	p.M91I	0.829	198	0%	250	14.8%	1	0%	benign(0.001)	tolerated(0.19)	neutral(0.050)	NULL
SACS	26278	genome.wustl.edu	37	13	23910738	23910738	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014363.4	-1	reviewed	p.R2426Q	1.000	226	0%	225	27.6%	0	-	probably_damaging(0.999)	tolerated(0.34)	deleterious(0.513)	NULL
PABPC3	5042	genome.wustl.edu	37	13	25670397	25670397	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030979.2	+1	validated	p.D21N	1.000	79	0%	90	28.9%	0	-	possibly_damaging(0.779)	tolerated(0.06)	deleterious(0.614)	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD
HMGB1	3146	genome.wustl.edu	37	13	31037343	31037343	+	Splice_Site	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002128.4	-1	validated	e2+1	1.000	393	0.5%	408	29.9%	5	100%	-	-	-	-
ZAR1L	646799	genome.wustl.edu	37	13	32878056	32878056	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001136571.1	-1	reviewed	p.F309C	1.000	263	0%	283	28.3%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	NULL
NBEA	26960	genome.wustl.edu	37	13	35622789	35622789	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015678.4	+1	validated	p.I271M	1.000	202	0%	269	23%	0	-	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	superfamily_Concanavalin A-like lectins/glucanases,superfamily_ARM repeat
NBEA	26960	genome.wustl.edu	37	13	35733260	35733260	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015678.4	+1	validated	p.I984	0.997	156	0%	259	25.5%	1	0%	-	-	-	superfamily_ARM repeat
DCLK1	9201	genome.wustl.edu	37	13	36699997	36699997	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004734.3	-1	validated	p.R93Q	1.000	147	0%	144	37.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DCX,HMMSmart_DCX,superfamily_SSF89837
LOC646879	646879	genome.wustl.edu	37	13	37368744	37368744	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_929841.3	+1	model	p.N42H	0.980	58	0%	89	20.2%	0	-	-	-	-	NULL
POSTN	10631	genome.wustl.edu	37	13	38161044	38161044	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006475.2	-1	validated	p.R210*	1.000	187	0%	249	24.9%	7	0%	-	-	-	HMMPfam_Fasciclin,HMMSmart_SM00554,superfamily_FAS1 domain
FREM2	341640	genome.wustl.edu	37	13	39424215	39424215	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207361.4	+1	reviewed	p.S2140	0.831	253	0%	325	23.7%	1	0%	-	-	-	HMMPfam_Calx-beta,HMMSmart_SM00237
KBTBD7	84078	genome.wustl.edu	37	13	41767925	41767925	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032138.4	-1	provisional	p.R157W	1.000	117	0%	142	26.1%	2	0%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB
DGKH	160851	genome.wustl.edu	37	13	42773762	42773762	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178009.2	+1	reviewed	p.K782N	1.000	94	0%	110	20.9%	1	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_DAGK_acc,HMMSmart_SM00045
COG3	83548	genome.wustl.edu	37	13	46056515	46056515	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031431.2	+1	reviewed	e6-1	1.000	265	0%	285	23.2%	0	-	-	-	-	-
FAM194B	220081	genome.wustl.edu	37	13	46135536	46135536	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182542.2	-1	predicted	p.R459*	0.000	920	0%	932	24.9%	0	-	-	-	-	NULL
SETDB2	83852	genome.wustl.edu	37	13	50055245	50055245	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031915.2	+1	validated	p.I395M	0.973	251	0%	334	32.6%	1	0%	possibly_damaging(0.801)	deleterious(0.03)	deleterious(0.666)	HMMPfam_SET,HMMSmart_SM00317,superfamily_SET domain
SERPINE3	647174	genome.wustl.edu	37	13	51929209	51929209	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001101320.1	+1	validated	p.K310N	0.918	290	0%	379	32.2%	0	-	probably_damaging(0.998)	deleterious(0.01)	deleterious(0.880)	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
WDFY2	115825	genome.wustl.edu	37	13	52332385	52332385	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_052950.3	+1	reviewed	p.F374	0.999	274	0.4%	309	25.9%	18	55.5%	-	-	-	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40
ATP7B	540	genome.wustl.edu	37	13	52532521	52532521	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000053.2	-1	reviewed	p.V761L	0.867	109	0%	105	26.7%	2	0%	probably_damaging(0.968)	tolerated(0.89)	neutral(0.410)	NULL
LECT1	11061	genome.wustl.edu	37	13	53298236	53298236	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007015.2	-1	reviewed	p.G122*	1.000	207	0%	259	19.7%	0	-	-	-	-	HMMPfam_BRICHOS
PCDH17	27253	genome.wustl.edu	37	13	58206695	58206695	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001040429.2	+1	reviewed	p.I5	1.000	129	0%	157	18.5%	4	0%	-	-	-	NULL
PCDH17	27253	genome.wustl.edu	37	13	58207092	58207092	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001040429.2	+1	reviewed	p.E138K	0.999	90	0%	111	18%	3	0%	benign(0.002)	tolerated(0.81)	neutral(0.001)	HMMPfam_Cadherin,superfamily_Cadherin-like
LOC341689	341689	genome.wustl.edu	37	13	59104758	59104758	+	RNA	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XR_017487.3	+1	model	NULL	0.372	186	0%	146	30.1%	0	-	-	-	-	-
PCDH9	5101	genome.wustl.edu	37	13	67800804	67800804	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_203487.2	-1	reviewed	p.T590N	1.000	122	0%	126	22.2%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Cadherin,superfamily_Cadherin-like
TBC1D4	9882	genome.wustl.edu	37	13	75884108	75884108	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014832.2	-1	validated	p.R855*	1.000	645	0.3%	653	23.3%	3	33.3%	-	-	-	NULL
TBC1D4	9882	genome.wustl.edu	37	13	75900457	75900457	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014832.2	-1	validated	p.R637*	0.998	251	0%	248	23.8%	2	0%	-	-	-	NULL
RBM26	64062	genome.wustl.edu	37	13	79951531	79951531	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022118.3	-1	validated	p.D104Y	1.000	442	0%	485	17.3%	3	0%	unknown(0)	deleterious(0.04)	-	superfamily_SSF101233
SLITRK1	114798	genome.wustl.edu	37	13	84454715	84454715	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_052910.1	-1	reviewed	p.K310Q	1.000	336	0%	278	30.9%	0	-	possibly_damaging(0.903)	tolerated(0.13)	deleterious(0.611)	NULL
SLITRK1	114798	genome.wustl.edu	37	13	84455347	84455347	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_052910.1	-1	reviewed	p.P99L	1.000	139	0%	143	23.1%	0	-	possibly_damaging(0.68)	tolerated(0.16)	neutral(0.302)	superfamily_SSF52058
SLITRK6	84189	genome.wustl.edu	37	13	86370073	86370073	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032229.2	-1	validated	p.R191C	1.000	139	0%	167	26.9%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like
SLITRK5	26050	genome.wustl.edu	37	13	88328906	88328906	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015567.1	+1	validated	p.I421	0.993	125	0%	124	28.2%	0	-	-	-	-	superfamily_L domain-like
GPC5	2262	genome.wustl.edu	37	13	92346016	92346016	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004466.4	+1	reviewed	p.E301*	1.000	127	0%	133	15.8%	0	-	-	-	-	HMMPfam_Glypican
UGGT2	55757	genome.wustl.edu	37	13	96506702	96506702	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020121.3	-1	validated	p.R1346*	0.901	198	0%	206	22.3%	7	28.5%	-	-	-	superfamily_Nucleotide-diphospho-sugar transferases
DOCK9	23348	genome.wustl.edu	37	13	99489770	99489770	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000357329	-1	known	p.S1409Y	0.924	250	0%	341	26.4%	10	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
DOCK9	23348	genome.wustl.edu	37	13	99578104	99578104	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001130049.1	-1	validated	p.R136*	1.000	251	0%	284	24.6%	1	100%	-	-	-	NULL
TM9SF2	9375	genome.wustl.edu	37	13	100172361	100172361	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004800.1	+1	provisional	p.R104I	1.000	276	0%	333	24.9%	28	50%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_EMP70
A2LD1	87769	genome.wustl.edu	37	13	101184603	101184603	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033110.1	-1	provisional	p.F81	0.997	22	0%	21	19%	6	33.3%	-	-	-	HMMPfam_AIG2,superfamily_SSF110857
TPP2	7174	genome.wustl.edu	37	13	103292684	103292684	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003291.2	+1	reviewed	p.R660*	1.000	410	0.2%	524	26%	7	14.2%	-	-	-	NULL
TPP2	7174	genome.wustl.edu	37	13	103326785	103326785	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003291.2	+1	reviewed	p.S1162Y	1.000	190	0%	228	34.2%	13	7.6%	benign(0.055)	deleterious(0.03)	neutral(0.368)	NULL
METTL21C	196541	genome.wustl.edu	37	13	103338671	103338671	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010977.1	-1	predicted	p.E169*	0.554	266	0%	330	17.9%	0	-	-	-	-	HMMPfam_Methyltransf_16,superfamily_SSF53335
METTL21C	196541	genome.wustl.edu	37	13	103339363	103339363	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001010977.1	-1	predicted	p.L109F	0.989	152	0%	191	20.9%	1	0%	benign(0.056)	tolerated(0.14)	neutral(0.253)	HMMPfam_Methyltransf_16,superfamily_SSF53335
LOC643677	643677	genome.wustl.edu	37	13	103387989	103387989	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002344085.1	-1	model	p.D4868Y	0.001	489	0%	597	22.9%	0	-	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
LOC643677	643677	genome.wustl.edu	37	13	103389368	103389368	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002344085.1	-1	model	p.R4408I	0.157	448	0%	462	24.9%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103390947	103390947	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002344085.1	-1	model	p.E3963*	0.001	555	0.2%	465	26.2%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103393012	103393012	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002344085.1	-1	model	p.E3274D	0.000	341	0%	421	23.5%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103394542	103394542	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002344085.1	-1	model	p.Q2764H	0.001	445	0%	496	24.2%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103395955	103395955	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002344085.1	-1	model	p.F2293L	0.000	374	0%	345	28.1%	0	-	-	-	-	NULL
LOC643677	643677	genome.wustl.edu	37	13	103398571	103398571	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002344085.1	-1	model	p.I1421	0.000	108	0%	92	37%	0	-	-	-	-	NULL
ARGLU1	55082	genome.wustl.edu	37	13	107209431	107209431	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018011.3	-1	validated	p.N208D	1.000	704	0%	800	20.4%	58	32.7%	possibly_damaging(0.615)	deleterious(0.02)	deleterious(0.597)	NULL
CARKD	55739	genome.wustl.edu	37	13	111274678	111274678	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018210.2	+1	validated	p.Q72H	0.995	565	0%	756	27.4%	11	54.5%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_SSF53613
TUBGCP3	10426	genome.wustl.edu	37	13	113143948	113143948	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006322.4	-1	provisional	p.E838*	1.000	457	0%	573	27.1%	10	40%	-	-	-	NULL
CUL4A	8451	genome.wustl.edu	37	13	113897449	113897449	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008895.1	+1	validated	p.R401	1.000	120	0.8%	163	11%	25	28%	-	-	-	HMMPfam_Cullin,superfamily_Cullin homology domain,superfamily_Cullin repeat
UPF3A	65110	genome.wustl.edu	37	13	115048389	115048389	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_023011.2	+1	reviewed	p.F131C	1.000	557	0.2%	536	28.4%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Smg4_UPF3,superfamily_RNA-binding domain RBD
OR4K2	390431	genome.wustl.edu	37	14	20345112	20345112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005501.1	+1	provisional	p.S229F	0.938	295	0%	354	15.8%	0	-	benign(0.06)	deleterious(0.01)	neutral(0.410)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
OR4L1	122742	genome.wustl.edu	37	14	20529137	20529137	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004717.1	+1	provisional	p.F312V	0.096	90	0%	60	21.7%	0	-	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
OR4K17	390436	genome.wustl.edu	37	14	20585845	20585845	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004715.1	+1	provisional	p.L94F	0.999	412	0%	342	24.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
RNASE10	338879	genome.wustl.edu	37	14	20978657	20978657	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001012975.1	+1	provisional	p.F9L	0.854	212	0%	283	28.3%	1	0%	benign(0.005)	tolerated(0.39)	neutral(0.016)	NULL
RNASE10	338879	genome.wustl.edu	37	14	20979107	20979107	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001012975.1	+1	provisional	p.C159	0.702	132	0%	131	29.8%	0	-	-	-	-	HMMPfam_RnaseA,HMMSmart_SM00092,superfamily_RNase A-like
METTL17	64745	genome.wustl.edu	37	14	21462714	21462714	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001029991.1	+1	validated	p.S237F	0.989	433	0%	481	27.2%	21	38%	probably_damaging(0.992)	deleterious(0.05)	deleterious(0.793)	HMMPfam_Rsm22,superfamily_SSF53335
NDRG2	57447	genome.wustl.edu	37	14	21490305	21490305	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_201535.1	-1	reviewed	p.D87G	0.999	284	0%	345	16.8%	92	31.5%	possibly_damaging(0.895)	deleterious(0.01)	deleterious(0.758)	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
NDRG2	57447	genome.wustl.edu	37	14	21490583	21490583	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_201535.1	-1	reviewed	p.A64V	1.000	411	0%	439	30.5%	87	49.4%	probably_damaging(0.998)	tolerated(0.55)	deleterious(0.481)	HMMPfam_Ndr,superfamily_alpha/beta-Hydrolases
MYH6	4624	genome.wustl.edu	37	14	23858687	23858687	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002471.3	-1	validated	p.A1298V	1.000	228	0%	147	24.5%	0	-	benign(0.123)	tolerated(0.08)	neutral(0.310)	HMMPfam_Myosin_tail_1,superfamily_Prefoldin
EAPP	55837	genome.wustl.edu	37	14	35005336	35005336	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018453.3	-1	reviewed	p.K74E	1.000	352	0%	344	29.9%	18	50%	benign(0.357)	tolerated(0.17)	neutral(0.172)	NULL
CTAGE5	4253	genome.wustl.edu	37	14	39769117	39769117	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005930.3	+1	validated	p.K241T	1.000	477	0%	633	28.9%	31	48.3%	possibly_damaging(0.946)	tolerated(0.13)	deleterious(0.643)	NULL
KLHL28	54813	genome.wustl.edu	37	14	45415047	45415047	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017658.3	-1	validated	p.R29C	1.000	129	0%	157	28%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_POZ domain,HMMPfam_BTB
ABHD12B	145447	genome.wustl.edu	37	14	51345506	51345506	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000337334	+1	known	p.K92	0.758	316	0%	307	20.8%	0	-	probably_damaging(0.981)	-	-	NULL
TMX1	81542	genome.wustl.edu	37	14	51712152	51712152	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000267434	+1	known	p.W14*	0.000	201	0%	216	28.7%	0	-	-	-	-	NULL
TXNDC16	57544	genome.wustl.edu	37	14	52899100	52899100	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020784.2	-1	validated	p.W800*	0.904	323	0%	422	20.9%	1	0%	-	-	-	NULL
FERMT2	10979	genome.wustl.edu	37	14	53341999	53341999	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134999.1	-1	validated	p.D347G	1.000	338	0%	348	24.4%	7	0%	possibly_damaging(0.595)	deleterious(0)	deleterious(0.650)	HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41
FERMT2	10979	genome.wustl.edu	37	14	53347987	53347987	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001134999.1	-1	validated	p.L243I	1.000	213	0%	220	23.6%	2	0%	benign(0.014)	tolerated(0.26)	neutral(0.035)	HMMSmart_B41
DDHD1	80821	genome.wustl.edu	37	14	53558539	53558539	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030637.2	-1	validated	p.K418T	1.000	459	0%	501	26.1%	3	33.3%	probably_damaging(1)	tolerated(0.27)	deleterious(0.533)	NULL
SAMD4A	23034	genome.wustl.edu	37	14	55241809	55241809	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015589.4	+1	validated	p.R624C	1.000	177	0%	140	20.7%	4	25%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
WDHD1	11169	genome.wustl.edu	37	14	55422349	55422349	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007086.2	-1	reviewed	p.E994*	0.992	479	0%	512	12.1%	2	0%	-	-	-	superfamily_WD40_like
SLC35F4	341880	genome.wustl.edu	37	14	58036618	58036618	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080455.1	-1	provisional	p.L374F	0.999	130	0%	160	31.2%	0	-	benign(0.007)	tolerated(0.25)	neutral(0.037)	NULL
ARID4A	5926	genome.wustl.edu	37	14	58766575	58766575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002892.3	+1	reviewed	p.M1I	1.000	243	0%	249	19.7%	6	16.6%	benign(0.004)	tolerated(0.05)	neutral(0.345)	NULL
GPR135	64582	genome.wustl.edu	37	14	59930654	59930654	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022571.5	-1	validated	p.R431*	0.883	80	0%	50	28%	0	-	-	-	-	NULL
C14orf39	317761	genome.wustl.edu	37	14	60951601	60951601	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_174978.2	-1	validated	p.N35T	0.998	298	0%	322	29.5%	0	-	benign(0.051)	deleterious(0)	neutral(0.448)	NULL
TRMT5	57570	genome.wustl.edu	37	14	61442713	61442713	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020810.2	-1	validated	p.G308	0.007	176	0%	256	26.2%	4	75%	-	-	-	HMMPfam_Met_10,superfamily_SSF53335
TRMT5	57570	genome.wustl.edu	37	14	61442841	61442841	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020810.2	-1	validated	p.R266*	1.000	64	0%	84	29.8%	6	0%	-	-	-	HMMPfam_Met_10,superfamily_SSF53335
KCNH5	27133	genome.wustl.edu	37	14	63174694	63174694	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_139318.3	-1	reviewed	p.K833N	1.000	479	0%	479	22.3%	0	-	possibly_damaging(0.87)	deleterious(0.03)	deleterious(0.703)	NULL
ARG2	384	genome.wustl.edu	37	14	68114862	68114862	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001172.3	+1	reviewed	p.R274Q	1.000	192	0%	236	23.7%	29	48.2%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Arginase,superfamily_Arginase/deacetylase
ACTN1	87	genome.wustl.edu	37	14	69352156	69352156	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001130004.1	-1	reviewed	p.I457	0.889	135	0%	109	27.5%	75	21.3%	-	-	-	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin
MED6	10001	genome.wustl.edu	37	14	71064431	71064431	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005466.2	-1	validated	p.V29A	1.000	145	0%	170	22.4%	5	40%	possibly_damaging(0.916)	deleterious(0)	deleterious(0.811)	NULL
RGS6	9628	genome.wustl.edu	37	14	72976983	72976983	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004296.4	+1	validated	p.L363I	1.000	151	0%	157	24.8%	1	0%	possibly_damaging(0.668)	tolerated(0.31)	neutral(0.264)	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS
YLPM1	56252	genome.wustl.edu	37	14	75245171	75245171	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019589.2	+1	validated	p.R299*	1.000	185	0%	172	21.5%	4	25%	-	-	-	NULL
ESRRB	2103	genome.wustl.edu	37	14	76966249	76966249	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000380887	+1	known	p.M447R	0.000	164	0%	144	29.9%	0	-	benign(0.001)	tolerated(0.56)	neutral(0.006)	NULL
VASH1	22846	genome.wustl.edu	37	14	77237557	77237557	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014909.4	+1	validated	p.F141L	1.000	238	0%	191	27.2%	4	0%	possibly_damaging(0.942)	deleterious(0.05)	deleterious(0.732)	NULL
C14orf166B	145497	genome.wustl.edu	37	14	77304271	77304271	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_194287.2	+1	validated	p.F184L	0.810	346	0%	413	30%	1	0%	benign(0.001)	tolerated(0.36)	neutral(0.020)	HMMSmart_SM00368,superfamily_RNI-like
SNW1	22938	genome.wustl.edu	37	14	78217744	78217744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012245.2	-1	reviewed	p.S83L	1.000	368	0%	380	26.8%	16	25%	probably_damaging(0.995)	deleterious(0.01)	deleterious(0.863)	NULL
