Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGXT2	64902	genome.wustl.edu	37	5	35013131	35013131	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	5	35013131	35013131	C	T	SNP	AGXT2	NM_031900.3	human	genbank	58_37c	-1	reviewed	silent	c.1116	p.A372	0.272	HMMPfam_Aminotran_3,superfamily_PyrdxlP-dep_Trfase_major	HMMPfam_Aminotran_3,PatternScan_AA_TRANSFER_CLASS_3,superfamily_PyrdxlP-dep_Trfase_major	-	no_errors
ATAD2	29028	genome.wustl.edu	37	8	124358377	124358377	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	8	124358377	124358377	A	C	SNP	ATAD2	NM_014109.3	human	genbank	58_37c	-1	reviewed	missense	c.2481	p.I827M	1.000	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00382,HMMPfam_AAA,PatternScan_AAA,HMMPfam_YL1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ATP8B2	57198	genome.wustl.edu	37	1	154303935	154303935	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	154303935	154303935	G	A	SNP	ATP8B2	NM_020452.3	human	genbank	58_37c	+1	reviewed	missense	c.418	p.D140N	1.000	superfamily_SSF81665	HMMPfam_E1-E2_ATPase,HMMPfam_Hydrolase_3,PatternScan_ATPASE_E1_E2,superfamily_SSF56784,superfamily_SSF81653,superfamily_SSF81660,superfamily_SSF81665	-	no_errors
CYP4Z1	199974	genome.wustl.edu	37	1	47533338	47533338	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	47533338	47533338	A	C	SNP	CYP4Z1	NM_178134.2	human	genbank	58_37c	+1	reviewed	missense	c.176	p.E59A	0.060	HMMPfam_p450,superfamily_Cytochrome_P450	HMMPfam_p450,superfamily_Cytochrome_P450,PatternScan_CYTOCHROME_P450	-	no_errors
DLK1	8788	genome.wustl.edu	37	14	101201147	101201147	+	Missense_Mutation	SNP	G	G	A	rs146800507	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	14	101201147	101201147	G	A	SNP	DLK1	NM_003836.5	human	genbank	58_37c	+1	reviewed	missense	c.1066	p.G356R	1.000	NULL	PatternScan_ASX_HYDROXYL,HMMSmart_SM00179,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_EGF/Laminin	-	no_errors
FCGR2B	2213	genome.wustl.edu	37	1	161641360	161641360	+	Silent	SNP	C	C	T	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	161641360	161641360	C	T	SNP	FCGR2B	NM_004001.3	human	genbank	58_37c	+1	validated	silent	c.312	p.N104	0.000	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
GRIK2	2898	genome.wustl.edu	37	6	102337557	102337557	+	Nonsense_Mutation	SNP	C	C	T	rs140472463	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	6	102337557	102337557	C	T	SNP	GRIK2	NM_021956.4	human	genbank	58_37c	+1	reviewed	nonsense	c.1567	p.R523*	1.000	HMMSmart_SM00079,superfamily_Periplasmic binding protein-like II	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
IFT80	57560	genome.wustl.edu	37	3	160095282	160095282	+	Silent	SNP	T	T	A	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	3	160095282	160095282	T	A	SNP	IFT80	NM_020800.1	human	genbank	58_37c	-1	validated	silent	c.306	p.V102	0.850	HMMSmart_WD40,superfamily_WD40_like,HMMPfam_WD40	HMMSmart_WD40,superfamily_WD40_like,superfamily_Cyt_cd1_haem_C,HMMPfam_WD40	-	no_errors
KCTD3	51133	genome.wustl.edu	37	1	215759936	215759936	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	215759936	215759936	C	T	SNP	KCTD3	NM_016121.3	human	genbank	58_37c	+1	validated	missense	c.725	p.P242L	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00225,HMMSmart_SM00320,HMMPfam_K_tetra,superfamily_WD40 repeat-like,superfamily_POZ domain,PatternScan_WD_REPEATS_1	-	no_errors
KIAA0182	23199	genome.wustl.edu	37	16	85701963	85701963	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	16	85701963	85701963	G	-	DEL	KIAA0182	NM_014615.2	human	genbank	58_37c	+1	validated	frame_shift_del	c.3348	p.E1117fs	0.370	NULL	NULL	-	no_errors
