Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABLIM2	84448	genome.wustl.edu	37	4	8098975	8098975	+	Silent	SNP	G	A	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	4e96fa4b-0b08-4a59-9c5b-39c2390bbf4f	4	8098975	8098975	G	A	SNP	ABLIM2	NM_001130083.1	human	genbank	58_37c	-1	validated	silent	c.189	p.F63	1.000	HMMPfam_LIM,HMMSmart_SM00132,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,HMMPfam_VHP,HMMSmart_SM00153,superfamily_VHP Villin headpiece domain,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
AHDC1	27245	genome.wustl.edu	37	1	27878126	27878126	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	27878126	27878126	G	A	SNP	AHDC1	NM_001029882.2	human	genbank	58_37c	-1	validated	silent	c.501	p.F167	1.000	NULL	HMMPfam_AT_hook,HMMSmart_AT_hook	-	no_errors
AHNAK2	113146	genome.wustl.edu	37	14	105420827	105420827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	105420827	105420827	G	A	SNP	AHNAK2	NM_138420.2	human	genbank	58_37c	-1	validated	missense	c.961	p.R321W	0.000	NULL	HMMPfam_Involucrin,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
AMBRA1	55626	genome.wustl.edu	37	11	46567261	46567261	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	11	46567261	46567261	C	T	SNP	AMBRA1	NM_017749.2	human	genbank	58_37c	-1	validated	silent	c.444	p.T148	1.000	HMMSmart_WD40,superfamily_WD40_like	HMMSmart_WD40,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
ANKRD32	84250	genome.wustl.edu	37	5	94030568	94030568	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	94030568	94030568	G	A	SNP	ANKRD32	NM_032290.3	human	genbank	58_37c	+1	validated	missense	c.2728	p.G910R	0.980	superfamily_ANK	HMMPfam_BRCT,HMMSmart_BRCT,superfamily_BRCT,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
AQP7	364	genome.wustl.edu	37	9	33386975	33386975	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	9	33386975	33386975	C	T	SNP	AQP7	NM_001170.1	human	genbank	58_37c	-1	reviewed	missense	c.260	p.R87H	0.847	HMMPfam_MIP,superfamily_MIP	HMMPfam_MIP,PatternScan_MIP,superfamily_MIP	-	no_errors
ATG4A	115201	genome.wustl.edu	37	X	107381041	107381041	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	107381041	107381041	G	A	SNP	ATG4A	NM_052936.2	human	genbank	58_37c	+1	reviewed	missense	c.555	p.M185I	1.000	HMMPfam_Peptidase_C54	HMMPfam_Peptidase_C54	-	no_errors
ATN1	1822	genome.wustl.edu	37	12	7045892	7045906	+	In_Frame_Del	DEL	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG	-	rs66620283	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	CAGCAGCAGCAGCAG	CAGCAGCAGCAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	4e96fa4b-0b08-4a59-9c5b-39c2390bbf4f	12	7045892	7045906	CAGCAGCAGCAGCAG	-	DEL	ATN1	NM_001007026.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1462_1476	p.QQQQQ491in_frame_del	0.834:0.709:0.730:0.772:0.719:0.700:0.962:0.955:0.948:0.969:0.915:0.004:0.157:0.124:0.121	HMMPfam_Atrophin-1	HMMPfam_Atrophin-1	-	no_errors
ATP2C1	27032	genome.wustl.edu	37	3	130714935	130714935	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	130714935	130714935	C	T	SNP	ATP2C1	ENST00000504612	human	ensembl	58_37c	+1	known	missense	c.1967	p.S656L	1.000	superfamily_Calcium ATPase transmembrane domain M	HMMPfam_Cation_ATPase_N,HMMPfam_Hydrolase,HMMPfam_Cation_ATPase_C,HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N,superfamily_Calcium ATPase transmembrane domain M	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
BRWD3	254065	genome.wustl.edu	37	X	79980464	79980464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	79980464	79980464	G	A	SNP	BRWD3	NM_153252.4	human	genbank	58_37c	-1	reviewed	missense	c.1489	p.R497W	0.985	HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_YVTN repeat-like/Quinoprotein amine dehydrogenase,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
C10orf120	399814	genome.wustl.edu	37	10	124457606	124457606	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	124457606	124457606	G	A	SNP	C10orf120	NM_001010912.1	human	genbank	58_37c	-1	predicted	silent	c.651	p.T217	0.000	NULL	NULL	-	no_errors
C17orf53	78995	genome.wustl.edu	37	17	42230004	42230004	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	42230004	42230004	G	C	SNP	C17orf53	NM_024032.3	human	genbank	58_37c	+1	validated	splice_site	c.1309-1	e5-1	0.875	-	-	-	no_errors
