Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
RERE	473	broad.mit.edu	37	1	8616534	8616534	+	Missense_Mutation	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:8616534C>G	uc001ape.2	-	7	1535	c.725G>C	c.(724-726)AGA>ACA	p.R242T	RERE_uc001apf.2_Missense_Mutation_p.R242T|RERE_uc001aph.1_Missense_Mutation_p.R242T	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	242	BAH.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		CAGTACTTACCTAAGGGCAGC	0.443													45	320					0	0	0	0
USP48	84196	broad.mit.edu	37	1	22016569	22016569	+	Silent	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:22016569A>G	uc001bfb.2	-	24	3145	c.2907T>C	c.(2905-2907)GCT>GCC	p.A969A	USP48_uc001bfa.2_Silent_p.A455A|USP48_uc010odq.1_Silent_p.A981A|USP48_uc009vqc.2_Silent_p.A903A|USP48_uc001bfc.2_Silent_p.A917A|USP48_uc001bfd.1_Silent_p.A94A	NM_032236	NP_115612	Q86UV5	UBP48_HUMAN	ubiquitin specific protease 48 isoform a	969	Ubiquitin-like.				ubiquitin-dependent protein catabolic process	mitochondrion|nucleus	cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)	2		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;4.66e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|OV - Ovarian serous cystadenocarcinoma(117;4.74e-26)|COAD - Colon adenocarcinoma(152;1.3e-05)|GBM - Glioblastoma multiforme(114;1.86e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000614)|STAD - Stomach adenocarcinoma(196;0.00644)|KIRC - Kidney renal clear cell carcinoma(1967;0.00711)|Lung(427;0.0327)|READ - Rectum adenocarcinoma(331;0.0657)|LUSC - Lung squamous cell carcinoma(448;0.0753)		GGTCAAAAGGAGCAACTGAAA	0.358													26	65					0	0	0	0
FABP3	2170	broad.mit.edu	37	1	31840248	31840248	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:31840248G>A	uc001bss.1	-	3	402	c.340C>T	c.(340-342)CTC>TTC	p.L114F		NM_004102	NP_004093	P05413	FABPH_HUMAN	fatty acid binding protein 3	114					negative regulation of cell proliferation					ovary(1)	1		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|all_neural(195;0.0629)|Breast(348;0.0707)|Medulloblastoma(700;0.123)		STAD - Stomach adenocarcinoma(196;0.0185)|READ - Rectum adenocarcinoma(331;0.149)		ACCAGGATGAGTTTTCCATCA	0.478													101	265					0	0	0	0
RRAGC	64121	broad.mit.edu	37	1	39322630	39322630	+	Missense_Mutation	SNP	A	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:39322630A>C	uc001ccq.2	-	2	384	c.362T>G	c.(361-363)ATG>AGG	p.M121R	RRAGC_uc010oim.1_Missense_Mutation_p.M87R|RRAGC_uc001ccr.2_Missense_Mutation_p.M43R	NM_022157	NP_071440	Q9HB90	RRAGC_HUMAN	Ras-related GTP binding C	121					apoptosis|cell growth|cellular protein localization|cellular response to amino acid stimulus|positive regulation of TOR signaling cascade|RNA splicing|small GTPase mediated signal transduction|transcription, DNA-dependent	lysosome|nucleus	GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein heterodimerization activity			ovary(1)	1	Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0393)				AAAAAAGTCCATTTGCCCAGG	0.398													62	177					0	0	0	0
TMEM53	79639	broad.mit.edu	37	1	45120269	45120270	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:45120269_45120270GG>TT	uc001cmc.2	-	3	831_832	c.795_796CC>AA	c.(793-798)AGCCTC>AGAATC	p.265_266SL>RI	TMEM53_uc001cmb.1_Intron|TMEM53_uc001cmd.2_Missense_Mutation_p.192_193SL>RI|TMEM53_uc009vxh.1_Missense_Mutation_p.148_149SL>RI|TMEM53_uc010ola.1_Missense_Mutation_p.148_149SL>RI	NM_024587	NP_078863	Q6P2H8	TMM53_HUMAN	transmembrane protein 53	265_266						integral to membrane				ovary(2)	2	Acute lymphoblastic leukemia(166;0.155)					TCGACACAGAGGCTTGTGTAGT	0.584													14	87					0	0	0	0
NASP	4678	broad.mit.edu	37	1	46073529	46073529	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:46073529G>T	uc001coi.1	+	6	1048	c.946G>T	c.(946-948)GAG>TAG	p.E316*	NASP_uc010olq.1_Nonsense_Mutation_p.E279*|NASP_uc001coh.1_Nonsense_Mutation_p.E318*|NASP_uc001coj.1_Intron|NASP_uc010olr.1_Nonsense_Mutation_p.E252*|NASP_uc001cok.1_Nonsense_Mutation_p.E199*	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	316	Glu-rich (acidic).				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					CGAGCCAGAGGAGAAGGTAGT	0.527													5	57					0.00116845	0.00124019	1	0
TGFBR3	7049	broad.mit.edu	37	1	92177865	92177866	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:92177865_92177866GC>AA	uc001doh.2	-	13	2566_2567	c.2100_2101GC>TT	c.(2098-2103)CTGCTC>CTTTTC	p.L701F	TGFBR3_uc009wde.2_Intron|TGFBR3_uc010osy.1_Missense_Mutation_p.L659F|TGFBR3_uc001doi.2_Missense_Mutation_p.L700F|TGFBR3_uc001doj.2_Missense_Mutation_p.L700F	NM_003243	NP_003234	Q03167	TGBR3_HUMAN	transforming growth factor, beta receptor III	701	ZP.|Extracellular (Potential).				BMP signaling pathway|cardiac epithelial to mesenchymal transition|cardiac muscle cell proliferation|cell growth|cell migration|definitive erythrocyte differentiation|heart trabecula formation|immune response|intracellular protein kinase cascade|liver development|negative regulation of cellular component movement|negative regulation of epithelial cell proliferation|palate development|pathway-restricted SMAD protein phosphorylation|response to follicle-stimulating hormone stimulus|response to luteinizing hormone stimulus|response to prostaglandin E stimulus|transforming growth factor beta receptor signaling pathway|ventricular cardiac muscle tissue morphogenesis	external side of plasma membrane|extracellular space|inhibin-betaglycan-ActRII complex|integral to plasma membrane|intracellular membrane-bounded organelle	coreceptor activity|heparin binding|PDZ domain binding|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity, type III|type II transforming growth factor beta receptor binding			ovary(3)	3		all_lung(203;0.00719)|Lung NSC(277;0.0268)		all cancers(265;0.0108)|Epithelial(280;0.0825)		TGTAGAAAGAGCAGTGAGGTGT	0.475													21	48					0	0	0	0
GPR61	83873	broad.mit.edu	37	1	110086823	110086823	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:110086823G>A	uc001dxy.2	+	2	1862	c.1179G>A	c.(1177-1179)GAG>GAA	p.E393E		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	393	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		GTCCTTCTGAGTCCTGGGTTT	0.602													22	49					0	0	0	0
C1orf103	55791	broad.mit.edu	37	1	111494644	111494644	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:111494644G>T	uc001eaa.2	-	2	1118	c.862C>A	c.(862-864)CCA>ACA	p.P288T	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	288					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		CATTTCACTGGAGCAGCTTGA	0.358													72	114					3.19358e-47	3.86423e-47	1	0
LOC100286793	100286793	broad.mit.edu	37	1	143744418	143744418	+	RNA	SNP	C	T	T	rs71661951		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:143744418C>T	uc001ejp.3	-	1		c.170G>A			LOC100286793_uc001ejr.3_RNA|LOC100286793_uc009whx.2_RNA|LOC100286793_uc009why.2_RNA					Homo sapiens cDNA FLJ39739 fis, clone SMINT2016440.												0						CAAGTGGTTTCGGAAGTGATC	0.403													3	12					0	0	0	0
RPRD2	23248	broad.mit.edu	37	1	150443141	150443141	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:150443141A>G	uc009wlr.2	+	11	1918	c.1717A>G	c.(1717-1719)ATA>GTA	p.I573V	RPRD2_uc010pcc.1_Missense_Mutation_p.I547V|RPRD2_uc001eup.3_Missense_Mutation_p.I547V	NM_015203	NP_056018	Q5VT52	RPRD2_HUMAN	Regulation of nuclear pre-mRNA domain containing	573	Ser-rich.						protein binding			ovary(1)	1						AGTCTCTACCATAAAGGGAAG	0.478													4	65					0	0	0	0
TMOD4	29765	broad.mit.edu	37	1	151146931	151146931	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:151146931C>T	uc001exc.3	-	3	406	c.216G>A	c.(214-216)TTG>TTA	p.L72L	TMOD4_uc001exb.2_5'Flank|TMOD4_uc001exd.2_RNA|TMOD4_uc010pct.1_Silent_p.L72L	NM_013353	NP_037485	Q9NZQ9	TMOD4_HUMAN	tropomodulin 4 (muscle)	72					muscle contraction	cytoplasm|cytoskeleton	actin binding|tropomyosin binding			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0486)|LUSC - Lung squamous cell carcinoma(543;0.211)			CCTGTTGCTCCAAGTACTGCA	0.552													73	288					0	0	0	0
ASH1L	55870	broad.mit.edu	37	1	155450127	155450127	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:155450127C>T	uc009wqq.2	-	3	3014	c.2534G>A	c.(2533-2535)AGG>AAG	p.R845K	ASH1L_uc001fkt.2_Missense_Mutation_p.R845K|ASH1L_uc009wqr.1_Missense_Mutation_p.R845K	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	845					cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TTTTAAAGTCCTTTTAGGTGG	0.393													8	269					0	0	0	0
GON4L	54856	broad.mit.edu	37	1	155744843	155744843	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:155744843C>T	uc001flz.2	-	17	2397	c.2300G>A	c.(2299-2301)AGC>AAC	p.S767N	GON4L_uc001fly.1_Missense_Mutation_p.S767N|GON4L_uc009wrh.1_Missense_Mutation_p.S767N|GON4L_uc001fma.1_Missense_Mutation_p.S767N|GON4L_uc001fmb.3_5'UTR|GON4L_uc001fmc.2_Missense_Mutation_p.S767N|GON4L_uc001fmd.3_Missense_Mutation_p.S767N|GON4L_uc009wri.2_Missense_Mutation_p.S353N|GON4L_uc009wrj.1_Missense_Mutation_p.S253N|GON4L_uc001fme.2_Missense_Mutation_p.S595N	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	767					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					GACATGTGTGCTGAAGTCTTC	0.478													47	18					0	0	0	0
HAPLN2	60484	broad.mit.edu	37	1	156594410	156594410	+	Missense_Mutation	SNP	G	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:156594410G>C	uc001fpn.1	+	6	981	c.574G>C	c.(574-576)GAC>CAC	p.D192H		NM_021817	NP_068589	Q9GZV7	HPLN2_HUMAN	brain link protein-1 precursor	192	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CGAGGGTCTGGACTGGTGTAA	0.726													4	34					0	0	0	0
POU2F1	5451	broad.mit.edu	37	1	167384851	167384851	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:167384851C>T	uc001gec.2	+	17	2198	c.2036C>T	c.(2035-2037)CCT>CTT	p.P679L	POU2F1_uc001ged.2_Missense_Mutation_p.P677L|POU2F1_uc001gee.2_Missense_Mutation_p.P679L|POU2F1_uc010plh.1_Missense_Mutation_p.P616L|POU2F1_uc001gef.2_Missense_Mutation_p.P691L|POU2F1_uc001geg.2_Intron	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	679					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|skin(2)|breast(1)	5						TTCCTGAACCCTCAGAACCTC	0.572													16	205					0	0	0	0
ZNF648	127665	broad.mit.edu	37	1	182026716	182026716	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:182026716G>A	uc001goz.2	-	2	638	c.430C>T	c.(430-432)CGA>TGA	p.R144*		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCAGGTAGTCGGTCCCCAAGA	0.577													68	45					0	0	0	0
CACNA1S	779	broad.mit.edu	37	1	201013550	201013550	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:201013550G>T	uc001gvv.2	-	39	4930	c.4703C>A	c.(4702-4704)CCC>CAC	p.P1568H		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1568	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	ACAGATCTCGGGGGCTGCCTC	0.597													5	117					8.12818e-05	8.90055e-05	1	0
LMOD1	25802	broad.mit.edu	37	1	201868533	201868533	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:201868533G>A	uc001gxb.2	-	2	1856	c.1608C>T	c.(1606-1608)CCC>CCT	p.P536P	LMOD1_uc010ppu.1_Silent_p.P485P	NM_012134	NP_036266	P29536	LMOD1_HUMAN	leiomodin 1 (smooth muscle)	536					muscle contraction	cytoskeleton|cytosol|membrane fraction	tropomyosin binding			ovary(1)|pancreas(1)|skin(1)	3						GAGGGGGAGGGGGTGGTGGGG	0.577													3	38					0	0	0	0
USH2A	7399	broad.mit.edu	37	1	216073542	216073542	+	Missense_Mutation	SNP	G	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:216073542G>C	uc001hku.1	-	40	7856	c.7469C>G	c.(7468-7470)TCT>TGT	p.S2490C		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2490	Extracellular (Potential).|Fibronectin type-III 11.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		TAACGATGCAGAAGGATTGGA	0.358										HNSCC(13;0.011)			3	101					0	0	0	0
ESRRG	2104	broad.mit.edu	37	1	216850602	216850602	+	Silent	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:216850602A>T	uc001hkw.1	-	2	454	c.288T>A	c.(286-288)CCT>CCA	p.P96P	ESRRG_uc001hky.1_Silent_p.P73P|ESRRG_uc009xdp.1_Silent_p.P73P|ESRRG_uc001hkz.1_Silent_p.P73P|ESRRG_uc010puc.1_Silent_p.P73P|ESRRG_uc001hla.1_Silent_p.P73P|ESRRG_uc001hlb.1_Silent_p.P73P|ESRRG_uc010pud.1_Intron|ESRRG_uc001hlc.1_Silent_p.P73P|ESRRG_uc001hld.1_Silent_p.P73P|ESRRG_uc001hkx.1_Silent_p.P101P|ESRRG_uc009xdo.1_Silent_p.P73P|ESRRG_uc001hle.1_Silent_p.P73P	NM_001438	NP_001429	P62508	ERR3_HUMAN	estrogen-related receptor gamma isoform 1	96					positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	AF-2 domain binding|retinoic acid receptor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(1)|kidney(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0358)|all cancers(67;0.0693)|GBM - Glioblastoma multiforme(131;0.0713)	Diethylstilbestrol(DB00255)	GTTTCCTGACAGGCCCACTAC	0.517													18	221					0	0	0	0
URB2	9816	broad.mit.edu	37	1	229772124	229772124	+	Silent	SNP	G	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:229772124G>C	uc001hts.1	+	4	1900	c.1764G>C	c.(1762-1764)CCG>CCC	p.P588P	URB2_uc009xfd.1_Silent_p.P588P	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	588						nucleolus				central_nervous_system(2)|ovary(1)	3						CCCTTCTCCCGGACACCCCAG	0.612													5	243					0	0	0	0
EXO1	9156	broad.mit.edu	37	1	242030178	242030178	+	Missense_Mutation	SNP	A	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:242030178A>C	uc001hzh.2	+	11	1628	c.1088A>C	c.(1087-1089)AAG>ACG	p.K363T	EXO1_uc001hzi.2_Missense_Mutation_p.K363T|EXO1_uc001hzj.2_Missense_Mutation_p.K363T|EXO1_uc009xgq.2_Missense_Mutation_p.K363T	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	363	Interaction with MSH3.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			ACATGTCAAAAGTCAGCTAAT	0.378								Direct_reversal_of_damage|Editing_and_processing_nucleases					9	168					0	0	0	0
CEP170	9859	broad.mit.edu	37	1	243354341	243354341	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:243354341C>A	uc001hzs.2	-	8	1495	c.1087G>T	c.(1087-1089)GTG>TTG	p.V363L	CEP170_uc001hzt.2_Missense_Mutation_p.V363L|CEP170_uc001hzu.2_Missense_Mutation_p.V363L	NM_014812	NP_055627	Q5SW79	CE170_HUMAN	centrosomal protein 170kDa isoform alpha	363						centriole|microtubule|spindle				ovary(1)|haematopoietic_and_lymphoid_tissue(1)	2	all_neural(11;0.101)	all_cancers(173;0.003)	all cancers(7;5.81e-06)|GBM - Glioblastoma multiforme(7;0.000443)|OV - Ovarian serous cystadenocarcinoma(106;0.0101)			TTCAAGTACACTGGAACATCA	0.363													3	23					0.00909568	0.00932693	1	0
OR6F1	343169	broad.mit.edu	37	1	247875881	247875881	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:247875881C>A	uc001idj.1	-	1	177	c.177G>T	c.(175-177)ATG>ATT	p.M59I		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			GAAAGAAGTACATGGGGGTAT	0.478													8	128					1.12685e-05	1.25667e-05	1	0
OR2M4	26245	broad.mit.edu	37	1	248402903	248402903	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr1:248402903G>A	uc010pzh.1	+	1	673	c.673G>A	c.(673-675)GTC>ATC	p.V225I		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CCTTCGAGCCGTCATCCACAT	0.473													7	70					0	0	0	0
NCOA4	8031	broad.mit.edu	37	10	51584772	51584772	+	Missense_Mutation	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:51584772C>G	uc001jis.3	+	8	1074	c.871C>G	c.(871-873)CAA>GAA	p.Q291E	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron|NCOA4_uc009xon.2_Missense_Mutation_p.Q307E|NCOA4_uc010qhd.1_Missense_Mutation_p.Q307E|NCOA4_uc010qhe.1_Missense_Mutation_p.Q191E|NCOA4_uc010qhf.1_Missense_Mutation_p.Q125E|NCOA4_uc001jit.2_Missense_Mutation_p.Q291E|NCOA4_uc009xoo.2_Missense_Mutation_p.Q291E	NM_001145263	NP_001138735	Q13772	NCOA4_HUMAN	nuclear receptor coactivator 4 isoform 3	291					androgen receptor signaling pathway|male gonad development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	androgen receptor binding|transcription coactivator activity			central_nervous_system(1)|kidney(1)	2						GGTTGGAGATCAAGAGCTTCC	0.438			T	RET	papillary thyroid 								4	162					0	0	0	0
PCDH15	65217	broad.mit.edu	37	10	56138621	56138621	+	Missense_Mutation	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:56138621T>C	uc001jju.1	-	4	634	c.239A>G	c.(238-240)AAT>AGT	p.N80S	PCDH15_uc010qhq.1_Missense_Mutation_p.N85S|PCDH15_uc010qhr.1_Missense_Mutation_p.N80S|PCDH15_uc010qhs.1_Missense_Mutation_p.N85S|PCDH15_uc010qht.1_Missense_Mutation_p.N80S|PCDH15_uc010qhu.1_Missense_Mutation_p.N80S|PCDH15_uc001jjv.1_Missense_Mutation_p.N58S|PCDH15_uc010qhv.1_Missense_Mutation_p.N80S|PCDH15_uc010qhw.1_Missense_Mutation_p.N80S|PCDH15_uc010qhx.1_Missense_Mutation_p.N80S|PCDH15_uc010qhy.1_Missense_Mutation_p.N85S|PCDH15_uc010qhz.1_Missense_Mutation_p.N80S|PCDH15_uc010qia.1_Missense_Mutation_p.N58S|PCDH15_uc010qib.1_Missense_Mutation_p.N58S|PCDH15_uc001jjw.2_Missense_Mutation_p.N80S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	80	Cadherin 1.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTAATCCACATTATCCTTTAA	0.423										HNSCC(58;0.16)			37	300					0	0	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72468481	72468481	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:72468481C>T	uc001jrh.2	+	4	817	c.817C>T	c.(817-819)CGC>TGC	p.R273C	ADAMTS14_uc001jrg.2_Missense_Mutation_p.R273C	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	273	Peptidase M12B.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						CTCGGTGGTTCGCTTCCATGG	0.617													8	125					0	0	0	0