NRXN3	9369	genome.wustl.edu	37	14	80164138	80164138	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004796.4	+1	reviewed	p.R888Q	1.000	191	0%	185	31.9%	1	0%	probably_damaging(0.969)	tolerated(0.46)	neutral(0.423)	NULL
SEL1L	6400	genome.wustl.edu	37	14	81943522	81943522	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005065.4	-1	validated	p.R727*	1.000	203	0%	218	26.6%	27	22.2%	-	-	-	NULL
SPATA7	55812	genome.wustl.edu	37	14	88892857	88892857	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018418.4	+1	reviewed	p.S218	0.013	60	0%	70	38.6%	3	66.6%	-	-	-	NULL
ZC3H14	79882	genome.wustl.edu	37	14	89038542	89038542	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024824.4	+1	validated	p.S135L	1.000	171	0%	178	23.6%	18	33.3%	probably_damaging(0.963)	deleterious(0.03)	deleterious(0.770)	NULL
EML5	161436	genome.wustl.edu	37	14	89087152	89087152	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_183387.2	-1	validated	p.S1774Y	1.000	406	0%	514	27.2%	0	-	probably_damaging(0.989)	deleterious(0.01)	deleterious(0.845)	HMMSmart_SM00320,superfamily_WD40 repeat-like
EML5	161436	genome.wustl.edu	37	14	89171223	89171223	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_183387.2	-1	validated	p.R678*	0.997	499	0%	553	17.2%	0	-	-	-	-	HMMPfam_HELP
CATSPERB	79820	genome.wustl.edu	37	14	92139327	92139327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024764.2	-1	validated	p.L338I	0.000	94	0%	85	14.1%	0	-	possibly_damaging(0.653)	tolerated(0.28)	neutral(0.261)	NULL
GOLGA5	9950	genome.wustl.edu	37	14	93263973	93263973	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005113.2	+1	reviewed	p.S64*	1.000	243	0%	278	21.6%	15	6.6%	-	-	-	NULL
GOLGA5	9950	genome.wustl.edu	37	14	93282758	93282758	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005113.2	+1	reviewed	p.E495K	0.995	96	0%	159	27.7%	36	27.7%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	superfamily_Prefoldin,HMMPfam_Golgin_A5
C14orf142	84520	genome.wustl.edu	37	14	93670072	93670072	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032490.4	-1	validated	p.F88	1.000	799	0.3%	959	25.7%	11	9%	benign(0.113)	-	-	NULL
PPP4R4	57718	genome.wustl.edu	37	14	94732161	94732161	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_058237.1	+1	reviewed	p.R772Q	1.000	226	0%	259	24.7%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
DICER1	23405	genome.wustl.edu	37	14	95590698	95590698	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030621.3	-1	reviewed	p.R404I	1.000	373	0%	374	21.1%	2	0%	probably_damaging(0.996)	tolerated(0.08)	deleterious(0.762)	superfamily_SSF52540
BCL11B	64919	genome.wustl.edu	37	14	99723818	99723818	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138576.2	-1	reviewed	p.E139D	1.000	116	0%	89	24.7%	0	-	probably_damaging(0.999)	tolerated(0.09)	deleterious(0.787)	NULL
HHIPL1	84439	genome.wustl.edu	37	14	100129234	100129234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001127258.1	+1	validated	p.E508D	1.000	81	0%	48	41.7%	0	-	probably_damaging(0.999)	deleterious(0.02)	deleterious(0.873)	superfamily_Soluble quinoprotein glucose dehydrogenase
DYNC1H1	1778	genome.wustl.edu	37	14	102452569	102452569	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001376.4	+1	reviewed	p.L669	0.949	35	0%	66	33.3%	11	0%	-	-	-	HMMPfam_DHC_N1
DYNC1H1	1778	genome.wustl.edu	37	14	102472356	102472356	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001376.4	+1	reviewed	p.Q1855	1.000	204	0%	214	24.8%	14	28.5%	-	-	-	NULL
MARK3	4140	genome.wustl.edu	37	14	103918265	103918265	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001128918.1	+1	validated	p.F119	1.000	416	0%	485	28.7%	12	33.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ADSSL1	122622	genome.wustl.edu	37	14	105207179	105207179	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_199165.1	+1	validated	p.F239L	1.000	199	0%	187	29.9%	0	-	benign(0.35)	tolerated(0.89)	neutral(0.111)	HMMPfam_Adenylsucc_synt,HMMSmart_Adenylsucc_synt,superfamily_SSF52540
IGHV3-15	28448	genome.wustl.edu	37	14	106610325	106610325	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000390603	-1	known	p.Y115	1.000	202	0%	195	21%	2	0%	-	-	-	HMMSmart_SM00406,HMMPfam_V-set,superfamily_Immunoglobulin
C15orf2	23742	genome.wustl.edu	37	15	24922158	24922158	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018958.2	+1	reviewed	p.L382V	0.000	126	0%	93	26.9%	0	-	probably_damaging(0.965)	-	-	NULL
ATP10A	57194	genome.wustl.edu	37	15	26026297	26026297	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024490.3	-1	reviewed	p.E175K	1.000	267	0%	225	17.3%	0	-	benign(0.356)	deleterious(0)	deleterious(0.557)	HMMPfam_E1-E2_ATPase,superfamily_SSF81653
ENSG00000206149	0	genome.wustl.edu	37	15	28886685	28886685	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000382946	+1	known	p.R472*	1.000	255	0%	288	6.9%	5	0%	-	-	-	NULL
RYR3	6263	genome.wustl.edu	37	15	33990188	33990188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001036.3	+1	validated	p.E2080D	1.000	320	0%	489	28.4%	0	-	benign(0)	-	-	HMMPfam_RYDR_ITPR
RYR3	6263	genome.wustl.edu	37	15	34040438	34040438	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001036.3	+1	validated	p.R2705*	1.000	194	0%	193	30.1%	0	-	-	-	-	NULL
AVEN	57099	genome.wustl.edu	37	15	34295372	34295372	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020371.2	-1	validated	p.E102D	1.000	275	0%	363	27%	4	50%	probably_damaging(0.987)	tolerated(0.2)	deleterious(0.485)	NULL
GOLGA8A	23015	genome.wustl.edu	37	15	34673684	34673684	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181077.3	-1	reviewed	p.E580D	0.832	202	0%	167	18.6%	14	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
RASGRP1	10125	genome.wustl.edu	37	15	38791059	38791059	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005739.3	-1	reviewed	p.E603	0.990	219	0%	229	20.1%	2	0%	-	-	-	NULL
EIF2AK4	440275	genome.wustl.edu	37	15	40259920	40259920	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001013703.2	+1	validated	p.R465C	1.000	260	0.4%	355	12.7%	7	42.8%	benign(0.113)	deleterious(0.05)	neutral(0.354)	HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PLCB2	5330	genome.wustl.edu	37	15	40585898	40585898	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004573.2	-1	validated	p.R697C	1.000	136	0%	144	24.3%	10	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CASC5	57082	genome.wustl.edu	37	15	40913841	40913841	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_170589.3	+1	validated	p.A486D	0.270	81	0%	89	31.5%	0	-	benign(0.013)	deleterious(0.01)	neutral(0.406)	NULL
CASC5	57082	genome.wustl.edu	37	15	40914529	40914529	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_170589.3	+1	validated	p.V715	0.077	187	0%	218	25.7%	0	-	-	-	-	NULL
SPINT1	6692	genome.wustl.edu	37	15	41137175	41137175	+	Silent	SNP	C	C	A	rs190902803	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181642.2	+1	reviewed	p.L141	0.012	19	0%	30	16.7%	135	6.6%	-	-	-	NULL
FAM92A1P1	729073	genome.wustl.edu	37	15	41456252	41456252	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000287660	+1	known	p.E195K	0.997	329	0%	339	31.9%	3	0%	-	-	-	HMMPfam_DUF1208
FAM92A1P1	729073	genome.wustl.edu	37	15	41456333	41456333	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000287660	+1	known	p.L222V	0.996	324	0%	340	28.8%	0	-	-	-	-	HMMPfam_DUF1208
MGA	23269	genome.wustl.edu	37	15	41988691	41988691	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080541.2	+1	validated	p.R495*	0.974	100	0%	86	31.4%	0	-	-	-	-	NULL
MGA	23269	genome.wustl.edu	37	15	42021428	42021428	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080541.2	+1	validated	p.R1242*	1.000	311	0%	403	25.6%	2	0%	-	-	-	NULL
PLA2G4E	123745	genome.wustl.edu	37	15	42279475	42279475	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080490.1	-1	provisional	p.E615*	0.930	195	0%	221	26.2%	0	-	-	-	-	HMMSmart_SM00022,superfamily_FabD/lysophospholipase-like
LRRC57	255252	genome.wustl.edu	37	15	42837298	42837298	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153260.2	-1	validated	p.R219*	1.000	233	0%	300	20%	14	28.5%	-	-	-	NULL
STARD9	57519	genome.wustl.edu	37	15	42977570	42977570	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001129482.3	+1	model	p.L1217R	0.000	74	1.4%	89	25.8%	0	-	probably_damaging(0.961)	-	-	NULL
TP53BP1	7158	genome.wustl.edu	37	15	43771698	43771698	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001141980.1	-1	validated	p.E229K	0.667	451	0%	493	17.4%	7	14.2%	possibly_damaging(0.611)	deleterious(0.02)	deleterious(0.595)	NULL
CTDSPL2	51496	genome.wustl.edu	37	15	44751374	44751374	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016396.2	+1	validated	p.K54N	1.000	132	0%	163	21.5%	4	0%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SPG11	80208	genome.wustl.edu	37	15	44921574	44921574	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025137.3	-1	reviewed	p.L583R	1.000	278	0%	289	29.1%	7	42.8%	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	NULL
SEMA6D	80031	genome.wustl.edu	37	15	48062819	48062819	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153618.1	+1	reviewed	p.R687*	0.998	159	0%	231	29.9%	0	-	-	-	-	NULL
C15orf33	196951	genome.wustl.edu	37	15	49833942	49833942	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152647.2	-1	validated	p.S270L	0.993	100	0%	149	35.6%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
SPPL2A	84888	genome.wustl.edu	37	15	51028310	51028310	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032802.3	-1	reviewed	p.R307Q	1.000	233	0%	292	28.8%	36	44.4%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
MYO5C	55930	genome.wustl.edu	37	15	52517650	52517650	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018728.2	-1	validated	p.K1096T	1.000	583	0%	662	26%	10	60%	benign(0.097)	tolerated(0.52)	neutral(0.016)	NULL
MYO5A	4644	genome.wustl.edu	37	15	52680085	52680085	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000259.3	-1	reviewed	p.L565I	1.000	294	0%	363	29.5%	0	-	probably_damaging(1)	deleterious(0.03)	deleterious(0.865)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
RFX7	64864	genome.wustl.edu	37	15	56435040	56435040	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022841.5	-1	validated	p.R113W	1.000	210	0%	289	22.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	"HMMPfam_RFX_DNA_binding,superfamily_""Winged helix"" DNA-binding domain"
GCOM1	145781	genome.wustl.edu	37	15	58004209	58004209	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001018090.1	+1	reviewed	p.S444	0.000	251	0%	323	26%	17	47%	-	-	-	NULL
VPS13C	54832	genome.wustl.edu	37	15	62219376	62219376	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020821.1	-1	validated	p.E2144K	0.275	187	0%	175	28.6%	4	25%	benign(0.001)	tolerated(0.99)	-	NULL
CILP	8483	genome.wustl.edu	37	15	65491253	65491253	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003613.3	-1	reviewed	p.I457	0.537	61	0%	57	21.1%	0	-	-	-	-	NULL
IGDCC3	9543	genome.wustl.edu	37	15	65628259	65628259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004884.3	-1	validated	p.V149M	0.572	179	0%	212	27.4%	0	-	benign(0.001)	tolerated(0.13)	neutral(0.253)	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
DENND4A	10260	genome.wustl.edu	37	15	66007900	66007900	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001144823.1	-1	validated	p.Q623H	0.998	228	0%	273	31.5%	2	50%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_dDENN,HMMSmart_SM00801
ITGA11	22801	genome.wustl.edu	37	15	68642968	68642968	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004439.1	-1	reviewed	p.I349	1.000	256	0%	252	28.6%	6	0%	-	-	-	HMMSmart_SM00327,superfamily_vWA-like,superfamily_Integrin alpha N-terminal domain
UACA	55075	genome.wustl.edu	37	15	70976721	70976721	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018003.2	-1	validated	p.G223C	1.000	233	0%	266	24.8%	11	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK
LRRC49	54839	genome.wustl.edu	37	15	71276466	71276466	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017691.2	+1	validated	p.R347*	1.000	182	0%	231	21.6%	2	0%	-	-	-	NULL
THSD4	79875	genome.wustl.edu	37	15	72020976	72020976	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024817.2	+1	provisional	p.F482L	1.000	328	0%	302	32.1%	5	0%	possibly_damaging(0.685)	tolerated(0.18)	neutral(0.300)	HMMPfam_ADAM_spacer1
NR2E3	10002	genome.wustl.edu	37	15	72105731	72105731	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014249.2	+1	reviewed	p.V250	1.000	84	0%	75	18.7%	0	-	-	-	-	HMMPfam_Hormone_recep,HMMSmart_SM00430,superfamily_Nuclear receptor ligand-binding domain
ARIH1	25820	genome.wustl.edu	37	15	72767192	72767192	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005744.3	+1	validated	p.G71D	1.000	13	0%	23	43.5%	0	-	unknown(0)	tolerated(0.07)	-	NULL
NEO1	4756	genome.wustl.edu	37	15	73408999	73408999	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002499.3	+1	validated	p.K83N	0.995	182	0%	210	31.9%	1	100%	benign(0)	tolerated(0.58)	neutral(0.005)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
NEO1	4756	genome.wustl.edu	37	15	73590698	73590698	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002499.3	+1	validated	p.R1304Q	1.000	127	0%	156	21.2%	17	35.2%	possibly_damaging(0.853)	tolerated(0.64)	neutral(0.332)	HMMPfam_Neogenin_C
LOC646791	646791	genome.wustl.edu	37	15	75614623	75614623	+	RNA	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XR_017650.3	-1	model	NULL	1.000	253	0%	288	16.7%	0	-	-	-	-	-
LOC646791	646791	genome.wustl.edu	37	15	75614793	75614793	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XR_017650.3	-1	model	NULL	0.995	244	0%	284	25.4%	0	-	-	-	-	-
FBXO22	26263	genome.wustl.edu	37	15	76225210	76225210	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_147188.1	+1	reviewed	p.V327I	0.974	529	0.2%	611	25.9%	41	48.7%	probably_damaging(0.998)	tolerated(0.12)	deleterious(0.735)	HMMPfam_FIST_C
SCAPER	49855	genome.wustl.edu	37	15	77176174	77176174	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000303521	-1	known	p.E50*	0.020	504	0%	591	18.4%	0	-	-	-	-	NULL
SGK269	79834	genome.wustl.edu	37	15	77473414	77473414	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024776.2	-1	validated	p.F285L	1.000	119	0%	98	22.4%	3	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
TBC1D2B	23102	genome.wustl.edu	37	15	78316665	78316665	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144572.1	-1	validated	p.E435K	1.000	112	0%	106	21.7%	4	0%	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	NULL
AP3B2	8120	genome.wustl.edu	37	15	83332688	83332688	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004644.3	-1	validated	p.K748	1.000	84	0%	76	18.4%	0	-	-	-	-	NULL
FSD2	123722	genome.wustl.edu	37	15	83455837	83455837	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001007122.2	-1	provisional	p.E102D	0.000	139	0%	103	32%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
SEC11A	23478	genome.wustl.edu	37	15	85230968	85230968	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014300.2	-1	provisional	p.L67F	1.000	293	0%	409	26.7%	84	26.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_LexA/Signal peptidase,HMMPfam_Peptidase_S24
ALPK3	57538	genome.wustl.edu	37	15	85383414	85383414	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020778.4	+1	validated	p.L504	0.747	97	0%	158	20.9%	0	-	-	-	-	NULL
ALPK3	57538	genome.wustl.edu	37	15	85383932	85383932	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020778.4	+1	validated	p.P676	0.000	48	0%	50	12%	0	-	-	-	-	NULL
ALPK3	57538	genome.wustl.edu	37	15	85401123	85401123	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020778.4	+1	validated	p.R1254C	0.855	13	0.000	9	0.667	0	-	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
ACAN	176	genome.wustl.edu	37	15	89402149	89402149	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013227.3	+1	reviewed	p.F1996	0.000	80	0%	73	23.3%	1	0%	-	-	-	NULL
ARRDC4	91947	genome.wustl.edu	37	15	98511279	98511279	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_183376.2	+1	validated	p.G186	1.000	317	0%	331	30.5%	2	0%	-	-	-	superfamily_E set domains
CERS3	204219	genome.wustl.edu	37	15	100943010	100943010	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178842.3	-1	validated	p.E354*	0.106	254	0%	338	25.7%	0	-	-	-	-	NULL
RAB11FIP3	9727	genome.wustl.edu	37	16	570795	570795	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014700.3	+1	validated	p.V743M	0.999	132	0%	133	22.6%	30	43.3%	probably_damaging(1)	tolerated(0.18)	deleterious(0.556)	HMMPfam_RBD-FIP
CACNA1H	8912	genome.wustl.edu	37	16	1262133	1262133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021098.2	+1	reviewed	p.R1585H	1.000	160	0%	127	33.1%	3	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
MAPK8IP3	23162	genome.wustl.edu	37	16	1798618	1798618	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015133.3	+1	reviewed	p.I370	0.368	120	0%	105	22.9%	7	57.1%	-	-	-	NULL
SRRM2	23524	genome.wustl.edu	37	16	2812431	2812431	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016333.3	+1	validated	p.R634	0.965	69	0%	72	25%	40	40%	-	-	-	NULL
MEFV	4210	genome.wustl.edu	37	16	3304380	3304380	+	Missense_Mutation	SNP	C	C	T	rs104895080		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000243.2	-1	reviewed	p.E230K	0.001	55	0%	45	35.6%	0	-	possibly_damaging(0.807)	deleterious(0.02)	deleterious(0.687)	NULL
ZNF597	146434	genome.wustl.edu	37	16	3490834	3490834	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152457.1	-1	provisional	p.E45*	0.021	169	0%	224	30.4%	3	100%	-	-	-	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
TRAP1	10131	genome.wustl.edu	37	16	3725388	3725388	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016292.2	-1	validated	p.T275	0.315	190	0%	188	27.1%	83	46.9%	-	-	-	superfamily_ATP_bd_ATPase,HMMPfam_HSP90
CREBBP	1387	genome.wustl.edu	37	16	3778738	3778738	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004380.2	-1	reviewed	p.R2104C	1.000	31	0%	42	28.6%	22	36.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Nuc_recept_coact,HMMPfam_Creb_binding
ADCY9	115	genome.wustl.edu	37	16	4163982	4163982	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001116.2	-1	reviewed	p.V488I	0.982	58	0%	64	28.1%	3	66.6%	probably_damaging(0.994)	tolerated(0.1)	deleterious(0.738)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
GLIS2	84662	genome.wustl.edu	37	16	4383409	4383409	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032575.2	+1	reviewed	p.L78	0.457	39	0%	32	46.9%	6	33.3%	-	-	-	NULL
UBN1	29855	genome.wustl.edu	37	16	4924648	4924648	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001079514.1	+1	validated	p.L746R	1.000	113	0.9%	111	18.9%	8	50%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
USP7	7874	genome.wustl.edu	37	16	8996318	8996318	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003470.2	-1	validated	p.R621	1.000	334	0%	367	23.2%	21	47.6%	-	-	-	NULL
ATF7IP2	80063	genome.wustl.edu	37	16	10565993	10565993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024997.2	+1	validated	p.S460F	1.000	251	0%	357	30%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
PRM3	58531	genome.wustl.edu	37	16	11367185	11367185	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021247.1	-1	provisional	p.A90T	0.000	50	0%	31	32.3%	0	-	benign(0.355)	tolerated(0.12)	neutral(0.373)	NULL
