Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
EPHA8	2046	genome.wustl.edu	37	1	22902836	22902836	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_020526.3	+1	reviewed	p.R96C	0.998	16	0%	13	30.8%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ephrin_lbd,HMMSmart_EPH_lbd,superfamily_Gal_bind_like
DCDC2B	149069	genome.wustl.edu	37	1	32681132	32681132	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_001099434.1	+1	validated	p.E314	0.934	57	0%	48	39.6%	1	0%	-	-	-	NULL
SLC6A17	388662	genome.wustl.edu	37	1	110740769	110740769	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_001010898.2	+1	validated	p.T629	0.227	65	0%	29	34.5%	0	-	-	-	-	HMMPfam_SNF
SPRR2G	6706	genome.wustl.edu	37	1	153122469	153122469	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_001014291.3	-1	validated	p.P40T	0.000	146	0%	162	64.2%	0	-	unknown(0)	-	-	NULL
MNDA	4332	genome.wustl.edu	37	1	158815481	158815481	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_002432.1	+1	reviewed	p.Y225	0.017	90	0%	139	15.1%	9	0%	-	-	-	HMMPfam_HIN
ASTN1	460	genome.wustl.edu	37	1	176838004	176838004	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_004319.1	-1	validated	p.R1208Q	1.000	185	0%	199	70.4%	3	66.6%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	NULL
CR1	1378	genome.wustl.edu	37	1	207760830	207760830	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_000651.4	+1	reviewed	p.R1877H	0.001	224	0%	237	23.2%	1	100%	benign(0.001)	tolerated(0.33)	neutral(0.024)	HMMPfam_Sushi,HMMSmart_SM00032,superfamily_Complement control module/SCR domain
KCNK3	3777	genome.wustl.edu	37	2	26950552	26950552	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_002246.2	+1	reviewed	p.P101T	1.000	32	0%	22	36.4%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Ion_trans_2,superfamily_Voltage-gated potassium channels
SOS1	6654	genome.wustl.edu	37	2	39249914	39249914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_005633.3	-1	reviewed	p.R552K	1.000	243	0%	154	56.5%	8	75%	probably_damaging(0.983)	tolerated(0.09)	deleterious(0.726)	NULL
ENSG00000228763	0	genome.wustl.edu	37	2	109294892	109294893	+	Splice_Site	INS	-	-	A	rs113803996	byCluster;by1000genomes	TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000411710	-1	known	NULL	0.001:0.000	-	-	-	-	-	-	-	-	-	-
POLR1B	84172	genome.wustl.edu	37	2	113310279	113310279	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_019014.4	+1	validated	p.L348	1.000	151	0%	131	25.2%	4	0%	-	-	-	HMMPfam_RNA_pol_Rpb2_2,superfamily_beta and beta-prime subunits of DNA dependent RNA-polymerase
FAM168B	130074	genome.wustl.edu	37	2	131813155	131813155	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_001009993.2	-1	validated	p.A90S	1.000	64	0%	29	31%	18	44.4%	probably_damaging(0.965)	deleterious(0.05)	deleterious(0.752)	NULL
NEB	4703	genome.wustl.edu	37	2	152409911	152409911	+	Splice_Site	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_004543.4	-1	reviewed	e98+1	1.000	163	0%	138	25.4%	0	-	-	-	-	-
HOXD10	3236	genome.wustl.edu	37	2	176982023	176982023	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_002148.3	+1	reviewed	p.L154	1.000	54	0%	58	62.1%	3	0%	-	-	-	NULL
WDR6	11180	genome.wustl.edu	37	3	49049335	49049335	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_018031.3	+1	reviewed	p.R153L	0.855	117	0%	75	22.7%	43	23.2%	possibly_damaging(0.906)	deleterious(0)	deleterious(0.804)	superfamily_WD40 repeat-like
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_006218.2	+1	reviewed	p.E545K	1.000	111	0%	92	60.9%	3	33.3%	probably_damaging(0.999)	deleterious(0)	deleterious(0.935)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