CBARA1	10367	broad.mit.edu	37	10	74234940	74234940	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:74234940C>T	uc001jtb.1	-	9	990	c.857G>A	c.(856-858)GGA>GAA	p.G286E	CBARA1_uc010qjw.1_Missense_Mutation_p.G86E|CBARA1_uc010qjx.1_Missense_Mutation_p.G86E|CBARA1_uc009xqo.1_RNA	NM_006077	NP_006068	Q9BPX6	MICU1_HUMAN	calcium binding atopy-related autoantigen 1	284					calcium ion import|defense response|elevation of mitochondrial calcium ion concentration	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			ovary(1)	1						CAGATCAGCTCCAAAAAAGTA	0.478													11	18					0	0	0	0
HTR7	3363	broad.mit.edu	37	10	92509030	92509030	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:92509030G>A	uc001kha.2	-	2	1104	c.861C>T	c.(859-861)ATC>ATT	p.I287I	HTR7_uc001kgz.2_Silent_p.I287I|HTR7_uc001khb.2_Silent_p.I287I	NM_019859	NP_062873	P34969	5HT7R_HUMAN	5-hydroxytryptamine receptor 7 isoform d	287	Cytoplasmic (By similarity).				blood circulation|circadian rhythm	integral to plasma membrane	protein binding|serotonin receptor activity			ovary(1)	1					Eletriptan(DB00216)|Methysergide(DB00247)|Ziprasidone(DB00246)	CATTCAGGGCGATGACGCTGT	0.488													5	61					0	0	0	0
C10orf137	26098	broad.mit.edu	37	10	127436201	127436201	+	Missense_Mutation	SNP	T	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:127436201T>G	uc001liq.1	+	20	3204	c.2911T>G	c.(2911-2913)TAC>GAC	p.Y971D	C10orf137_uc001lin.2_Missense_Mutation_p.Y937D|C10orf137_uc001lio.1_Missense_Mutation_p.Y937D|C10orf137_uc001lip.1_Missense_Mutation_p.Y675D|C10orf137_uc001lis.1_Missense_Mutation_p.Y297D|C10orf137_uc001lit.1_5'Flank	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	971					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				GTCCACTACTTACTTTACTAT	0.403													60	102					0	0	0	0
GPR123	84435	broad.mit.edu	37	10	134942077	134942077	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:134942077G>A	uc001llx.3	+	7	1181	c.745G>A	c.(745-747)GAG>AAG	p.E249K	GPR123_uc001llw.2_Missense_Mutation_p.E968K	NM_001083909	NP_001077378	Q86SQ6	GP123_HUMAN	G protein-coupled receptor 123	249	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0		all_cancers(35;1.8e-10)|all_epithelial(44;8.95e-09)|Lung NSC(174;0.000845)|all_lung(145;0.00144)|all_neural(114;0.0299)|Colorectal(31;0.0585)|Melanoma(40;0.123)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;9.16e-06)|Epithelial(32;1.21e-05)|all cancers(32;1.63e-05)		GCTGCAGAACGAGCACTCATT	0.726													5	3					0	0	0	0
ECHS1	1892	broad.mit.edu	37	10	135182483	135182483	+	Missense_Mutation	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:135182483T>C	uc001lmu.2	-	4	529	c.458A>G	c.(457-459)TAT>TGT	p.Y153C		NM_004092	NP_004083	P30084	ECHM_HUMAN	mitochondrial short-chain enoyl-coenzyme A	153					fatty acid beta-oxidation	mitochondrial matrix	enoyl-CoA hydratase activity|protein binding				0		all_cancers(35;1.14e-09)|all_epithelial(44;5.79e-08)|Lung NSC(174;0.00263)|all_lung(145;0.0039)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.172)|Glioma(114;0.203)		all cancers(32;1.62e-06)|OV - Ovarian serous cystadenocarcinoma(35;5.75e-06)|Epithelial(32;7.58e-06)		CTCACCGGCATAGATGATATC	0.488													17	53					0	0	0	0
OR5P3	120066	broad.mit.edu	37	11	7847182	7847182	+	Missense_Mutation	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:7847182A>T	uc010rbg.1	-	1	338	c.338T>A	c.(337-339)TTC>TAC	p.F113Y		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGCCAGCAGGAAGCACTCGGC	0.552													10	184					0	0	0	0
PRMT3	10196	broad.mit.edu	37	11	20419170	20419170	+	Missense_Mutation	SNP	C	T	T	rs142076035		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:20419170C>T	uc001mqb.2	+	7	825	c.608C>T	c.(607-609)TCG>TTG	p.S203L	PRMT3_uc001mqc.2_Missense_Mutation_p.S126L|PRMT3_uc010rdn.1_Missense_Mutation_p.S141L	NM_005788	NP_005779	O60678	ANM3_HUMAN	protein arginine methyltransferase 3 isoform 1	203							zinc ion binding				0						AGAACCTGCTCGTCATCTACT	0.413													87	114					0	0	0	0
NUP160	23279	broad.mit.edu	37	11	47857319	47857319	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:47857319G>A	uc001ngm.2	-	7	1070	c.985C>T	c.(985-987)CCT>TCT	p.P329S	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	329					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						TTCTTCACAGGGACATACTCC	0.453													18	178					0	0	0	0
OR5L2	26338	broad.mit.edu	37	11	55595192	55595192	+	Silent	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:55595192C>A	uc001nhy.1	+	1	498	c.498C>A	c.(496-498)ATC>ATA	p.I166I		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				CTCTTAGGATCCTCTTCTATA	0.478										HNSCC(27;0.073)			13	431					0.00185496	0.00196026	1	0
CYBASC3	220002	broad.mit.edu	37	11	61120500	61120500	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:61120500C>T	uc001nrf.3	-	3	681	c.505G>A	c.(505-507)GCA>ACA	p.A169T	CYBASC3_uc010rlh.1_Missense_Mutation_p.A186T|CYBASC3_uc001nrg.2_Missense_Mutation_p.A169T|CYBASC3_uc009ynn.2_RNA|CYBASC3_uc001nrh.2_Missense_Mutation_p.A169T|CYBASC3_uc001nri.2_RNA	NM_001161452	NP_001154924	Q8NBI2	CYAC3_HUMAN	cytochrome b, ascorbate dependent 3 isoform 2	169	Helical; Name=5; (Potential).|Cytochrome b561.				electron transport chain|transport	integral to membrane|late endosome membrane|lysosomal membrane	metal ion binding|oxidoreductase activity				0						ATGACGGATGCGATGGACAGA	0.522													16	50					0	0	0	0
UBXN1	51035	broad.mit.edu	37	11	62445536	62445536	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:62445536C>T	uc001nul.1	-	5	477	c.345G>A	c.(343-345)CGG>CGA	p.R115R	UBXN1_uc001nuj.2_Silent_p.R115R|UBXN1_uc001num.1_Silent_p.R115R|UBXN1_uc001nuk.2_Silent_p.R80R|UBXN1_uc010rme.1_Silent_p.R115R|UBXN1_uc010rmf.1_3'UTR	NM_015853	NP_056937	Q04323	UBXN1_HUMAN	UBX domain protein 1	115	Potential.|Interaction with BRCA1.				negative regulation of proteasomal ubiquitin-dependent protein catabolic process|negative regulation of protein ubiquitination|proteasomal ubiquitin-dependent protein catabolic process	cytoplasm	ATPase binding|K6-linked polyubiquitin binding				0						CCAATGCCTCCCGTTCCTCTC	0.587													5	124					0	0	0	0
ZBTB3	79842	broad.mit.edu	37	11	62520234	62520234	+	Silent	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:62520234C>G	uc001nuz.2	-	2	1175	c.1053G>C	c.(1051-1053)CTG>CTC	p.L351L		NM_024784	NP_079060	Q9H5J0	ZBTB3_HUMAN	zinc finger and BTB domain containing 3	351					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3						TCACCTGGACCAGCTCAGCTT	0.313													5	138					0	0	0	0
MALAT1	378938	broad.mit.edu	37	11	65271029	65271029	+	RNA	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:65271029A>G	uc010roh.1	+	1		c.5797A>G			uc001ody.2_RNA|MALAT1_uc001odz.2_RNA	NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						TAAAATTTACATGTTGTGATG	0.289													40	150					0	0	0	0
CCND1	595	broad.mit.edu	37	11	69462871	69462871	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:69462871C>T	uc001opa.2	+	4	893	c.684C>T	c.(682-684)CGC>CGT	p.R228R		NM_053056	NP_444284	P24385	CCND1_HUMAN	cyclin D1	228					cell division|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|mitotic cell cycle G1/S transition DNA damage checkpoint|positive regulation of cyclin-dependent protein kinase activity|positive regulation of protein phosphorylation|response to drug|response to UV-A|S phase of mitotic cell cycle	cyclin-dependent protein kinase holoenzyme complex|cytosol|membrane|nucleoplasm	protein kinase binding			ovary(1)|lung(1)	2	all_cancers(3;2.01e-114)|all_epithelial(3;3.59e-122)|Breast(3;5.4e-34)|all_lung(4;1.99e-21)|Lung NSC(4;4.65e-21)|Hepatocellular(3;8.22e-16)|Melanoma(5;1.89e-05)|Ovarian(3;0.0348)		Epithelial(3;7.2e-57)|all cancers(3;7.75e-51)|BRCA - Breast invasive adenocarcinoma(2;4.9e-48)|Lung(3;1.13e-16)|LUSC - Lung squamous cell carcinoma(11;3.74e-15)|STAD - Stomach adenocarcinoma(18;0.0278)|LUAD - Lung adenocarcinoma(13;0.0537)		Arsenic trioxide(DB01169)	CCTACTACCGCCTCACACGCT	0.612			T	IGH@|FSTL3	CLL|B-ALL|breast					Multiple Myeloma(6;0.086)			13	516					0	0	0	0
FAT3	120114	broad.mit.edu	37	11	92088408	92088408	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:92088408C>A	uc001pdj.3	+	1	3147	c.3130C>A	c.(3130-3132)CCA>ACA	p.P1044T		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1044	Cadherin 10.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCCCTATTTCCCAGACTTTGC	0.507										TCGA Ovarian(4;0.039)			4	59					0.00909568	0.00932693	1	0
ZNF259	8882	broad.mit.edu	37	11	116653688	116653688	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:116653688G>A	uc001ppp.2	-	11	1072	c.1039C>T	c.(1039-1041)CTC>TTC	p.L347F	ZNF259_uc009yzd.2_Missense_Mutation_p.L347F|ZNF259_uc001ppq.2_Missense_Mutation_p.L277F	NM_003904	NP_003895	O75312	ZPR1_HUMAN	zinc finger protein 259	347					cell proliferation|signal transduction	cytoplasm|nucleolus					0	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.61e-06)|all cancers(92;0.000139)|OV - Ovarian serous cystadenocarcinoma(223;0.153)		TTGCCCCCGAGGACTGCCATT	0.478													118	43					0	0	0	0
TAS2R19	259294	broad.mit.edu	37	12	11174543	11174543	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:11174543G>A	uc010shj.1	-	1	628	c.628C>T	c.(628-630)CGG>TGG	p.R210W	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176888	NP_795369	P59542	T2R19_HUMAN	taste receptor, type 2, member 19	210	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			skin(1)	1						CTATGGAGCCGCATCTTCTTG	0.403													7	250					0	0	0	0
ABCC9	10060	broad.mit.edu	37	12	22063175	22063175	+	Missense_Mutation	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:22063175C>G	uc001rfi.1	-	8	1256	c.1236G>C	c.(1234-1236)CAG>CAC	p.Q412H	ABCC9_uc001rfh.2_Missense_Mutation_p.Q412H|ABCC9_uc001rfj.1_Missense_Mutation_p.Q412H	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	412	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	AGTTGTTGATCTGCCCCAGAG	0.378													7	176					0	0	0	0
FGD4	121512	broad.mit.edu	37	12	32777925	32777925	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:32777925A>G	uc001rkz.2	+	13	2035	c.1558A>G	c.(1558-1560)ATC>GTC	p.I520V	FGD4_uc001rlc.2_Missense_Mutation_p.I605V|FGD4_uc001rky.2_Missense_Mutation_p.I272V|FGD4_uc001rla.2_Missense_Mutation_p.I176V|FGD4_uc010ske.1_Missense_Mutation_p.I632V|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	520	PH 1.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					TCAAGAAACCATCGATGCTTT	0.308													117	121					0	0	0	0
ABCD2	225	broad.mit.edu	37	12	39947881	39947881	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:39947881C>A	uc001rmb.2	-	10	2482	c.2056G>T	c.(2056-2058)GAA>TAA	p.E686*		NM_005164	NP_005155	Q9UBJ2	ABCD2_HUMAN	ATP-binding cassette, sub-family D, member 2	686	ABC transporter.				fatty acid metabolic process|transport	ATP-binding cassette (ABC) transporter complex|integral to plasma membrane|peroxisomal membrane	ATP binding|ATPase activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)|skin(1)	6						TCCAATTGTTCAAAGCGCCAA	0.348													7	119					1.26484e-09	1.45758e-09	1	0
ADAMTS20	80070	broad.mit.edu	37	12	43824171	43824171	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:43824171C>T	uc010skx.1	-	23	3365	c.3365G>A	c.(3364-3366)CGC>CAC	p.R1122H	ADAMTS20_uc001rno.1_Missense_Mutation_p.R276H|ADAMTS20_uc001rnp.1_Missense_Mutation_p.R276H	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1122	TSP type-1 6.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		GTCACTGGGGCGACTAGCTTC	0.368													5	37					0	0	0	0
MLL2	8085	broad.mit.edu	37	12	49425941	49425942	+	Nonsense_Mutation	DNP	GC	AA	AA			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:49425941_49425942GC>AA	uc001rta.3	-	39	12546_12547	c.12546_12547GC>TT	c.(12544-12549)GGGCAG>GGTTAG	p.Q4183*		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4183	Gln-rich.				chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						GGCAGACCCTGCCCAGACTGGA	0.594			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			6	127					0	0	0	0
SLC11A2	4891	broad.mit.edu	37	12	51404506	51404506	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:51404506C>T	uc001rxe.3	-	2	103	c.6G>A	c.(4-6)GTG>GTA	p.V2V	SLC11A2_uc001rxd.3_5'UTR|SLC11A2_uc001rxc.3_Silent_p.V2V|SLC11A2_uc001rxf.2_RNA|SLC11A2_uc010smx.1_5'Flank|SLC11A2_uc001rxh.1_Silent_p.V2V|SLC11A2_uc001rxj.1_Silent_p.V2V|SLC11A2_uc001rxi.2_Silent_p.V2V|SLC11A2_uc001rxk.1_Silent_p.V31V|SLC11A2_uc010smy.1_5'UTR	NM_000617	NP_000608	P49281	NRAM2_HUMAN	solute carrier family 11 (proton-coupled	2	Cytoplasmic (Potential).				activation of caspase activity|cellular iron ion homeostasis|cellular response to oxidative stress|detection of oxygen|ferrous iron import|multicellular organismal iron ion homeostasis|response to hypoxia|response to iron ion	apical plasma membrane|basal part of cell|cell surface|cytoplasmic vesicle|early endosome|late endosome|late endosome membrane|lysosomal membrane|lysosome|nucleus|paraferritin complex|perinuclear region of cytoplasm|perinuclear region of cytoplasm|plasma membrane|recycling endosome|trans-Golgi network	cadmium ion transmembrane transporter activity|cadmium ion transmembrane transporter activity|cobalt ion transmembrane transporter activity|copper ion transmembrane transporter activity|ferrous iron transmembrane transporter activity|ferrous iron transmembrane transporter activity|lead ion transmembrane transporter activity|lead ion transmembrane transporter activity|manganese ion transmembrane transporter activity|manganese ion transmembrane transporter activity|nickel ion transmembrane transporter activity|protein binding|solute:hydrogen symporter activity|vanadium ion transmembrane transporter activity|zinc ion transmembrane transporter activity			large_intestine(1)	1						CAGGACCCAGCACCATGGTGG	0.363													10	53					0	0	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54932700	54932700	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:54932700G>A	uc001sgc.3	+	30	3295	c.3216G>A	c.(3214-3216)CAG>CAA	p.Q1072Q	NCKAP1L_uc010sox.1_Silent_p.Q614Q|NCKAP1L_uc010soy.1_Silent_p.Q1022Q	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1072					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						AGCTGGGCCAGGAGACTGACA	0.448													3	87					0	0	0	0
SMARCC2	6601	broad.mit.edu	37	12	56566447	56566447	+	Silent	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:56566447T>C	uc001skb.2	-	18	1798	c.1692A>G	c.(1690-1692)AAA>AAG	p.K564K	SMARCC2_uc001skd.2_Silent_p.K595K|SMARCC2_uc001ska.2_Silent_p.K595K|SMARCC2_uc001skc.2_Silent_p.K594K|SMARCC2_uc010sqf.1_Silent_p.K484K	NM_003075	NP_003066	Q8TAQ2	SMRC2_HUMAN	SWI/SNF-related matrix-associated	564					chromatin remodeling|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleoplasm|SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			lung(2)|central_nervous_system(2)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(18;0.123)			TCTCTTTGCCTTTGTCAGGAA	0.502													61	148					0	0	0	0
MDM2	4193	broad.mit.edu	37	12	69233471	69233471	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:69233471A>G	uc001sui.2	+	11	1623	c.1336A>G	c.(1336-1338)ATT>GTT	p.I446V	MDM2_uc009zri.2_Missense_Mutation_p.I401V|MDM2_uc009zqx.2_Missense_Mutation_p.I391V|MDM2_uc009zqw.2_Nonstop_Mutation_p.*173W|MDM2_uc001suk.2_Intron|MDM2_uc001sun.3_Missense_Mutation_p.I265V|MDM2_uc009zqz.2_Missense_Mutation_p.I393V|MDM2_uc009zra.2_Missense_Mutation_p.I244V|MDM2_uc001sum.1_Missense_Mutation_p.I74V|MDM2_uc009zrd.2_Missense_Mutation_p.I130V|MDM2_uc009zrc.2_Missense_Mutation_p.I130V|MDM2_uc009zre.2_Missense_Mutation_p.I187V|MDM2_uc009zrf.2_Missense_Mutation_p.I130V|MDM2_uc001suo.2_Missense_Mutation_p.I240V|MDM2_uc009zrg.2_Missense_Mutation_p.I162V|MDM2_uc009zrh.2_Missense_Mutation_p.I214V	NM_002392	NP_002383	Q00987	MDM2_HUMAN	mouse double minute 2 homolog isoform MDM2	440	Necessary for interaction with USP2.|RING-type.				cellular response to hypoxia|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|establishment of protein localization|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell cycle arrest|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mitotic cell cycle|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein complex assembly|protein destabilization|protein localization to nucleus|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to antibiotic|synaptic transmission	cytosol|endocytic vesicle membrane|insoluble fraction|nucleolus|nucleoplasm|plasma membrane|protein complex	enzyme binding|identical protein binding|p53 binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|central_nervous_system(1)	3	all_cancers(1;8.46e-121)|all_epithelial(5;3.21e-36)|Lung NSC(4;2.16e-33)|all_lung(4;3.03e-31)|Glioma(1;1.9e-09)|Breast(13;1.59e-06)|all_neural(1;1.03e-05)|Melanoma(1;0.0171)|Renal(347;0.0684)		all cancers(2;8.67e-65)|GBM - Glioblastoma multiforme(2;8.89e-62)|BRCA - Breast invasive adenocarcinoma(5;2.43e-08)|Lung(24;1.5e-05)|LUAD - Lung adenocarcinoma(15;8.5e-05)|STAD - Stomach adenocarcinoma(21;0.00372)|Kidney(9;0.143)			ACCTTGTGTGATTTGTCAAGG	0.408			A		sarcoma|glioma|colorectal|other								9	114					0	0	0	0