GSPT1	2935	genome.wustl.edu	37	16	11979060	11979060	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002094.3	-1	validated	p.L442P	1.000	307	0%	369	24.9%	42	26.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_Translation proteins,superfamily_P-loop containing nucleoside triphosphate hydrolases
CPPED1	55313	genome.wustl.edu	37	16	12875153	12875153	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018340.2	-1	validated	p.E60K	0.999	185	0%	171	26.9%	51	33.3%	benign(0.005)	tolerated(0.24)	neutral(0.037)	superfamily_Metallo-dependent phosphatases
NOMO3	408050	genome.wustl.edu	37	16	16330822	16330822	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004067.2	+1	reviewed	p.Y77S	1.000	742	0%	994	22.1%	8	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ACSM1	116285	genome.wustl.edu	37	16	20696520	20696520	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_052956.2	-1	validated	p.R133Q	0.960	195	0%	191	31.9%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_AMP-binding,superfamily_Acetyl-CoA synthetase-like
ACSM3	6296	genome.wustl.edu	37	16	20807743	20807743	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005622.3	+1	validated	p.E536*	1.000	310	0%	405	24.2%	56	28.5%	-	-	-	superfamily_Acetyl-CoA synthetase-like
ERI2	112479	genome.wustl.edu	37	16	20812539	20812539	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142725.1	-1	validated	p.F149C	1.000	115	0%	164	15.9%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00479,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T
DNAH3	55567	genome.wustl.edu	37	16	21123388	21123388	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017539.1	-1	provisional	p.L616V	0.913	211	0%	263	20.9%	0	-	probably_damaging(0.999)	deleterious(0.05)	deleterious(0.836)	NULL
RBBP6	5930	genome.wustl.edu	37	16	24578822	24578822	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006910.4	+1	reviewed	p.E650*	1.000	185	0%	123	17.1%	2	0%	-	-	-	NULL
NSMCE1	197370	genome.wustl.edu	37	16	27236549	27236549	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145080.3	-1	validated	p.D244N	0.996	94	0%	87	42.5%	135	28.1%	benign(0)	tolerated(0.67)	neutral(0.003)	superfamily_SSF57850
RRN3P2	653390	genome.wustl.edu	37	16	29097584	29097584	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000415221	+1	known	p.K194N	1.000	105	0%	113	14.2%	1	0%	possibly_damaging(0.815)	deleterious(0)	deleterious(0.752)	NULL
ZNF48	197407	genome.wustl.edu	37	16	30409697	30409697	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152652.1	+1	provisional	p.R376C	0.162	46	0%	38	21.1%	7	28.5%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ITGAL	3683	genome.wustl.edu	37	16	30531243	30531243	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002209.2	+1	reviewed	p.I1098	0.029	97	0%	107	22.4%	14	0%	-	-	-	NULL
RNF40	9810	genome.wustl.edu	37	16	30785346	30785346	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014771.2	+1	reviewed	p.R973W	1.000	78	0%	70	34.3%	40	30%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
ITGAM	3684	genome.wustl.edu	37	16	31284813	31284813	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000632.3	+1	reviewed	p.E278*	0.000	141	0%	172	32.6%	2	0%	-	-	-	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318
ITGAX	3687	genome.wustl.edu	37	16	31390893	31390893	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000887.3	+1	reviewed	p.E932K	0.043	104	0%	165	26.7%	9	0%	benign(0.31)	deleterious(0)	deleterious(0.541)	HMMPfam_Integrin_alpha2
LOC100289574	100289574	genome.wustl.edu	37	16	32192022	32192022	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002343438.1	-1	model	p.E62*	1.000	63	0%	70	17.1%	0	-	-	-	-	NULL
NETO2	81831	genome.wustl.edu	37	16	47143460	47143460	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018092.3	-1	reviewed	p.R273*	0.997	225	0%	227	24.2%	1	0%	-	-	-	HMMSmart_SM00042,superfamily_Spermadhesin CUB domain
ENSG00000247487	0	genome.wustl.edu	37	16	48385480	48385480	+	RNA	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000501305	-1	known	NULL	0.000	100	0%	147	26.5%	0	-	-	-	-	-
ZNF423	23090	genome.wustl.edu	37	16	49670423	49670423	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015069.2	-1	reviewed	p.D880	0.923	74	0%	55	25.5%	2	50%	-	-	-	NULL
SNX20	124460	genome.wustl.edu	37	16	50707974	50707974	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182854.2	-1	validated	p.I98	0.993	28	0%	28	25%	3	0%	-	-	-	HMMPfam_PX,HMMSmart_SM00312,superfamily_PX domain
CHD9	80205	genome.wustl.edu	37	16	53190219	53190219	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025134.4	+1	validated	p.Q73R	1.000	216	0%	248	29.4%	0	-	possibly_damaging(0.643)	deleterious(0)	deleterious(0.670)	NULL
C16orf57	79650	genome.wustl.edu	37	16	58048180	58048180	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024598.2	+1	validated	p.F151L	1.000	297	0%	310	23.9%	30	33.3%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_HVSL
CNOT1	23019	genome.wustl.edu	37	16	58572108	58572108	+	Missense_Mutation	SNP	C	C	T	rs185344213	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016284.3	-1	validated	p.R1733H	1.000	229	0.4%	330	27.9%	20	40%	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	NULL
CNOT1	23019	genome.wustl.edu	37	16	58615301	58615301	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016284.3	-1	validated	p.E388G	1.000	320	0%	429	26.3%	16	25%	possibly_damaging(0.692)	tolerated(0.1)	deleterious(0.534)	NULL
CDH8	1006	genome.wustl.edu	37	16	61761243	61761243	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000394178	-1	known	p.H345R	0.000	50	0%	33	18.2%	0	-	-	-	-	HMMSmart_CA,superfamily_Cadherin
CDH8	1006	genome.wustl.edu	37	16	61891113	61891113	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001796.2	-1	reviewed	p.D193N	1.000	200	0%	201	21.9%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_Cadherin,HMMSmart_CA,superfamily_Cadherin
DYNC1LI2	1783	genome.wustl.edu	37	16	66761704	66761704	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006141.2	-1	validated	p.S383F	1.000	141	0%	168	28%	20	40%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_DLIC
CCDC79	283847	genome.wustl.edu	37	16	66803886	66803886	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001136505.1	-1	provisional	p.K533N	0.011	210	0%	269	25.3%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
C16orf70	80262	genome.wustl.edu	37	16	67166366	67166366	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025187.3	+1	provisional	p.S98Y	1.000	167	0%	191	17.8%	5	40%	probably_damaging(0.975)	deleterious(0.01)	deleterious(0.823)	HMMPfam_UPF0183
KCTD19	146212	genome.wustl.edu	37	16	67338376	67338376	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001100915.1	-1	provisional	p.W133*	1.000	324	0%	333	24.3%	0	-	-	-	-	NULL
LCAT	3931	genome.wustl.edu	37	16	67974285	67974285	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000229.1	-1	reviewed	p.A282V	0.000	169	0%	167	25.7%	5	20%	benign(0)	tolerated(0.51)	neutral(0.009)	HMMPfam_LACT,superfamily_alpha/beta-Hydrolases
SLC12A4	6560	genome.wustl.edu	37	16	67985134	67985134	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005072.4	-1	validated	p.P402	0.000	133	0%	129	17.8%	17	17.6%	-	-	-	HMMPfam_AA_permease
TAT	6898	genome.wustl.edu	37	16	71602173	71602173	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000353.2	-1	reviewed	p.P413	0.865	55	0%	51	25.5%	0	-	-	-	-	HMMPfam_Aminotran_1_2,superfamily_PLP-dependent transferases
PKD1L3	342372	genome.wustl.edu	37	16	72007285	72007285	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000335106	-1	known	p.A631T	0.073	122	0%	107	37.4%	0	-	-	-	-	HMMPfam_GPS,HMMSmart_SM00303
CNTNAP4	85445	genome.wustl.edu	37	16	76486528	76486528	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138994.3	+1	validated	p.R326*	1.000	320	0%	254	26.8%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
ADAMTS18	170692	genome.wustl.edu	37	16	77356315	77356315	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_199355.2	-1	reviewed	p.F694C	1.000	424	0%	475	27.2%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
PKD1L2	114780	genome.wustl.edu	37	16	81213293	81213293	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001076780.1	-1	reviewed	p.S739	0.027	186	0%	254	29.9%	0	-	-	-	-	NULL
SLC38A8	146167	genome.wustl.edu	37	16	84046654	84046654	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080442.1	-1	provisional	p.L389S	1.000	117	0%	144	24.3%	0	-	probably_damaging(0.986)	deleterious(0)	deleterious(0.879)	HMMPfam_Aa_trans
USP10	9100	genome.wustl.edu	37	16	84773960	84773960	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005153.2	+1	reviewed	p.D46N	0.264	353	0%	416	23.3%	3	0%	benign(0)	tolerated(0.55)	neutral(0.007)	NULL
USP10	9100	genome.wustl.edu	37	16	84801873	84801873	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005153.2	+1	reviewed	p.Q636R	1.000	172	0%	211	29.4%	29	44.8%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_UCH,superfamily_SSF54001
IRF8	3394	genome.wustl.edu	37	16	85942746	85942746	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002163.2	+1	reviewed	p.V109I	1.000	122	0%	122	23%	8	0%	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_IRF,HMMSmart_IRF,superfamily_SSF46785
KLHDC4	54758	genome.wustl.edu	37	16	87799428	87799428	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017566.3	-1	validated	p.K23N	1.000	166	0%	168	22.6%	6	16.6%	benign(0.038)	-	-	NULL
CBFA2T3	863	genome.wustl.edu	37	16	88964558	88964558	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005187.4	-1	reviewed	p.R103*	0.998	243	0%	239	24.7%	1	0%	-	-	-	NULL
ABR	29	genome.wustl.edu	37	17	994977	994977	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021962.2	-1	reviewed	p.F153L	1.000	242	0%	219	40.6%	9	55.5%	possibly_damaging(0.596)	deleterious(0)	deleterious(0.650)	HMMPfam_RhoGEF,HMMSmart_SM00325,superfamily_DBL homology domain (DH-domain)
OR1A2	26189	genome.wustl.edu	37	17	3101421	3101421	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012352.1	+1	provisional	p.V203	0.000	160	0%	149	41.6%	0	-	-	-	-	HMMPfam_7tm_1,superfamily_SSF81321
TRPV3	162514	genome.wustl.edu	37	17	3431412	3431412	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145068.2	-1	reviewed	p.P470	0.936	51	0%	30	46.7%	0	-	-	-	-	NULL
TAX1BP3	30851	genome.wustl.edu	37	17	3568057	3568057	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014604.2	-1	validated	p.E25	1.000	179	0%	94	42.6%	82	57.3%	-	-	-	HMMPfam_PDZ,superfamily_PDZ domain-like
ZFP3	124961	genome.wustl.edu	37	17	4995171	4995171	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153018.2	+1	validated	p.E124	0.000	109	0%	70	28.6%	0	-	-	-	-	NULL
ZNF594	84622	genome.wustl.edu	37	17	5086692	5086692	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032530.1	-1	validated	p.R287I	0.985	179	0%	117	35.9%	0	-	probably_damaging(0.984)	deleterious(0.04)	deleterious(0.779)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
KIAA0753	9851	genome.wustl.edu	37	17	6531826	6531826	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014804.2	-1	validated	p.R110Q	1.000	252	0%	207	36.7%	1	0%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	NULL
CLEC10A	10462	genome.wustl.edu	37	17	6979444	6979444	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182906.2	-1	reviewed	p.T127M	0.000	58	0%	57	33.3%	4	0%	probably_damaging(0.979)	deleterious(0.05)	deleterious(0.767)	HMMPfam_Lectin_N
NEURL4	84461	genome.wustl.edu	37	17	7219612	7219612	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032442.2	-1	validated	p.A1507T	1.000	67	0%	50	34%	3	66.6%	benign(0.309)	deleterious(0.01)	deleterious(0.502)	NULL
TP53	7157	genome.wustl.edu	37	17	7577514	7577515	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000546.4	-1	reviewed	p.T256fs	0.998:1.000	-	-	-	-	-	-	-	-	-	superfamily_p53-like transcription factors,HMMPfam_P53
TP53	7157	genome.wustl.edu	37	17	7578223	7578223	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000546.4	-1	reviewed	p.R209I	0.000	411	0.2%	269	39%	4	0%	benign(0.012)	tolerated(0.13)	neutral(0.253)	superfamily_p53-like transcription factors,HMMPfam_P53
DNAH2	146754	genome.wustl.edu	37	17	7678602	7678602	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020877.2	+1	validated	p.S1588L	1.000	275	0%	227	38.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_DHC_N2
CHD3	1107	genome.wustl.edu	37	17	7811726	7811726	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005271.2	+1	reviewed	p.H1779R	1.000	227	0%	185	29.7%	56	60.7%	probably_damaging(0.998)	-	-	NULL
GAS7	8522	genome.wustl.edu	37	17	9843493	9843493	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_201433.1	-1	reviewed	p.A252	0.956	336	0%	361	19.1%	5	0%	-	-	-	HMMPfam_FCH,HMMSmart_SM00055
MYH4	4622	genome.wustl.edu	37	17	10348121	10348121	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017533.2	-1	validated	p.L1854	1.000	570	0%	463	38.9%	0	-	-	-	-	HMMPfam_Myosin_tail_1
MYH2	4620	genome.wustl.edu	37	17	10434982	10434982	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001100112.1	-1	reviewed	p.E889*	1.000	486	0%	284	32.4%	0	-	-	-	-	NULL
SHISA6	388336	genome.wustl.edu	37	17	11166703	11166703	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_207386.3	+1	validated	p.R220I	1.000	213	0%	198	29.8%	2	0%	benign(0.196)	tolerated(0.05)	neutral(0.364)	NULL
MYOCD	93649	genome.wustl.edu	37	17	12655756	12655756	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153604.2	+1	reviewed	p.R384Q	1.000	130	0%	90	33.3%	0	-	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	HMMPfam_SAP,HMMSmart_SM00513,superfamily_SAP domain
MYOCD	93649	genome.wustl.edu	37	17	12666670	12666670	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153604.2	+1	reviewed	p.F842L	0.996	149	0%	111	40.5%	1	0%	benign(0.001)	tolerated(1)	-	NULL
ENSG00000251537	0	genome.wustl.edu	37	17	15517025	15517025	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000455584	-1	known	p.A626V	0.711	75	0%	41	26.8%	0	-	-	-	-	HMMPfam_F-box,superfamily_F-box domain
ZNF286A	57335	genome.wustl.edu	37	17	15619927	15619927	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001130842.1	+1	validated	p.L297I	1.000	250	0%	192	40.6%	1	100%	possibly_damaging(0.942)	tolerated(0.32)	neutral(0.411)	superfamily_SSF57667
ZNF286A	57335	genome.wustl.edu	37	17	15620327	15620327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001130842.1	+1	validated	p.R430I	1.000	339	0%	274	32.5%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
CCDC144A	9720	genome.wustl.edu	37	17	16612726	16612726	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014695.1	+1	provisional	p.K452T	0.177	565	0%	514	37%	0	-	possibly_damaging(0.931)	deleterious(0)	deleterious(0.822)	NULL
FLII	2314	genome.wustl.edu	37	17	18150106	18150106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002018.2	-1	reviewed	p.K951N	0.329	328	0%	303	15.8%	60	38.3%	benign(0.014)	tolerated(0.46)	neutral(0.013)	HMMSmart_GEL,superfamily_SSF55753
FBXW10	10517	genome.wustl.edu	37	17	18675846	18675846	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031456.3	+1	validated	p.N710D	0.227	171	0%	218	35.8%	0	-	possibly_damaging(0.496)	tolerated(0.33)	neutral(0.190)	NULL
KIAA0100	9703	genome.wustl.edu	37	17	26948070	26948070	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014680.2	-1	validated	p.T1726	0.922	349	0%	226	35.8%	32	43.7%	-	-	-	HMMPfam_Apt1
ANKRD13B	124930	genome.wustl.edu	37	17	27939150	27939150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152345.4	+1	validated	p.W373R	1.000	161	0%	80	27.5%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
ATAD5	79915	genome.wustl.edu	37	17	29203538	29203538	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024857.3	+1	provisional	p.E1252*	1.000	140	0%	98	34.7%	0	-	-	-	-	HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
NF1	4763	genome.wustl.edu	37	17	29661915	29661915	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001042492.2	+1	reviewed	p.R1958C	1.000	277	0%	222	27.9%	2	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
CCT6B	10693	genome.wustl.edu	37	17	33269591	33269591	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006584.2	-1	reviewed	p.F266C	1.000	355	0%	310	38.4%	1	100%	possibly_damaging(0.935)	deleterious(0)	deleterious(0.825)	HMMPfam_Cpn60_TCP1,superfamily_GroEL equatorial domain-like,superfamily_GroEL apical domain-like,superfamily_GroEL-intermediate domain like
SLFN14	342618	genome.wustl.edu	37	17	33875395	33875395	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001129820.1	-1	provisional	p.F868I	0.983	180	0%	151	37.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
TAF15	8148	genome.wustl.edu	37	17	34147348	34147348	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_139215.1	+1	reviewed	p.S66F	0.995	269	0%	258	32.2%	46	45.6%	unknown(0)	deleterious(0.02)	-	NULL
TOP2A	7153	genome.wustl.edu	37	17	38557146	38557146	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001067.2	-1	reviewed	p.N874H	1.000	299	0%	265	29.4%	9	77.7%	benign(0.053)	tolerated(0.12)	neutral(0.264)	HMMPfam_DNA_topoisoIV,HMMSmart_SM00434,superfamily_Type II DNA topoisomerase
KRT20	54474	genome.wustl.edu	37	17	39036927	39036927	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019010.1	-1	reviewed	p.L190S	0.998	397	0%	365	37%	0	-	probably_damaging(0.992)	deleterious(0)	deleterious(0.892)	HMMPfam_Filament
KLHL11	55175	genome.wustl.edu	37	17	40010785	40010785	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018143.1	-1	provisional	p.S445Y	1.000	154	0%	124	30.6%	0	-	benign(0.025)	deleterious(0.05)	neutral(0.346)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
STAT3	6774	genome.wustl.edu	37	17	40476865	40476865	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_139276.2	-1	reviewed	e16-1	1.000	196	0%	136	20.6%	1	100%	-	-	-	-
PTRF	284119	genome.wustl.edu	37	17	40574937	40574937	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012232.5	-1	reviewed	p.K60T	1.000	65	0%	27	40.7%	22	18.1%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
BRCA1	672	genome.wustl.edu	37	17	41245616	41245616	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007294.3	-1	reviewed	p.C644W	0.861	193	0%	174	20.1%	0	-	benign(0.003)	tolerated(0.06)	neutral(0.323)	NULL
CD300LG	146894	genome.wustl.edu	37	17	41931263	41931263	+	Silent	SNP	C	C	T	rs149330626	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145273.3	+1	validated	p.Y190	0.000	114	0%	98	25.5%	0	-	-	-	-	NULL
GPATCH8	23131	genome.wustl.edu	37	17	42476032	42476032	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001002909.1	-1	validated	p.S1138Y	1.000	154	0%	83	42.2%	3	0%	probably_damaging(0.996)	deleterious(0.01)	deleterious(0.867)	NULL
ARHGAP27	201176	genome.wustl.edu	37	17	43481984	43481984	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_199282.2	-1	validated	p.R97*	0.043	151	0%	121	39.7%	8	62.5%	-	-	-	HMMPfam_WW,HMMSmart_SM00456
DLX4	1748	genome.wustl.edu	37	17	48046840	48046840	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138281.2	+1	reviewed	p.S3Y	0.995	29	0%	28	42.9%	0	-	possibly_damaging(0.888)	deleterious(0)	deleterious(0.792)	NULL
MYCBPAP	84073	genome.wustl.edu	37	17	48603445	48603445	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032133.4	+1	validated	p.N705K	0.000	48	0%	28	50%	0	-	benign(0.001)	tolerated(0.31)	neutral(0.027)	NULL
RNF43	54894	genome.wustl.edu	37	17	56436128	56436128	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017763.4	-1	validated	p.R337*	0.989	35	0%	38	42.1%	11	90.9%	-	-	-	NULL
PPM1E	22843	genome.wustl.edu	37	17	57057431	57057431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014906.3	+1	reviewed	p.G436D	1.000	193	0%	168	36.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