FRYL	285527	genome.wustl.edu	37	4	48514651	48514651	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_015030.1	-1	validated	p.P2664	0.003	89	0%	41	43.9%	4	75%	-	-	-	superfamily_ARM repeat
PRKG2	5593	genome.wustl.edu	37	4	82088325	82088325	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_006259.1	-1	provisional	p.C301Y	1.000	85	0%	34	32.4%	0	-	benign(0.025)	deleterious(0)	neutral(0.446)	HMMSmart_cNMP,superfamily_cNMP_binding
METTL14	57721	genome.wustl.edu	37	4	119626803	119626803	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_020961.2	+1	provisional	p.R298P	1.000	189	0%	117	48.7%	8	62.5%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_MT-A70
PCDHB16	57717	genome.wustl.edu	37	5	140564414	140564414	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_020957.1	+1	reviewed	p.E760D	0.000	140	0%	110	35.5%	5	0%	benign(0)	tolerated(0.46)	neutral(0.012)	NULL
RUNX2	860	genome.wustl.edu	37	6	45514918	45514919	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_001024630.3	+1	reviewed	p.L550fs	1.000:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_RunxI
RIMS1	22999	genome.wustl.edu	37	6	72678766	72678766	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_014989.4	+1	reviewed	p.P82L	1.000	136	0%	53	32.1%	0	-	possibly_damaging(0.527)	tolerated(0.78)	neutral(0.179)	superfamily_FYVE/PHD zinc finger
SGK1	6446	genome.wustl.edu	37	6	134495754	134495754	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000367857	-1	known	p.R6L	0.000	121	0%	64	35.9%	0	-	benign(0)	deleterious(0)	neutral(0.445)	NULL
SASH1	23328	genome.wustl.edu	37	6	148795300	148795300	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_015278.3	+1	validated	p.I190S	1.000	183	0%	151	50.3%	1	100%	possibly_damaging(0.557)	deleterious(0)	deleterious(0.635)	NULL
TMEM242	729515	genome.wustl.edu	37	6	157743748	157743748	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_018452.4	-1	validated	p.W60R	0.864	224	0%	150	37.3%	15	40%	probably_damaging(0.986)	tolerated(0.29)	neutral(0.464)	HMMPfam_DUF1358
TBRG4	9238	genome.wustl.edu	37	7	45141172	45141172	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_004749.2	-1	validated	p.V537I	0.040	55	0%	27	37%	83	18%	benign(0.123)	tolerated(0.82)	neutral(0.011)	NULL
SEMA3D	223117	genome.wustl.edu	37	7	84694809	84694809	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_152754.2	-1	validated	p.R217*	0.999	117	0%	97	29.9%	3	0%	-	-	-	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema
ABCB1	5243	genome.wustl.edu	37	7	87179322	87179322	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_000927.3	-1	reviewed	p.R467W	1.000	153	0.7%	215	43.3%	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ABC_tran,HMMSmart_SM00382,superfamily_P-loop containing nucleoside triphosphate hydrolases
ADAM22	53616	genome.wustl.edu	37	7	87780312	87780312	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_021723.2	+1	reviewed	p.H528R	1.000	280	0%	254	45.3%	0	-	probably_damaging(1)	deleterious(0.04)	deleterious(0.849)	HMMPfam_Disintegrin,HMMSmart_SM00050,superfamily_Blood coagulation inhibitor (disintegrin)
RBM33	155435	genome.wustl.edu	37	7	155532606	155532606	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000392761	+1	known	p.R417H	0.077	34	0%	20	30%	3	0%	-	-	-	NULL
ANK1	286	genome.wustl.edu	37	8	41519305	41519305	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000415018	-1	known	p.P1878R	0.000	46	0%	27	37%	0	-	-	-	-	NULL