MAP2K4	6416	genome.wustl.edu	37	17	11998898	11998898	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	17	11998898	11998898	C	T	SNP	MAP2K4	NM_003010.2	human	genbank	58_37c	+1	reviewed	missense	c.400	p.R134W	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MLL3	58508	genome.wustl.edu	37	7	151945601	151945601	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	7	151945601	151945601	C	A	SNP	MLL3	NM_170606.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1918	p.E640*	0.108	NULL	PatternScan_HMGI_Y,HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,superfamily_FYVE/PHD zinc finger,HMMPfam_AT_hook,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,PatternScan_ATPASE_ALPHA_BETA,superfamily_SET domain	-	no_errors
MUC16	94025	genome.wustl.edu	37	19	9005718	9005718	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	19	9005718	9005718	C	T	SNP	MUC16	NM_024690.2	human	genbank	58_37c	-1	validated	missense	c.39688	p.G13230R	0.016	HMMPfam_SEA,superfamily_SEA domain	HMMPfam_SEA,HMMSmart_SM00200,PatternScan_ATPASE_ALPHA_BETA,superfamily_SEA domain	-	no_errors
NLRP5	126206	genome.wustl.edu	37	19	56539284	56539284	+	Missense_Mutation	SNP	G	G	A	rs34175666	byCluster;by1000genomes	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	19	56539284	56539284	G	A	SNP	NLRP5	NM_153447.4	human	genbank	58_37c	+1	reviewed	missense	c.1685	p.R562H	0.000	NULL	HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH_like,superfamily_SSF52047,superfamily_SSF52540	-	no_errors
RNF217	154214	genome.wustl.edu	37	6	125397899	125397899	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	6	125397899	125397899	C	T	SNP	RNF217	NM_152553.2	human	genbank	58_37c	+1	provisional	nonsense	c.502	p.R168*	1.000	HMMSmart_SM00647,superfamily_RING/U-box	HMMPfam_IBR,HMMSmart_SM00647,superfamily_RING/U-box	-	no_errors
SACS	26278	genome.wustl.edu	37	13	23909753	23909753	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	13	23909753	23909753	C	A	SNP	SACS	NM_014363.4	human	genbank	58_37c	-1	reviewed	missense	c.8262	p.K2754N	0.021	NULL	HMMPfam_ubiquitin,superfamily_Chaperone J-domain,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_HEPN,HMMSmart_SM00748,superfamily_Ubiquitin-like,superfamily_Nucleotidyltransferase substrate binding subunit/domain	-	no_errors
SLC22A25	387601	genome.wustl.edu	37	11	62931501	62931501	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	11	62931501	62931501	C	T	SNP	SLC22A25	NM_199352.3	human	genbank	58_37c	-1	validated	missense	c.1439	p.G480E	0.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
VIL1	7429	genome.wustl.edu	37	2	219301940	219301940	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	2	219301940	219301940	C	A	SNP	VIL1	NM_007127.2	human	genbank	58_37c	+1	reviewed	missense	c.2065	p.R689S	1.000	HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753	HMMPfam_VHP,HMMSmart_VHP,superfamily_VHP,HMMSmart_GEL,HMMPfam_Gelsolin,superfamily_SSF55753,superfamily_SSF82754	-	no_errors
WDR3	10885	genome.wustl.edu	37	1	118491067	118491067	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	1	118491067	118491067	C	A	SNP	WDR3	NM_006784.2	human	genbank	58_37c	+1	reviewed	missense	c.1462	p.L488M	0.996	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	HMMSmart_SM00320,HMMPfam_Utp12,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ZNF229	7772	genome.wustl.edu	37	19	44933794	44933794	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-B6-A0X4-01A-11D-A10G-09	TCGA-B6-A0X4-10A-01D-A10G-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	edbe95af-e727-4d0f-a2a4-a3c9f2afa901	082a4db7-4d3f-4e2f-865f-f322b7b8da7a	19	44933794	44933794	G	A	SNP	ZNF229	NM_014518.2	human	genbank	58_37c	-1	validated	nonsense	c.1162	p.R388*	0.004	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