NDUFA12	55967	broad.mit.edu	37	12	95365236	95365236	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:95365236G>A	uc001tdl.2	-	4	473	c.418C>T	c.(418-420)CCT>TCT	p.P140S		NM_018838	NP_061326	Q9UI09	NDUAC_HUMAN	13kDa differentiation-associated protein	140					respiratory electron transport chain|respiratory gaseous exchange|response to oxidative stress|transport	mitochondrial respiratory chain complex I	electron carrier activity|NADH dehydrogenase (ubiquinone) activity				0					NADH(DB00157)	GGTGTTGAAGGTGGGATCCAC	0.358													15	148					0	0	0	0
VEZT	55591	broad.mit.edu	37	12	95645720	95645720	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:95645720C>T	uc001tdz.2	+	2	146	c.41C>T	c.(40-42)TCT>TTT	p.S14F	VEZT_uc009zsy.1_5'UTR|VEZT_uc001tdr.2_5'UTR|VEZT_uc001tds.2_5'UTR|VEZT_uc001tdt.2_5'UTR|VEZT_uc009zsz.1_Missense_Mutation_p.S14F|VEZT_uc001tdv.2_5'UTR|VEZT_uc001tdw.1_5'UTR|VEZT_uc009zta.1_5'UTR	NM_017599	NP_060069	Q9HBM0	VEZA_HUMAN	vezatin, adherens junctions transmembrane	14						acrosomal vesicle|adherens junction|integral to membrane|nucleus				ovary(1)	1						TTTCAGAATTCTCCACTTTAC	0.363													9	97					0	0	0	0
RBM19	9904	broad.mit.edu	37	12	114358415	114358415	+	Splice_Site	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:114358415C>A	uc009zwi.2	-	19	2529	c.2385_splice	c.e19+1	p.Q795_splice	RBM19_uc001tvn.3_Splice_Site_p.Q795_splice|RBM19_uc001tvm.2_Splice_Site_p.Q795_splice	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19						multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					cTTCACTTTACCTGGAGCTGC	0.279													23	422					0.00047179	0.000509701	1	0
RBM19	9904	broad.mit.edu	37	12	114404022	114404022	+	Missense_Mutation	SNP	A	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:114404022A>C	uc009zwi.2	-	1	155	c.11T>G	c.(10-12)CTG>CGG	p.L4R	RBM19_uc001tvn.3_Missense_Mutation_p.L4R|RBM19_uc001tvm.2_Missense_Mutation_p.L4R	NM_001146699	NP_001140171	Q9Y4C8	RBM19_HUMAN	RNA binding motif protein 19	4	RRM 1.				multicellular organismal development|positive regulation of embryonic development	chromosome|cytoplasm|nucleolus|nucleoplasm	nucleotide binding|RNA binding			skin(3)|ovary(1)|liver(1)|central_nervous_system(1)	6	Medulloblastoma(191;0.163)|all_neural(191;0.178)					CTTCACGATCAGTCGCGACAT	0.582											OREG0022146	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	93					0	0	0	0
DNAH10	196385	broad.mit.edu	37	12	124297944	124297944	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:124297944G>A	uc001uft.3	+	19	3049	c.3024G>A	c.(3022-3024)ATG>ATA	p.M1008I	DNAH10_uc010tav.1_Missense_Mutation_p.M550I|DNAH10_uc010taw.1_Missense_Mutation_p.M493I	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1008	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CTATTGTGATGGAGAAATTTG	0.403													10	197					0	0	0	0
LOC284232	284232	broad.mit.edu	37	13	19414170	19414170	+	RNA	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:19414170T>C	uc010tcj.1	-	1		c.31940A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GATTGAACAGTTGGTTCAAGT	0.269													4	32					0	0	0	0
C1QTNF9B	387911	broad.mit.edu	37	13	24470966	24470966	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:24470966C>T	uc010tcw.1	-	1	160	c.160G>A	c.(160-162)GAT>AAT	p.D54N	C1QTNF9B_uc010tcv.1_Silent_p.A17A|C1QTNF9B_uc001uoz.1_Missense_Mutation_p.D54N|C1QTNF9B_uc010tcx.1_Missense_Mutation_p.D54N	NM_001007537	NP_001007538	B2RNN3	C1T9B_HUMAN	C1q and tumor necrosis factor related protein 9B	54	Collagen-like 1.					collagen					0						GTACCTGCATCGCCTTTGTCA	0.512													6	132					0	0	0	0
FLT3	2322	broad.mit.edu	37	13	28599056	28599056	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:28599056C>T	uc001urw.2	-	18	2314	c.2232G>A	c.(2230-2232)CAG>CAA	p.Q744Q	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Silent_p.Q744Q	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	744	Protein kinase.|Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	CCGGGTGTATCTGAACTTCTC	0.308			Mis|O		AML|ALL								143	112					0	0	0	0
PAN3	255967	broad.mit.edu	37	13	28854571	28854571	+	Silent	SNP	A	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:28854571A>C	uc001urz.2	+	15	1782	c.1774A>C	c.(1774-1776)AGG>CGG	p.R592R	PAN3_uc001ury.2_Silent_p.R426R|PAN3_uc001urx.2_Silent_p.R538R	NM_175854	NP_787050	Q58A45	PAN3_HUMAN	PABP1-dependent poly A-specific ribonuclease	738	Protein kinase.|Interaction with PAN2.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening	centrosome|cytosol	ATP binding|protein kinase activity			ovary(1)	1	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)	Colorectal(13;0.000334)	all cancers(112;0.0102)|Epithelial(112;0.0803)|GBM - Glioblastoma multiforme(144;0.121)|OV - Ovarian serous cystadenocarcinoma(117;0.13)|Lung(94;0.174)		TGACCAAAACAGGATGCGAAG	0.373													94	85					0	0	0	0
RCBTB2	1102	broad.mit.edu	37	13	49086282	49086282	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:49086282C>A	uc001vch.2	-	8	916	c.545G>T	c.(544-546)GGG>GTG	p.G182V	RCBTB2_uc010tgg.1_Missense_Mutation_p.G187V|RCBTB2_uc001vci.2_Missense_Mutation_p.G158V|RCBTB2_uc010tgh.1_Intron|RCBTB2_uc001vcj.2_Missense_Mutation_p.G186V|RCBTB2_uc010acv.1_RNA|RCBTB2_uc010tgi.1_Missense_Mutation_p.G158V	NM_001268	NP_001259	O95199	RCBT2_HUMAN	regulator of chromosome condensation and BTB	182	RCC1 3.						Ran guanyl-nucleotide exchange factor activity			ovary(2)|lung(2)|skin(1)	5		all_cancers(8;4.86e-71)|all_epithelial(8;2.11e-22)|Acute lymphoblastic leukemia(8;1.1e-21)|all_hematologic(8;2.3e-21)|all_lung(13;2.3e-10)|Lung NSC(96;1.07e-07)|Breast(56;1.53e-05)|Prostate(109;0.00174)|Hepatocellular(98;0.00826)|Myeloproliferative disorder(33;0.0179)|all_neural(104;0.0227)|Glioma(44;0.0286)|Lung SC(185;0.0301)		GBM - Glioblastoma multiforme(99;1.8e-09)|LUSC - Lung squamous cell carcinoma(3;0.116)		TCCTACCTGCCCAGAGTTATT	0.408													11	232					1.58986e-06	1.78952e-06	1	0
PIBF1	10464	broad.mit.edu	37	13	73467981	73467981	+	Missense_Mutation	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:73467981A>T	uc001vjc.2	+	11	1687	c.1382A>T	c.(1381-1383)AAA>ATA	p.K461I	PIBF1_uc010aeo.1_RNA|PIBF1_uc001vjb.2_Missense_Mutation_p.K461I|PIBF1_uc010aep.2_Intron	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	461						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		CATCAAAGTAAATTAAAATCT	0.343													32	81					0	0	0	0
RBM26	64062	broad.mit.edu	37	13	79911341	79911341	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:79911341C>A	uc001vkz.2	-	19	2649	c.2635G>T	c.(2635-2637)GGG>TGG	p.G879W	RBM26_uc001vky.2_Missense_Mutation_p.G850W|RBM26_uc001vla.2_Missense_Mutation_p.G853W|RBM26_uc010tia.1_Missense_Mutation_p.G234W|RBM26_uc001vkx.2_Missense_Mutation_p.G589W	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	877					mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		ACACCTCGCCCTCGCCCTCGC	0.557													7	107					8.12818e-05	8.90055e-05	1	0
SLITRK5	26050	broad.mit.edu	37	13	88327784	88327784	+	Silent	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:88327784C>A	uc001vln.2	+	2	360	c.141C>A	c.(139-141)ATC>ATA	p.I47I	SLITRK5_uc010tic.1_Intron	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	47	Extracellular (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					ATGGGGAAATCTGTGACAATG	0.458													98	124					2.5264e-35	3.04174e-35	1	0
FARP1	10160	broad.mit.edu	37	13	99042216	99042216	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:99042216G>A	uc001vnj.2	+	10	1197	c.861G>A	c.(859-861)GCG>GCA	p.A287A	FARP1_uc001vnh.2_Silent_p.A287A	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	287	FERM.				regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			TTTAGAGTGCGTACCAGGATA	0.418													29	272					0	0	0	0
MYO16	23026	broad.mit.edu	37	13	109817248	109817248	+	Splice_Site	SNP	G	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:109817248G>C	uc001vqt.1	+	33	5225	c.5099_splice	c.e33-1	p.G1700_splice	MYO16_uc010agk.1_Splice_Site_p.G1722_splice	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8						cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			ATTTATTTTAGGTTTTGAAAC	0.284													25	55					0	0	0	0
CUL4A	8451	broad.mit.edu	37	13	113914958	113914958	+	Missense_Mutation	SNP	A	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:113914958A>C	uc010tjy.1	+	20	2080	c.2069A>C	c.(2068-2070)CAG>CCG	p.Q690P	CUL4A_uc010tjx.1_Missense_Mutation_p.Q590P|CUL4A_uc010agu.2_Missense_Mutation_p.Q551P|CUL4A_uc010tjz.1_Missense_Mutation_p.Q369P	NM_001008895	NP_001008895	Q13619	CUL4A_HUMAN	cullin 4A isoform 1	690					cell cycle arrest|DNA repair|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|ubiquitin-dependent protein catabolic process	Cul4A-RING ubiquitin ligase complex	ubiquitin protein ligase binding			central_nervous_system(2)|skin(1)	3	Lung NSC(43;0.0161)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0482)|all_epithelial(44;0.0148)|all_lung(25;0.0271)|Lung NSC(25;0.0977)|Breast(118;0.188)	all cancers(43;0.112)			AGAGTGTTTCAGGATAGACAA	0.299													3	70					0	0	0	0
GAS6	2621	broad.mit.edu	37	13	114535695	114535695	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:114535695C>T	uc001vud.2	-	9	1018	c.865G>A	c.(865-867)GCC>ACC	p.A289T	GAS6_uc001vug.2_5'UTR|GAS6_uc001vuf.2_Missense_Mutation_p.A16T	NM_000820	NP_000811	Q14393	GAS6_HUMAN	growth arrest-specific 6 isoform 1 precursor	332					cell proliferation|leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|post-translational protein modification|proteolysis|regulation of growth	endoplasmic reticulum lumen|extracellular space|Golgi lumen|platelet alpha granule lumen	calcium ion binding|receptor agonist activity			central_nervous_system(4)	4	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0176)|all_epithelial(44;0.0104)|all_lung(25;0.0249)|Lung NSC(25;0.0908)|Breast(118;0.188)				ACACTCTTGGCCACGCTGAAG	0.667													8	160					0	0	0	0
KHNYN	23351	broad.mit.edu	37	14	24900024	24900024	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr14:24900024C>T	uc001wph.3	+	2	290	c.88C>T	c.(88-90)CAT>TAT	p.H30Y	KHNYN_uc010tpc.1_Missense_Mutation_p.H71Y|KHNYN_uc010alw.2_Missense_Mutation_p.H30Y|CBLN3_uc001wpg.3_5'Flank	NM_015299	NP_056114	O15037	KHNYN_HUMAN	hypothetical protein LOC23351	30										ovary(2)|liver(1)	3						ACAGCAGCCCCATGTGGAGCG	0.667													9	15					0	0	0	0
WDR89	112840	broad.mit.edu	37	14	64066011	64066011	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr14:64066011G>A	uc001xgh.2	-	3	896	c.650C>T	c.(649-651)TCA>TTA	p.S217L	WDR89_uc001xgi.2_Missense_Mutation_p.S217L	NM_001008726	NP_001008726	Q96FK6	WDR89_HUMAN	WD repeat domain 89	217	WD 5.										0				OV - Ovarian serous cystadenocarcinoma(108;0.00543)|all cancers(60;0.0181)|BRCA - Breast invasive adenocarcinoma(234;0.101)		GCTTACTGATGAAATTGAGTT	0.373													53	274					0	0	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70712774	70712774	+	Missense_Mutation	SNP	G	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr14:70712774G>C	uc010ttg.1	-	1	1745	c.1094C>G	c.(1093-1095)TCT>TGT	p.S365C		NR_003951				SubName: Full=ADAM21-like protein;												0						GTTTCCCTGAGAGTTGATTTC	0.383													124	328					0	0	0	0
TMEM63C	57156	broad.mit.edu	37	14	77703058	77703058	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr14:77703058C>T	uc001xtf.2	+	9	846	c.634C>T	c.(634-636)CCC>TCC	p.P212S	TMEM63C_uc010asq.1_Missense_Mutation_p.P212S	NM_020431	NP_065164	Q9P1W3	TM63C_HUMAN	transmembrane protein 63C	212						integral to membrane					0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0342)		GGGGTTTGCACCCAGGAATAG	0.547													6	145					0	0	0	0
SNW1	22938	broad.mit.edu	37	14	78189539	78189539	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr14:78189539G>T	uc001xuf.2	-	11	1142	c.1115C>A	c.(1114-1116)GCA>GAA	p.A372E	SNW1_uc010tvm.1_Missense_Mutation_p.A297E|SNW1_uc010asu.2_Missense_Mutation_p.A210E|SNW1_uc010tvn.1_Missense_Mutation_p.A372E	NM_012245	NP_036377	Q13573	SNW1_HUMAN	SKI-interacting protein	372					negative regulation of transcription, DNA-dependent|nuclear mRNA splicing, via spliceosome|regulation of transcription from RNA polymerase II promoter	catalytic step 2 spliceosome|nucleoplasm	Notch binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		ATCAGGAGCTGCCCTGGAAAG	0.358													35	182					7.63505e-26	9.14694e-26	1	0
BRF1	2972	broad.mit.edu	37	14	105686450	105686450	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr14:105686450C>T	uc001yqp.2	-	12	1696	c.1333G>A	c.(1333-1335)GGT>AGT	p.G445S	BRF1_uc010tyo.1_Missense_Mutation_p.G330S|BRF1_uc010typ.1_Missense_Mutation_p.G330S|BRF1_uc001yqk.2_5'UTR|BRF1_uc001yql.2_Missense_Mutation_p.G241S|BRF1_uc001yqo.2_Missense_Mutation_p.G207S|BRF1_uc010axg.1_Missense_Mutation_p.G418S|BRF1_uc001yqn.2_Intron|BRF1_uc010axh.1_Intron|BRF1_uc010axi.1_5'UTR	NM_001519	NP_001510	Q92994	TF3B_HUMAN	transcription initiation factor IIIB isoform 1	445					positive regulation of transcription, DNA-dependent|rRNA transcription|transcription initiation from RNA polymerase III promoter|tRNA transcription	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		TCCAGCTCACCGTCTCCTGAA	0.627													8	120					0	0	0	0
GABRG3	2567	broad.mit.edu	37	15	27772605	27772605	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr15:27772605A>G	uc001zbg.1	+	8	1058	c.892A>G	c.(892-894)ACC>GCC	p.T298A		NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	298	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		GACCATGACCACCCTGAGCAC	0.582													11	86					0	0	0	0
GLDN	342035	broad.mit.edu	37	15	51696666	51696666	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr15:51696666C>T	uc002aba.2	+	10	1540	c.1371C>T	c.(1369-1371)TTC>TTT	p.F457F	GLDN_uc002abb.2_Silent_p.F333F	NM_181789	NP_861454	Q6ZMI3	GLDN_HUMAN	gliomedin	457	Extracellular (Potential).|Olfactomedin-like.				cell differentiation|nervous system development	collagen|integral to membrane|plasma membrane				ovary(2)	2				all cancers(107;0.00194)|GBM - Glioblastoma multiforme(94;0.00942)		AGAGGACATTCTCAGTGGTGC	0.473													13	158					0	0	0	0
GCOM1	145781	broad.mit.edu	37	15	57925871	57925871	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr15:57925871G>T	uc002aei.2	+	8	984	c.865G>T	c.(865-867)GAG>TAG	p.E289*	GCOM1_uc002aej.2_Nonsense_Mutation_p.E289*|GCOM1_uc002aek.2_RNA|GCOM1_uc002ael.2_RNA|GCOM1_uc002aem.2_Nonsense_Mutation_p.E289*|GCOM1_uc002aeq.2_RNA|GCOM1_uc002aen.2_RNA|GCOM1_uc010bfy.2_RNA|GCOM1_uc002aeo.2_Nonsense_Mutation_p.E289*|GCOM1_uc002aep.2_RNA|GCOM1_uc010bfx.2_RNA	NM_001018100	NP_001018110	P0CAP1	GCOM1_HUMAN	GRINL1A upstream protein isoform 7	289	Potential.				intracellular signal transduction	extrinsic to internal side of plasma membrane|I band				ovary(1)	1						GCAAGCAGCAGAGATCAGCCT	0.473													5	139					0.000157383	0.000170793	1	0
ADAMTSL3	57188	broad.mit.edu	37	15	84651068	84651068	+	Silent	SNP	G	T	T	rs139222116		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr15:84651068G>T	uc002bjz.3	+	21	2912	c.2688G>T	c.(2686-2688)CCG>CCT	p.P896P	ADAMTSL3_uc010bmt.1_Silent_p.P896P|ADAMTSL3_uc010bmu.1_Silent_p.P896P	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	896	Ig-like C2-type 1.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			AGCAGGGTCCGCAGATCCTCA	0.403													9	97					1.12685e-05	1.25667e-05	1	0
LITAF	9516	broad.mit.edu	37	16	11650451	11650451	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr16:11650451C>T	uc002daz.2	-	2	369	c.136G>A	c.(136-138)GGG>AGG	p.G46R	LITAF_uc002dba.2_Missense_Mutation_p.G46R|LITAF_uc002dbb.2_Missense_Mutation_p.G46R|LITAF_uc002dbc.2_Missense_Mutation_p.G46R|LITAF_uc002dbd.2_Missense_Mutation_p.G46R|LITAF_uc002dbe.3_Missense_Mutation_p.G46R	NM_004862	NP_004853	Q99732	LITAF_HUMAN	lipopolysaccharide-induced TNF-alpha factor	46					apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|lysosomal membrane	signal transducer activity|WW domain binding			liver(1)	1						GTCACAAGCCCCGTAGTTGGC	0.567													4	106					0	0	0	0
DNAH3	55567	broad.mit.edu	37	16	21014470	21014470	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr16:21014470G>A	uc010vbe.1	-	42	6082	c.6082C>T	c.(6082-6084)CAG>TAG	p.Q2028*		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2028					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GTGATATACTGTGTCCACGTT	0.388													64	202					0	0	0	0