ZNF572	137209	genome.wustl.edu	37	8	125989971	125989971	+	Silent	SNP	G	G	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_152412.2	+1	validated	p.R487	0.236	80	0%	47	46.8%	0	-	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PALM2-AKAP2	445815	genome.wustl.edu	37	9	112686028	112686028	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_007203.4	+1	validated	p.I91L	1.000	77	0%	59	32.2%	0	-	benign(0.273)	tolerated(0.13)	neutral(0.282)	NULL
EGR2	1959	genome.wustl.edu	37	10	64573185	64573185	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_000399.3	-1	reviewed	p.R405*	1.000	131	0%	94	23.4%	4	75%	-	-	-	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers
PTEN	5728	genome.wustl.edu	37	10	89717672	89717672	+	Nonsense_Mutation	SNP	C	C	T	rs121909219	byCluster	TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000371953	+1	known	p.R233*	0.984	118	0%	96	88.5%	18	72.2%	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
SCD	6319	genome.wustl.edu	37	10	102116383	102116383	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_005063.4	+1	validated	p.V248I	0.828	128	0%	104	21.2%	16	43.7%	benign(0.012)	tolerated(0.37)	neutral(0.019)	HMMPfam_FA_desaturase
FGFR2	2263	genome.wustl.edu	37	10	123279677	123279677	+	Missense_Mutation	SNP	G	G	C	rs79184941	byCluster	TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_022970.3	-1	reviewed	p.S252W	1.000	79	0%	45	33.3%	21	28.5%	probably_damaging(0.963)	tolerated(0.07)	deleterious(0.725)	NULL
FAM175B	23172	genome.wustl.edu	37	10	126523239	126523239	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_032182.3	+1	validated	p.Q316R	1.000	96	0%	76	32.9%	5	0%	benign(0.059)	deleterious(0.02)	neutral(0.387)	NULL
RAG2	5897	genome.wustl.edu	37	11	36614556	36614556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_000536.3	-1	reviewed	p.A388E	1.000	268	0%	218	39%	0	-	probably_damaging(0.994)	deleterious(0)	deleterious(0.897)	HMMPfam_RAG2
CDON	50937	genome.wustl.edu	37	11	125873964	125873964	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_016952.4	-1	validated	p.D620G	0.996	55	0%	37	37.8%	1	100%	probably_damaging(1)	tolerated(0.08)	deleterious(0.800)	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III
WSCD2	9671	genome.wustl.edu	37	12	108589647	108589647	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_014653.2	+1	validated	p.R13H	1.000	20	0.000	7	0.571	0	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
C13orf33	84935	genome.wustl.edu	37	13	31495824	31495824	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_032849.3	+1	validated	p.L210F	1.000	210	0%	146	40.4%	0	-	probably_damaging(0.991)	tolerated(0.33)	neutral(0.468)	NULL
RDH11	51109	genome.wustl.edu	37	14	68159684	68159684	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_016026.3	-1	validated	p.G54R	1.000	133	0%	82	40.2%	34	47%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains
GPR68	8111	genome.wustl.edu	37	14	91700874	91700874	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_003485.3	-1	validated	p.E184V	1.000	27	0%	12	75%	2	0%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_7tm_1,superfamily_SSF81321
ZNF609	23060	genome.wustl.edu	37	15	64792056	64792056	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_015042.1	+1	provisional	p.A146	0.777	99	0%	59	33.9%	2	50%	-	-	-	NULL
ANKRD11	29123	genome.wustl.edu	37	16	89349633	89349633	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_013275.4	-1	validated	p.K1106R	1.000	167	0%	143	41.3%	17	47%	benign(0.001)	tolerated(1)	-	superfamily_Ankyrin repeat
SLC47A2	146802	genome.wustl.edu	37	17	19582183	19582183	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_152908.3	-1	validated	p.T542M	0.000	42	0%	24	41.7%	0	-	benign(0.02)	tolerated(0.14)	neutral(0.251)	NULL
RNF213	57674	genome.wustl.edu	37	17	78321264	78321264	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000508628	+1	known	p.L3043	0.002	51	0%	30	30%	1	100%	-	-	-	NULL