SMG8	55181	genome.wustl.edu	37	17	57290132	57290132	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018149.6	+1	validated	p.F650V	1.000	87	0%	76	39.5%	2	100%	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	HMMPfam_DUF2146
GDPD1	284161	genome.wustl.edu	37	17	57334483	57334483	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182569.3	+1	validated	p.A123V	0.976	218	0%	137	29.9%	3	66.6%	benign(0.048)	deleterious(0.01)	neutral(0.409)	HMMPfam_GDPD,superfamily_PLC-like phosphodiesterases
CLTC	1213	genome.wustl.edu	37	17	57746246	57746246	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004859.3	+1	reviewed	p.R746I	1.000	423	0.2%	368	40.8%	20	65%	probably_damaging(0.989)	deleterious(0)	deleterious(0.884)	HMMPfam_Clathrin,HMMSmart_SM00299,superfamily_ARM repeat,superfamily_Protein prenylyltransferase
PTRH2	51651	genome.wustl.edu	37	17	57775125	57775125	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016077.3	-1	validated	p.R72Q	1.000	212	0%	202	31.7%	18	66.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PTH2,superfamily_Peptidyl-tRNA hydrolase II
TANC2	26115	genome.wustl.edu	37	17	61499101	61499101	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025185.3	+1	validated	p.Y1920D	1.000	131	0%	80	36.2%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
DCAF7	10238	genome.wustl.edu	37	17	61628172	61628172	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000310827	+1	known	p.N45S	1.000	90	0%	62	27.4%	10	40%	probably_damaging(0.975)	deleterious(0)	deleterious(0.861)	superfamily_WD40 repeat-like
FTSJ3	117246	genome.wustl.edu	37	17	61898986	61898986	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017647.3	-1	reviewed	p.I538	0.629	173	0%	119	43.7%	13	23%	-	-	-	NULL
CEP112	201134	genome.wustl.edu	37	17	64092437	64092437	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145036.3	-1	validated	p.K234E	0.655	307	0%	286	13.3%	0	-	possibly_damaging(0.751)	deleterious(0.03)	deleterious(0.640)	NULL
ABCA10	10349	genome.wustl.edu	37	17	67148281	67148281	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_080282.3	-1	reviewed	p.D1434N	0.999	545	0%	367	36.5%	0	-	benign(0.309)	tolerated(0.74)	neutral(0.098)	superfamily_P-loop containing nucleoside triphosphate hydrolases
SDK2	54549	genome.wustl.edu	37	17	71361434	71361434	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001144952.1	-1	provisional	p.G1756	1.000	52	0%	36	30.6%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
SEPT9	10801	genome.wustl.edu	37	17	75494650	75494650	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001113491.1	+1	reviewed	p.F557	0.994	33	0%	62	32.3%	92	33.6%	-	-	-	HMMPfam_Septin
DNAH17	8632	genome.wustl.edu	37	17	76440797	76440797	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000389840	-1	known	p.S3792L	0.997	148	0%	102	37.3%	0	-	benign(0.024)	tolerated(0.43)	neutral(0.014)	HMMPfam_Dynein_heavy
RNF213	57674	genome.wustl.edu	37	17	78305865	78305865	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000508628	+1	known	p.D1193Y	0.007	121	0%	91	41.8%	1	0%	possibly_damaging(0.951)	deleterious(0.01)	deleterious(0.800)	NULL
L3MBTL4	91133	genome.wustl.edu	37	18	6241439	6241439	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173464.3	-1	validated	p.K157T	1.000	167	0%	207	29.5%	2	0%	benign(0.008)	tolerated(0.26)	neutral(0.034)	HMMPfam_MBT,superfamily_SSF63748
LAMA1	284217	genome.wustl.edu	37	18	6964761	6964761	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005559.2	-1	validated	p.E2413*	1.000	319	0%	317	24.6%	0	-	-	-	-	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
PTPRM	5797	genome.wustl.edu	37	18	8143749	8143749	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001105244.1	+1	reviewed	p.L758I	1.000	490	0%	509	23.8%	5	0%	probably_damaging(0.994)	tolerated(0.18)	deleterious(0.508)	NULL
ANKRD12	23253	genome.wustl.edu	37	18	9258516	9258516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015208.3	+1	validated	p.L1751I	0.819	266	0%	336	31%	9	22.2%	possibly_damaging(0.485)	tolerated(0.29)	neutral(0.190)	superfamily_Ankyrin repeat
TXNDC2	84203	genome.wustl.edu	37	18	9887029	9887029	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098529.1	+1	validated	p.E185*	0.005	395	0%	509	26.5%	1	0%	-	-	-	NULL
NAPG	8774	genome.wustl.edu	37	18	10540009	10540009	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003826.2	+1	reviewed	p.E131D	0.979	205	0%	255	30.6%	10	70%	benign(0.002)	tolerated(0.34)	neutral(0.023)	superfamily_TPR-like
CEP192	55125	genome.wustl.edu	37	18	13008504	13008504	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000506447	+1	known	p.A114T	0.005	150	0%	146	21.9%	1	0%	possibly_damaging(0.46)	tolerated(0.07)	deleterious(0.470)	NULL
C18orf1	753	genome.wustl.edu	37	18	13645234	13645234	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181481.3	+1	validated	p.D167Y	0.999	146	0%	124	18.5%	12	16.6%	probably_damaging(0.982)	deleterious(0.01)	deleterious(0.832)	NULL
ANKRD30B	374860	genome.wustl.edu	37	18	14796363	14796363	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145029.1	+1	validated	p.S626P	0.015	464	0%	545	24%	0	-	unknown(0)	-	-	NULL
ESCO1	114799	genome.wustl.edu	37	18	19144267	19144267	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_052911.2	-1	validated	p.R573Q	0.997	363	0.3%	410	24.4%	6	33.3%	benign(0.001)	tolerated(0.18)	neutral(0.056)	NULL
CABLES1	91768	genome.wustl.edu	37	18	20837359	20837359	+	RNA	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NR_023359.1	+1	validated	NULL	0.000	88	0%	79	16.5%	9	22.2%	-	-	-	-
RIOK3	8780	genome.wustl.edu	37	18	21043000	21043000	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003831.3	+1	reviewed	p.E46*	1.000	329	0%	380	34.5%	9	55.5%	-	-	-	NULL
LAMA3	3909	genome.wustl.edu	37	18	21501446	21501446	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198129.1	+1	reviewed	p.R2692C	0.000	309	0%	337	22.6%	6	50%	possibly_damaging(0.504)	deleterious(0)	deleterious(0.613)	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2
IMPACT	55364	genome.wustl.edu	37	18	22008856	22008856	+	Silent	SNP	A	A	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018439.3	+1	validated	p.P63	0.995	360	0%	530	29.8%	11	45.4%	-	-	-	HMMPfam_RWD,HMMSmart_SM00591,superfamily_UBC-like
CHST9	83539	genome.wustl.edu	37	18	24496869	24496869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031422.4	-1	validated	p.R229I	1.000	390	0%	468	25.4%	2	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Sulfotransfer_2
DSC3	1825	genome.wustl.edu	37	18	28610942	28610942	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001941.3	-1	reviewed	p.K117N	0.998	251	0%	283	25.4%	0	-	benign(0.222)	tolerated(0.49)	neutral(0.033)	superfamily_Cadherin-like
DSG1	1828	genome.wustl.edu	37	18	28934983	28934983	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001942.2	+1	reviewed	p.E942K	0.860	205	0%	203	21.2%	0	-	possibly_damaging(0.818)	tolerated(0.16)	neutral(0.368)	NULL
KLHL14	57565	genome.wustl.edu	37	18	30260208	30260208	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020805.1	-1	provisional	p.M504I	1.000	453	0%	494	25.7%	7	14.2%	possibly_damaging(0.612)	deleterious(0.01)	deleterious(0.618)	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central
ASXL3	80816	genome.wustl.edu	37	18	31325115	31325115	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030632.1	+1	provisional	p.R1768I	0.987	97	0%	77	24.7%	0	-	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	NULL
NOL4	8715	genome.wustl.edu	37	18	31673477	31673477	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003787.3	-1	validated	p.L242I	1.000	336	0%	417	29.3%	0	-	possibly_damaging(0.882)	tolerated(0.2)	neutral(0.393)	NULL
LOXHD1	125336	genome.wustl.edu	37	18	44122784	44122784	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144612.6	-1	reviewed	p.S940	0.411	204	1%	169	20.7%	0	-	-	-	-	HMMPfam_PLAT,HMMSmart_LH2,superfamily_Lipase_LipOase
SMAD2	4087	genome.wustl.edu	37	18	45375016	45375016	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001003652.2	-1	reviewed	p.S276L	1.000	222	0%	203	20.2%	21	23.8%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MH2,HMMSmart_SM00524,superfamily_SMAD/FHA domain
DYM	54808	genome.wustl.edu	37	18	46570519	46570519	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017653.3	-1	reviewed	p.F639C	1.000	231	0%	182	28.6%	37	37.8%	probably_damaging(0.977)	deleterious(0)	deleterious(0.863)	HMMPfam_Dymeclin
DCC	1630	genome.wustl.edu	37	18	50734114	50734114	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005215.3	+1	reviewed	p.L596	0.993	461	0.2%	509	25.5%	0	-	-	-	-	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
C18orf54	162681	genome.wustl.edu	37	18	51888227	51888227	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173529.4	+1	validated	p.K166N	0.061	153	0%	201	16.4%	0	-	benign(0.002)	tolerated(0.5)	neutral(0.010)	NULL
WDR7	23335	genome.wustl.edu	37	18	54424048	54424048	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015285.2	+1	reviewed	p.L742I	1.000	207	0%	205	25.9%	4	25%	benign(0.103)	tolerated(0.2)	neutral(0.057)	NULL
SERPINB3	6317	genome.wustl.edu	37	18	61324080	61324080	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006919.2	-1	validated	p.I251	0.000	490	0%	551	28.7%	0	-	-	-	-	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins
CDH19	28513	genome.wustl.edu	37	18	64218359	64218359	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021153.2	-1	reviewed	p.V249	1.000	169	0%	162	28.4%	0	-	-	-	-	HMMSmart_CA,PatternScan_CADHERIN_1,superfamily_Cadherin
DSEL	92126	genome.wustl.edu	37	18	65181427	65181427	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032160.2	-1	validated	p.V150A	0.996	120	0%	141	35.5%	0	-	benign(0)	tolerated(0.78)	neutral(0.001)	NULL
CNDP2	55748	genome.wustl.edu	37	18	72180885	72180885	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018235.2	+1	validated	p.D278	0.007	64	0%	65	18.5%	195	43%	-	-	-	HMMPfam_Peptidase_M20,HMMPfam_M20_dimer,superfamily_Peptidase_M20_dimer,superfamily_SSF53187
TSHZ1	10194	genome.wustl.edu	37	18	73000272	73000272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005786.4	+1	reviewed	p.F925L	1.000	206	0%	235	16.6%	15	26.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TSHZ1	10194	genome.wustl.edu	37	18	73000324	73000324	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005786.4	+1	reviewed	p.H943N	1.000	169	0%	202	16.8%	21	14.2%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
THEG	51298	genome.wustl.edu	37	19	367082	367082	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016585.3	-1	reviewed	p.R299H	0.307	378	0%	391	19.2%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMSmart_SM00705
DOT1L	84444	genome.wustl.edu	37	19	2225435	2225435	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000440640	+1	known	p.R1002Q	0.909	216	0%	255	24.7%	6	0%	-	-	-	NULL
PLIN4	729359	genome.wustl.edu	37	19	4511980	4511980	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080400.1	-1	provisional	p.K650N	0.639	327	0%	292	17.8%	0	-	probably_damaging(1)	tolerated(0.17)	deleterious(0.559)	NULL
FUT6	2528	genome.wustl.edu	37	19	5831808	5831808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000150.2	-1	reviewed	p.E257D	1.000	274	0%	217	20.3%	13	61.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Glyco_transf_10
EMR1	2015	genome.wustl.edu	37	19	6916286	6916286	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001974.3	+1	reviewed	p.E443*	0.033	196	0%	276	28.3%	0	-	-	-	-	superfamily_Family A G protein-coupled receptor-like
CAMSAP3	57662	genome.wustl.edu	37	19	7676960	7676960	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080429.2	+1	validated	p.S554	0.003	104	0%	96	25%	14	50%	-	-	-	NULL
CLEC4M	10332	genome.wustl.edu	37	19	7828144	7828144	+	RNA	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NR_026707.1	+1	reviewed	NULL	0.000	130	0.8%	139	31.7%	0	-	-	-	-	-
HNRNPM	4670	genome.wustl.edu	37	19	8509930	8509930	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005968.3	+1	validated	p.I16	0.990	45	0%	61	31.1%	37	21.6%	-	-	-	NULL
MYO1F	4542	genome.wustl.edu	37	19	8595116	8595116	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012335.3	-1	validated	p.F764	0.741	58	0%	52	28.8%	13	0%	-	-	-	HMMPfam_Myosin_TH1
ADAMTS10	81794	genome.wustl.edu	37	19	8662189	8662189	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030957.2	-1	reviewed	p.F275V	1.000	211	0%	220	27.3%	1	0%	possibly_damaging(0.804)	deleterious(0)	deleterious(0.747)	HMMPfam_Reprolysin,superfamily_SSF55486
MUC16	94025	genome.wustl.edu	37	19	9056817	9056817	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024690.2	-1	validated	p.S10210*	0.000	336	0%	462	21.6%	3	33.3%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9057302	9057302	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024690.2	-1	validated	p.F10048	0.000	209	0%	261	27.6%	3	100%	-	-	-	NULL
MUC16	94025	genome.wustl.edu	37	19	9070449	9070449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024690.2	-1	validated	p.S5666Y	0.051	523	0%	646	25.4%	1	0%	unknown(0)	-	-	NULL
OR7G3	390883	genome.wustl.edu	37	19	9237199	9237199	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001001958.1	-1	provisional	p.L143R	0.000	74	0%	95	29.5%	0	-	possibly_damaging(0.927)	deleterious(0.02)	deleterious(0.758)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF177	7730	genome.wustl.edu	37	19	9492421	9492421	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003451.2	+1	validated	p.R312*	0.028	154	0%	218	26.1%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF560	147741	genome.wustl.edu	37	19	9577519	9577519	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152476.2	-1	validated	p.R702C	0.227	207	0%	194	27.3%	0	-	benign(0.002)	deleterious(0.01)	neutral(0.406)	superfamily_SSF57667
ICAM3	3385	genome.wustl.edu	37	19	10445044	10445044	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002162.3	-1	reviewed	p.L411F	0.002	215	0%	250	18%	74	17.5%	benign(0.008)	deleterious(0.02)	neutral(0.383)	HMMSmart_IG,superfamily_SSF48726
LPPR2	64748	genome.wustl.edu	37	19	11471946	11471946	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022737.2	+1	validated	p.V149M	1.000	43	0%	43	25.6%	15	40%	probably_damaging(0.988)	tolerated(0.11)	deleterious(0.709)	HMMPfam_PAP2,HMMSmart_SM00014,superfamily_Acid phosphatase/Vanadium-dependent haloperoxidase
ZNF823	55552	genome.wustl.edu	37	19	11833856	11833856	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080493.2	-1	validated	p.D165Y	0.000	455	0%	496	29.6%	1	100%	possibly_damaging(0.492)	deleterious(0.01)	deleterious(0.570)	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF441	126068	genome.wustl.edu	37	19	11892039	11892039	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152355.2	+1	validated	p.K467T	0.040	184	0%	207	28%	0	-	benign(0.001)	tolerated(0.08)	neutral(0.300)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF441	126068	genome.wustl.edu	37	19	11892680	11892680	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152355.2	+1	validated	p.H681N	0.000	154	0%	206	21.8%	2	50%	benign(0.001)	tolerated(0.33)	neutral(0.024)	PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF20	7568	genome.wustl.edu	37	19	12243794	12243794	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021143.2	-1	validated	p.V403L	0.503	231	0%	260	18.5%	1	0%	benign(0.105)	deleterious(0)	neutral(0.453)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF709	163051	genome.wustl.edu	37	19	12575681	12575681	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152601.3	-1	validated	p.R352Q	0.000	232	0%	281	24.2%	1	100%	probably_damaging(0.962)	tolerated(1)	neutral(0.405)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF490	57474	genome.wustl.edu	37	19	12691588	12691588	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020714.2	-1	validated	p.R434Q	0.000	251	0%	210	22.9%	0	-	probably_damaging(0.995)	tolerated(0.66)	neutral(0.460)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PKN1	5585	genome.wustl.edu	37	19	14580222	14580222	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_213560.1	+1	reviewed	p.F688	0.993	211	0%	173	31.2%	141	45.3%	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
ZNF333	84449	genome.wustl.edu	37	19	14830028	14830028	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032433.2	+1	validated	p.S630N	0.848	189	0%	182	15.9%	2	0%	possibly_damaging(0.472)	tolerated(0.22)	neutral(0.198)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
LOC100289597	100289597	genome.wustl.edu	37	19	15072861	15072861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002343628.1	+1	model	p.E37K	0.999	74	1.4%	59	22%	0	-	-	-	-	NULL
SYDE1	85360	genome.wustl.edu	37	19	15222243	15222243	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033025.4	+1	provisional	p.V470	1.000	239	0%	189	24.3%	6	0%	-	-	-	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP
CYP4F12	66002	genome.wustl.edu	37	19	15794537	15794537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_023944.2	+1	reviewed	p.K294N	0.994	273	0%	205	29.3%	3	33.3%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	HMMPfam_p450,superfamily_Cytochrome P450
EPS15L1	58513	genome.wustl.edu	37	19	16496002	16496002	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021235.1	-1	provisional	p.P729S	1.000	130	0%	122	27%	12	58.3%	probably_damaging(0.975)	tolerated(0.14)	deleterious(0.666)	NULL
CPAMD8	27151	genome.wustl.edu	37	19	17013546	17013546	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015692.2	-1	validated	p.R1580Q	0.206	34	0%	60	21.7%	0	-	benign(0.029)	tolerated(0.37)	neutral(0.021)	superfamily_Alpha-macroglobulin receptor domain
CPAMD8	27151	genome.wustl.edu	37	19	17100480	17100480	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000443236	-1	known	p.S514N	1.000	44	0%	42	19%	0	-	-	-	-	HMMPfam_A2M_N_2
ELL	8178	genome.wustl.edu	37	19	18583661	18583661	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006532.3	-1	validated	p.F56C	1.000	182	0%	191	20.4%	12	33.3%	possibly_damaging(0.911)	-	-	HMMPfam_ELL
COMP	1311	genome.wustl.edu	37	19	18899991	18899991	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000095.2	-1	reviewed	p.A169V	0.997	23	0%	12	41.7%	0	-	benign(0)	tolerated(0.11)	neutral(0.272)	HMMSmart_EGF_CA,superfamily_SSF57196
MEF2B	100271849	genome.wustl.edu	37	19	19257942	19257942	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145785.1	-1	validated	p.P148	0.562	33	0%	41	24.4%	10	20%	-	-	-	NULL