CENPT	80152	broad.mit.edu	37	16	67865119	67865119	+	Missense_Mutation	SNP	T	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr16:67865119T>A	uc002eun.3	-	10	1252	c.703A>T	c.(703-705)AAC>TAC	p.N235Y	CENPT_uc002eum.3_Missense_Mutation_p.N235Y|CENPT_uc010vkc.1_5'UTR|CENPT_uc010vkd.1_5'UTR|CENPT_uc010vke.1_Missense_Mutation_p.S132C	NM_025082	NP_079358	Q96BT3	CENPT_HUMAN	centromere protein T	235					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		CCAACCTTACTTGGAGGAGCC	0.612													6	283					0	0	0	0
TERF2	7014	broad.mit.edu	37	16	69419369	69419369	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr16:69419369C>T	uc002exd.2	-	2	399	c.274G>A	c.(274-276)GGG>AGG	p.G92R	TERF2_uc002exe.2_Missense_Mutation_p.G92R	NM_005652	NP_005643	Q15554	TERF2_HUMAN	telomeric repeat binding factor 2	92	TRFH dimerization.				age-dependent telomere shortening|cell cycle|cellular senescence|negative regulation of telomere maintenance via semi-conservative replication|protection from non-homologous end joining at telomere|protein localization to chromosome, telomeric region|regulation of transcription, DNA-dependent|telomeric loop formation	Golgi apparatus|nuclear telomere cap complex|nucleoplasm	double-stranded telomeric DNA binding|protein C-terminus binding|protein homodimerization activity			lung(1)	1		Ovarian(137;0.101)				TGCTCCTTCCCCAAGGGCCTG	0.587													8	216					0	0	0	0
ZNF19	7567	broad.mit.edu	37	16	71509834	71509834	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr16:71509834G>A	uc010cgc.1	-	6	1122	c.616C>T	c.(616-618)CGG>TGG	p.R206W	ZNF23_uc002fai.2_Intron|ZNF19_uc002fak.1_Missense_Mutation_p.R194W|ZNF19_uc002fal.1_Missense_Mutation_p.R194W|ZNF19_uc002fam.1_Missense_Mutation_p.R206W	NM_006961	NP_008892	P17023	ZNF19_HUMAN	zinc finger protein 19	206	C2H2-type 2.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(137;0.00965)		BRCA - Breast invasive adenocarcinoma(221;0.0161)|Kidney(780;0.0598)		CTCTGGTGCCGAATTAACGAA	0.443													46	41					0	0	0	0
ATP2C2	9914	broad.mit.edu	37	16	84492949	84492949	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr16:84492949A>G	uc002fhx.2	+	23	2379	c.2290A>G	c.(2290-2292)ATC>GTC	p.I764V	ATP2C2_uc010chj.2_Missense_Mutation_p.I764V|ATP2C2_uc002fhy.2_Missense_Mutation_p.I781V|ATP2C2_uc002fhz.2_Missense_Mutation_p.I613V|ATP2C2_uc002fia.2_5'Flank	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	764	Helical; Name=6; (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						CGCCATGCAGATCCTATGGAT	0.637													69	122					0	0	0	0
TSR1	55720	broad.mit.edu	37	17	2234293	2234293	+	Missense_Mutation	SNP	G	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:2234293G>C	uc002fuj.2	-	9	2564	c.1607C>G	c.(1606-1608)ACT>AGT	p.T536S	SNORD91B_uc002fuk.1_5'Flank|SNORD91A_uc002ful.1_5'Flank	NM_018128	NP_060598	Q2NL82	TSR1_HUMAN	TSR1, 20S rRNA accumulation	536					ribosome assembly	nucleolus	protein binding			ovary(1)	1						GCTTTTCCTAGTGTTAGTAAA	0.393													14	130					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7577017	7577017	+	Splice_Site	SNP	A	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:7577017A>C	uc002gim.2	-	8	1113	c.919_splice	c.e8+1	p.A307_splice	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Splice_Site_p.A307_splice|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Splice_Site_p.A175_splice|TP53_uc010cng.1_Splice_Site_p.A175_splice|TP53_uc002gii.1_Splice_Site_p.A175_splice|TP53_uc010cnh.1_Splice_Site_p.A307_splice|TP53_uc010cni.1_Splice_Site_p.A307_splice|TP53_uc002gij.2_Splice_Site_p.A307_splice	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a						activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.0?(7)|p.?(6)|p.A307fs*34(1)|p.L308fs*31(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CTGCTTGCTTACCTCGCTTAG	0.557		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			119	66					0	0	0	0
GLP2R	9340	broad.mit.edu	37	17	9739771	9739771	+	Missense_Mutation	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:9739771T>C	uc002gmd.1	+	3	361	c.361T>C	c.(361-363)TAC>CAC	p.Y121H	GLP2R_uc010cog.1_RNA	NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	121	Extracellular (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	CTGCCCTTCATACTTACCTTG	0.448													96	214					0	0	0	0
MYH13	8735	broad.mit.edu	37	17	10233707	10233707	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:10233707C>T	uc002gmk.1	-	21	2522	c.2432G>A	c.(2431-2433)AGG>AAG	p.R811K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	811	IQ.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GTGTCACCTCCTCTCCATCAT	0.537													3	31					0	0	0	0
TTC19	54902	broad.mit.edu	37	17	15929998	15929998	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:15929998G>A	uc002gph.1	+	9	1357	c.1339G>A	c.(1339-1341)GCA>ACA	p.A447T	TTC19_uc010cox.1_RNA|TTC19_uc002gpk.3_Missense_Mutation_p.A89T|TTC19_uc002gpj.2_Missense_Mutation_p.A89T	NM_017775	NP_060245	Q6DKK2	TTC19_HUMAN	tetratricopeptide repeat domain 19	326	TPR 5.				cell cycle|cytokinesis|mitochondrial respiratory chain complex III assembly	centrosome|midbody|mitochondrial inner membrane	protein binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		TAATCTAGCTGCAGTTTTGAT	0.428													16	108					0	0	0	0
SYNRG	11276	broad.mit.edu	37	17	35913812	35913812	+	Silent	SNP	T	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:35913812T>A	uc002hoa.2	-	14	2096	c.2013A>T	c.(2011-2013)GGA>GGT	p.G671G	SYNRG_uc010wde.1_Silent_p.G593G|SYNRG_uc010wdf.1_Silent_p.G593G|SYNRG_uc002hoc.2_Silent_p.G592G|SYNRG_uc002hoe.2_Silent_p.G593G|SYNRG_uc002hod.2_Silent_p.G593G|SYNRG_uc010wdg.1_Silent_p.G510G|SYNRG_uc002hob.2_Silent_p.G671G|SYNRG_uc002hof.2_Silent_p.G383G|SYNRG_uc010cvd.1_Silent_p.G471G	NM_007247	NP_009178	Q9UMZ2	SYNRG_HUMAN	synergin, gamma isoform 1	671	Interaction with A1P1G1 and A1P1G2.				endocytosis|intracellular protein transport	AP-1 adaptor complex	calcium ion binding			ovary(2)	2						GGCTGAATTCTCCAAAATCAT	0.418													66	36					0	0	0	0
RAPGEFL1	51195	broad.mit.edu	37	17	38340838	38340838	+	Silent	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:38340838A>G	uc010cwu.1	+	4	613	c.123A>G	c.(121-123)CTA>CTG	p.L41L		NM_016339	NP_057423	Q9UHV5	RPGFL_HUMAN	Rap guanine nucleotide exchange factor	247					G-protein coupled receptor protein signaling pathway|nervous system development|small GTPase mediated signal transduction	intracellular|membrane fraction	guanyl-nucleotide exchange factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TCCAGGATCTATACCTGCTAA	0.552													3	15					0	0	0	0
KRTAP4-5	85289	broad.mit.edu	37	17	39305839	39305839	+	Missense_Mutation	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:39305839A>T	uc002hwb.2	-	1	216	c.181T>A	c.(181-183)TGC>AGC	p.C61S		NM_033188	NP_149445	Q9BYR2	KRA45_HUMAN	keratin associated protein 4-5	61	27 X 5 AA repeats of C-C-[GRQVCHIEK]- [SPTR]-[VSTQYC].|9.					keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000371)			ctggagatgcagcagctaggg	0.274													3	30					0	0	0	0
LUC7L3	51747	broad.mit.edu	37	17	48823139	48823139	+	Missense_Mutation	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:48823139A>T	uc002isr.2	+	8	869	c.752A>T	c.(751-753)AAG>ATG	p.K251M	LUC7L3_uc010wmw.1_Missense_Mutation_p.K175M|LUC7L3_uc002isq.2_Missense_Mutation_p.K251M|LUC7L3_uc002iss.2_Missense_Mutation_p.K251M	NM_006107	NP_006098	O95232	LC7L3_HUMAN	LUC7-like 3	251	Arg/Ser-rich.|Glu-rich.				apoptosis|mRNA processing|response to stress|RNA splicing	focal adhesion|nuclear speck	DNA binding|mRNA binding|protein binding				0						AAAAAGGAGaagcaagaaaga	0.184													5	13					0	0	0	0
RNF213	57674	broad.mit.edu	37	17	78338337	78338338	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:78338337_78338338TC>AT	uc002jyh.1	+	17	6297_6298	c.6074_6075TC>AT	c.(6073-6075)GTC>GAT	p.V2025D	uc002jyi.1_Intron|RNF213_uc010dhw.1_Missense_Mutation_p.V407D	NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			ACCGAGCACGTCTTCTTACTAG	0.579													13	62					0	0	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14787090	14787090	+	Nonsense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr18:14787090G>A	uc010dlo.2	+	15	1905	c.1725G>A	c.(1723-1725)TGG>TGA	p.W575*	ANKRD30B_uc010xak.1_RNA	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	575										ovary(1)|skin(1)	2						AAAATTCTTGGGATTCTGAGG	0.318													3	47					0	0	0	0
ASXL3	80816	broad.mit.edu	37	18	31323177	31323177	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr18:31323177A>G	uc010dmg.1	+	12	3420	c.3365A>G	c.(3364-3366)CAG>CGG	p.Q1122R	ASXL3_uc002kxq.2_Missense_Mutation_p.Q829R	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1122					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						CATCTCTTCCAGACCTCTAAA	0.507													3	32					0	0	0	0
SERPINB4	6318	broad.mit.edu	37	18	61305189	61305189	+	Missense_Mutation	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr18:61305189C>G	uc002ljf.2	-	8	1023	c.937G>C	c.(937-939)GAC>CAC	p.D313H	SERPINB4_uc002lje.2_Missense_Mutation_p.D292H|SERPINB4_uc002ljg.2_Missense_Mutation_p.D313H	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	313					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CCTGAGAGGTCTGCATCCCCA	0.502													4	73					0	0	0	0
ZNF493	284443	broad.mit.edu	37	19	21607117	21607117	+	Missense_Mutation	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr19:21607117A>T	uc002npx.2	+	2	1552	c.1272A>T	c.(1270-1272)AAA>AAT	p.K424N	ZNF493_uc002npw.2_Missense_Mutation_p.K552N|ZNF493_uc002npy.2_Missense_Mutation_p.K424N	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	424	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						AATGTGGCAAAGCTTTTAATC	0.363													15	62					0	0	0	0
ZNF181	339318	broad.mit.edu	37	19	35232200	35232200	+	Missense_Mutation	SNP	T	G	G	rs143797666		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr19:35232200T>G	uc002nvu.3	+	4	1377	c.914T>G	c.(913-915)GTC>GGC	p.V305G	ZNF181_uc010xsa.1_Missense_Mutation_p.V304G|ZNF181_uc010xsb.1_Missense_Mutation_p.V304G|ZNF181_uc010xsc.1_Missense_Mutation_p.V240G	NM_001029997	NP_001025168	Q2M3W8	ZN181_HUMAN	zinc finger protein 181 isoform 1	305	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			TTTAGCCATGTCTCATCACTT	0.413													5	124					0	0	0	0
RYR1	6261	broad.mit.edu	37	19	38960132	38960132	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr19:38960132C>T	uc002oit.2	+	27	3874	c.3744C>T	c.(3742-3744)CCC>CCT	p.P1248P	RYR1_uc002oiu.2_Silent_p.P1248P	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	1248	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	AGCCAGTGCCCCTTGAACACC	0.552													5	150					0	0	0	0
PSG3	5671	broad.mit.edu	37	19	43237075	43237075	+	Silent	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr19:43237075A>T	uc002oue.2	-	3	702	c.570T>A	c.(568-570)ACT>ACA	p.T190T	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.T212T	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	190	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GCAAGCTGTGAGTCATAGGGA	0.502													128	302					0	0	0	0
CPT1C	126129	broad.mit.edu	37	19	50210775	50210775	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr19:50210775C>T	uc002ppj.2	+	12	1549	c.1344C>T	c.(1342-1344)CGC>CGT	p.R448R	CPT1C_uc002ppl.3_Silent_p.R414R|CPT1C_uc002ppi.2_Silent_p.R365R|CPT1C_uc002ppk.2_Silent_p.R437R|CPT1C_uc010eng.2_Silent_p.R448R|CPT1C_uc010enh.2_Silent_p.R448R|CPT1C_uc010ybc.1_Silent_p.R319R|CPT1C_uc010eni.1_Silent_p.R105R	NM_152359	NP_689572	Q8TCG5	CPT1C_HUMAN	carnitine palmitoyltransferase 1C isoform 2	448	Cytoplasmic (Potential).				fatty acid metabolic process	integral to membrane|mitochondrial outer membrane	carnitine O-palmitoyltransferase activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.107)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0011)|GBM - Glioblastoma multiforme(134;0.00786)		TCCCTGACAGCTGGTTTGACA	0.562													4	56					0	0	0	0
ZNF417	147687	broad.mit.edu	37	19	58420413	58420413	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr19:58420413C>T	uc002qqq.2	-	3	1432	c.1233G>A	c.(1231-1233)AAG>AAA	p.K411K	ZNF417_uc010yhm.1_Silent_p.K368K|ZNF417_uc002qqr.2_Silent_p.K410K	NM_152475	NP_689688	Q8TAU3	ZN417_HUMAN	zinc finger protein 417	411	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0151)		TCCCACATTCCTTGCACTCAT	0.453													6	177					0	0	0	0
MIR1301	100302246	broad.mit.edu	37	2	25551583	25551583	+	RNA	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:25551583C>T	hsa-mir-1301|MI0003815	-			c.8C>T			DNMT3A_uc002rgc.2_Intron|DNMT3A_uc002rgd.2_Intron|DNMT3A_uc010eyi.2_Intron|DNMT3A_uc002rge.2_Intron|DNMT3A_uc002rgf.2_Intron																	0						AGCGACCCCCCACAATCCCCA	0.622													5	12					0	0	0	0
OXER1	165140	broad.mit.edu	37	2	42991086	42991086	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:42991086G>A	uc002rss.2	-	1	316	c.234C>T	c.(232-234)TCC>TCT	p.S78S		NM_148962	NP_683765	Q8TDS5	OXER1_HUMAN	G-protein coupled receptor TG1019	78	Extracellular (Potential).|Ser-rich.				regulation of cAMP biosynthetic process	integral to membrane|plasma membrane	5(S)-hydroxyperoxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-hydroxy-6E,8Z,11Z,14Z-icosatetraenoic acid binding|5-oxo-6E,8Z,11Z,14Z-icosatetraenoic acid binding|G-protein coupled receptor activity			breast(1)	1						GCCCTCCAGAGGACCCCCCCA	0.393													7	53					0	0	0	0
NAT8	9027	broad.mit.edu	37	2	73868718	73868718	+	Missense_Mutation	SNP	T	C	C	rs74434404		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:73868718T>C	uc002sji.1	-	2	205	c.38A>G	c.(37-39)GAC>GGC	p.D13G		NM_003960	NP_003951	Q9UHE5	NAT8_HUMAN	N-acetyltransferase 8	13					gastrulation with mouth forming second|response to drug	integral to membrane	N-acetyltransferase activity			ovary(1)	1						CCACTGGCGGTCGCTCTCCTG	0.587													11	161					0	0	0	0
ARID5A	10865	broad.mit.edu	37	2	97218002	97218002	+	Silent	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:97218002C>A	uc002swe.2	+	7	1837	c.1737C>A	c.(1735-1737)GTC>GTA	p.V579V	ARID5A_uc010yuq.1_Silent_p.V527V|ARID5A_uc002swf.2_Silent_p.V415V|ARID5A_uc002swg.2_Silent_p.V527V	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	579					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						CACCACCAGTCACAACCTATG	0.617													36	134					1.69901e-12	1.99593e-12	1	0
WASH2P	375260	broad.mit.edu	37	2	114355998	114355998	+	Missense_Mutation	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:114355998C>G	uc002tkh.2	+	5	674	c.616C>G	c.(616-618)CAC>GAC	p.H206D	WASH2P_uc002tka.2_RNA|WASH2P_uc002tkb.2_RNA|WASH2P_uc002tkd.2_RNA	NM_182905	NP_878908			WAS protein family homolog 1												0						CCAAGGTGGGCACTTGATGTC	0.612													4	9					0	0	0	0
LOC440905	440905	broad.mit.edu	37	2	130792744	130792744	+	RNA	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:130792744G>T	uc002tpz.2	-	8		c.2585C>A				NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						TACAGCTAGTGGGAGATTGAC	0.488													8	68					5.68852e-11	6.61838e-11	1	0
ZEB2	9839	broad.mit.edu	37	2	145157513	145157513	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:145157513G>T	uc002tvu.2	-	8	1721	c.1241C>A	c.(1240-1242)CCC>CAC	p.P414H	ZEB2_uc002tvv.2_Missense_Mutation_p.P408H|ZEB2_uc010zbm.1_Missense_Mutation_p.P385H|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.P443H	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	414						cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		ATTCATAAAGGGACTAGTGCC	0.448													6	140					0.00198382	0.00206933	1	0
RIF1	55183	broad.mit.edu	37	2	152324992	152324992	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:152324992A>G	uc002txm.2	+	32	6882	c.6752A>G	c.(6751-6753)AAT>AGT	p.N2251S	RIF1_uc002txl.2_Intron|RIF1_uc002txn.2_Intron|RIF1_uc002txo.2_Intron|RIF1_uc002txp.2_RNA	NM_018151	NP_060621	Q5UIP0	RIF1_HUMAN	RAP1 interacting factor 1	2251	Interaction with condensed chromosomes in telophase.				cell cycle|response to DNA damage stimulus	chromosome, telomeric region|cytoplasm|nucleus|spindle	binding			ovary(5)|breast(4)|skin(3)|lung(2)|kidney(1)	15				BRCA - Breast invasive adenocarcinoma(221;0.0429)		ATCTAGCATAATACCACTTCA	0.348													60	205					0	0	0	0
XIRP2	129446	broad.mit.edu	37	2	168100963	168100963	+	Missense_Mutation	SNP	T	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:168100963T>G	uc002udx.2	+	8	3079	c.3061T>G	c.(3061-3063)TTT>GTT	p.F1021V	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.F846V|XIRP2_uc010fpq.2_Missense_Mutation_p.F799V|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	846	Xin 14.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAGGTGGCTTTTTGAAACAAG	0.368													6	93					0	0	0	0
XIRP2	129446	broad.mit.edu	37	2	168106123	168106123	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:168106123C>A	uc002udx.2	+	8	8239	c.8221C>A	c.(8221-8223)CAA>AAA	p.Q2741K	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.Q2566K|XIRP2_uc010fpq.2_Missense_Mutation_p.Q2519K|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Missense_Mutation_p.Q87K	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2566					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GATTGATGTTCAAACCTTTAC	0.338													11	130					1.58986e-06	1.78952e-06	1	0