ENSG00000005206	0	genome.wustl.edu	37	19	2344611	2344611	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000452401	+1	known	p.P412S	1.000	75	0%	41	36.6%	44	45.4%	probably_damaging(1)	tolerated(0.16)	deleterious(0.559)	HMMSmart_SM00730,HMMPfam_Peptidase_A22B
PIAS4	51588	genome.wustl.edu	37	19	4013087	4013087	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_015897.2	+1	provisional	p.R65H	1.000	24	0%	15	60%	20	50%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
STXBP2	6813	genome.wustl.edu	37	19	7705060	7705063	+	Frame_Shift_Del	DEL	GTCT	GTCT	-	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	GTCT	GTCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000320400	+1	known	p.L87fs	0.000:0.001:0.000:0.000	-	-	-	-	-	-	-	-	-	NULL
LOC100132973	100132973	genome.wustl.edu	37	19	9293164	9293165	+	Splice_Site	INS	-	-	TTTATTTATTTATTTA	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	XM_001726567.1	-1	model	e2-1	1.000:1.000	-	-	-	-	-	-	-	-	-	-
LOC100288184	100288184	genome.wustl.edu	37	19	19153562	19153562	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	XM_002343621.1	-1	model	p.F20	0.001	73	0%	43	23.3%	19	42.1%	benign(0.036)	-	-	NULL
AXL	558	genome.wustl.edu	37	19	41736912	41736912	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_021913.3	+1	reviewed	p.N209	0.961	70	0%	36	36.1%	2	0%	-	-	-	HMMSmart_SM00409,superfamily_Immunoglobulin
FAM217B	63939	genome.wustl.edu	37	20	58519160	58519160	+	Silent	SNP	G	G	A	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_022106.1	+1	predicted	p.P54	0.000	76	0%	48	43.8%	2	50%	-	-	-	NULL
EP300	2033	genome.wustl.edu	37	22	41513277	41513277	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_001429.3	+1	reviewed	p.I61fs	1.000	-	-	-	-	-	-	-	-	-	NULL
FBLN1	2192	genome.wustl.edu	37	22	45914634	45914634	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_006486.2	+1	reviewed	p.S51W	0.990	42	0%	21	47.6%	216	50.9%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_ANATO,HMMSmart_SM00104,PatternScan_ANAPHYLATOXIN_1
ENSG00000211459	0	genome.wustl.edu	37	MT	655	655	+	RNA	SNP	T	T	C	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	ENST00000389680	+1	known	NULL	NULL	826	0.1%	503	37.6%	61	31.1%	-	-	-	-
PRPS2	5634	genome.wustl.edu	37	X	12828230	12828231	+	Frame_Shift_Ins	INS	-	-	ATCATTG	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_001039091.2	+1	reviewed	p.V170fs	0.940:1.000	-	-	-	-	-	-	-	-	-	HMMPfam_Pribosyltran,superfamily_SSF53271
ATRX	546	genome.wustl.edu	37	X	76937521	76937521	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_000489.3	-1	reviewed	p.S1076C	1.000	83	0%	84	44%	6	0%	possibly_damaging(0.819)	deleterious(0.03)	deleterious(0.674)	NULL
PCDH11X	27328	genome.wustl.edu	37	X	91132565	91132565	+	Silent	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_032968.3	+1	reviewed	p.G442	0.995	151	0%	103	37.9%	0	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
THOC2	57187	genome.wustl.edu	37	X	122866806	122866806	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_001081550.1	-1	validated	p.E23K	1.000	107	0%	85	43.5%	2	0%	possibly_damaging(0.952)	deleterious(0.01)	deleterious(0.801)	NULL
SSR4	6748	genome.wustl.edu	37	X	153062922	153062922	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-BG-A0RY-01A-11D-A10B-09	TCGA-BG-A0RY-10A-02D-A10B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	83781d03-2b08-49fd-87f0-4a765f8bb24a	4205f13b-98e8-43ca-aeb4-5e123723063f	NM_006280.1	+1	reviewed	p.L66V	1.000	54	0%	23	52.2%	1311	97.1%	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_TRAP-delta