ZNF101	94039	genome.wustl.edu	37	19	19790858	19790858	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033204.2	+1	provisional	p.R354*	0.005	143	0%	210	21%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF14	7561	genome.wustl.edu	37	19	19822618	19822618	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021030.2	-1	reviewed	p.R491Q	0.000	168	0%	174	23%	5	80%	probably_damaging(0.98)	tolerated(1)	neutral(0.424)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF737	100129842	genome.wustl.edu	37	19	20727540	20727540	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002343624.1	-1	model	p.F490C	0.160	176	0%	205	16.6%	7	42.8%	possibly_damaging(0.898)	deleterious(0)	deleterious(0.799)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF708	7562	genome.wustl.edu	37	19	21476113	21476113	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021269.2	-1	validated	p.R552I	1.000	133	0%	142	24.6%	2	50%	benign(0)	tolerated(0.23)	neutral(0.042)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF493	284443	genome.wustl.edu	37	19	21606426	21606426	+	Missense_Mutation	SNP	A	A	C	rs187938300	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001076678.2	+1	validated	p.K322T	0.077	58	0%	67	22.4%	0	-	unknown(0)	tolerated(0.07)	-	HMMPfam_zf-C2H2,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF208	7757	genome.wustl.edu	37	19	22155381	22155381	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007153.3	-1	provisional	p.T719A	0.000	201	0%	198	20.2%	0	-	benign(0.005)	tolerated(0.95)	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF257	113835	genome.wustl.edu	37	19	22271550	22271550	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033468.2	+1	provisional	p.R333Q	0.000	109	0%	109	31.2%	0	-	benign(0.049)	tolerated(0.53)	neutral(0.010)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100287226	100287226	genome.wustl.edu	37	19	22498307	22498307	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002343636.1	+1	model	p.F563L	0.000	57	0%	63	23.8%	0	-	benign(0.15)	tolerated(0.65)	neutral(0.016)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574440	22574440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098626.1	-1	validated	p.L533I	0.021	252	0%	250	20.4%	0	-	possibly_damaging(0.939)	deleterious(0.01)	deleterious(0.790)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574760	22574760	+	Missense_Mutation	SNP	C	C	A	rs71357915		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098626.1	-1	validated	p.R426I	0.998	134	0%	154	28.6%	0	-	benign(0)	tolerated(0.27)	neutral(0.034)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF98	148198	genome.wustl.edu	37	19	22574928	22574928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098626.1	-1	validated	p.R370I	0.994	110	0%	105	22.9%	0	-	benign(0.038)	tolerated(0.29)	neutral(0.031)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF99	7652	genome.wustl.edu	37	19	22939303	22939303	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080409.1	-1	provisional	p.F956L	0.000	109	0%	138	31.9%	0	-	possibly_damaging(0.799)	tolerated(0.68)	neutral(0.303)	HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF728	388523	genome.wustl.edu	37	19	23159392	23159392	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001726961.1	-1	model	p.I249M	0.456	59	0%	59	15.3%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC100131479	100131479	genome.wustl.edu	37	19	23779441	23779441	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001719802.1	+1	model	p.R55I	0.820	38	0%	42	23.8%	0	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
ZNF675	171392	genome.wustl.edu	37	19	23836503	23836503	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138330.2	-1	validated	p.L411R	0.002	144	0%	153	21.6%	4	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ENSG00000104777	0	genome.wustl.edu	37	19	24102759	24102759	+	RNA	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000300996	-1	known	NULL	0.005	172	0%	164	24.4%	1	0%	-	-	-	-
ZNF726	730087	genome.wustl.edu	37	19	24118156	24118156	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000322487	+1	known	p.K699N	0.977	37	0%	52	15.4%	0	-	benign(0.003)	tolerated(0.09)	neutral(0.296)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
TSHZ3	57616	genome.wustl.edu	37	19	31767474	31767474	+	Silent	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020856.2	-1	validated	p.V1075	0.063	365	0%	414	20%	3	0%	-	-	-	NULL
GAPDHS	26330	genome.wustl.edu	37	19	36035884	36035884	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014364.4	+1	reviewed	p.D377A	1.000	165	0%	183	21.3%	0	-	benign(0.024)	deleterious(0.04)	neutral(0.350)	HMMPfam_Gp_dh_C,superfamily_SSF55347
NPHS1	4868	genome.wustl.edu	37	19	36322597	36322597	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004646.3	-1	reviewed	p.A1078	0.985	42	0%	34	32.4%	0	-	-	-	-	NULL
APLP1	333	genome.wustl.edu	37	19	36363476	36363476	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001024807.1	+1	reviewed	p.K314N	1.000	234	0%	213	30%	1	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
APLP1	333	genome.wustl.edu	37	19	36364579	36364579	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001024807.1	+1	reviewed	p.K340N	1.000	143	0.7%	135	36.3%	4	50%	possibly_damaging(0.908)	deleterious(0)	deleterious(0.806)	superfamily_CAPPD an extracellular domain of amyloid beta A4 protein
COX7A1	1346	genome.wustl.edu	37	19	36641890	36641890	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000437291	-1	known	p.G108E	0.935	157	0%	204	18.1%	8	0%	-	-	-	HMMPfam_COX7a,superfamily_Mitochondrial cytochrome c oxidase subunit VIIa
ZFP82	284406	genome.wustl.edu	37	19	36883912	36883912	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_133466.2	-1	provisional	p.H444N	1.000	216	0%	283	28.3%	2	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF382	84911	genome.wustl.edu	37	19	37101604	37101604	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032825.3	+1	validated	p.E64	0.998	231	0%	381	21.8%	0	-	-	-	-	HMMSmart_SM00349
ZNF829	374899	genome.wustl.edu	37	19	37383166	37383166	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001037232.3	-1	validated	p.R176I	1.000	278	0%	324	31.8%	0	-	probably_damaging(0.997)	tolerated(0.07)	deleterious(0.785)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF527	84503	genome.wustl.edu	37	19	37879916	37879916	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032453.1	+1	validated	p.R322I	0.635	215	0%	293	26.3%	1	0%	possibly_damaging(0.895)	deleterious(0)	deleterious(0.797)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38103616	38103616	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152606.3	+1	validated	p.R479C	0.000	222	0%	272	23.9%	0	-	benign(0.22)	deleterious(0.03)	neutral(0.386)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF540	163255	genome.wustl.edu	37	19	38103781	38103781	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152606.3	+1	validated	p.R534C	0.000	223	0%	250	21.2%	2	0%	benign(0.187)	tolerated(0.21)	neutral(0.061)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF781	163115	genome.wustl.edu	37	19	38160221	38160221	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152605.3	-1	validated	p.E277K	0.970	335	0%	367	25.9%	0	-	possibly_damaging(0.936)	tolerated(0.05)	deleterious(0.727)	NULL
WDR87	83889	genome.wustl.edu	37	19	38376210	38376210	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031951.3	-1	provisional	p.E2662K	0.782	180	0%	166	49.4%	0	-	unknown(0)	-	-	NULL
WDR87	83889	genome.wustl.edu	37	19	38378002	38378002	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031951.3	-1	provisional	p.E2064D	0.000	157	0%	159	37.1%	0	-	possibly_damaging(0.875)	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
WDR87	83889	genome.wustl.edu	37	19	38379099	38379099	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031951.3	-1	provisional	p.E1699*	0.000	620	0%	626	23.3%	0	-	-	-	-	superfamily_WD40 repeat-like,superfamily_ARM repeat
RYR1	6261	genome.wustl.edu	37	19	38931462	38931462	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000540.2	+1	reviewed	p.F41	0.998	19	0%	17	47.1%	0	-	-	-	-	HMMPfam_Ins145_P3_rec
RYR1	6261	genome.wustl.edu	37	19	38934795	38934795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000540.2	+1	reviewed	p.A144V	1.000	99	0%	69	29%	0	-	possibly_damaging(0.907)	-	-	HMMPfam_Ins145_P3_rec,HMMSmart_SM00472
TIMM50	92609	genome.wustl.edu	37	19	39980432	39980432	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001001563.1	+1	validated	p.R448H	1.000	134	0%	118	12.7%	54	29.6%	probably_damaging(0.999)	tolerated(0.07)	deleterious(0.809)	NULL
ENSG00000186838	0	genome.wustl.edu	37	19	40006584	40006584	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000361214	+1	known	p.Q244	0.000	12	0%	20	30%	0	-	-	-	-	NULL
ZNF780B	163131	genome.wustl.edu	37	19	40540723	40540723	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000331800	-1	known	p.F97S	0.000	214	0%	248	19%	5	20%	-	-	-	NULL
SERTAD3	29946	genome.wustl.edu	37	19	40947733	40947733	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013368.3	-1	reviewed	p.G85	0.986	62	0%	37	18.9%	23	43.4%	-	-	-	NULL
SPTBN4	57731	genome.wustl.edu	37	19	41038579	41038579	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020971.2	+1	reviewed	p.T1332	0.004	71	0%	119	31.1%	0	-	-	-	-	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
LTBP4	8425	genome.wustl.edu	37	19	41112202	41112202	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000308370	+1	known	p.G353E	1.000	43	0%	51	33.3%	7	0%	probably_damaging(1)	tolerated(0.32)	deleterious(0.524)	superfamily_Fibril-assoc
HNRNPUL1	11100	genome.wustl.edu	37	19	41774192	41774192	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007040.3	+1	reviewed	p.N120	0.992	238	0%	320	26.6%	28	32.1%	-	-	-	NULL
CEACAM5	1048	genome.wustl.edu	37	19	42219090	42219090	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004363.2	+1	validated	p.D209N	0.984	354	0%	303	23.8%	297	54.5%	possibly_damaging(0.701)	deleterious(0.02)	deleterious(0.635)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
CEACAM3	1084	genome.wustl.edu	37	19	42312866	42312866	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001815.2	+1	reviewed	p.G147V	0.001	155	0%	135	25.2%	0	-	benign(0.164)	deleterious(0.02)	neutral(0.398)	NULL
ARHGEF1	9138	genome.wustl.edu	37	19	42392165	42392165	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_199002.1	+1	reviewed	p.F19	0.004	299	0%	334	21.6%	9	0%	-	-	-	NULL
RABAC1	10567	genome.wustl.edu	37	19	42461083	42461083	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006423.2	-1	validated	p.A158D	1.000	68	0%	42	21.4%	288	34.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_PRA1
GRIK5	2901	genome.wustl.edu	37	19	42566696	42566696	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002088.3	-1	reviewed	p.R151Q	1.000	102	2%	110	31.8%	0	-	benign(0.329)	deleterious(0.04)	neutral(0.452)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
POU2F2	5452	genome.wustl.edu	37	19	42626335	42626335	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002698.2	-1	validated	e4-1	1.000	120	0%	239	25.5%	0	-	-	-	-	-
LIPE	3991	genome.wustl.edu	37	19	42930811	42930811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005357.2	-1	reviewed	p.G164E	0.000	204	0%	174	28.7%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
LIPE	3991	genome.wustl.edu	37	19	42931186	42931186	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005357.2	-1	reviewed	p.S39L	0.000	379	0.3%	354	26.8%	0	-	possibly_damaging(0.922)	deleterious(0)	deleterious(0.816)	NULL
ZNF283	284349	genome.wustl.edu	37	19	44351349	44351349	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181845.1	+1	validated	p.R199I	0.000	73	0%	111	18.9%	2	50%	possibly_damaging(0.802)	tolerated(0.19)	neutral(0.351)	superfamily_C2H2 and C2HC zinc fingers
ZNF221	7638	genome.wustl.edu	37	19	44470846	44470846	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013359.2	+1	validated	p.E398*	0.002	209	0%	232	22%	1	0%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF222	7673	genome.wustl.edu	37	19	44537137	44537137	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001129996.1	+1	validated	p.R477H	0.000	124	0%	144	29.2%	2	50%	probably_damaging(1)	tolerated(0.12)	deleterious(0.760)	superfamily_C2H2 and C2HC zinc fingers
ZNF225	7768	genome.wustl.edu	37	19	44636760	44636760	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013362.2	+1	validated	p.S665A	0.002	194	0%	255	23.1%	1	0%	possibly_damaging(0.721)	tolerated(0.22)	neutral(0.303)	superfamily_C2H2 and C2HC zinc fingers
ZNF226	7769	genome.wustl.edu	37	19	44681133	44681133	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001032372.1	+1	validated	p.R573Q	0.009	227	0%	305	27.9%	6	66.6%	probably_damaging(0.999)	tolerated(0.29)	deleterious(0.519)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF227	7770	genome.wustl.edu	37	19	44740601	44740601	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182490.1	+1	provisional	p.S673L	0.001	280	0%	326	18.1%	12	16.6%	possibly_damaging(0.918)	tolerated(0.13)	deleterious(0.621)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SYMPK	8189	genome.wustl.edu	37	19	46327116	46327116	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004819.2	-1	reviewed	p.M836I	1.000	72	0%	74	18.9%	46	19.5%	probably_damaging(0.997)	tolerated(0.1)	deleterious(0.752)	superfamily_ARM repeat
PGLYRP1	8993	genome.wustl.edu	37	19	46522675	46522675	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005091.2	-1	validated	p.R138W	0.078	187	0.5%	137	28.5%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_Amidase_2,HMMSmart_Ami_2,superfamily_Amidase_2,HMMSmart_PGRP
PNMAL2	57469	genome.wustl.edu	37	19	46997313	46997313	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020709.1	-1	validated	p.N470	0.000	95	0%	121	23.1%	0	-	-	-	-	NULL
SLC1A5	6510	genome.wustl.edu	37	19	47278815	47278815	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005628.2	-1	validated	p.G526	0.000	104	0%	92	42.4%	95	54.7%	-	-	-	NULL
ZC3H4	23211	genome.wustl.edu	37	19	47572584	47572584	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015168.1	-1	validated	p.Y721	1.000	76	1.3%	37	27%	8	50%	-	-	-	NULL
GLTSCR2	29997	genome.wustl.edu	37	19	48259803	48259803	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015710.4	+1	validated	p.R439*	0.437	66	0%	76	27.6%	321	5.6%	-	-	-	HMMPfam_Nop53
PPP1R15A	23645	genome.wustl.edu	37	19	49378882	49378882	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014330.3	+1	validated	p.S559	0.987	32	0%	31	16.1%	44	52.2%	-	-	-	HMMPfam_PP1c_bdg
SLC6A16	28968	genome.wustl.edu	37	19	49793430	49793430	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014037.2	-1	validated	p.L721I	0.000	228	0%	349	24.9%	0	-	possibly_damaging(0.915)	deleterious(0.04)	deleterious(0.716)	NULL
SLC17A7	57030	genome.wustl.edu	37	19	49937024	49937024	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020309.3	-1	reviewed	p.D276N	1.000	152	0%	101	23.8%	0	-	benign(0.245)	tolerated(0.32)	neutral(0.049)	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter
NAPSA	9476	genome.wustl.edu	37	19	50865026	50865026	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004851.1	-1	reviewed	p.R121Q	0.023	96	0%	114	22.8%	1	0%	probably_damaging(0.999)	tolerated(0.08)	deleterious(0.790)	HMMPfam_Asp,superfamily_Pept_Aspartic
KLK3	354	genome.wustl.edu	37	19	51362791	51362791	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001030047.1	+1	reviewed	p.V212	0.002	86	0%	76	34.2%	0	-	-	-	-	HMMSmart_SM00020
ZNF175	7728	genome.wustl.edu	37	19	52091385	52091385	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007147.2	+1	validated	p.N601H	0.917	128	0%	155	32.9%	2	0%	probably_damaging(0.996)	tolerated(0.69)	neutral(0.464)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF615	284370	genome.wustl.edu	37	19	52497516	52497516	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198480.2	-1	provisional	p.K271N	0.015	268	0.4%	269	22.7%	3	0%	probably_damaging(0.978)	tolerated(0.24)	neutral(0.458)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF836	162962	genome.wustl.edu	37	19	52659047	52659047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001102657.1	-1	provisional	p.R630I	0.017	164	0%	181	27.6%	2	50%	probably_damaging(1)	tolerated(0.13)	deleterious(0.752)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF808	388558	genome.wustl.edu	37	19	53058177	53058177	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001039886.3	+1	validated	p.R670C	0.224	295	0%	332	22.9%	0	-	possibly_damaging(0.936)	deleterious(0)	deleterious(0.826)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF611	81856	genome.wustl.edu	37	19	53210090	53210090	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030972.3	-1	validated	p.E73G	0.000	261	0%	316	27.5%	1	0%	probably_damaging(0.967)	deleterious(0.01)	deleterious(0.815)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF28	7576	genome.wustl.edu	37	19	53303706	53303706	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006969.2	-1	validated	p.E411D	1.000	349	0%	385	33.2%	4	25%	possibly_damaging(0.56)	deleterious(0.01)	deleterious(0.597)	superfamily_SSF57667
ZNF160	90338	genome.wustl.edu	37	19	53572562	53572562	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001102603.1	-1	reviewed	p.R409C	0.000	314	0%	331	22.1%	2	50%	probably_damaging(0.999)	tolerated(0.1)	deleterious(0.777)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF677	342926	genome.wustl.edu	37	19	53741551	53741551	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_182609.2	-1	provisional	p.F143L	0.019	590	0.2%	719	25.9%	0	-	benign(0.004)	tolerated(1)	-	NULL
ZNF845	91664	genome.wustl.edu	37	19	53856228	53856228	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_138374.1	+1	validated	p.R767I	0.000	241	0%	295	30.2%	0	-	possibly_damaging(0.659)	tolerated(0.39)	neutral(0.248)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF525	170958	genome.wustl.edu	37	19	53879124	53879124	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000474037	+1	known	p.E39D	0.836	785	0.3%	883	13.1%	2	0%	probably_damaging(0.982)	deleterious(0)	deleterious(0.871)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF765	91661	genome.wustl.edu	37	19	53911193	53911193	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001040185.1	+1	provisional	p.N129H	0.044	301	0%	386	28.8%	0	-	benign(0.004)	tolerated(0.29)	neutral(0.029)	NULL
ZNF765	91661	genome.wustl.edu	37	19	53911282	53911282	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001040185.1	+1	provisional	p.E158D	0.493	374	0%	393	30.3%	0	-	benign(0.07)	tolerated(0.3)	neutral(0.034)	NULL
ZNF765	91661	genome.wustl.edu	37	19	53911569	53911569	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001040185.1	+1	provisional	p.S254L	0.000	294	0.3%	370	31.1%	1	0%	benign(0)	tolerated(0.1)	neutral(0.286)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
MIR519D	574480	genome.wustl.edu	37	19	54216635	54216635	+	RNA	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000385246	+1	known	NULL	0.016	420	0%	578	27%	0	-	-	-	-	-
NLRP12	91662	genome.wustl.edu	37	19	54314185	54314185	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144687.2	-1	reviewed	p.R243I	0.266	46	0%	51	17.6%	0	-	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	HMMPfam_NACHT
CACNG8	59283	genome.wustl.edu	37	19	54483231	54483231	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031895.4	+1	reviewed	p.L160M	0.999	159	0%	165	23.6%	0	-	probably_damaging(0.999)	tolerated(0.06)	deleterious(0.813)	HMMPfam_PMP22_Claudin
VSTM1	284415	genome.wustl.edu	37	19	54545064	54545064	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198481.3	-1	validated	p.D187A	0.012	112	0%	146	25.3%	0	-	benign(0.079)	deleterious(0.04)	neutral(0.354)	NULL
LILRA6	79168	genome.wustl.edu	37	19	54744920	54744920	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024318.2	-1	validated	p.D248Y	0.012	502	0%	437	12.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726
LILRA5	353514	genome.wustl.edu	37	19	54818802	54818802	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021250.2	-1	reviewed	p.L266F	0.056	364	0%	343	25.9%	1	0%	benign(0.011)	deleterious(0)	neutral(0.445)	NULL
LAIR2	3904	genome.wustl.edu	37	19	55020244	55020244	+	Splice_Site	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002288.3	+1	reviewed	e4-1	0.010	268	0%	229	20.5%	0	-	-	-	-	-