TTN	7273	broad.mit.edu	37	2	179579856	179579856	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:179579856C>T	uc010zfg.1	-	87	22549	c.22325G>A	c.(22324-22326)GGC>GAC	p.G7442D	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G4103D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8369							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTACTTCTTGCCGCTCCTAAG	0.443													7	432					0	0	0	0
SLC19A3	80704	broad.mit.edu	37	2	228560672	228560672	+	Missense_Mutation	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:228560672T>C	uc002vpi.2	-	4	1194	c.1105A>G	c.(1105-1107)ATC>GTC	p.I369V	SLC19A3_uc002vpj.2_RNA|SLC19A3_uc010zlv.1_Missense_Mutation_p.I365V	NM_025243	NP_079519	Q9BZV2	S19A3_HUMAN	solute carrier family 19, member 3	369	Extracellular (Potential).				thiamine-containing compound metabolic process	integral to membrane|plasma membrane	folic acid binding|reduced folate carrier activity|thiamine uptake transmembrane transporter activity			ovary(2)	2		Renal(207;0.0112)|all_lung(227;0.0335)|Lung NSC(271;0.142)|all_hematologic(139;0.21)|Esophageal squamous(248;0.236)		Epithelial(121;1.58e-10)|all cancers(144;8.55e-08)|Lung(261;0.00948)|LUSC - Lung squamous cell carcinoma(224;0.0125)	L-Cysteine(DB00151)	CACGCCCAGATATTGGCTGTG	0.428													6	109					0	0	0	0
FASTKD5	60493	broad.mit.edu	37	20	3128841	3128841	+	Silent	SNP	A	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr20:3128841A>C	uc002whz.2	-	2	1187	c.876T>G	c.(874-876)CGT>CGG	p.R292R	uc002whv.1_Intron|UBOX5_uc002whw.2_Intron|UBOX5_uc002whx.2_Intron|UBOX5_uc002why.1_Intron	NM_021826	NP_068598	Q7L8L6	FAKD5_HUMAN	FAST kinase domains 5	292					apoptosis|cellular respiration	mitochondrion	ATP binding|protein kinase activity				0						GGGATACCTGACGATTTTCAC	0.343													14	150					0	0	0	0
NAA20	51126	broad.mit.edu	37	20	20013236	20013236	+	Silent	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr20:20013236A>T	uc002wrp.2	+	5	494	c.390A>T	c.(388-390)GTA>GTT	p.V130V	NAA20_uc002wrq.2_Intron|NAA20_uc002wrr.2_Silent_p.V118V	NM_016100	NP_057184	P61599	NAA20_HUMAN	N-acetyltransferase 5 isoform a	130	N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity				0						GCTACAGTGTATATAGGACGG	0.438													12	62					0	0	0	0
EMILIN3	90187	broad.mit.edu	37	20	39990016	39990016	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr20:39990016C>T	uc002xjy.1	-	4	2417	c.2193G>A	c.(2191-2193)CTG>CTA	p.L731L		NM_052846	NP_443078	Q9NT22	EMIL3_HUMAN	elastin microfibril interfacer 3	731	Potential.					proteinaceous extracellular matrix				ovary(1)	1		Myeloproliferative disorder(115;0.00425)				GCGTACGATTCAGCTGGTCCA	0.687													26	34					0	0	0	0
CLDN17	26285	broad.mit.edu	37	21	31538876	31538876	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr21:31538876C>T	uc011acv.1	-	1	60	c.60G>A	c.(58-60)GGG>GGA	p.G20G		NM_012131	NP_036263	P56750	CLD17_HUMAN	claudin 17	20	Helical; (Potential).				calcium-independent cell-cell adhesion|tight junction assembly	Golgi apparatus|integral to membrane|tight junction	identical protein binding|structural molecule activity			ovary(2)	2						TGGCAAGAGTCCCCACCATGC	0.478													36	91					0	0	0	0
UMODL1	89766	broad.mit.edu	37	21	43529775	43529775	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr21:43529775C>T	uc002zaf.1	+	10	1623	c.1623C>T	c.(1621-1623)GAC>GAT	p.D541D	UMODL1_uc002zad.1_Silent_p.D469D|UMODL1_uc002zae.1_Silent_p.D469D|UMODL1_uc002zag.1_Silent_p.D541D|C21orf128_uc002zak.2_5'Flank	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	541	EGF-like 2; calcium-binding (Potential).|Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						CCACCAGGGACGCCACCCCCT	0.687													4	47					0	0	0	0
GCAT	23464	broad.mit.edu	37	22	38209492	38209492	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr22:38209492C>T	uc003atz.2	+	4	472	c.452C>T	c.(451-453)GCA>GTA	p.A151V	GCAT_uc003aua.1_Missense_Mutation_p.A177V	NM_014291	NP_055106	O75600	KBL_HUMAN	glycine C-acetyltransferase precursor	151					biosynthetic process|cellular amino acid metabolic process		glycine C-acetyltransferase activity|pyridoxal phosphate binding|transferase activity, transferring nitrogenous groups				0	Melanoma(58;0.045)				Glycine(DB00145)|Pyridoxal Phosphate(DB00114)	CCAGAGGACGCAGTCCTGTCG	0.607													5	14					0	0	0	0
TNRC6B	23112	broad.mit.edu	37	22	40660900	40660900	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr22:40660900G>A	uc011aor.1	+	5	877	c.666G>A	c.(664-666)TCG>TCA	p.S222S	TNRC6B_uc003aym.2_Intron|TNRC6B_uc003ayn.3_Silent_p.S222S|TNRC6B_uc003ayo.2_Silent_p.S26S	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	222					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						ACAGTGCCTCGAACCCTGGCT	0.498													55	105					0	0	0	0
EP300	2033	broad.mit.edu	37	22	41545804	41545804	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr22:41545804A>G	uc003azl.3	+	14	2814	c.2419A>G	c.(2419-2421)ATA>GTA	p.I807V		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	807					apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						GAACTCTCCTATAATGCCTCC	0.458			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				21	50					0	0	0	0
FBXL2	25827	broad.mit.edu	37	3	33427049	33427049	+	Silent	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:33427049A>G	uc003cfp.2	+	15	1292	c.1221A>G	c.(1219-1221)ACA>ACG	p.T407T	FBXL2_uc011axm.1_RNA|FBXL2_uc011axn.1_RNA|FBXL2_uc011axo.1_Silent_p.T302T|FBXL2_uc011axp.1_Silent_p.T323T|FBXL2_uc011axq.1_RNA|FBXL2_uc011axr.1_RNA|FBXL2_uc011axs.1_RNA	NM_012157	NP_036289	Q9UKC9	FBXL2_HUMAN	F-box and leucine-rich repeat protein 2	407					interspecies interaction between organisms|proteolysis	cytoplasm|membrane	protein binding|ubiquitin-protein ligase activity			large_intestine(1)	1						CCCCACCGACAGCAGTGGCAG	0.532													11	220					0	0	0	0
LARS2	23395	broad.mit.edu	37	3	45500356	45500356	+	Missense_Mutation	SNP	T	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:45500356T>G	uc003cop.1	+	8	913	c.728T>G	c.(727-729)ATT>AGT	p.I243S	LARS2_uc010hit.1_Missense_Mutation_p.I200S	NM_015340	NP_056155	Q15031	SYLM_HUMAN	leucyl-tRNA synthetase 2, mitochondrial	243					leucyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|leucine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.0122)|KIRC - Kidney renal clear cell carcinoma(197;0.0313)|Kidney(197;0.0372)	L-Leucine(DB00149)	CAATGGTTTATTAAGACAACC	0.498													24	45					0	0	0	0
GPR15	2838	broad.mit.edu	37	3	98251043	98251043	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:98251043G>A	uc011bgy.1	+	1	166	c.166G>A	c.(166-168)GGA>AGA	p.G56R		NM_005290	NP_005281	P49685	GPR15_HUMAN	G protein-coupled receptor 15	56	Cytoplasmic (Potential).					integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1		Lung NSC(201;7.93e-06)|all_neural(597;0.00172)|Hepatocellular(537;0.00825)|Myeloproliferative disorder(1037;0.0255)		Lung(72;0.246)		TGTTCTCATGGGAGCGTTGCA	0.498													9	111					0	0	0	0
C3orf15	89876	broad.mit.edu	37	3	119458167	119458167	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:119458167G>A	uc003ede.3	+	12	1604	c.1527G>A	c.(1525-1527)CAG>CAA	p.Q509Q	C3orf15_uc010hqy.1_Silent_p.Q509Q|C3orf15_uc010hqz.2_Silent_p.Q447Q|C3orf15_uc011bjd.1_Silent_p.Q383Q|C3orf15_uc011bje.1_Silent_p.Q489Q|C3orf15_uc010hra.1_Silent_p.Q270Q	NM_033364	NP_203528	Q7Z4T9	AAT1_HUMAN	AAT1-alpha	345						mitochondrion	protein binding			ovary(2)|pancreas(1)	3				GBM - Glioblastoma multiforme(114;0.186)		GAGTCGTTCAGAACATGGTGT	0.428													26	215					0	0	0	0
HGD	3081	broad.mit.edu	37	3	120365175	120365175	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:120365175G>A	uc003edw.2	-	9	958	c.588C>T	c.(586-588)ACC>ACT	p.T196T	HGD_uc003edv.2_Silent_p.T55T	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	196					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		TGTAGCCCCTGGTCTCCTCAA	0.463													94	65					0	0	0	0
ATR	545	broad.mit.edu	37	3	142275364	142275364	+	Missense_Mutation	SNP	T	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:142275364T>G	uc003eux.3	-	9	2061	c.1939A>C	c.(1939-1941)ATA>CTA	p.I647L		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	647					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCAAGGAATATTCTTCTTGGA	0.383								Other_conserved_DNA_damage_response_genes					107	184					0	0	0	0
SI	6476	broad.mit.edu	37	3	164772993	164772994	+	Nonsense_Mutation	DNP	CA	AT	AT			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:164772993_164772994CA>AT	uc003fei.2	-	13	1562_1563	c.1500_1501TG>AT	c.(1498-1503)GATGGA>GAATGA	p.500_501DG>E*		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	500_501	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ATCCAAAGTCCATCATATTGCA	0.327										HNSCC(35;0.089)			8	203					0	0	0	0
RTP2	344892	broad.mit.edu	37	3	187416695	187416695	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:187416695C>T	uc003fro.1	-	2	698	c.269G>A	c.(268-270)CGC>CAC	p.R90H		NM_001004312	NP_001004312	Q5QGT7	RTP2_HUMAN	receptor transporting protein 2	90	Cytoplasmic (Potential).				protein insertion into membrane	cell surface|integral to membrane|plasma membrane	olfactory receptor binding				0	all_cancers(143;4.06e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0515)		CTTGAAGACGCGCATGCGCAC	0.647													21	43					0	0	0	0
C3orf21	152002	broad.mit.edu	37	3	194790731	194790731	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:194790731C>A	uc003fum.3	-	4	1003	c.895G>T	c.(895-897)GCC>TCC	p.A299S	C3orf21_uc003ful.2_Missense_Mutation_p.A96S|C3orf21_uc003fuk.2_Missense_Mutation_p.A93S	NM_152531	NP_689744	Q8NBI6	CC021_HUMAN	hypothetical protein LOC152002	299						integral to membrane	transferase activity, transferring glycosyl groups				0	all_cancers(143;9.33e-09)|Ovarian(172;0.0634)		Epithelial(36;1.73e-20)|all cancers(36;1.42e-18)|OV - Ovarian serous cystadenocarcinoma(49;1.56e-17)|Lung(62;0.000117)|LUSC - Lung squamous cell carcinoma(58;0.000146)	GBM - Glioblastoma multiforme(46;1.36e-05)		TGGCGCATGGCCTCCAGGTTC	0.706													10	119					2.17888e-05	2.41875e-05	1	0
WDR1	9948	broad.mit.edu	37	4	10083023	10083023	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:10083023G>A	uc003gmf.2	-	11	1525	c.1242C>T	c.(1240-1242)GCC>GCT	p.A414A	WDR1_uc003gmg.2_Silent_p.A274A|WDR1_uc010idm.2_RNA|hsa-mir-3138|MI0014161_5'Flank	NM_017491	NP_059830	O75083	WDR1_HUMAN	WD repeat-containing protein 1 isoform 1	414					platelet activation|platelet degranulation|sensory perception of sound	cytoskeleton|cytosol|extracellular region	actin binding			ovary(2)|pancreas(1)	3				STAD - Stomach adenocarcinoma(129;0.000703)|Colorectal(103;0.0057)|LUSC - Lung squamous cell carcinoma(721;0.0232)		CGGGGCCGACGGCTACGCACT	0.572													3	70					0	0	0	0
BST1	683	broad.mit.edu	37	4	15709251	15709251	+	Missense_Mutation	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:15709251C>G	uc003goh.3	+	3	628	c.433C>G	c.(433-435)CGA>GGA	p.R145G		NM_004334	NP_004325	Q10588	BST1_HUMAN	bone marrow stromal cell antigen 1 precursor	145					humoral immune response|multicellular organismal development	anchored to membrane|extrinsic to membrane|plasma membrane	binding|NAD+ nucleosidase activity			central_nervous_system(1)	1						GAGCTGGTGTCGACAGAAAAA	0.358													54	115					0	0	0	0
YIPF7	285525	broad.mit.edu	37	4	44631497	44631497	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:44631497C>T	uc010ifx.1	-	4	438	c.421G>A	c.(421-423)GAT>AAT	p.D141N	YIPF7_uc010ify.1_3'UTR	NM_182592	NP_872398	Q8N8F6	YIPF7_HUMAN	Yip1 domain family, member 7	141						endoplasmic reticulum membrane|integral to membrane					0						ATGCTGCCATCTACTGGCTTC	0.403													3	9					0	0	0	0
UGT2B4	7363	broad.mit.edu	37	4	70360946	70360946	+	Missense_Mutation	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:70360946T>C	uc003hek.3	-	1	681	c.634A>G	c.(634-636)AAA>GAA	p.K212E	UGT2B4_uc011cap.1_Missense_Mutation_p.K76E|UGT2B4_uc003hel.3_Missense_Mutation_p.K212E	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	212					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						ATCATATTTTTTACCCTCTCT	0.363													19	52					0	0	0	0
GK2	2712	broad.mit.edu	37	4	80328069	80328069	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:80328069G>T	uc003hlu.2	-	1	1304	c.1286C>A	c.(1285-1287)ACC>AAC	p.T429N		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	429	ATP (By similarity).				glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						TTTGTTGTTGGTCATTCCTCC	0.428													45	103					1.76056e-25	2.09879e-25	1	0
EGF	1950	broad.mit.edu	37	4	110890205	110890205	+	Nonsense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:110890205G>T	uc003hzy.3	+	11	2106	c.1654G>T	c.(1654-1656)GAA>TAA	p.E552*	EGF_uc011cfu.1_Nonsense_Mutation_p.E510*|EGF_uc011cfv.1_Nonsense_Mutation_p.E552*	NM_001963	NP_001954	P01133	EGF_HUMAN	epidermal growth factor precursor	552	LDL-receptor class B 6.|Extracellular (Potential).				angiogenesis|DNA replication|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of secretion|platelet activation|platelet degranulation|positive regulation of catenin import into nucleus|positive regulation of epidermal growth factor receptor activity|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of calcium ion import|regulation of protein localization at cell surface	integral to membrane|plasma membrane|platelet alpha granule lumen	calcium ion binding|epidermal growth factor receptor binding|growth factor activity|transmembrane receptor protein tyrosine kinase activator activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Hepatocellular(203;0.0893)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-06)	Sulindac(DB00605)	GCTTATTGAGGAAGGAGTAGA	0.453													7	105					0.00198382	0.00206933	1	0
ACCN5	51802	broad.mit.edu	37	4	156751052	156751052	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:156751052G>T	uc003ipe.1	-	10	1521	c.1474C>A	c.(1474-1476)CCT>ACT	p.P492T		NM_017419	NP_059115	Q9NY37	ACCN5_HUMAN	amiloride-sensitive cation channel 5,	492	Cytoplasmic (Potential).					integral to membrane|plasma membrane				ovary(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0464)|Kidney(143;0.058)|COAD - Colon adenocarcinoma(41;0.141)		TGATTCTGAGGTGGAGGAGTC	0.338													5	62					0.00116845	0.00124019	1	0
ZDHHC11	79844	broad.mit.edu	37	5	825360	825360	+	Silent	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:825360T>C	uc011cma.1	-	8	1326	c.942A>G	c.(940-942)AAA>AAG	p.K314K	ZDHHC11_uc010itc.2_5'Flank|ZDHHC11_uc003jbj.2_RNA|ZDHHC11_uc010itd.1_RNA	NM_024786	NP_079062	Q9H8X9	ZDH11_HUMAN	zinc finger, DHHC-type containing 11	314						integral to membrane	acyltransferase activity|zinc ion binding			skin(1)|pancreas(1)	2			Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)			AGCTCTTGGCTTTGACTCTGG	0.552													13	186					0	0	0	0
SLC6A18	348932	broad.mit.edu	37	5	1246007	1246007	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:1246007G>A	uc003jby.1	+	12	1824	c.1701G>A	c.(1699-1701)GCG>GCA	p.A567A		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	567	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CGGGCTGGGCGCGCGCCGCCT	0.716													4	60					0	0	0	0
CLPTM1L	81037	broad.mit.edu	37	5	1321749	1321749	+	Splice_Site	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:1321749C>A	uc003jch.2	-	15	1462	c.1416_splice	c.e15+1	p.K472_splice	CLPTM1L_uc003jcg.2_Splice_Site_p.K303_splice	NM_030782	NP_110409	Q96KA5	CLP1L_HUMAN	CLPTM1-like						apoptosis	integral to membrane				breast(1)|central_nervous_system(1)	2	Lung NSC(6;5.78e-14)|all_lung(6;4.47e-13)|all_epithelial(6;4.47e-09)		Epithelial(17;0.00931)|OV - Ovarian serous cystadenocarcinoma(19;0.0116)|all cancers(22;0.0181)	KIRC - Kidney renal clear cell carcinoma(5;0.177)|Kidney(13;0.208)		GTCACACTCACCTTGTAGGTG	0.592													5	129					5.9392e-07	6.77965e-07	1	0
LPCAT1	79888	broad.mit.edu	37	5	1488528	1488528	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:1488528G>A	uc003jcm.2	-	5	762	c.645C>T	c.(643-645)ACC>ACT	p.T215T		NM_024830	NP_079106	Q8NF37	PCAT1_HUMAN	lysophosphatidylcholine acyltransferase 1	215	Lumenal (Potential).				phospholipid biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	1-acylglycerophosphocholine O-acyltransferase activity|1-alkylglycerophosphocholine O-acetyltransferase activity|calcium ion binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;0.0274)|all cancers(22;0.0534)	GBM - Glioblastoma multiforme(108;0.156)		TAATTAGGCAGGTCCTGTTTG	0.303													7	201					0	0	0	0
