Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACACB	32	genome.wustl.edu	37	12	109617027	109617027	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	12	109617027	109617027	G	T	SNP	ACACB	NM_001093.3	human	genbank	58_37c	+1	reviewed	missense	c.1572	p.Q524H	1.000	HMMPfam_CPSase_L_D2,superfamily_Glutathione synthetase ATP-binding domain-like	HMMPfam_Carboxyl_trans,HMMPfam_Biotin_lipoyl,HMMPfam_CPSase_L_D2,PatternScan_CPSASE_1,PatternScan_CPSASE_2,HMMPfam_CPSase_L_chain,HMMPfam_Biotin_carb_C,superfamily_Single hybrid motif,superfamily_Rudiment single hybrid motif,HMMPfam_ACC_central,superfamily_PreATP-grasp domain,superfamily_ClpP/crotonase,superfamily_Glutathione synthetase ATP-binding domain-like	-	no_errors
CAMTA2	23125	genome.wustl.edu	37	17	4883016	4883016	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	17	4883016	4883016	G	C	SNP	CAMTA2	NM_015099.3	human	genbank	58_37c	-1	validated	missense	c.1601	p.T534S	0.266	HMMPfam_TIG,superfamily_E set domains	HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CDH1	999	genome.wustl.edu	37	16	68862178	68862179	+	Frame_Shift_Ins	INS	-	-	AT	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	16	68862178	68862179	-	AT	INS	CDH1	NM_004360.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.2266_2267	p.E757fs	1.000:1.000	HMMPfam_Cadherin_C	HMMPfam_Cadherin_C,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_pro,superfamily_Cadherin-like	-	no_errors
CNBD1	168975	genome.wustl.edu	37	8	88365988	88365988	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	8	88365988	88365988	C	T	SNP	CNBD1	NM_173538.2	human	genbank	58_37c	+1	provisional	missense	c.1277	p.A426V	0.872	HMMPfam_cNMP_binding,superfamily_cNMP_binding	HMMPfam_cNMP_binding,PatternScan_CNMP_BINDING_1,PatternScan_CNMP_BINDING_2,superfamily_cNMP_binding	-	no_errors
ESPL1	9700	genome.wustl.edu	37	12	53663662	53663662	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	12	53663662	53663662	C	A	SNP	ESPL1	NM_012291.4	human	genbank	58_37c	+1	validated	silent	c.936	p.A312	0.012	NULL	HMMPfam_Peptidase_C50	-	no_errors
INTS4	92105	genome.wustl.edu	37	11	77702264	77702265	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	11	77702264	77702265	-	T	INS	INTS4	NM_033547.3	human	genbank	58_37c	-1	validated	frame_shift_ins	c.136_135	p.A45fs	1.000:0.998	NULL	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
KLHL6	89857	genome.wustl.edu	37	3	183209733	183209733	+	Silent	SNP	G	G	A	rs144049008	byFrequency	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	3	183209733	183209733	G	A	SNP	KLHL6	NM_130446.2	human	genbank	58_37c	-1	validated	silent	c.1848	p.P616	0.005	NULL	HMMSmart_BTB,HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
LMO4	8543	genome.wustl.edu	37	1	87805767	87805767	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	1	87805767	87805767	C	T	SNP	LMO4	NM_006769.3	human	genbank	58_37c	+1	reviewed	missense	c.371	p.P124L	1.000	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
LOC100131360	0	genome.wustl.edu	37	3	195723586	195723586	+	RNA	SNP	G	G	A	rs56022806	byCluster;byFrequency;by1000genomes	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	3	195723586	195723586	G	A	SNP	LOC100131360	XR_037733.2	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.967	-	-	-	pseudogene
MCART6	401612	genome.wustl.edu	37	X	103349492	103349492	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	X	103349492	103349492	C	T	SNP	MCART6	NM_001012755.3	human	genbank	58_37c	-1	validated	missense	c.449	p.R150H	1.000	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	superfamily_Mitochondrial carrier,HMMPfam_Mito_carr	-	no_errors
PCDHB3	56132	genome.wustl.edu	37	5	140482342	140482342	+	Silent	SNP	T	T	C	rs17844403	byCluster;byFrequency	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	5	140482342	140482342	T	C	SNP	PCDHB3	NM_018937.2	human	genbank	58_37c	+1	reviewed	silent	c.2109	p.F703	0.000	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PTEN	5728	genome.wustl.edu	37	10	89685316	89685316	+	Splice_Site	DEL	T	T	-	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	10	89685316	89685316	T	-	DEL	PTEN	ENST00000371953	human	ensembl	58_37c	+1	known	splice_site_del	c.209+2	e3+2	1.000	-	-	-	no_errors
RBM5	10181	genome.wustl.edu	37	3	50151449	50151449	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-BH-A0E9-01B-11D-A10Y-09	TCGA-BH-A0E9-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	48ccd30d-0c71-4117-8ccb-013986f14e95	244a360a-b8b8-4a85-b86d-8138b3d6e397	3	50151449	50151449	T	-	DEL	RBM5	NM_005778.1	human	genbank	58_37c	+1	provisional	frame_shift_del	c.1684	p.Q563fs	1.000	NULL	HMMPfam_G-patch,HMMSmart_SM00443,HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,superfamily_RNA-binding domain RBD	-	no_errors