KIR3DX1	90011	genome.wustl.edu	37	19	55045040	55045040	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000335056	+1	known	p.R54W	0.000	229	0%	218	29.4%	0	-	possibly_damaging(0.708)	deleterious(0.02)	deleterious(0.639)	HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin
FCAR	2204	genome.wustl.edu	37	19	55396733	55396733	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002000.2	+1	reviewed	p.R53C	0.000	221	0%	242	16.5%	0	-	probably_damaging(0.993)	tolerated(0.18)	deleterious(0.506)	HMMSmart_SM00409,superfamily_Immunoglobulin
NLRP2	55655	genome.wustl.edu	37	19	55494253	55494253	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017852.3	+1	validated	p.S396L	0.001	47	0%	30	20%	3	0%	probably_damaging(0.979)	deleterious(0.02)	deleterious(0.805)	NULL
NLRP8	126205	genome.wustl.edu	37	19	56466570	56466570	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_176811.2	+1	provisional	p.F382	0.000	141	0.7%	162	24.7%	0	-	-	-	-	NULL
ZSCAN5C	649137	genome.wustl.edu	37	19	56720549	56720549	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000376267	+1	known	p.R491*	0.036	58	0%	51	29.4%	0	-	-	-	-	superfamily_SSF57667
ZNF667	63934	genome.wustl.edu	37	19	56952770	56952770	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022103.3	-1	validated	p.C532R	0.985	164	0%	187	28.9%	1	100%	probably_damaging(0.983)	deleterious(0)	deleterious(0.873)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF667	63934	genome.wustl.edu	37	19	56953008	56953008	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022103.3	-1	validated	p.F452	0.329	136	0%	142	24.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZFP28	140612	genome.wustl.edu	37	19	57066471	57066471	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020828.1	+1	provisional	p.S773R	0.199	314	0%	314	27.1%	1	0%	probably_damaging(0.992)	tolerated(0.07)	deleterious(0.766)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
ZNF17	7565	genome.wustl.edu	37	19	57932036	57932036	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006959.2	+1	validated	p.G392	0.969	199	0%	215	30.7%	2	50%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF772	400720	genome.wustl.edu	37	19	57984859	57984859	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001024596.2	-1	validated	p.S418N	0.010	292	0%	289	20.4%	0	-	possibly_damaging(0.461)	tolerated(0.37)	neutral(0.170)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
ZNF211	10520	genome.wustl.edu	37	19	58153449	58153449	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006385.3	+1	validated	p.T545M	0.999	284	0%	324	26.2%	4	75%	possibly_damaging(0.92)	deleterious(0)	deleterious(0.816)	superfamily_SSF57667
ZSCAN4	201516	genome.wustl.edu	37	19	58189646	58189646	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152677.2	+1	validated	p.E225D	0.004	147	0%	228	21.1%	0	-	probably_damaging(0.99)	tolerated(0.15)	deleterious(0.682)	NULL
ZNF417	147687	genome.wustl.edu	37	19	58421437	58421437	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152475.2	-1	validated	p.R70I	0.000	214	0%	239	19.2%	7	14.2%	benign(0)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)
ZNF606	80095	genome.wustl.edu	37	19	58490621	58490621	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025027.3	-1	validated	p.R476I	1.000	236	0%	235	30.2%	0	-	possibly_damaging(0.787)	tolerated(0.16)	neutral(0.354)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
RPS5	6193	genome.wustl.edu	37	19	58904471	58904471	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001009.3	+1	reviewed	p.H79	0.831	103	1%	101	22.8%	1604	25.3%	-	-	-	HMMPfam_Ribosomal_S7,PatternScan_RIBOSOMAL_S7,superfamily_Ribosomal protein S7
ENSG00000249146	0	genome.wustl.edu	37	19	59021452	59021452	+	RNA	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000514271	+1	known	NULL	0.000	44	0%	60	28.3%	0	-	-	-	-	-
SIRPG	55423	genome.wustl.edu	37	20	1616867	1616867	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018556.3	-1	reviewed	p.R239S	0.985	292	0%	305	22.3%	5	0%	benign(0.18)	deleterious(0.02)	neutral(0.400)	HMMPfam_C1-set
EBF4	57593	genome.wustl.edu	37	20	2686289	2686289	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001110514.1	+1	provisional	p.F64L	1.000	202	0%	196	26%	3	33.3%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
SIGLEC1	6614	genome.wustl.edu	37	20	3687141	3687141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_023068.3	-1	reviewed	p.E88K	0.000	37	0%	31	25.8%	0	-	benign(0.075)	tolerated(0.67)	neutral(0.007)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
CDC25B	994	genome.wustl.edu	37	20	3784161	3784161	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021873.2	+1	reviewed	p.F489L	1.000	162	0%	98	24.5%	34	17.6%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase
PANK2	80025	genome.wustl.edu	37	20	3888828	3888828	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153638.2	+1	reviewed	p.F295C	1.000	264	0%	308	27.9%	14	35.7%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Fumble,superfamily_Actin-like ATPase domain
PCNA	5111	genome.wustl.edu	37	20	5095950	5095950	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002592.2	-1	reviewed	p.I255	0.475	381	0%	469	27.3%	67	34.3%	-	-	-	superfamily_DNA clamp
PROKR2	128674	genome.wustl.edu	37	20	5282798	5282798	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144773.2	-1	reviewed	p.M348T	0.996	240	0%	256	29.3%	0	-	benign(0.002)	deleterious(0.03)	neutral(0.364)	superfamily_SSF81321
TASP1	55617	genome.wustl.edu	37	20	13567972	13567972	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017714.2	-1	reviewed	p.L110	1.000	378	0%	486	26.3%	6	50%	-	-	-	HMMPfam_Asparaginase_2,superfamily_SSF56235
SEL1L2	80343	genome.wustl.edu	37	20	13845828	13845828	+	Nonsense_Mutation	SNP	G	G	A	rs181883053	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025229.1	-1	validated	p.R544*	1.000	277	0%	257	31.9%	0	-	-	-	-	superfamily_SSF81901
SEL1L2	80343	genome.wustl.edu	37	20	13866968	13866968	+	Missense_Mutation	SNP	T	T	G	rs146403121	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_025229.1	-1	validated	p.K289T	1.000	648	0%	743	30.4%	0	-	probably_damaging(0.99)	deleterious(0.01)	deleterious(0.847)	superfamily_SSF81901
BFSP1	631	genome.wustl.edu	37	20	17475524	17475524	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001195.3	-1	reviewed	p.K398T	0.000	509	0%	497	31%	0	-	probably_damaging(0.995)	deleterious(0.03)	deleterious(0.822)	NULL
XRN2	22803	genome.wustl.edu	37	20	21327175	21327175	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012255.3	+1	reviewed	p.R551I	1.000	379	0%	386	17.1%	18	27.7%	probably_damaging(0.977)	tolerated(0.06)	deleterious(0.742)	NULL
NAPB	63908	genome.wustl.edu	37	20	23383635	23383635	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022080.2	-1	validated	p.W58L	1.000	448	0%	543	20.6%	1	100%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_TPR-like
VSX1	30813	genome.wustl.edu	37	20	25059434	25059434	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_199425.1	-1	reviewed	p.D220Y	0.000	353	0%	364	13.7%	0	-	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
ENTPD6	955	genome.wustl.edu	37	20	25193952	25193952	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000433417	+1	known	p.S90L	0.001	137	0%	159	24.5%	52	48%	-	-	-	HMMPfam_GDA1_CD39
ENTPD6	955	genome.wustl.edu	37	20	25196318	25196318	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001247.2	+1	reviewed	p.S227L	0.328	124	0%	167	35.9%	45	42.2%	benign(0.004)	tolerated(0.77)	neutral(0.001)	HMMPfam_GDA1_CD39,PatternScan_GDA1_CD39_NTPASE
SUN5	140732	genome.wustl.edu	37	20	31592102	31592102	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_080675.3	-1	validated	p.L15	0.000	118	0%	141	22%	0	-	-	-	-	NULL
BPIFA3	128861	genome.wustl.edu	37	20	31812227	31812227	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178466.3	+1	validated	p.F115	0.579	323	0%	345	27.8%	0	-	-	-	-	HMMPfam_LBP_BPI_CETP,superfamily_Bactericidal permeability-increasing protein BPI
CHMP4B	128866	genome.wustl.edu	37	20	32441324	32441324	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_176812.4	+1	reviewed	p.D211	0.177	168	0%	268	22%	337	34.7%	-	-	-	NULL
EIF2S2	8894	genome.wustl.edu	37	20	32684576	32684576	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003908.3	-1	reviewed	p.K190N	1.000	412	0%	417	23.7%	51	35.2%	probably_damaging(1)	tolerated(0.15)	deleterious(0.741)	HMMPfam_eIF-5_eIF-2B,superfamily_Translation initiation factor 2 beta aIF2beta N-terminal domain
NCOA6	23054	genome.wustl.edu	37	20	33345246	33345246	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014071.2	-1	reviewed	p.F435	0.990	267	0%	298	26.2%	3	33.3%	-	-	-	NULL
GDF5OS	554250	genome.wustl.edu	37	20	34022687	34022687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000374375	+1	known	p.S244Y	0.961	21	0%	27	29.6%	1	0%	unknown(0)	-	-	NULL
C20orf152	140894	genome.wustl.edu	37	20	34618469	34618469	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_080834.1	+1	predicted	p.R540C	0.000	261	0.4%	341	24.6%	0	-	benign(0.001)	tolerated(0.07)	neutral(0.319)	NULL
EPB41L1	2036	genome.wustl.edu	37	20	34809826	34809826	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012156.2	+1	reviewed	p.R827Q	1.000	126	0%	125	28%	48	47.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_4_1_CTD
NNAT	4826	genome.wustl.edu	37	20	36150803	36150803	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005386.2	+1	reviewed	p.R39Q	1.000	181	0%	219	38.8%	0	-	unknown(0)	deleterious(0)	-	NULL
CTNNBL1	56259	genome.wustl.edu	37	20	36386050	36386050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_030877.3	+1	reviewed	p.D186N	1.000	289	0.3%	343	24.2%	12	58.3%	possibly_damaging(0.948)	deleterious(0.01)	deleterious(0.796)	superfamily_ARM repeat
KIAA1755	85449	genome.wustl.edu	37	20	36869387	36869387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001029864.1	-1	predicted	p.D382E	0.003	46	0%	35	20%	2	0%	benign(0.022)	tolerated(0.61)	neutral(0.005)	NULL
RALGAPB	57148	genome.wustl.edu	37	20	37202869	37202869	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020336.2	+1	validated	p.Q1407K	1.000	232	0%	188	24.5%	6	33.3%	benign(0.002)	tolerated(0.08)	neutral(0.300)	superfamily_Rap/Ran-GAP (Pfam 02145)
ADIG	149685	genome.wustl.edu	37	20	37209999	37209999	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001018082.1	+1	validated	p.R36C	0.002	492	0%	589	28.5%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
ACTR5	79913	genome.wustl.edu	37	20	37384521	37384521	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024855.3	+1	validated	p.M339V	1.000	252	0%	255	23.1%	4	50%	benign(0)	tolerated(0.59)	neutral(0.004)	HMMPfam_Actin,HMMSmart_ACTIN,superfamily_SSF53067
GTSF1L	149699	genome.wustl.edu	37	20	42355134	42355134	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_176791.3	-1	validated	p.S67	0.557	272	0%	246	30.5%	0	-	-	-	-	HMMPfam_UPF0224
HNF4A	3172	genome.wustl.edu	37	20	43057054	43057054	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000457.3	+1	reviewed	p.I403	0.617	85	0%	102	22.5%	0	-	-	-	-	NULL
ZNF840	100130863	genome.wustl.edu	37	20	45093595	45093595	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001722110.1	+1	model	p.F163	0.915	175	0%	216	26.9%	0	-	-	-	-	NULL
ZNF334	55713	genome.wustl.edu	37	20	45130368	45130368	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018102.3	-1	validated	p.R537K	0.528	182	0%	219	27.4%	0	-	benign(0.279)	tolerated(0.08)	neutral(0.330)	superfamily_SSF57667
SLC9A8	23315	genome.wustl.edu	37	20	48497520	48497520	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015266.1	+1	validated	p.F406L	1.000	498	0%	549	28.1%	1	0%	benign(0)	tolerated(0.75)	neutral(0.002)	HMMPfam_Na_H_Exchanger
TSHZ2	128553	genome.wustl.edu	37	20	51870781	51870781	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173485.4	+1	validated	p.A262T	1.000	76	0%	73	28.8%	5	0%	possibly_damaging(0.949)	tolerated(0.07)	deleterious(0.712)	NULL
CASS4	57091	genome.wustl.edu	37	20	55027208	55027208	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020356.3	+1	validated	p.D326Y	0.000	142	0%	128	22.7%	0	-	benign(0.238)	deleterious(0.04)	neutral(0.373)	NULL
GCNT7	140687	genome.wustl.edu	37	20	55071917	55071917	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000243913	-1	known	p.E128K	0.029	238	0%	243	23.5%	0	-	benign(0)	tolerated(0.19)	neutral(0.050)	HMMPfam_Branch
BMP7	655	genome.wustl.edu	37	20	55803379	55803379	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001719.2	-1	reviewed	p.E173K	1.000	108	0%	135	25.9%	3	0%	probably_damaging(1)	tolerated(0.06)	deleterious(0.823)	HMMPfam_TGFb_propeptide
SPO11	23626	genome.wustl.edu	37	20	55908330	55908330	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012444.2	+1	reviewed	p.F111C	1.000	299	0%	232	18.5%	0	-	possibly_damaging(0.878)	tolerated(0.17)	neutral(0.401)	superfamily_DNA topoisomerase IV alpha subunit,HMMPfam_TP6A_N
ZNF831	128611	genome.wustl.edu	37	20	57829766	57829766	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_178457.1	+1	provisional	p.D1668N	0.984	66	0%	67	19.4%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
SYCP2	10388	genome.wustl.edu	37	20	58467646	58467646	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014258.2	-1	reviewed	p.S635L	0.024	341	0%	489	27.2%	1	0%	benign(0.001)	tolerated(0.49)	neutral(0.011)	NULL
LOC100287640	100287640	genome.wustl.edu	37	20	60504866	60504866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002343715.1	-1	model	p.D46N	1.000	86	0%	77	13%	1	0%	-	-	-	NULL
USP25	29761	genome.wustl.edu	37	21	17191141	17191141	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013396.3	+1	validated	p.E352D	0.999	270	0%	363	28.4%	4	50%	benign(0.004)	tolerated(0.8)	neutral(0.001)	HMMPfam_UCH,superfamily_Cysteine proteinases
CXADR	1525	genome.wustl.edu	37	21	18933073	18933073	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001338.3	+1	reviewed	p.T209P	1.000	604	0.2%	716	31.7%	13	61.5%	probably_damaging(1)	tolerated(0.2)	deleterious(0.549)	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin
NCAM2	4685	genome.wustl.edu	37	21	22881266	22881266	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004540.2	+1	reviewed	p.F724L	1.000	281	0%	385	11.2%	0	-	probably_damaging(0.974)	deleterious(0.04)	deleterious(0.765)	NULL
KRTAP15-1	254950	genome.wustl.edu	37	21	31812922	31812922	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181623.1	+1	provisional	p.R93	0.267	248	0%	223	17.9%	0	-	-	-	-	HMMPfam_PMG
TIAM1	7074	genome.wustl.edu	37	21	32575277	32575277	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003253.2	-1	validated	p.E814*	0.959	455	0%	521	27.6%	1	0%	-	-	-	HMMPfam_RBD,HMMSmart_RBD
SCAF4	57466	genome.wustl.edu	37	21	33044112	33044112	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020706.2	-1	reviewed	p.R1015Q	1.000	349	0%	386	30.8%	18	16.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
MIR802	768219	genome.wustl.edu	37	21	37093035	37093035	+	RNA	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000390235	+1	known	NULL	1.000	169	0%	188	24.5%	0	-	-	-	-	-
SH3BGR	6450	genome.wustl.edu	37	21	40834319	40834319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007341.2	+1	validated	p.E85*	1.000	284	0%	391	26.6%	16	31.2%	-	-	-	HMMPfam_SH3BGR,superfamily_Thiordxn-like_fd
SLC37A1	54020	genome.wustl.edu	37	21	43945930	43945930	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018964.3	+1	reviewed	p.S34N	1.000	524	0.2%	632	26.7%	17	47%	probably_damaging(0.963)	deleterious(0.02)	deleterious(0.788)	HMMPfam_MFS_1,superfamily_MFS general substrate transporter
CBS	875	genome.wustl.edu	37	21	44485602	44485602	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000071.2	-1	reviewed	p.E187D	1.000	54	0%	52	21.2%	20	50%	benign(0.002)	deleterious(0.02)	neutral(0.383)	HMMPfam_PALP,superfamily_Tryptophan synthase beta subunit-like PLP-dependent enzymes
AGPAT3	56894	genome.wustl.edu	37	21	45402199	45402199	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001037553.1	+1	reviewed	p.R353C	1.000	116	0%	163	23.9%	19	36.8%	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	NULL
PCBP3	54039	genome.wustl.edu	37	21	47333959	47333959	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000400304	+1	known	p.A200V	1.000	44	0%	73	11%	1	0%	benign(0.006)	tolerated(0.14)	neutral(0.249)	NULL
MCM3AP	8888	genome.wustl.edu	37	21	47705107	47705107	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003906.3	-1	reviewed	p.R32*	0.949	142	0%	124	27.4%	3	66.6%	-	-	-	NULL
USP18	11274	genome.wustl.edu	37	22	18644666	18644666	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017414.3	+1	validated	p.E122*	0.990	77	0%	61	19.7%	11	0%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
DGCR8	54487	genome.wustl.edu	37	22	20082239	20082239	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022720.5	+1	validated	p.R570Q	1.000	171	0%	210	31%	10	10%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_dsrm,HMMSmart_SM00358,superfamily_dsRNA-binding domain-like
IGLV4-60	28785	genome.wustl.edu	37	22	22516874	22516874	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000390284	+1	known	p.I54	0.000	225	0%	247	25.1%	24	0%	-	-	-	HMMSmart_SM00406,HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
ZNF280B	140883	genome.wustl.edu	37	22	22842527	22842527	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_080764.2	-1	reviewed	p.G399	0.112	240	0%	279	28.7%	0	-	-	-	-	NULL
IGLV3-27	28791	genome.wustl.edu	37	22	23011035	23011035	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000390304	+1	known	p.P33L	0.002	124	0%	104	30.8%	15	0%	benign(0)	tolerated(0.41)	neutral(0.015)	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin
SPECC1L	23384	genome.wustl.edu	37	22	24717298	24717298	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145468.1	+1	validated	p.K117T	1.000	133	0%	138	27.5%	3	66.6%	probably_damaging(0.978)	deleterious(0.01)	deleterious(0.826)	NULL
HPS4	89781	genome.wustl.edu	37	22	26853865	26853865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022081.4	-1	reviewed	p.E639K	0.940	83	0%	97	18.6%	17	23.5%	benign(0.15)	deleterious(0.04)	neutral(0.362)	NULL
CRYBA4	1413	genome.wustl.edu	37	22	27026429	27026429	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001886.2	+1	reviewed	p.S190N	0.995	132	0%	110	23.6%	1	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Crystall,HMMSmart_XTALbg,superfamily_G_crystallin_SF
ZNRF3	84133	genome.wustl.edu	37	22	29439407	29439407	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032173.2	+1	validated	p.R108C	1.000	122	0%	117	23.9%	17	64.7%	probably_damaging(0.984)	deleterious(0.01)	deleterious(0.836)	NULL
NF2	4771	genome.wustl.edu	37	22	30061039	30061039	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000268.3	+1	reviewed	p.R291C	1.000	399	0%	533	21.6%	6	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_FERM_C,superfamily_PH domain-like
MTMR3	8897	genome.wustl.edu	37	22	30416037	30416037	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021090.3	+1	reviewed	p.R797*	0.003	136	0.7%	168	21.4%	7	14.2%	-	-	-	NULL
PES1	23481	genome.wustl.edu	37	22	30984061	30984061	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014303.2	-1	reviewed	p.D69Y	1.000	434	0%	469	25.6%	21	33.3%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Pescadillo_N
RNF185	91445	genome.wustl.edu	37	22	31601135	31601135	+	RNA	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NR_024209.1	+1	validated	NULL	0.023	379	0%	423	20.8%	14	78.5%	-	-	-	-
EIF3D	8664	genome.wustl.edu	37	22	36922110	36922110	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003753.3	-1	reviewed	p.A20V	1.000	116	0%	139	27.3%	55	36.3%	benign(0.01)	tolerated(0.28)	neutral(0.032)	HMMPfam_eIF-3_zeta