TARS	6897	broad.mit.edu	37	5	33455798	33455798	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:33455798G>A	uc003jhy.2	+	6	977	c.682G>A	c.(682-684)GCA>ACA	p.A228T	TARS_uc011cob.1_Missense_Mutation_p.A216T|TARS_uc010iup.1_Missense_Mutation_p.A169T|TARS_uc011coc.1_Missense_Mutation_p.A249T|TARS_uc003jhz.2_Missense_Mutation_p.A124T|TARS_uc011cod.1_Missense_Mutation_p.A107T	NM_152295	NP_689508	P26639	SYTC_HUMAN	threonyl-tRNA synthetase	228					threonyl-tRNA aminoacylation	cytosol	ATP binding|protein homodimerization activity|threonine-tRNA ligase activity			ovary(2)	2					L-Threonine(DB00156)	AACTTTACTGGCAATGTTTAA	0.373													16	195					0	0	0	0
TNPO1	3842	broad.mit.edu	37	5	72187641	72187641	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:72187641A>G	uc003kck.3	+	15	1853	c.1706A>G	c.(1705-1707)TAT>TGT	p.Y569C	TNPO1_uc011csj.1_Missense_Mutation_p.Y519C|TNPO1_uc003kch.2_Missense_Mutation_p.Y561C|TNPO1_uc003kci.3_Missense_Mutation_p.Y561C|TNPO1_uc003kcg.3_Missense_Mutation_p.Y561C	NM_002270	NP_002261	Q92973	TNPO1_HUMAN	transportin 1 isoform 1	569	HEAT 7.				interspecies interaction between organisms|mRNA metabolic process|protein import into nucleus, translocation	cytosol|nucleus	nuclear localization sequence binding|protein binding|protein transporter activity			skin(3)|urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)	7		Lung NSC(167;0.0053)|Ovarian(174;0.0175)		OV - Ovarian serous cystadenocarcinoma(47;6.14e-54)		AAATAGGAATATATTCAGATG	0.328													48	114					0	0	0	0
SIL1	64374	broad.mit.edu	37	5	138356974	138356974	+	Missense_Mutation	SNP	T	C	C	rs150156151		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:138356974T>C	uc003ldm.2	-	6	670	c.653A>G	c.(652-654)AAT>AGT	p.N218S	SIL1_uc003ldn.2_Missense_Mutation_p.N217S|SIL1_uc003ldo.2_Missense_Mutation_p.N218S|SIL1_uc003ldp.2_Missense_Mutation_p.N218S|SIL1_uc003ldq.1_Missense_Mutation_p.N11S	NM_022464	NP_071909	Q9H173	SIL1_HUMAN	SIL1 protein precursor	218	Interaction with HSPA5 and localization to the endoplasmic reticulum (By similarity).				intracellular protein transport|protein folding|transmembrane transport	endoplasmic reticulum lumen	unfolded protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			GTCCTGCGCATTGTCCATCTG	0.502									Marinesco-Sj_gren_syndrome				20	35					0	0	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250178	140250178	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:140250178G>A	uc003lia.2	+	1	2348	c.1490G>A	c.(1489-1491)CGG>CAG	p.R497Q	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.R497Q	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	497	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTGGAGCGGCGGTTGGGCGAC	0.672													16	119					0	0	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140779207	140779207	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:140779207G>A	uc003lkf.1	+	1	1513	c.1513G>A	c.(1513-1515)GCG>ACG	p.A505T	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Missense_Mutation_p.A505T	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	505	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GTCCATGAGCGCGCAAAGTGG	0.632													3	36					0	0	0	0
ARAP3	64411	broad.mit.edu	37	5	141041799	141041799	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:141041799G>A	uc003llm.2	-	20	2902	c.2824C>T	c.(2824-2826)CGG>TGG	p.R942W	ARAP3_uc003lll.2_5'UTR|ARAP3_uc011dbe.1_Missense_Mutation_p.R604W|ARAP3_uc003lln.2_Intron	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	942	Rho-GAP.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						CCCCCTTTCCGGTATACACCT	0.657													38	88					0	0	0	0
RNF14	9604	broad.mit.edu	37	5	141358230	141358230	+	Silent	SNP	T	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:141358230T>C	uc003lly.2	+	4	708	c.669T>C	c.(667-669)TGT>TGC	p.C223C	RNF14_uc003llz.2_Silent_p.C223C|RNF14_uc003lma.2_Silent_p.C223C|RNF14_uc003lmb.2_Silent_p.C97C|RNF14_uc003lmc.2_Silent_p.C223C|RNF14_uc011dbg.1_Intron|RNF14_uc011dbh.1_Intron|RNF14_uc003lmd.2_Silent_p.C223C	NM_183399	NP_899646	Q9UBS8	RNF14_HUMAN	ring finger protein 14 isoform 1	223	RING-type 1; atypical.				androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|protein ubiquitination|regulation of androgen receptor signaling pathway|regulation of transcription from RNA polymerase II promoter|response to estradiol stimulus|transcription, DNA-dependent	cytoplasm|nucleus	androgen receptor binding|small conjugating protein ligase activity|transcription coactivator activity|zinc ion binding				0		all_hematologic(541;0.0536)|Ovarian(839;0.118)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;0.0407)		GCAGTATCTGTTTCTGTGAGA	0.413													50	93					0	0	0	0
GCM2	9247	broad.mit.edu	37	6	10874289	10874289	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:10874289G>A	uc003mzn.3	-	5	1532	c.1460C>T	c.(1459-1461)TCC>TTC	p.S487F	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	487					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				ACTGACTGCGGAGCCCAGCCC	0.522													10	128					0	0	0	0
BTN3A2	11118	broad.mit.edu	37	6	26370583	26370583	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:26370583G>T	uc010jqh.1	+	5	726	c.467G>T	c.(466-468)GGT>GTT	p.G156V	BTN3A2_uc003nho.1_Missense_Mutation_p.G154V|BTN3A2_uc003nhp.2_Missense_Mutation_p.G156V|BTN3A2_uc011dkd.1_Missense_Mutation_p.G114V|BTN3A2_uc011dke.1_Missense_Mutation_p.G133V|BTN3A2_uc010jqi.1_Missense_Mutation_p.G154V	NM_007047	NP_008978	P78410	BT3A2_HUMAN	butyrophilin, subfamily 3, member A2 precursor	156	Extracellular (Potential).					integral to membrane					0						GAAGTGAAGGGTTATGAGGAT	0.453													7	146					2.7689e-08	3.1757e-08	1	0
HLA-DQA2	3118	broad.mit.edu	37	6	32713716	32713716	+	Missense_Mutation	SNP	G	C	C	rs35633399		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:32713716G>C	uc003obx.2	+	3	538	c.480G>C	c.(478-480)GAG>GAC	p.E160D		NM_020056	NP_064440	P01906	DQA2_HUMAN	major histocompatibility complex, class II, DQ	160	Alpha-2.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to plasma membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GTGTTTCTGAGACCAGCTTCC	0.493													8	376					0	0	0	0
SASH1	23328	broad.mit.edu	37	6	148865297	148865297	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:148865297C>T	uc003qme.1	+	18	3166	c.2691C>T	c.(2689-2691)AGC>AGT	p.S897S	SASH1_uc011eeb.1_Silent_p.S658S|SASH1_uc003qmf.1_Silent_p.S307S	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	897							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		TGACCCAAAGCAAGAGATTTT	0.537													9	271					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152523002	152523002	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:152523002G>A	uc010kiw.2	-	127	23704	c.23102C>T	c.(23101-23103)CCG>CTG	p.P7701L	SYNE1_uc010kiv.2_Missense_Mutation_p.P2225L|SYNE1_uc003qos.3_Missense_Mutation_p.P2225L|SYNE1_uc003qot.3_Missense_Mutation_p.P7630L|SYNE1_uc003qou.3_Missense_Mutation_p.P7701L|SYNE1_uc003qor.3_Missense_Mutation_p.P601L	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	7701	Cytoplasmic (Potential).|Spectrin 26.				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		ATGGTGATCCGGGAGAGACTG	0.433										HNSCC(10;0.0054)			12	99					0	0	0	0
CARD11	84433	broad.mit.edu	37	7	2956977	2956977	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:2956977G>A	uc003smv.2	-	20	3054	c.2650C>T	c.(2650-2652)CGG>TGG	p.R884W		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	884					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GGGCTGACCCGGGGGTCGCTT	0.547			Mis		DLBCL								11	63					0	0	0	0
C1GALT1	56913	broad.mit.edu	37	7	7278537	7278537	+	Missense_Mutation	SNP	A	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:7278537A>G	uc010ktn.2	+	3	1095	c.872A>G	c.(871-873)TAT>TGT	p.Y291C	C1GALT1_uc003sra.2_Missense_Mutation_p.Y291C|C1GALT1_uc010kto.1_Missense_Mutation_p.Y291C	NM_020156	NP_064541	Q9NS00	C1GLT_HUMAN	core 1 synthase,	291	Lumenal (Potential).				angiogenesis|cell differentiation|kidney development	integral to membrane	glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase activity|metal ion binding				0				UCEC - Uterine corpus endometrioid carcinoma (126;0.177)		AATTACAACTATTATCCTCCT	0.313													107	50					0	0	0	0
NOD1	10392	broad.mit.edu	37	7	30492295	30492295	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:30492295G>A	uc003tav.2	-	6	1261	c.738C>T	c.(736-738)GAC>GAT	p.D246D	NOD1_uc010kvs.2_Missense_Mutation_p.T201I	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	246	NACHT.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						GACACAGCCTGTCACTTTCCT	0.617													12	333					0	0	0	0
SFRP4	6424	broad.mit.edu	37	7	37955852	37955852	+	Silent	SNP	C	T	T	rs143563677		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:37955852C>T	uc003tfo.3	-	1	674	c.288G>A	c.(286-288)CCG>CCA	p.P96P		NM_003014	NP_003005	Q6FHJ7	SFRP4_HUMAN	secreted frizzled-related  protein 4 precursor	96	FZ.				brain development|cell differentiation|decidualization|embryo development|epithelium development|gonad development|mammary gland involution|menstrual cycle phase|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell proliferation|negative regulation of JNK cascade|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of sodium-dependent phosphate transport|phosphate ion homeostasis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epidermal cell differentiation|positive regulation of gene expression|positive regulation of receptor internalization|vasculature development|Wnt receptor signaling pathway	cell surface|cytoplasm|extracellular space|nucleus	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1						CCGACTTGCACGGCTTGATAG	0.632													10	90					0	0	0	0
C7orf10	79783	broad.mit.edu	37	7	40498705	40498705	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:40498705G>T	uc003thn.1	+	11	939	c.894G>T	c.(892-894)TTG>TTT	p.L298F	C7orf10_uc003thm.1_Missense_Mutation_p.L268F|C7orf10_uc003tho.1_Missense_Mutation_p.L250F	NM_024728	NP_079004	Q9HAC7	CG010_HUMAN	dermal papilla derived protein 13	305							transferase activity			ovary(2)	2						TTTAGATCTTGGATTTGCCTG	0.348													35	99					9.17885e-22	1.08886e-21	1	0
PKD1L1	168507	broad.mit.edu	37	7	47933651	47933651	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:47933651C>A	uc003tny.1	-	15	2277	c.2277G>T	c.(2275-2277)CAG>CAT	p.Q759H		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	759	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TGCCTTCAATCTGAACCTGCA	0.547													23	183					2.89027e-11	3.37896e-11	1	0
EGFR	1956	broad.mit.edu	37	7	55231431	55231431	+	Missense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:55231431C>A	uc003tqk.2	+	14	1883	c.1637C>A	c.(1636-1638)CCA>CAA	p.P546Q	EGFR_uc003tqi.2_Missense_Mutation_p.P546Q|EGFR_uc003tqj.2_Missense_Mutation_p.P546Q|EGFR_uc010kzg.1_Missense_Mutation_p.P501Q|EGFR_uc011kco.1_Missense_Mutation_p.P493Q|EGFR_uc011kcp.1_Intron|EGFR_uc011kcq.1_Intron|EGFR_uc003tqn.2_5'Flank	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	546	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	CTCAGTGAGCCAAGGGAGTTT	0.517		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			13	310					4.36969e-10	5.05964e-10	1	0
PCLO	27445	broad.mit.edu	37	7	82584021	82584021	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:82584021G>T	uc003uhx.2	-	5	6537	c.6248C>A	c.(6247-6249)ACC>AAC	p.T2083N	PCLO_uc003uhv.2_Missense_Mutation_p.T2083N	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2014					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGGGGCCTGGGTTGGGCTAGA	0.463													6	117					0.00116845	0.00124019	1	0
FZD1	8321	broad.mit.edu	37	7	90894572	90894572	+	Missense_Mutation	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:90894572A>T	uc003ula.2	+	1	790	c.377A>T	c.(376-378)GAC>GTC	p.D126V		NM_003505	NP_003496	Q9UP38	FZD1_HUMAN	frizzled 1 precursor	126	FZ.|Extracellular (Potential).				autocrine signaling|axonogenesis|brain development|canonical Wnt receptor signaling pathway involved in mesenchymal stem cell differentiation|canonical Wnt receptor signaling pathway involved in osteoblast differentiation|embryo development|epithelial cell differentiation|G-protein signaling, coupled to cGMP nucleotide second messenger|gonad development|lung alveolus development|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription, DNA-dependent|response to drug|vasculature development|Wnt receptor signaling pathway, calcium modulating pathway	apical part of cell|cell surface|cytoplasm|integral to membrane|neuron projection membrane	G-protein coupled receptor activity|PDZ domain binding|receptor binding|Wnt receptor activity|Wnt-protein binding				0	all_cancers(62;3.1e-10)|all_epithelial(64;1.66e-08)|Breast(17;0.000635)|Lung NSC(181;0.153)|all_lung(186;0.154)|all_hematologic(106;0.215)		STAD - Stomach adenocarcinoma(171;0.0134)			CTGTGCACGGACATCGCGTAC	0.632													17	84					0	0	0	0
COPG2	26958	broad.mit.edu	37	7	130295823	130295824	+	Splice_Site	DNP	CC	AA	AA			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:130295823_130295824CC>AA	uc003vqh.1	-	10	2236	c.2146_splice	c.e10-1	p.A716_splice		NM_012133	NP_036265	Q9UBF2	COPG2_HUMAN	coatomer protein complex, subunit gamma 2						intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat	protein binding|structural molecule activity				0	Melanoma(18;0.0435)					AAGACACTTACCCATCCTCAGT	0.366													6	123					0	0	0	0
WDR91	29062	broad.mit.edu	37	7	134889075	134889075	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:134889075G>A	uc003vsp.2	-	6	898	c.836C>T	c.(835-837)GCT>GTT	p.A279V	WDR91_uc010lmq.2_5'UTR|WDR91_uc010lmr.2_RNA	NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91	279										breast(2)|ovary(1)|skin(1)	4						AGGGCCCTGAGCAGGCGACAA	0.592													7	92					0	0	0	0
TRPV5	56302	broad.mit.edu	37	7	142630518	142630518	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:142630518G>T	uc003wby.1	-	1	303	c.39C>A	c.(37-39)AGC>AGA	p.S13R	TRPV5_uc003wbz.2_Missense_Mutation_p.S13R	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	13	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					TCTGGAGTTGGCTCCCGGGCC	0.517													10	160					3.86212e-05	4.26773e-05	1	0
CNTNAP2	26047	broad.mit.edu	37	7	147259261	147259261	+	Missense_Mutation	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:147259261A>T	uc003weu.1	+	12	2325	c.1809A>T	c.(1807-1809)AAA>AAT	p.K603N		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	603	Extracellular (Potential).|Fibrinogen C-terminal.				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			AAGCCTACAAACACCTAGGAC	0.448										HNSCC(39;0.1)			18	113					0	0	0	0
GIMAP6	474344	broad.mit.edu	37	7	150325305	150325305	+	Silent	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:150325305G>T	uc003whn.2	-	3	805	c.381C>A	c.(379-381)CTC>CTA	p.L127L	GIMAP6_uc003whm.2_Silent_p.L47L	NM_024711	NP_078987	Q6P9H5	GIMA6_HUMAN	GTPase, IMAP family member 6	127							GTP binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GTGTCACCAGGAGCACGGCGT	0.627													7	153					0.00198382	0.00206933	1	0
ABCB8	11194	broad.mit.edu	37	7	150737355	150737355	+	Missense_Mutation	SNP	G	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:150737355G>T	uc003wil.3	+	11	1362	c.1269G>T	c.(1267-1269)AGG>AGT	p.R423S	ABCB8_uc010lpw.1_Intron|ABCB8_uc010lpx.2_Missense_Mutation_p.R406S|ABCB8_uc011kvd.1_Missense_Mutation_p.R318S|ABCB8_uc003wim.3_Missense_Mutation_p.R201S|ABCB8_uc003wik.3_Missense_Mutation_p.R406S	NM_007188	NP_009119	Q9NUT2	ABCB8_HUMAN	ATP-binding cassette, sub-family B, member 8	423	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|membrane fraction|mitochondrial inner membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TTTCTGACAGGTCCATGGCCA	0.617													6	158					0.00116845	0.00124019	1	0
PSD3	23362	broad.mit.edu	37	8	18430163	18430163	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr8:18430163C>T	uc003wza.2	-	14	2762	c.2659G>A	c.(2659-2661)GGG>AGG	p.G887R	PSD3_uc003wyx.3_Missense_Mutation_p.G216R|PSD3_uc003wyy.2_Missense_Mutation_p.G353R|PSD3_uc003wyz.2_Missense_Mutation_p.G188R	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	888	PH.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		TTTATCCACCCTTGCATTTCC	0.428													18	279					0	0	0	0
LOXL2	4017	broad.mit.edu	37	8	23191125	23191125	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr8:23191125G>A	uc003xdh.1	-	5	1094	c.755C>T	c.(754-756)TCA>TTA	p.S252L	uc003xdj.2_5'Flank|uc003xdi.2_5'Flank	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	252	SRCR 2.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		CTTCCTCCGTGAGGCAAACAT	0.617													6	61					0	0	0	0