IL2RB	3560	genome.wustl.edu	37	22	37528469	37528469	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000447922	-1	known	p.E41K	0.023	360	0%	363	23.1%	23	0%	-	-	-	NULL
ELFN2	114794	genome.wustl.edu	37	22	37771266	37771266	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_052906.3	-1	validated	p.S103	0.109	205	0%	241	26.1%	0	-	-	-	-	superfamily_SSF52058
C22orf23	84645	genome.wustl.edu	37	22	38343354	38343354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032561.2	-1	predicted	p.R95W	1.000	176	0%	220	16.4%	5	20%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_UPF0193
DDX17	10521	genome.wustl.edu	37	22	38890909	38890909	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098504.1	-1	reviewed	p.K341N	1.000	246	0%	304	30.3%	69	28.9%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_DEAD,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
APOBEC3C	27350	genome.wustl.edu	37	22	39414354	39414354	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014508.2	+1	reviewed	p.R179*	0.000	357	0%	368	20.4%	38	15.7%	-	-	-	HMMPfam_APOBEC_C
TAB1	10454	genome.wustl.edu	37	22	39814764	39814764	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006116.2	+1	reviewed	p.S193L	0.996	111	0%	117	29.1%	12	8.3%	benign(0.1)	deleterious(0.03)	neutral(0.372)	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C
FBLN1	2192	genome.wustl.edu	37	22	45996294	45996294	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006486.2	+1	reviewed	p.V694I	1.000	99	0%	84	22.6%	43	2.3%	possibly_damaging(0.694)	tolerated(0.22)	neutral(0.291)	NULL
TTC38	55020	genome.wustl.edu	37	22	46671279	46671279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017931.2	+1	validated	p.R167Q	1.000	278	0%	251	28.7%	10	20%	probably_damaging(0.994)	tolerated(0.12)	deleterious(0.713)	superfamily_SSF48452
MAPK12	6300	genome.wustl.edu	37	22	50695216	50695216	+	Splice_Site	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000467891	-1	known	NULL	0.008	39	0%	24	33.3%	0	-	-	-	-	-
SHANK3	85358	genome.wustl.edu	37	22	51154132	51154132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001080420.1	+1	reviewed	p.E783D	1.000	106	0%	71	43.7%	5	0%	benign(0.21)	tolerated(0.18)	neutral(0.076)	NULL
ENSG00000212884	0	genome.wustl.edu	37	GL000205.1	117722	117722	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000391571	+1	known	p.I118T	NULL	63	7.9%	72	15.3%	0	-	benign(0)	tolerated(1)	-	NULL
PPP2R3B	28227	genome.wustl.edu	37	X	306357	306357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013239.4	-1	reviewed	p.F310L	1.000	307	0%	278	26.6%	11	63.6%	benign(0.409)	deleterious(0)	deleterious(0.577)	superfamily_EF-hand
XG	7499	genome.wustl.edu	37	X	2700106	2700106	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001141919.1	+1	reviewed	e4-1	0.037	376	0%	455	24.2%	0	-	-	-	-	-
PNPLA4	8228	genome.wustl.edu	37	X	7889875	7889875	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142389.1	-1	reviewed	p.S97L	0.001	339	0%	342	31%	43	44.1%	benign(0)	tolerated(0.09)	neutral(0.296)	HMMPfam_Patatin,superfamily_FabD/lysophospholipase-like
FAM9A	171482	genome.wustl.edu	37	X	8766431	8766431	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_174951.3	-1	validated	p.E104*	0.045	819	0%	918	21.6%	0	-	-	-	-	NULL
ARHGAP6	395	genome.wustl.edu	37	X	11682616	11682616	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013427.2	-1	reviewed	p.E111	0.977	92	0%	109	33%	0	-	-	-	-	NULL
MSL3	10943	genome.wustl.edu	37	X	11782015	11782015	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_078629.2	+1	reviewed	p.K289T	1.000	328	0%	360	25.6%	7	28.5%	probably_damaging(0.998)	tolerated(0.15)	deleterious(0.716)	HMMPfam_MRG
FANCB	2187	genome.wustl.edu	37	X	14863192	14863192	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001018113.1	-1	reviewed	p.K571N	0.003	140	0%	170	25.9%	2	0%	benign(0.076)	tolerated(0.05)	neutral(0.351)	NULL
BMX	660	genome.wustl.edu	37	X	15555384	15555384	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001721.6	+1	reviewed	p.G450	0.987	444	0%	526	25.7%	0	-	-	-	-	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
BMX	660	genome.wustl.edu	37	X	15555405	15555405	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001721.6	+1	reviewed	p.F457L	1.000	449	0%	502	30.1%	0	-	possibly_damaging(0.932)	deleterious(0.04)	deleterious(0.728)	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,superfamily_Kinase_like
ACE2	59272	genome.wustl.edu	37	X	15618957	15618957	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021804.2	-1	reviewed	p.K26N	0.000	294	0%	313	25.9%	1	0%	benign(0.001)	tolerated(0.08)	neutral(0.300)	"HMMPfam_Peptidase_M2,superfamily_Metalloproteases (""zincins"") catalytic domain"
PPEF1	5475	genome.wustl.edu	37	X	18775789	18775789	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006240.2	+1	reviewed	p.K147N	0.989	456	0%	442	27.6%	0	-	possibly_damaging(0.787)	tolerated(0.16)	neutral(0.354)	HMMSmart_SM00156,HMMPfam_PPP5,superfamily_Metallo-dependent phosphatases
MAP7D2	256714	genome.wustl.edu	37	X	20028971	20028971	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152780.3	-1	validated	p.E717K	0.998	237	0%	349	23.5%	0	-	probably_damaging(0.977)	deleterious(0.01)	deleterious(0.825)	NULL
MAP7D2	256714	genome.wustl.edu	37	X	20033395	20033395	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152780.3	-1	validated	p.L524	0.950	520	0%	509	27.7%	0	-	-	-	-	HMMPfam_MAP7
EIF1AX	1964	genome.wustl.edu	37	X	20150343	20150343	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001412.3	-1	reviewed	p.D98	1.000	290	0%	318	24.8%	46	47.8%	-	-	-	HMMSmart_SM00652,superfamily_Nucleic acid-binding proteins
MBTPS2	51360	genome.wustl.edu	37	X	21900709	21900709	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015884.3	+1	reviewed	p.L499R	1.000	503	0%	454	25.1%	4	0%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_Peptidase_M50
PCYT1B	9468	genome.wustl.edu	37	X	24608196	24608196	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004845.4	-1	reviewed	p.E144K	1.000	286	0%	384	27.3%	0	-	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_CTP_transf_2,superfamily_Nucleotidylyl transferase
MAGEB3	4114	genome.wustl.edu	37	X	30254163	30254163	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002365.4	+1	reviewed	p.S41*	0.002	104	0%	77	23.4%	0	-	-	-	-	NULL
GK	2710	genome.wustl.edu	37	X	30671720	30671720	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001128127.1	+1	reviewed	p.S22	0.999	80	0%	121	14.9%	1	0%	-	-	-	HMMPfam_FGGY_N,superfamily_SSF53067
GK	2710	genome.wustl.edu	37	X	30712651	30712651	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001128127.1	+1	reviewed	p.I183M	0.994	318	0%	244	19.7%	3	0%	possibly_damaging(0.789)	tolerated(0.08)	deleterious(0.596)	HMMPfam_FGGY_N,superfamily_SSF53067
DMD	1756	genome.wustl.edu	37	X	31697697	31697697	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004006.2	-1	reviewed	p.R2556I	1.000	536	0%	443	20.1%	0	-	possibly_damaging(0.708)	deleterious(0)	deleterious(0.700)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
DMD	1756	genome.wustl.edu	37	X	31747750	31747750	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004006.2	-1	reviewed	p.R2553Q	1.000	579	0%	667	26.8%	0	-	probably_damaging(1)	tolerated(0.09)	deleterious(0.796)	HMMPfam_Spectrin,HMMSmart_SM00150,superfamily_Spectrin repeat
TMEM47	83604	genome.wustl.edu	37	X	34648532	34648532	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031442.3	-1	reviewed	p.E148	1.000	439	0%	481	23.5%	2	0%	-	-	-	NULL
CXorf30	645090	genome.wustl.edu	37	X	36371748	36371748	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001098843.3	+1	validated	p.L381V	0.000	313	0%	400	26%	0	-	benign(0.001)	tolerated(0.64)	neutral(0.003)	NULL
SRPX	8406	genome.wustl.edu	37	X	38009077	38009077	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006307.4	-1	validated	p.R428C	1.000	209	0%	243	28.8%	4	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
TSPAN7	7102	genome.wustl.edu	37	X	38540529	38540529	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004615.3	+1	reviewed	p.I223	0.133	306	0%	304	31.2%	9	0%	-	-	-	HMMPfam_Tetraspannin
BCOR	54880	genome.wustl.edu	37	X	39921606	39921606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001123385.1	-1	reviewed	p.S1405L	0.174	187	0%	165	26.7%	9	11.1%	benign(0.001)	deleterious(0.01)	neutral(0.406)	NULL
MED14	9282	genome.wustl.edu	37	X	40551443	40551443	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004229.3	-1	reviewed	p.R658W	1.000	457	0%	508	29.9%	10	30%	probably_damaging(0.972)	deleterious(0.01)	deleterious(0.820)	NULL
USP9X	8239	genome.wustl.edu	37	X	41029255	41029255	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001039590.2	+1	reviewed	p.R882C	1.000	358	0%	408	29.4%	12	41.6%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
USP9X	8239	genome.wustl.edu	37	X	41075316	41075316	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001039590.2	+1	reviewed	p.V1832	0.996	276	0%	366	24.3%	35	37.1%	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
NDP	4693	genome.wustl.edu	37	X	43817752	43817752	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000266.3	-1	reviewed	p.S47Y	1.000	273	0%	307	21.5%	7	0%	possibly_damaging(0.681)	deleterious(0)	deleterious(0.688)	HMMSmart_SM00041
PHF16	9767	genome.wustl.edu	37	X	46913821	46913821	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001077445.1	+1	reviewed	p.R412*	0.000	105	0%	131	23.7%	2	0%	-	-	-	NULL
NDUFB11	54539	genome.wustl.edu	37	X	47001817	47001817	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_019056.5	-1	validated	p.E131K	1.000	266	0%	292	24.7%	327	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ESSS
RBM10	8241	genome.wustl.edu	37	X	47044742	47044742	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005676.3	+1	reviewed	p.P714	0.047	138	0.7%	149	24.8%	49	0%	-	-	-	NULL
SYN1	6853	genome.wustl.edu	37	X	47434605	47434605	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006950.3	-1	reviewed	p.L409	0.374	62	0%	72	16.7%	1	0%	-	-	-	HMMPfam_Synapsin_C,superfamily_Glutathione synthetase ATP-binding domain-like
ZNF182	7569	genome.wustl.edu	37	X	47861999	47861999	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001007088.1	-1	reviewed	p.P4S	0.000	243	0%	338	24.6%	1	0%	possibly_damaging(0.771)	tolerated(0.53)	neutral(0.294)	superfamily_Krueppel-associated_box
SSX3	10214	genome.wustl.edu	37	X	48214093	48214093	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_021014.2	-1	reviewed	p.R53I	0.983	1072	0%	1395	23.4%	0	-	benign(0.028)	deleterious(0.02)	neutral(0.385)	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box
SLC38A5	92745	genome.wustl.edu	37	X	48325462	48325462	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033518.2	-1	validated	p.F44	0.997	107	0%	107	25.2%	2	0%	-	-	-	NULL
SLC38A5	92745	genome.wustl.edu	37	X	48326172	48326172	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033518.2	-1	validated	p.G18	0.724	144	0%	157	17.2%	3	0%	-	-	-	NULL
SLC35A2	7355	genome.wustl.edu	37	X	48767197	48767197	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005660.1	-1	provisional	p.Y56	0.228	155	0%	178	34.8%	29	0%	-	-	-	NULL
ENSG00000223309	0	genome.wustl.edu	37	X	48816516	48816516	+	RNA	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000411377	-1	known	NULL	0.007	313	0%	334	27.8%	0	-	-	-	-	-
GPKOW	27238	genome.wustl.edu	37	X	48970633	48970633	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015698.4	-1	validated	p.E453*	0.986	379	0%	379	24%	22	0%	-	-	-	NULL
GPKOW	27238	genome.wustl.edu	37	X	48978770	48978770	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015698.4	-1	validated	p.D145A	0.493	95	0%	88	23.9%	23	82.6%	probably_damaging(0.959)	tolerated(0.07)	deleterious(0.722)	NULL
CACNA1F	778	genome.wustl.edu	37	X	49071877	49071877	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005183.2	-1	reviewed	p.F1132	0.989	353	0%	367	27.8%	1	0%	-	-	-	HMMPfam_Ion_trans,superfamily_Voltage-gated potassium channels
CLCN5	1184	genome.wustl.edu	37	X	49834631	49834631	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001127898.1	+1	reviewed	p.F87	1.000	359	0%	386	25.6%	0	-	-	-	-	NULL
AKAP4	8852	genome.wustl.edu	37	X	49955615	49955615	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003886.2	-1	reviewed	p.L851	0.662	211	0%	233	24.9%	0	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
AKAP4	8852	genome.wustl.edu	37	X	49957288	49957288	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003886.2	-1	reviewed	p.A692	0.998	285	0%	306	22.9%	0	-	-	-	-	HMMPfam_AKAP_110,HMMSmart_SM00807
CCNB3	85417	genome.wustl.edu	37	X	50051847	50051847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033031.2	+1	reviewed	p.K226N	0.000	75	0%	109	23.9%	0	-	benign(0.001)	deleterious(0)	neutral(0.445)	NULL
BMP15	9210	genome.wustl.edu	37	X	50653980	50653980	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005448.2	+1	reviewed	p.S66*	0.004	98	0%	95	30.5%	0	-	-	-	-	NULL
BMP15	9210	genome.wustl.edu	37	X	50659068	50659068	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005448.2	+1	reviewed	p.D214Y	0.001	280	0%	311	22.5%	0	-	possibly_damaging(0.924)	tolerated(0.21)	neutral(0.417)	NULL
MAGED1	9500	genome.wustl.edu	37	X	51639541	51639541	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001005333.1	+1	reviewed	p.D320N	0.999	45	0%	49	30.6%	73	0%	probably_damaging(0.995)	deleterious(0)	deleterious(0.902)	NULL
HUWE1	10075	genome.wustl.edu	37	X	53566025	53566025	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000427052	-1	known	p.R2917*	0.013	130	0%	135	22.2%	55	61.8%	-	-	-	NULL
HUWE1	10075	genome.wustl.edu	37	X	53634626	53634626	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031407.4	-1	reviewed	p.T785I	1.000	380	0%	359	25.6%	5	40%	possibly_damaging(0.916)	tolerated(0.05)	deleterious(0.712)	HMMPfam_DUF913
WNK3	65267	genome.wustl.edu	37	X	54228451	54228451	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020922.4	-1	reviewed	p.E1682D	0.959	656	0%	873	25.3%	0	-	probably_damaging(0.987)	tolerated(0.06)	deleterious(0.759)	NULL
WNK3	65267	genome.wustl.edu	37	X	54263821	54263821	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020922.4	-1	reviewed	p.S1393L	0.000	415	0%	395	27.3%	0	-	benign(0.273)	deleterious(0.01)	neutral(0.435)	NULL
TSR2	90121	genome.wustl.edu	37	X	54470891	54470891	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_058163.1	+1	provisional	p.P162S	0.000	276	0%	290	25.2%	49	0%	benign(0.002)	tolerated(0.8)	neutral(0.001)	NULL
ITIH6	347365	genome.wustl.edu	37	X	54777672	54777672	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198510.2	-1	reviewed	p.S1165Y	0.000	240	0%	318	23.6%	0	-	benign(0.032)	deleterious(0.01)	neutral(0.407)	HMMPfam_ITI_HC_C
ITIH6	347365	genome.wustl.edu	37	X	54783521	54783521	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198510.2	-1	reviewed	p.A996T	0.044	264	0%	271	28%	0	-	possibly_damaging(0.915)	-	-	NULL
ITIH6	347365	genome.wustl.edu	37	X	54800571	54800571	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198510.2	-1	reviewed	p.K282N	0.965	173	0%	207	27.5%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMSmart_VWA,superfamily_SSF53300
ITIH6	347365	genome.wustl.edu	37	X	54814929	54814929	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_198510.2	-1	reviewed	p.I257S	0.902	266	0%	280	24.6%	0	-	benign(0.15)	tolerated(0.89)	neutral(0.013)	NULL
MAGED2	10916	genome.wustl.edu	37	X	54837722	54837722	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014599.4	+1	reviewed	p.T296P	0.993	472	0%	459	28.8%	78	0%	probably_damaging(0.999)	deleterious(0.03)	deleterious(0.855)	HMMPfam_MAGE
APEX2	27301	genome.wustl.edu	37	X	55028008	55028008	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014481.2	+1	reviewed	p.V63I	0.517	156	0%	137	31.4%	12	66.6%	benign(0.137)	tolerated(0.14)	neutral(0.261)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
APEX2	27301	genome.wustl.edu	37	X	55033053	55033053	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014481.2	+1	reviewed	p.R248C	1.000	102	0%	91	26.4%	16	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Exo_endo_phos,superfamily_Exo_endo_phos
PAGE3	139793	genome.wustl.edu	37	X	55289729	55289729	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000374951	-1	known	p.Y50D	0.001	592	0%	665	26.2%	0	-	possibly_damaging(0.799)	tolerated(0.21)	neutral(0.345)	HMMPfam_GAGE
RRAGB	10325	genome.wustl.edu	37	X	55757864	55757864	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016656.3	+1	validated	p.L149M	1.000	199	0%	208	20.2%	13	0%	benign(0.09)	tolerated(0.16)	neutral(0.066)	superfamily_P-loop containing nucleoside triphosphate hydrolases
ZXDB	158586	genome.wustl.edu	37	X	57619915	57619915	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_007157.3	+1	validated	p.H478	1.000	236	0%	207	26.6%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
SPIN4	139886	genome.wustl.edu	37	X	62570024	62570024	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001012968.2	-1	validated	p.A225	0.995	156	0%	197	21.8%	2	0%	-	-	-	HMMPfam_Spin-Ssty
ASB12	142689	genome.wustl.edu	37	X	63445393	63445393	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_130388.2	-1	reviewed	p.N37	0.154	159	0%	179	24%	0	-	-	-	-	superfamily_ANK
LAS1L	81887	genome.wustl.edu	37	X	64749525	64749525	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031206.4	-1	validated	p.E250K	0.047	497	0%	457	24.9%	15	0%	benign(0.001)	tolerated(1)	-	NULL
LOC100129144	100129144	genome.wustl.edu	37	X	66594454	66594454	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001721427.1	+1	model	p.E163K	0.971	74	0%	124	32.3%	0	-	-	-	-	HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
OPHN1	4983	genome.wustl.edu	37	X	67430067	67430067	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002547.2	-1	reviewed	p.K254E	1.000	872	0%	995	28%	0	-	possibly_damaging(0.796)	tolerated(0.1)	deleterious(0.585)	superfamily_SSF50729
YIPF6	286451	genome.wustl.edu	37	X	67731808	67731808	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173834.2	+1	provisional	p.R59C	1.000	372	0%	437	20.6%	9	0%	probably_damaging(0.996)	deleterious(0.02)	deleterious(0.845)	NULL
PJA1	64219	genome.wustl.edu	37	X	68382283	68382283	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145119.3	-1	reviewed	p.N267H	0.012	134	0%	123	24.4%	9	0%	benign(0.429)	deleterious(0)	deleterious(0.584)	NULL
FAM155B	27112	genome.wustl.edu	37	X	68725597	68725597	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015686.2	+1	validated	p.E158K	0.315	77	0%	31	19.4%	0	-	benign(0.15)	tolerated(0.31)	neutral(0.040)	NULL
NLGN3	54413	genome.wustl.edu	37	X	70373340	70373340	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018977.3	+1	reviewed	p.K157N	1.000	309	0%	380	28.7%	1	0%	benign(0.408)	deleterious(0.03)	deleterious(0.496)	HMMPfam_COesterase,superfamily_SSF53474
TAF1	6872	genome.wustl.edu	37	X	70587976	70587976	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004606.3	+1	reviewed	p.R123I	1.000	352	0%	416	22.6%	3	0%	possibly_damaging(0.465)	tolerated(0.09)	neutral(0.450)	NULL
OGT	8473	genome.wustl.edu	37	X	70782801	70782801	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_181672.2	+1	reviewed	p.E694	1.000	388	0%	396	25.5%	20	0%	-	-	-	NULL
ACRC	93953	genome.wustl.edu	37	X	70817887	70817887	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_052957.4	+1	validated	p.D103	0.066	352	0%	420	27.6%	0	-	-	-	-	NULL