ADRA1A	148	broad.mit.edu	37	8	26627907	26627907	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr8:26627907C>T	uc003xfh.1	-	2	1596	c.1160G>A	c.(1159-1161)AGG>AAG	p.R387K	ADRA1A_uc003xfc.1_Missense_Mutation_p.R387K|ADRA1A_uc010lul.1_Intron|ADRA1A_uc003xfd.1_Intron|ADRA1A_uc003xfe.1_Missense_Mutation_p.R387K|ADRA1A_uc010lum.1_Intron|ADRA1A_uc003xff.1_Intron|ADRA1A_uc003xfg.1_Missense_Mutation_p.R387K	NM_000680	NP_000671	P35348	ADA1A_HUMAN	alpha-1A-adrenergic receptor isoform 1	387	Cytoplasmic (By similarity).			R -> G (in Ref. 9; AAK77197).	activation of phospholipase C activity|aging|apoptosis|calcium ion transport into cytosol|cell-cell signaling|intracellular protein kinase cascade|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of synaptic transmission, GABAergic|positive regulation of action potential|positive regulation of cardiac muscle contraction|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein kinase C signaling cascade|positive regulation of vasoconstriction|response to drug|response to hormone stimulus|response to stress|smooth muscle contraction	integral to plasma membrane	alpha1-adrenergic receptor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5		all_cancers(63;0.122)|Ovarian(32;2.61e-05)|all_epithelial(46;0.118)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;4.92e-10)|Colorectal(74;0.0132)|READ - Rectum adenocarcinoma(644;0.115)	Alfuzosin(DB00346)|Amiodarone(DB01118)|Amphetamine(DB00182)|Benzphetamine(DB00865)|Bethanidine(DB00217)|Carvedilol(DB01136)|Dapiprazole(DB00298)|Debrisoquin(DB04840)|Dextroamphetamine(DB01576)|Doxazosin(DB00590)|Epinastine(DB00751)|Epinephrine(DB00668)|Ergotamine(DB00696)|Flupenthixol(DB00875)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Labetalol(DB00598)|Lisdexamfetamine(DB01255)|Maprotiline(DB00934)|Mephentermine(DB01365)|Metaraminol(DB00610)|Methamphetamine(DB01577)|Methotrimeprazine(DB01403)|Methoxamine(DB00723)|Midodrine(DB00211)|Nefazodone(DB01149)|Nicergoline(DB00699)|Nilutamide(DB00665)|Norepinephrine(DB00368)|Norgestrel(DB00506)|Oxymetazoline(DB00935)|Perphenazine(DB00850)|Phendimetrazine(DB01579)|Phenoxybenzamine(DB00925)|Phenylephrine(DB00388)|Phenylpropanolamine(DB00397)|Prazosin(DB00457)|Promazine(DB00420)|Promethazine(DB01069)|Propericiazine(DB01608)|Propiomazine(DB00777)|Pseudoephedrine(DB00852)|Risperidone(DB00734)|Sertindole(DB06144)|Tamsulosin(DB00706)|Terazosin(DB01162)|Thioridazine(DB00679)|Tolazoline(DB00797)|Trazodone(DB00656)|Trifluoperazine(DB00831)|Ziprasidone(DB00246)	CTTGGAGATCCTGTAGAAGGT	0.562													14	274					0	0	0	0
PPP2CB	5516	broad.mit.edu	37	8	30657106	30657106	+	Nonsense_Mutation	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr8:30657106C>A	uc003xik.2	-	3	503	c.268G>T	c.(268-270)GGA>TGA	p.G90*		NM_004156	NP_004147	P62714	PP2AB_HUMAN	protein phosphatase 2, catalytic subunit, beta	90					protein dephosphorylation	chromosome, centromeric region|cytoplasm|nucleus|protein phosphatase type 2A complex|spindle pole	metal ion binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.095)|Kidney(114;0.114)	Vitamin E(DB00163)	GAATAATATCCTCTGTCTACA	0.343													11	253					6.42651e-13	7.58642e-13	1	0
CHD7	55636	broad.mit.edu	37	8	61778180	61778180	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr8:61778180C>T	uc003xue.2	+	38	9159	c.8682C>T	c.(8680-8682)CTC>CTT	p.L2894L		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	2894					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			ACCCTTTCCTCCTGTCCACAA	0.587													26	113					0	0	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768487	77768487	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr8:77768487C>T	uc003yav.2	+	10	9582	c.9195C>T	c.(9193-9195)CCC>CCT	p.P3065P	ZFHX4_uc003yau.1_Silent_p.P3110P|ZFHX4_uc003yaw.1_Silent_p.P3065P	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3065	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			TCCTTCTCCCCGGAATGAACG	0.527										HNSCC(33;0.089)			10	97					0	0	0	0
C8orf59	401466	broad.mit.edu	37	8	86127184	86127184	+	Missense_Mutation	SNP	T	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr8:86127184T>A	uc010mac.1	-	4	437	c.197A>T	c.(196-198)AAA>ATA	p.K66I	C8orf59_uc003ydd.2_Missense_Mutation_p.K66I|C8orf59_uc010mad.1_Missense_Mutation_p.K66I|C8orf59_uc003yde.2_Missense_Mutation_p.K66I|uc003ydc.1_RNA|C8orf59_uc011lfu.1_Intron	NM_001099670	NP_001093140	Q8N0T1	CH059_HUMAN	hypothetical protein LOC401466	66											0						TGAAATGCTTTTTGCGAAATG	0.294													9	31					0	0	0	0
VPS13B	157680	broad.mit.edu	37	8	100155309	100155309	+	Missense_Mutation	SNP	G	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr8:100155309G>C	uc003yiv.2	+	13	1870	c.1759G>C	c.(1759-1761)GAT>CAT	p.D587H	VPS13B_uc003yiw.2_Missense_Mutation_p.D587H|VPS13B_uc003yit.2_Missense_Mutation_p.D587H|VPS13B_uc003yiu.1_Missense_Mutation_p.D587H|VPS13B_uc003yix.1_Missense_Mutation_p.D58H	NM_017890	NP_060360	Q7Z7G8	VP13B_HUMAN	vacuolar protein sorting 13B isoform 5	587					protein transport					ovary(7)|skin(4)|lung(3)|central_nervous_system(2)|pancreas(2)|breast(1)|kidney(1)	20	Breast(36;3.73e-07)		OV - Ovarian serous cystadenocarcinoma(57;0.00636)			TTTTCGTTTGGATAGCAGTGC	0.388													10	266					0	0	0	0
KCNV2	169522	broad.mit.edu	37	9	2719000	2719000	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:2719000G>A	uc003zho.1	+	1	1475	c.1261G>A	c.(1261-1263)GGC>AGC	p.G421S		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	421	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		CATCGCCATGGGCATCTTCAC	0.637													11	75					0	0	0	0
DENND4C	55667	broad.mit.edu	37	9	19300201	19300201	+	Missense_Mutation	SNP	A	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:19300201A>T	uc003znq.2	+	5	508	c.475A>T	c.(475-477)ACC>TCC	p.T159S	DENND4C_uc011lnc.1_5'UTR	NM_017925	NP_060395	Q5VZ89	DEN4C_HUMAN	DENN/MADD domain containing 4C	159	DENN.|Helical; (Potential).					integral to membrane				ovary(1)|skin(1)	2						CAACTTTAGCACCTTGCTAAT	0.368													13	187					0	0	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971209	21971209	+	Splice_Site	SNP	T	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:21971209T>A	uc003zpk.2	-	2	363	c.151_splice	c.e2-1	p.V51_splice	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Splice_Site|CDKN2A_uc010miu.2_Splice_Site|CDKN2A_uc003zpl.2_Splice_Site_p.G106_splice	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1						cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(19)|p.V28_V51del(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CATCATGACCTGCCAGAGAGA	0.667		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			3	4					0	0	0	0
NCBP1	4686	broad.mit.edu	37	9	100433449	100433449	+	Missense_Mutation	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:100433449G>A	uc004axq.2	+	23	2800	c.2341G>A	c.(2341-2343)GTG>ATG	p.V781M		NM_002486	NP_002477	Q09161	NCBP1_HUMAN	nuclear cap binding protein subunit 1, 80kDa	781					gene silencing by RNA|histone mRNA metabolic process|mRNA 3'-end processing|mRNA capping|mRNA cleavage|mRNA export from nucleus|ncRNA metabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|positive regulation of mRNA 3'-end processing|positive regulation of viral transcription|regulation of translational initiation|spliceosomal snRNP assembly|termination of RNA polymerase II transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytosol|mRNA cap binding complex|nucleoplasm|ribonucleoprotein complex	protein binding|RNA cap binding			central_nervous_system(1)	1		Acute lymphoblastic leukemia(62;0.158)				TATCTTGGCCGTGTTCCAGCA	0.423													24	120					0	0	0	0
SEC61B	10952	broad.mit.edu	37	9	101992659	101992659	+	Missense_Mutation	SNP	G	C	C			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:101992659G>C	uc004azh.2	+	4	320	c.244G>C	c.(244-246)GCT>CCT	p.A82P		NM_006808	NP_006799	P60468	SC61B_HUMAN	Sec61 beta subunit	82	Helical; (Potential).				ER-associated protein catabolic process|protein import into nucleus, translocation|retrograde protein transport, ER to cytosol|transmembrane transport	endoplasmic reticulum Sec complex|integral to membrane	epidermal growth factor binding				0		Acute lymphoblastic leukemia(62;0.0559)				TCTGTTCATCGCTTCTGTATT	0.373													8	401					0	0	0	0
NR4A3	8013	broad.mit.edu	37	9	102606941	102606941	+	Missense_Mutation	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:102606941C>G	uc004baf.1	+	6	1994	c.1265C>G	c.(1264-1266)ACT>AGT	p.T422S	NR4A3_uc004bag.1_Missense_Mutation_p.T422S|NR4A3_uc004bai.2_Missense_Mutation_p.T433S	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	422					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				TACTGTCCCACTGACCAGGCT	0.498			T	EWSR1	extraskeletal myxoid chondrosarcoma								18	77					0	0	0	0
CYLC2	1539	broad.mit.edu	37	9	105767514	105767514	+	Missense_Mutation	SNP	G	C	C	rs146533245	byFrequency	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:105767514G>C	uc004bbs.2	+	5	671	c.601G>C	c.(601-603)GAC>CAC	p.D201H		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	201	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|2.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				CAAAGGCAAAGACTCGGCAAC	0.224													5	39					0	0	0	0
OR13F1	138805	broad.mit.edu	37	9	107267227	107267227	+	Silent	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:107267227C>A	uc011lvm.1	+	1	684	c.684C>A	c.(682-684)ATC>ATA	p.I228I		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	228	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						TCCTGAGAATCAGCTCAGTGG	0.473													147	168					1.35182e-49	1.64392e-49	1	0
DFNB31	25861	broad.mit.edu	37	9	117187304	117187304	+	Silent	SNP	C	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:117187304C>A	uc004biz.3	-	5	1816	c.1167G>T	c.(1165-1167)GGG>GGT	p.G389G	DFNB31_uc004bix.2_Missense_Mutation_p.R38S|DFNB31_uc004biy.3_Silent_p.G6G|DFNB31_uc004bja.3_Silent_p.G389G	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	389					inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CGCCAAGAAACCTGTGGGGAA	0.517													8	206					0.000157383	0.000170793	1	0
OLFML2A	169611	broad.mit.edu	37	9	127572376	127572376	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:127572376C>T	uc004bov.2	+	8	1757	c.1644C>T	c.(1642-1644)ATC>ATT	p.I548I	OLFML2A_uc004bow.2_Silent_p.I334I	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	548	Olfactomedin-like.										0						CCGAGGTGATCGTCCTGAGTC	0.662													47	46					0	0	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136324143	136324143	+	Silent	SNP	G	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:136324143G>A	uc004cdv.3	+	29	4569	c.4125G>A	c.(4123-4125)CAG>CAA	p.Q1375Q	ADAMTS13_uc004cdp.3_Missense_Mutation_p.G485S|ADAMTS13_uc004cdt.1_Silent_p.Q1319Q|ADAMTS13_uc004cdu.1_Silent_p.Q1288Q|ADAMTS13_uc004cdw.3_Silent_p.Q1319Q|ADAMTS13_uc004cdx.3_Silent_p.Q1288Q|ADAMTS13_uc004cdz.3_Silent_p.Q1045Q|ADAMTS13_uc004ceb.3_Silent_p.Q171Q|C9orf7_uc011mdg.1_5'Flank|C9orf7_uc004cec.2_5'Flank|C9orf7_uc011mdh.1_5'Flank|C9orf7_uc011mdi.1_5'Flank|C9orf7_uc010nan.2_5'Flank	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1375	CUB 2.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		ATGGGCAGCAGGTGCTCTACT	0.582													4	70					0	0	0	0
NOTCH1	4851	broad.mit.edu	37	9	139412299	139412299	+	Missense_Mutation	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:139412299C>T	uc004chz.2	-	8	1346	c.1346G>A	c.(1345-1347)TGC>TAC	p.C449Y		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	449	Extracellular (Potential).|EGF-like 11; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GTCGATCTCGCATCGGGGGCC	0.652			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			80	29					0	0	0	0
EGFL7	51162	broad.mit.edu	37	9	139563027	139563027	+	Silent	SNP	C	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:139563027C>T	uc004cid.2	+	4	1010	c.99C>T	c.(97-99)GTC>GTT	p.V33V	EGFL7_uc004cif.2_Silent_p.V33V|EGFL7_uc004cig.2_RNA|EGFL7_uc010nbp.2_Silent_p.V33V|EGFL7_uc004cie.2_Silent_p.V33V|EGFL7_uc004cih.2_Silent_p.V33V|MIR126_hsa-mir-126|MI0000471_5'Flank	NM_201446	NP_958854	Q9UHF1	EGFL7_HUMAN	EGF-like-domain, multiple 7	33	EMI.				angiogenesis|vasculogenesis		calcium ion binding			ovary(1)	1	all_cancers(76;0.109)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.87e-06)|Epithelial(140;0.000123)		TGTGTGCTGTCCGGGCTCACG	0.677													13	170					0	0	0	0
SH3KBP1	30011	broad.mit.edu	37	X	19555888	19555888	+	Missense_Mutation	SNP	T	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chrX:19555888T>G	uc004czm.2	-	17	2219	c.1903A>C	c.(1903-1905)AAA>CAA	p.K635Q	SH3KBP1_uc011mje.1_Missense_Mutation_p.K374Q|SH3KBP1_uc011mjf.1_Missense_Mutation_p.K397Q|SH3KBP1_uc004czl.2_Missense_Mutation_p.K598Q|SH3KBP1_uc010nfm.2_Missense_Mutation_p.K80Q	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	635	Potential.				apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						AATAACTGTTTAATCTCTCGT	0.438													61	27					0	0	0	0
FAM120C	54954	broad.mit.edu	37	X	54209176	54209176	+	Silent	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chrX:54209176C>G	uc004dsz.3	-	1	539	c.456G>C	c.(454-456)GCG>GCC	p.A152A	FAM120C_uc011moh.1_Silent_p.A152A|FAM120C_uc004dta.2_Silent_p.A152A	NM_017848	NP_060318	Q9NX05	F120C_HUMAN	hypothetical protein LOC54954	152										ovary(1)|central_nervous_system(1)	2						CCTGGCACAGCGCTGACAAGT	0.697													3	15					0	0	0	0
DCAF12L2	340578	broad.mit.edu	37	X	125298829	125298830	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chrX:125298829_125298830TG>AT	uc004euk.1	-	1	1105_1106	c.1078_1079CA>AT	c.(1078-1080)CAG>ATG	p.Q360M		NM_001013628	NP_001013650	Q5VW00	DC122_HUMAN	DDB1 and CUL4 associated factor 12-like 2	360	WD 4.									lung(2)|skin(2)|large_intestine(1)|pancreas(1)|ovary(1)	7						GATGATGTGCTGGTAGAAGCTC	0.639													12	85					0	0	0	0
ZNF75D	7626	broad.mit.edu	37	X	134427679	134427679	+	Missense_Mutation	SNP	C	G	G			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chrX:134427679C>G	uc004eyp.2	-	3	3043	c.388G>C	c.(388-390)GAG>CAG	p.E130Q	ZNF75D_uc004eym.2_Intron|ZNF75D_uc004eyn.2_5'Flank|ZNF75D_uc004eyo.2_Missense_Mutation_p.E130Q	NM_007131	NP_009062	P51815	ZN75D_HUMAN	zinc finger protein 75	130	SCAN box.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCATCAGGCTCCCTCTGCAAG	0.453													56	34					0	0	0	0
Unknown	0	broad.mit.edu	37	10	86535364	86535365	+	IGR	INS	-	TTC	TTC	rs72828679		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:86535364_86535365insTTC								FAM190B (257088 upstream) : GRID1 (823947 downstream)																							tttttctttttctttttttttt	0.000													---	---	---							
PGAM1	5223	broad.mit.edu	37	10	99186064	99186065	+	Translation_Start_Site	INS	-	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:99186064_99186065insA	uc001knh.2	+	1					uc001kng.1_5'Flank|PGAM1_uc009xvo.2_Translation_Start_Site|PGAM1_uc010qov.1_5'Flank	NM_002629	NP_002620	P18669	PGAM1_HUMAN	phosphoglycerate mutase 1						gluconeogenesis|glycolysis|regulation of glycolysis|regulation of pentose-phosphate shunt|respiratory burst	cytosol	2,3-bisphospho-D-glycerate 2-phosphohydrolase activity|bisphosphoglycerate mutase activity|phosphoglycerate mutase activity|protein kinase binding				0		Colorectal(252;0.162)		Epithelial(162;8.36e-10)|all cancers(201;5.62e-08)		AGCCCGCCGCCATGGCCGCCTA	0.713													---	---	---							
Unknown	0	broad.mit.edu	37	10	102816336	102816336	+	IGR	DEL	A	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr10:102816336delA								SFXN3 (15339 upstream) : KAZALD1 (4663 downstream)																							gaaggaaaggaaggaaggaaa	0.005													---	---	---							
Unknown	0	broad.mit.edu	37	11	39242389	39242409	+	IGR	DEL	AAAGGAAGGAAGGAAGGAAAA	-	-	rs72044273	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:39242389_39242409delAAAGGAAGGAAGGAAGGAAAA								None (None upstream) : LRRC4C (893344 downstream)																							aggaaggaagaaaggaaggaaggaaggaaaagaaaagaaaa	0.059													---	---	---							
Unknown	0	broad.mit.edu	37	11	44336453	44336454	+	IGR	INS	-	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:44336453_44336454insT								ALX4 (4737 upstream) : CD82 (250687 downstream)																							cttttccttccttccttccttc	0.025													---	---	---							
KBTBD4	55709	broad.mit.edu	37	11	47594940	47594940	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:47594940delC	uc001nfx.2	-	4	1270	c.1099delG	c.(1099-1101)GCTfs	p.A367fs	PTPMT1_uc001nfs.3_3'UTR|PTPMT1_uc001nfv.3_3'UTR|PTPMT1_uc009ylt.2_3'UTR|PTPMT1_uc001nfu.3_3'UTR|NDUFS3_uc001nft.3_Intron|KBTBD4_uc001nfw.1_Frame_Shift_Del_p.A392fs|KBTBD4_uc001nfz.2_Frame_Shift_Del_p.A383fs|KBTBD4_uc001nfy.2_Frame_Shift_Del_p.A367fs	NM_016506	NP_057590	Q9NVX7	KBTB4_HUMAN	kelch repeat and BTB (POZ) domain containing 4	367	Kelch 3.									ovary(1)|central_nervous_system(1)	2						CCTGACACAGCCACCTCTAGC	0.507													---	---	---							
FAM111B	374393	broad.mit.edu	37	11	58892538	58892542	+	Frame_Shift_Del	DEL	AAATT	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:58892538_58892542delAAATT	uc001nnl.2	+	4	1211_1215	c.968_972delAAATT	c.(967-972)CAAATTfs	p.Q323fs	FAM111B_uc001nnm.2_Frame_Shift_Del_p.Q293fs|FAM111B_uc010rko.1_Frame_Shift_Del_p.Q293fs	NM_198947	NP_945185	Q6SJ93	F111B_HUMAN	hypothetical protein LOC374393 isoform a	323_324							catalytic activity			ovary(2)	2						AGCAGAGAGCAAATTCTCCCACCTC	0.366													---	---	---							
Unknown	0	broad.mit.edu	37	11	71567049	71567050	+	IGR	INS	-	AAA	AAA	rs150158648	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr11:71567049_71567050insAAA								DEFB108B (18442 upstream) : RNF121 (72718 downstream)																							TGGCCCCATTCAAAAAAGAAAA	0.351													---	---	---							
Unknown	0	broad.mit.edu	37	12	5463013	5463015	+	IGR	DEL	AAG	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr12:5463013_5463015delAAG								KCNA5 (307065 upstream) : NTF3 (78265 downstream)																							gaaggaaggaaagaagaaaggaa	0.000													---	---	---							
Unknown	0	broad.mit.edu	37	13	77920486	77920487	+	IGR	INS	-	TA	TA	rs139699584	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr13:77920486_77920487insTA								MYCBP2 (19309 upstream) : SCEL (189322 downstream)																							gtgtgtgtgtgtgtgtgtgtgt	0.287													---	---	---							
NRXN3	9369	broad.mit.edu	37	14	79933679	79933679	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr14:79933679delG	uc001xun.2	+	13	2750	c.2259delG	c.(2257-2259)GTGfs	p.V753fs	NRXN3_uc001xum.1_RNA|NRXN3_uc001xup.2_RNA|NRXN3_uc001xuq.2_Frame_Shift_Del_p.V121fs|NRXN3_uc010asw.2_Frame_Shift_Del_p.V121fs|NRXN3_uc001xur.3_Frame_Shift_Del_p.V121fs	NM_004796	NP_004787	Q9Y4C0	NRX3A_HUMAN	neurexin 3 isoform 1 precursor	1126	Extracellular (Potential).|Laminin G-like 6.				axon guidance|cell adhesion	integral to plasma membrane	metal ion binding|receptor activity			ovary(3)|upper_aerodigestive_tract(2)|pancreas(2)|central_nervous_system(1)|breast(1)|skin(1)	10		Renal(4;0.00876)		BRCA - Breast invasive adenocarcinoma(234;0.00544)|Kidney(3;0.029)|KIRC - Kidney renal clear cell carcinoma(182;0.223)		GCACCACTGTGAAGGATGGCA	0.562													---	---	---							
MIR539	664612	broad.mit.edu	37	14	101513129	101513130	+	5'Flank	INS	-	TGG	TGG	rs138069781	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr14:101513129_101513130insTGG	hsa-mir-539|MI0003514	+						MIR889_hsa-mir-889|MI0005540_5'Flank|MIR544_hsa-mir-544|MI0003515_5'Flank|MIR655_hsa-mir-655|MI0003677_5'Flank																	0						GAAACTATCATtggtggtggtg	0.213													---	---	---							
Unknown	0	broad.mit.edu	37	15	22118556	22118559	+	IGR	DEL	AATA	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr15:22118556_22118559delAATA								CXADRP2 (101678 upstream) : LOC727924 (159473 downstream)																							TTGTAATAAGAATATATAGCTCAA	0.324													---	---	---							
LINGO1	84894	broad.mit.edu	37	15	77907760	77907760	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr15:77907760delA	uc002bct.1	-	2	541	c.489delT	c.(487-489)TTTfs	p.F163fs	LINGO1_uc002bcu.1_Frame_Shift_Del_p.F157fs	NM_032808	NP_116197	Q96FE5	LIGO1_HUMAN	leucine-rich repeat neuronal 6A	163	Extracellular (Potential).|LRR 4.				negative regulation of axonogenesis|nerve growth factor receptor signaling pathway	integral to membrane|plasma membrane				ovary(1)|lung(1)	2						ACAGGTCCTGAAACATGTAGT	0.552													---	---	---							
Unknown	0	broad.mit.edu	37	16	66921856	66921856	+	IGR	DEL	A	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr16:66921856delA								PDP2 (1 upstream) : CDH16 (20170 downstream)																							actctgtctcaaaaaaaaaaa	0.030													---	---	---							
KCNAB3	9196	broad.mit.edu	37	17	7829006	7829007	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:7829006_7829007insT	uc002gjm.1	-	7	532_533	c.532_533insA	c.(532-534)ATTfs	p.I178fs	KCNAB3_uc010vul.1_RNA	NM_004732	NP_004723	O43448	KCAB3_HUMAN	potassium voltage-gated channel, shaker-related	178						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(1)	1		Prostate(122;0.157)				CTCACCCTCAATGATGTGCTTT	0.500													---	---	---							
MYH13	8735	broad.mit.edu	37	17	10277810	10277811	+	5'Flank	INS	-	CTTC	CTTC	rs78781642	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr17:10277810_10277811insCTTC	uc002gmk.1	-							NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle						muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						AAGTATTTTCTcttccttcctt	0.188													---	---	---							
Unknown	0	broad.mit.edu	37	18	53470750	53470757	+	IGR	DEL	CTCTTTCC	-	-	rs142683624	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr18:53470750_53470757delCTCTTTCC								TCF4 (167565 upstream) : TXNL1 (799298 downstream)																							ttctttctctctctttcctCCCTCCCTC	0.058													---	---	---							
ITPKC	80271	broad.mit.edu	37	19	41223266	41223267	+	Frame_Shift_Ins	INS	-	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr19:41223266_41223267insT	uc002oot.2	+	1	259_260	c.226_227insT	c.(226-228)CTCfs	p.L76fs	ADCK4_uc002ooq.1_5'Flank|ADCK4_uc002oor.2_5'Flank|ADCK4_uc002oos.2_5'Flank	NM_025194	NP_079470	Q96DU7	IP3KC_HUMAN	inositol 1,4,5-trisphosphate 3-kinase C	76						cytoplasm|nucleus	ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity				0			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			GAGGGCCGGCCTCGGGCCTGCG	0.490													---	---	---							
LRP1B	53353	broad.mit.edu	37	2	141110541	141110542	+	Frame_Shift_Ins	INS	-	TT	TT	rs144480841		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr2:141110541_141110542insTT	uc002tvj.1	-	76	12602_12603	c.11630_11631insAA	c.(11629-11631)AATfs	p.N3877fs		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3877	Extracellular (Potential).|EGF-like 9.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TGCAGGTGTTATTTCTTTCTTG	0.307										TSP Lung(27;0.18)			---	---	---							
Unknown	0	broad.mit.edu	37	20	46109788	46109797	+	IGR	DEL	TTTCTTTCTT	-	-	rs144321422	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr20:46109788_46109797delTTTCTTTCTT								ZMYND8 (124314 upstream) : NCOA3 (20860 downstream)																							ccttcctttctttctttctttttctttctt	0.000													---	---	---							
RBM11	54033	broad.mit.edu	37	21	15585612	15585613	+	5'Flank	INS	-	TTCC	TTCC	rs145138104	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr21:15585612_15585613insTTCC	uc002yjo.3	+						RBM11_uc002yjn.3_5'Flank|RBM11_uc002yjp.3_5'Flank	NM_144770	NP_658983	P57052	RBM11_HUMAN	RNA binding motif protein 11								nucleotide binding|RNA binding				0				Epithelial(23;0.000314)|COAD - Colon adenocarcinoma(22;0.00242)|Colorectal(24;0.0129)|Lung(58;0.141)		GCCAAcctcctttccttccttc	0.144													---	---	---							
SUN2	25777	broad.mit.edu	37	22	39141797	39141797	+	Frame_Shift_Del	DEL	G	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr22:39141797delG	uc003awh.1	-	9	989	c.705delC	c.(703-705)CCCfs	p.P235fs	SUN2_uc011anz.1_Frame_Shift_Del_p.P270fs|SUN2_uc011aoa.1_Frame_Shift_Del_p.P224fs|SUN2_uc003awi.1_Frame_Shift_Del_p.P235fs|SUN2_uc010gxq.1_Frame_Shift_Del_p.P256fs|SUN2_uc010gxr.1_Frame_Shift_Del_p.P235fs|SUN2_uc010gxs.1_Frame_Shift_Del_p.P235fs	NM_015374	NP_056189	Q9UH99	SUN2_HUMAN	unc-84 homolog B	235	Perinuclear space.				centrosome localization|cytoskeletal anchoring at nuclear membrane|mitotic spindle organization|nuclear envelope organization|nuclear matrix anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	endosome membrane|integral to membrane|nuclear inner membrane|SUN-KASH complex	lamin binding|microtubule binding			large_intestine(1)|skin(1)	2						GCAGCCCATAGGGGTAGAAAT	0.622													---	---	---							
NUP50	10762	broad.mit.edu	37	22	45579372	45579372	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr22:45579372delA	uc003bfr.2	+	7	1637	c.1175delA	c.(1174-1176)CAGfs	p.Q392fs	NUP50_uc003bfs.2_Frame_Shift_Del_p.Q364fs|NUP50_uc011aqn.1_Frame_Shift_Del_p.Q142fs|NUP50_uc003bft.2_Frame_Shift_Del_p.Q364fs|NUP50_uc011aqo.1_Frame_Shift_Del_p.Q142fs	NM_007172	NP_009103	Q9UKX7	NUP50_HUMAN	nucleoporin 50kDa isoform b	392	RanBD1.				carbohydrate metabolic process|glucose transport|intracellular transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore|nucleoplasm	protein binding				0		Ovarian(80;0.00965)|all_neural(38;0.0244)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		CAGAAGACACAGCTTTTGGTG	0.383													---	---	---							
Unknown	0	broad.mit.edu	37	3	34317623	34317626	+	IGR	DEL	TCCT	-	-	rs75774239		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr3:34317623_34317626delTCCT								PDCD6IP (406429 upstream) : None (None downstream)																							cctccctccctcctttccttcctt	0.225													---	---	---							
Unknown	0	broad.mit.edu	37	4	49552147	49552148	+	IGR	INS	-	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:49552147_49552148insA								CWH43 (488054 upstream) : None (None downstream)																							TATTATCTATGAAAAAGGTACA	0.342													---	---	---							
FAT1	2195	broad.mit.edu	37	4	187542087	187542088	+	Frame_Shift_Ins	INS	-	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr4:187542087_187542088insA	uc003izf.2	-	10	5840_5841	c.5652_5653insT	c.(5650-5655)TATGAAfs	p.Y1884fs		NM_005245	NP_005236	Q14517	FAT1_HUMAN	FAT tumor suppressor 1 precursor	1884_1885	Extracellular (Potential).|Cadherin 17.				actin filament organization|anatomical structure morphogenesis|cell migration|cell-cell signaling|establishment or maintenance of cell polarity|homophilic cell adhesion	cell-cell junction|integral to plasma membrane|nucleus|perinuclear region of cytoplasm	calcium ion binding|protein binding			ovary(10)|central_nervous_system(1)|pancreas(1)	12						AGAGATGCTTCATATAATGGCT	0.396										HNSCC(5;0.00058)			---	---	---							
C5orf23	79614	broad.mit.edu	37	5	32789822	32789823	+	Frame_Shift_Del	DEL	GT	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:32789822_32789823delGT	uc003jhw.1	+	1	878_879	c.315_316delGT	c.(313-318)GGGTGTfs	p.G105fs		NM_024563	NP_078839			hypothetical protein LOC79614												0						CTGATTTTGGGTGTGTGTGTGT	0.421													---	---	---							
ERBB2IP	55914	broad.mit.edu	37	5	65349867	65349867	+	Frame_Shift_Del	DEL	A	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:65349867delA	uc003juk.1	+	21	3029	c.2721delA	c.(2719-2721)GGAfs	p.G907fs	ERBB2IP_uc003jui.1_Frame_Shift_Del_p.G907fs|ERBB2IP_uc003juj.1_Frame_Shift_Del_p.G907fs|ERBB2IP_uc011cqx.1_Frame_Shift_Del_p.G907fs|ERBB2IP_uc011cqy.1_Frame_Shift_Del_p.G907fs|ERBB2IP_uc011cqz.1_Intron|ERBB2IP_uc010iwx.1_Frame_Shift_Del_p.G903fs|ERBB2IP_uc003jul.1_Frame_Shift_Del_p.G903fs	NM_018695	NP_061165	Q96RT1	LAP2_HUMAN	ERBB2 interacting protein isoform 2	907					basal protein localization|cell adhesion|cell cycle|cell growth|epidermal growth factor receptor signaling pathway|establishment or maintenance of epithelial cell apical/basal polarity|integrin-mediated signaling pathway|intermediate filament cytoskeleton organization	basement membrane|cytoplasm|hemidesmosome|nucleus	ErbB-2 class receptor binding|integrin binding|structural constituent of cytoskeleton			ovary(3)|lung(2)|central_nervous_system(2)	7		Lung NSC(167;9.45e-06)|Prostate(74;0.0139)|Ovarian(174;0.0547)|Breast(144;0.093)|Colorectal(97;0.234)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0767)|Lung(70;0.00191)		CTGTTGATGGAAAAAATATAG	0.378													---	---	---							
Unknown	0	broad.mit.edu	37	5	138071572	138071572	+	IGR	DEL	T	-	-	rs71756794		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:138071572delT								HSPA9 (160457 upstream) : CTNNA1 (17535 downstream)																							ccttcctttcttttttttttt	0.000													---	---	---							
FAM153B	202134	broad.mit.edu	37	5	175540969	175540989	+	In_Frame_Del	DEL	AAGCCCAAGAAGAAAACCAGG	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr5:175540969_175540989delAAGCCCAAGAAGAAAACCAGG	uc003mdk.2	+	21	1138_1158	c.1081_1101delAAGCCCAAGAAGAAAACCAGG	c.(1081-1101)AAGCCCAAGAAGAAAACCAGGdel	p.KPKKKTR361del		NM_001079529	NP_001072997	P0C7A2	F153B_HUMAN	hypothetical protein LOC202134	361_367										ovary(1)	1	all_cancers(89;0.00406)|Renal(175;0.000269)|Lung NSC(126;0.0103)|all_lung(126;0.0164)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)	Kidney(146;0.0965)		GAAAACCAGAAAGCCCAAGAAGAAAACCAGGAAGCCCAGCA	0.471													---	---	---							
HLA-DQB1	3119	broad.mit.edu	37	6	32632675	32632675	+	Frame_Shift_Del	DEL	C	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:32632675delC	uc003obw.2	-	2	361	c.279delG	c.(277-279)TGGfs	p.W93fs	HLA-DQB1_uc010juc.1_Frame_Shift_Del_p.W48fs|HLA-DQB1_uc003obv.2_Frame_Shift_Del_p.W93fs|HLA-DQB1_uc011dqd.1_Frame_Shift_Del_p.W93fs|HLA-DQB1_uc011dqe.1_Frame_Shift_Del_p.W93fs	NM_002123	NP_002114	P01920	DQB1_HUMAN	major histocompatibility complex, class II, DQ	93	Extracellular (Potential).|Beta-1.				antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|interferon-gamma-mediated signaling pathway|T cell costimulation|T cell receptor signaling pathway	endoplasmic reticulum membrane|endosome membrane|Golgi apparatus|integral to membrane|lysosomal membrane|MHC class II protein complex	MHC class II receptor activity				0					Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TCTGGCTGTTCCAGTACTCGG	0.637									Melanoma_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia|T-cell_Lymphoma_(Cutaneous)__Familial_Clustering_of|Sj_gren_syndrome				---	---	---							
ICK	22858	broad.mit.edu	37	6	52883129	52883129	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:52883129delT	uc003pbh.2	-	8	1152	c.662delA	c.(661-663)AAGfs	p.K221fs	ICK_uc003pbi.2_Frame_Shift_Del_p.K221fs|ICK_uc003pbj.2_Frame_Shift_Del_p.K221fs	NM_016513	NP_057597	Q9UPZ9	ICK_HUMAN	intestinal cell kinase	221	Protein kinase.				intracellular protein kinase cascade|multicellular organismal development	cytosol|nucleus	ATP binding|cyclin-dependent protein kinase activity|magnesium ion binding			ovary(1)|large_intestine(1)|lung(1)|kidney(1)|central_nervous_system(1)	5	Lung NSC(77;0.103)					TATCATTACCTTTTTTGGTGT	0.502													---	---	---							
Unknown	0	broad.mit.edu	37	6	85217933	85217934	+	IGR	INS	-	TATG	TATG			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:85217933_85217934insTATG								KIAA1009 (280598 upstream) : TBX18 (179147 downstream)																							TAGGGGATACATAtgtatgtgt	0.193													---	---	---							
Unknown	0	broad.mit.edu	37	6	158195269	158195270	+	IGR	INS	-	G	G	rs150472202	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr6:158195269_158195270insG								ZDHHC14 (100293 upstream) : SNX9 (49024 downstream)																							gaggtggaggagtggaggaggt	0.322													---	---	---							
OCM	654231	broad.mit.edu	37	7	5920406	5920406	+	5'Flank	DEL	T	-	-	rs10235465		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:5920406delT	uc003spe.3	+							NM_001097622	NP_001091091	P0CE72	ONCO_HUMAN	oncomodulin								calcium ion binding				0		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0978)|OV - Ovarian serous cystadenocarcinoma(56;2.11e-14)		aaaaaaaaaaTAATCTAGACA	0.229													---	---	---							
Unknown	0	broad.mit.edu	37	7	53931210	53931211	+	IGR	INS	-	T	T			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:53931210_53931211insT								POM121L12 (826593 upstream) : HPVC1 (337706 downstream)																							GTATGTTTGGATTTTTTCTCTT	0.307													---	---	---							
Unknown	0	broad.mit.edu	37	7	55659699	55659699	+	IGR	DEL	C	-	-	rs140374894		TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:55659699delC								VOPP1 (19499 upstream) : LOC442308 (53613 downstream)																							CTCAGCTGCACCCCCCCTCTT	0.587													---	---	---							
Unknown	0	broad.mit.edu	37	7	117523429	117523430	+	IGR	INS	-	A	A			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr7:117523429_117523430insA								CTTNBP2 (9868 upstream) : NAA38 (300656 downstream)																							taaaaaaaaagaaaaaaaaaaa	0.163													---	---	---							
C9orf102	375748	broad.mit.edu	37	9	98718215	98718215	+	Frame_Shift_Del	DEL	T	-	-			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:98718215delT	uc004avt.3	+	13	2288	c.1900delT	c.(1900-1902)TGTfs	p.C634fs	C9orf102_uc011lum.1_Frame_Shift_Del_p.C336fs|C9orf102_uc010mry.1_Frame_Shift_Del_p.C336fs|C9orf102_uc010mrz.2_Frame_Shift_Del_p.C445fs|C9orf102_uc004avu.2_5'UTR	NM_001010895	NP_001010895	Q5T890	RAD26_HUMAN	RAD26L hypothetical protein	634	Helicase C-terminal.				DNA repair	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding				0		Acute lymphoblastic leukemia(62;0.0559)				GATTGGACAATGTAGAGATGT	0.358													---	---	---							
Unknown	0	broad.mit.edu	37	9	102150493	102150494	+	IGR	INS	-	CTTCCTTC	CTTCCTTC			TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:102150493_102150494insCTTCCTTC								SEC61B (157593 upstream) : NR4A3 (433643 downstream)																							ATTTGCCCTGTcttccttcctt	0.050													---	---	---							
Unknown	0	broad.mit.edu	37	9	132240961	132240962	+	IGR	INS	-	AGAG	AGAG	rs141142455	by1000genomes	TCGA-BA-4075-01A-01D-1434-08	TCGA-BA-4075-10A-01D-1434-08									Somatic	Phase_I	Capture				Illumina GAIIx	5b3fec35-d127-4cb5-859b-edac003acdf3	5e8d7595-2397-40ce-8c2e-63b352605fe6	g.chr9:132240961_132240962insAGAG								C9orf106 (156079 upstream) : C9orf50 (133544 downstream)																							gaaagagagaCagggagggagt	0.010													---	---	---							