NHSL2	340527	genome.wustl.edu	37	X	71359952	71359952	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001013627.2	+1	provisional	p.E486K	0.980	186	0%	208	24.5%	0	-	possibly_damaging(0.942)	tolerated(0.71)	neutral(0.389)	NULL
ERCC6L	54821	genome.wustl.edu	37	X	71426540	71426540	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017669.2	-1	validated	p.E693*	0.123	232	0%	192	26%	1	0%	-	-	-	NULL
RLIM	51132	genome.wustl.edu	37	X	73812450	73812450	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016120.3	-1	reviewed	p.P234A	0.973	323	0.3%	307	27.7%	5	0%	benign(0.004)	tolerated(0.43)	neutral(0.013)	NULL
KIAA2022	340533	genome.wustl.edu	37	X	73960158	73960158	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001008537.2	-1	validated	p.R1412C	0.606	359	0%	401	29.7%	0	-	possibly_damaging(0.909)	deleterious(0.01)	deleterious(0.768)	NULL
UPRT	139596	genome.wustl.edu	37	X	74494389	74494389	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_145052.3	+1	reviewed	p.C100	0.024	54	0%	64	21.9%	2	0%	-	-	-	superfamily_PRTase-like
ZDHHC15	158866	genome.wustl.edu	37	X	74641764	74641764	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_144969.2	-1	reviewed	p.F266L	0.825	404	0%	439	26%	0	-	benign(0)	tolerated(0.72)	neutral(0.002)	NULL
ATRX	546	genome.wustl.edu	37	X	76889096	76889096	+	Silent	SNP	A	A	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000489.3	-1	reviewed	p.F1638	1.000	142	0%	158	12%	4	0%	-	-	-	HMMPfam_SNF2_N,HMMSmart_SM00487,superfamily_P-loop containing nucleoside triphosphate hydrolases
ATRX	546	genome.wustl.edu	37	X	76938927	76938927	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000489.3	-1	reviewed	p.E607D	0.309	111	0%	155	25.8%	3	66.6%	benign(0)	deleterious(0.03)	neutral(0.364)	NULL
PGAM4	441531	genome.wustl.edu	37	X	77224481	77224481	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001029891.2	-1	reviewed	p.E219*	1.000	167	0%	258	26.4%	0	-	-	-	-	superfamily_SSF53254
LOC100289421	100289421	genome.wustl.edu	37	X	77359755	77359755	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002343831.1	-1	model	p.E62K	0.000	45	0%	45	28.9%	6	0%	-	-	-	NULL
CYSLTR1	10800	genome.wustl.edu	37	X	77528306	77528306	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006639.2	-1	reviewed	p.S313Y	1.000	189	0%	199	31.7%	3	0%	probably_damaging(0.999)	deleterious(0.01)	deleterious(0.896)	NULL
LPAR4	2846	genome.wustl.edu	37	X	78011219	78011219	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005296.2	+1	reviewed	p.L285V	0.946	508	0%	510	14.3%	0	-	benign(0)	tolerated(1)	-	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
ITM2A	9452	genome.wustl.edu	37	X	78616844	78616844	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004867.4	-1	reviewed	p.R229C	0.986	175	0%	184	26.6%	29	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
RPS6KA6	27330	genome.wustl.edu	37	X	83400507	83400507	+	Silent	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014496.4	-1	reviewed	p.V160	0.999	292	0%	321	32.4%	0	-	-	-	-	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase
KLHL4	56062	genome.wustl.edu	37	X	86773235	86773235	+	Missense_Mutation	SNP	G	G	T	rs186431341	by1000genomes	TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_057162.2	+1	reviewed	p.K113N	0.146	109	0%	109	27.5%	0	-	benign(0.001)	tolerated(0.55)	neutral(0.007)	NULL
SYTL4	94121	genome.wustl.edu	37	X	99934361	99934361	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001129896.2	-1	reviewed	p.K536T	1.000	309	0%	293	30.4%	2	0%	probably_damaging(0.99)	deleterious(0)	deleterious(0.886)	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)
CENPI	2491	genome.wustl.edu	37	X	100402751	100402751	+	Splice_Site	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_006733.2	+1	reviewed	e17-1	1.000	325	0%	345	17.4%	0	-	-	-	-	-
DRP2	1821	genome.wustl.edu	37	X	100513302	100513302	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001939.2	+1	reviewed	p.L799F	1.000	89	0%	89	23.6%	0	-	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	NULL
ZMAT1	84460	genome.wustl.edu	37	X	101139732	101139732	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001011657.2	-1	reviewed	p.E223*	0.045	425	0%	415	11.3%	7	0%	-	-	-	NULL
NXF2	56001	genome.wustl.edu	37	X	101572404	101572404	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017809.3	+1	reviewed	p.T101M	0.001	678	0%	605	12.2%	0	-	benign(0.017)	tolerated(0.34)	neutral(0.024)	NULL
GPRASP2	114928	genome.wustl.edu	37	X	101971700	101971700	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001004051.2	+1	reviewed	p.R635*	0.963	473	0.2%	450	30.9%	1	0%	-	-	-	HMMPfam_DUF634
BEX1	55859	genome.wustl.edu	37	X	102317886	102317886	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018476.3	-1	validated	p.R106Q	0.014	423	0%	492	29.7%	5	0%	benign(0.056)	deleterious(0)	neutral(0.448)	HMMPfam_BEX
NGFRAP1	27018	genome.wustl.edu	37	X	102632525	102632525	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_206915.1	+1	validated	p.R36*	0.001	302	0%	377	29.7%	136	76.4%	-	-	-	HMMPfam_BEX
H2BFM	286436	genome.wustl.edu	37	X	103295410	103295410	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_001723437.2	+1	model	p.A251	0.000	741	0.1%	887	28%	0	-	-	-	-	superfamily_Histone-fold
CXorf57	55086	genome.wustl.edu	37	X	105881011	105881011	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018015.5	+1	validated	p.T477M	0.006	200	0%	214	11.2%	0	-	probably_damaging(0.996)	tolerated(0.23)	deleterious(0.503)	NULL
TBC1D8B	54885	genome.wustl.edu	37	X	106065412	106065412	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_017752.2	+1	validated	p.S189Y	1.000	580	0.2%	598	25.6%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_GRAM,HMMSmart_SM00568
MID2	11043	genome.wustl.edu	37	X	107084109	107084109	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_012216.3	+1	reviewed	p.T72P	0.992	229	0%	215	25.1%	1	0%	benign(0)	deleterious(0.04)	neutral(0.349)	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box
GUCY2F	2986	genome.wustl.edu	37	X	108625403	108625403	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001522.2	-1	reviewed	p.L1032F	1.000	274	0%	387	27.6%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Guanylate_cyc,HMMSmart_SM00044,superfamily_Adenylyl and guanylyl cyclase catalytic domain
GUCY2F	2986	genome.wustl.edu	37	X	108691390	108691390	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001522.2	-1	reviewed	p.R493C	0.300	430	0%	466	30.5%	0	-	possibly_damaging(0.729)	deleterious(0.04)	deleterious(0.615)	NULL
ACSL4	2182	genome.wustl.edu	37	X	108926400	108926400	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_022977.2	-1	reviewed	p.N106H	1.000	463	0%	428	31.3%	6	83.3%	possibly_damaging(0.903)	deleterious(0.02)	deleterious(0.741)	superfamily_Acetyl-CoA synthetase-like
RGAG1	57529	genome.wustl.edu	37	X	109697238	109697238	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020769.2	+1	validated	p.A1131	0.000	272	0%	306	26.5%	0	-	-	-	-	NULL
RGAG1	57529	genome.wustl.edu	37	X	109697521	109697521	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020769.2	+1	validated	p.Y1226H	0.994	213	0%	183	26.2%	0	-	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	NULL
ALG13	79868	genome.wustl.edu	37	X	110970087	110970087	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000394780	+1	known	p.R594*	1.000	205	0%	282	26.6%	0	-	-	-	-	NULL
LRCH2	57631	genome.wustl.edu	37	X	114400881	114400881	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020871.3	-1	validated	p.K341N	1.000	203	0%	208	26%	0	-	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	NULL
RBMXL3	139804	genome.wustl.edu	37	X	114424789	114424789	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001145346.1	+1	validated	p.R262H	0.000	25	0%	24	41.7%	0	-	possibly_damaging(0.485)	tolerated(0.08)	neutral(0.461)	NULL
LRCH2	57631	genome.wustl.edu	37	X	114468442	114468442	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_020871.3	-1	validated	p.L55I	1.000	31	0%	18	27.8%	0	-	possibly_damaging(0.454)	tolerated(0.21)	neutral(0.193)	superfamily_SSF52058
KLHL13	90293	genome.wustl.edu	37	X	117043591	117043591	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_033495.3	-1	reviewed	p.G347*	1.000	241	0%	249	26.9%	0	-	-	-	-	HMMSmart_SM00612,superfamily_Galactose oxidase central domain
SEPT6	23157	genome.wustl.edu	37	X	118763286	118763286	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_015129.5	-1	reviewed	p.K425N	1.000	320	0%	241	22.8%	27	0%	benign(0.317)	deleterious(0)	deleterious(0.543)	NULL
RHOXF2	84528	genome.wustl.edu	37	X	119294300	119294300	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_032498.1	+1	provisional	p.L176	0.001	631	0%	700	13%	0	-	-	-	-	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1
ATP1B4	23439	genome.wustl.edu	37	X	119509348	119509348	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001142447.2	+1	reviewed	p.K228N	1.000	308	0%	308	26.9%	0	-	possibly_damaging(0.553)	tolerated(0.12)	neutral(0.449)	HMMPfam_Na_K-ATPase,PatternScan_ATPASE_NA_K_BETA_2
MCTS1	28985	genome.wustl.edu	37	X	119739328	119739328	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001137554.1	+1	validated	p.K27N	1.000	133	0.8%	212	14.6%	56	0%	probably_damaging(0.997)	deleterious(0)	deleterious(0.911)	NULL
GRIA3	2892	genome.wustl.edu	37	X	122460032	122460032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000264357	+1	known	p.E222K	1.000	204	0%	303	26.1%	0	-	probably_damaging(0.991)	tolerated(0.06)	deleterious(0.766)	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I
THOC2	57187	genome.wustl.edu	37	X	122756977	122756977	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001081550.1	-1	validated	p.E1221*	1.000	238	0%	230	28.7%	14	0%	-	-	-	NULL
ODZ1	10178	genome.wustl.edu	37	X	123637512	123637512	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014253.3	-1	reviewed	p.L1115I	1.000	310	0%	406	17.2%	0	-	probably_damaging(0.97)	tolerated(0.22)	neutral(0.454)	NULL
ODZ1	10178	genome.wustl.edu	37	X	123787478	123787478	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_014253.3	-1	reviewed	p.L442M	0.681	362	0.3%	395	20.8%	0	-	probably_damaging(0.974)	deleterious(0.03)	deleterious(0.780)	NULL
CXorf64	100130613	genome.wustl.edu	37	X	125955325	125955325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001122716.1	+1	validated	p.T235I	0.000	418	0%	471	28.7%	0	-	possibly_damaging(0.931)	tolerated(0.53)	neutral(0.385)	NULL
OCRL	4952	genome.wustl.edu	37	X	128703343	128703343	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000276.3	+1	reviewed	p.D523	1.000	249	0%	359	24.8%	6	0%	-	-	-	HMMSmart_SM00128,HMMPfam_Exo_endo_phos,superfamily_DNase I-like
RAB33A	9363	genome.wustl.edu	37	X	129306243	129306243	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004794.2	+1	reviewed	p.I69	1.000	93	0%	95	20%	1	0%	-	-	-	HMMSmart_RAB,HMMPfam_Ras,superfamily_SSF52540
HS6ST2	90161	genome.wustl.edu	37	X	131762344	131762344	+	Silent	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001077188.1	-1	reviewed	p.R615	0.011	749	0%	736	27.6%	6	100%	-	-	-	NULL
USP26	83844	genome.wustl.edu	37	X	132161660	132161660	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_031907.1	-1	reviewed	p.E197*	0.000	258	0%	264	25.8%	0	-	-	-	-	NULL
TFDP3	51270	genome.wustl.edu	37	X	132352254	132352254	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_016521.2	-1	reviewed	p.E12K	0.424	171	0%	156	18.6%	0	-	benign(0)	deleterious(0.01)	neutral(0.406)	NULL
GPC3	2719	genome.wustl.edu	37	X	132833996	132833996	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004484.3	-1	reviewed	p.D365Y	1.000	227	0%	256	24.2%	2	0%	possibly_damaging(0.679)	tolerated(0.09)	deleterious(0.538)	HMMPfam_Glypican
MIR424	494336	genome.wustl.edu	37	X	133680666	133680666	+	RNA	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000362227	-1	known	NULL	0.602	54	0%	68	48.5%	0	-	-	-	-	-
ZNF449	203523	genome.wustl.edu	37	X	134494859	134494859	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_152695.5	+1	reviewed	p.F472C	1.000	191	0%	191	23.6%	2	50%	probably_damaging(0.996)	deleterious(0)	deleterious(0.906)	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
LOC644717	644717	genome.wustl.edu	37	X	134772024	134772024	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	XM_002343850.1	-1	model	p.E972D	0.014	8	0.000	12	0.333	0	-	-	-	-	NULL
SAGE1	55511	genome.wustl.edu	37	X	134994053	134994053	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018666.2	+1	reviewed	p.K821T	0.004	90	0%	81	28.4%	0	-	probably_damaging(0.962)	deleterious(0.01)	deleterious(0.810)	NULL
MMGT1	93380	genome.wustl.edu	37	X	135047286	135047286	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173470.1	-1	provisional	p.R98Q	1.000	324	0%	448	26.6%	1	100%	probably_damaging(0.973)	tolerated(0.05)	deleterious(0.760)	HMMPfam_Tmemb_32
GPR112	139378	genome.wustl.edu	37	X	135455146	135455146	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_153834.3	+1	reviewed	p.A2567T	0.979	345	0%	361	19.9%	0	-	possibly_damaging(0.95)	deleterious(0.01)	deleterious(0.799)	NULL
ZIC3	7547	genome.wustl.edu	37	X	136649783	136649783	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003413.3	+1	reviewed	p.A311	1.000	63	0%	55	32.7%	0	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
MCF2	4168	genome.wustl.edu	37	X	138667233	138667233	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001099855.1	-1	reviewed	p.P973S	0.000	474	0%	433	22.4%	0	-	benign(0.001)	tolerated(0.36)	neutral(0.020)	NULL
ATP11C	286410	genome.wustl.edu	37	X	138856925	138856925	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173694.4	-1	validated	p.R717*	1.000	450	0%	494	17.2%	0	-	-	-	-	superfamily_HAD-like
MAGEC3	139081	genome.wustl.edu	37	X	140984463	140984463	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_177456.2	+1	reviewed	p.R9C	0.000	327	0%	334	25.4%	0	-	unknown(0)	tolerated(0.08)	-	NULL
MAGEC1	9947	genome.wustl.edu	37	X	140993798	140993798	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005462.4	+1	reviewed	p.S203N	0.989	700	0%	519	16%	0	-	unknown(0)	deleterious(0)	-	NULL
SLITRK4	139065	genome.wustl.edu	37	X	142717556	142717556	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_173078.3	-1	reviewed	p.E457K	1.000	127	0%	119	33.6%	1	0%	probably_damaging(0.998)	deleterious(0)	deleterious(0.919)	HMMPfam_LRR_1,HMMSmart_SM00369,superfamily_L domain-like
UBE2NL	389898	genome.wustl.edu	37	X	142967583	142967583	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001012989.1	+1	reviewed	p.V127	1.000	336	0%	493	32.9%	0	-	-	-	-	HMMPfam_UQ_con,HMMSmart_UBCc,superfamily_UBQ-conjugat/RWD-like
FMR1	2332	genome.wustl.edu	37	X	147018105	147018105	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002024.5	+1	reviewed	p.E321D	1.000	682	0%	822	29%	13	76.9%	probably_damaging(0.995)	tolerated(1)	neutral(0.458)	HMMSmart_SM00322,HMMPfam_KH_1,superfamily_Eukaryotic type KH-domain (KH-domain type I)
AFF2	2334	genome.wustl.edu	37	X	148044460	148044460	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002025.3	+1	reviewed	p.S969L	0.992	221	0%	223	27.8%	0	-	possibly_damaging(0.658)	tolerated(0.06)	deleterious(0.555)	HMMPfam_AF-4
AFF2	2334	genome.wustl.edu	37	X	148059504	148059504	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002025.3	+1	reviewed	p.S1149L	0.998	416	0%	444	30%	1	0%	possibly_damaging(0.662)	deleterious(0.01)	deleterious(0.640)	HMMPfam_AF-4
MTM1	4534	genome.wustl.edu	37	X	149831928	149831928	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000252.2	+1	reviewed	p.S497Y	0.999	111	0%	96	19.8%	1	0%	benign(0.22)	deleterious(0.04)	neutral(0.370)	superfamily_SSF52799
PRRG3	79057	genome.wustl.edu	37	X	150869466	150869466	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_024082.3	+1	validated	p.Y219	0.996	139	0%	138	25.4%	0	-	-	-	-	NULL
MAGEA4	4103	genome.wustl.edu	37	X	151093032	151093032	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001011548.1	+1	reviewed	p.R299H	0.001	140	0%	140	37.9%	0	-	benign(0.004)	tolerated(0.22)	neutral(0.042)	NULL
GABRA3	2556	genome.wustl.edu	37	X	151336934	151336934	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000808.3	-1	reviewed	p.T415	1.000	715	0%	806	19.2%	0	-	-	-	-	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM
PNMA3	29944	genome.wustl.edu	37	X	152226304	152226304	+	Silent	SNP	T	T	C	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_013364.4	+1	reviewed	p.L298	0.000	178	0%	185	29.2%	0	-	-	-	-	NULL
ZFP92	139735	genome.wustl.edu	37	X	152686248	152686248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001136273.1	+1	validated	p.S138L	0.000	75	0%	82	28%	0	-	-	-	-	NULL
DUSP9	1852	genome.wustl.edu	37	X	152915045	152915045	+	Silent	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	ENST00000433144	+1	known	p.S215L	0.201	134	0%	107	23.4%	0	-	-	-	-	HMMPfam_DSPc,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II
SLC6A8	6535	genome.wustl.edu	37	X	152958595	152958595	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005629.3	+1	reviewed	p.L293F	1.000	275	0%	225	26.2%	35	0%	benign(0.009)	deleterious(0)	neutral(0.445)	HMMPfam_SNF
PLXNB3	5365	genome.wustl.edu	37	X	153032621	153032621	+	Silent	SNP	T	T	G	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_005393.2	+1	reviewed	p.T113	0.109	48	0%	42	23.8%	1	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
L1CAM	3897	genome.wustl.edu	37	X	153130606	153130606	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000425.3	-1	reviewed	p.R937C	0.737	22	0%	36	16.7%	0	-	benign(0.389)	tolerated(0.13)	neutral(0.377)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
MECP2	4204	genome.wustl.edu	37	X	153297782	153297782	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001110792.1	-1	reviewed	p.R97C	1.000	130	0%	95	17.9%	21	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	superfamily_DNA-binding_integrase-type
FLNA	2316	genome.wustl.edu	37	X	153578219	153578219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_001110556.1	-1	reviewed	p.F2450L	0.966	74	0%	62	16.1%	264	0.3%	probably_damaging(0.998)	tolerated(0.07)	deleterious(0.793)	HMMSmart_SM00557,superfamily_E set domains,HMMPfam_Filamin
FAM50A	9130	genome.wustl.edu	37	X	153678065	153678065	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_004699.2	+1	reviewed	p.E254D	1.000	138	0%	101	22.8%	166	0%	probably_damaging(1)	deleterious(0.01)	deleterious(0.905)	HMMPfam_XAP5
MPP1	4354	genome.wustl.edu	37	X	154009908	154009908	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_002436.3	-1	reviewed	p.Q372H	0.987	405	0%	434	30.6%	15	0%	benign(0.001)	tolerated(0.1)	neutral(0.286)	HMMPfam_Guanylate_kin,HMMSmart_SM00072,superfamily_P-loop containing nucleoside triphosphate hydrolases
F8	2157	genome.wustl.edu	37	X	154185319	154185319	+	Silent	SNP	G	G	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_000132.3	-1	reviewed	p.F555	0.759	492	0.2%	560	26.4%	0	-	-	-	-	superfamily_Cupredoxins
VBP1	7411	genome.wustl.edu	37	X	154448519	154448519	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_003372.5	+1	reviewed	p.K51N	1.000	144	0%	109	17.4%	7	0%	possibly_damaging(0.628)	tolerated(0.1)	deleterious(0.505)	superfamily_Prefoldin
TMLHE	55217	genome.wustl.edu	37	X	154721240	154721240	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-B5-A11N-01A-11D-A122-09	TCGA-B5-A11N-10A-01D-A122-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a90f8d20-4d17-4084-ad0f-5dc5042ca695	df73c2f3-0c35-4aec-82c4-f4ee268636f0	NM_018196.3	-1	reviewed	p.D408Y	1.000	154	0%	145	11%	15	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TauD,superfamily_Clavaminate synthase-like