C1orf96	126731	genome.wustl.edu	37	1	229462694	229462694	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	229462694	229462694	C	G	SNP	C1orf96	NM_145257.3	human	genbank	58_37c	-1	validated	missense	c.427	p.D143H	0.005	NULL	NULL	-	no_errors
C20orf12	55184	genome.wustl.edu	37	20	18374937	18374937	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	20	18374937	18374937	C	T	SNP	C20orf12	NM_001099407.1	human	genbank	58_37c	-1	validated	missense	c.1669	p.E557K	0.140	NULL	HMMSmart_ZnF_RBZ,HMMPfam_Ank,HMMSmart_ANK,superfamily_ANK	-	no_errors
C2orf89	129293	genome.wustl.edu	37	2	85051114	85051114	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	85051114	85051114	G	A	SNP	C2orf89	NM_001080824.1	human	genbank	58_37c	-1	predicted	missense	c.1150	p.R384W	0.001	NULL	NULL	-	no_errors
C6orf124	653483	genome.wustl.edu	37	6	168226924	168226924	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	4e96fa4b-0b08-4a59-9c5b-39c2390bbf4f	6	168226924	168226924	T	C	SNP	C6orf124	ENST00000357510	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-168226924	NULL	0.002	-	-	-	no_coding_region
CAMTA1	23261	genome.wustl.edu	37	1	7723467	7723467	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	7723467	7723467	C	G	SNP	CAMTA1	NM_015215.1	human	genbank	58_37c	+1	validated	missense	c.860	p.S287W	1.000	NULL	HMMPfam_IQ,HMMPfam_Ank,superfamily_Ankyrin repeat,HMMPfam_TIG,HMMPfam_CG-1,superfamily_E set domains,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
CASC4	113201	genome.wustl.edu	37	15	44581304	44581304	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	15	44581304	44581304	T	C	SNP	CASC4	NM_138423.2	human	genbank	58_37c	+1	reviewed	missense	c.77	p.V26A	0.988	NULL	NULL	-	no_errors
CCDC62	84660	genome.wustl.edu	37	12	123285673	123285673	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	123285673	123285673	G	C	SNP	CCDC62	NM_201435.3	human	genbank	58_37c	+1	validated	missense	c.980	p.R327T	1.000	NULL	NULL	-	no_errors
CCDC62	84660	genome.wustl.edu	37	12	123285827	123285827	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	123285827	123285827	G	C	SNP	CCDC62	NM_201435.3	human	genbank	58_37c	+1	validated	missense	c.1134	p.E378D	0.351	NULL	NULL	-	no_errors
CCDC63	160762	genome.wustl.edu	37	12	111319049	111319049	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	111319049	111319049	G	A	SNP	CCDC63	NM_152591.1	human	genbank	58_37c	+1	provisional	missense	c.802	p.V268I	0.201	NULL	NULL	-	no_errors
COL17A1	1308	genome.wustl.edu	37	10	105836073	105836073	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	105836073	105836073	C	T	SNP	COL17A1	NM_000494.3	human	genbank	58_37c	-1	reviewed	missense	c.317	p.R106H	1.000	NULL	HMMPfam_Collagen	-	no_errors
COL3A1	1281	genome.wustl.edu	37	2	189872623	189872623	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	189872623	189872623	C	T	SNP	COL3A1	NM_000090.3	human	genbank	58_37c	+1	reviewed	nonsense	c.3376	p.Q1126*	1.000	HMMPfam_Collagen	HMMPfam_COLFI,HMMSmart_SM00038,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_Collagen	-	no_errors
CSTF2T	23283	genome.wustl.edu	37	10	53457893	53457893	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	53457893	53457893	C	T	SNP	CSTF2T	NM_015235.2	human	genbank	58_37c	-1	validated	missense	c.1417	p.G473S	0.242	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
ECEL1	9427	genome.wustl.edu	37	2	233347143	233347143	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	233347143	233347143	T	A	SNP	ECEL1	NM_004826.2	human	genbank	58_37c	-1	validated	missense	c.1781	p.D594V	1.000	"HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"	"HMMPfam_Peptidase_M13_N,HMMPfam_Peptidase_M13,superfamily_Metalloproteases (""zincins"") catalytic domain"	-	no_errors
EIF3K	27335	genome.wustl.edu	37	19	39110987	39110987	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	19	39110987	39110987	G	C	SNP	EIF3K	NM_013234.2	human	genbank	58_37c	+1	validated	missense	c.70	p.E24Q	1.000	HMMPfam_SAC3_GANP,superfamily_ARM repeat	"HMMPfam_SAC3_GANP,superfamily_ARM repeat,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
ENSG00000244767	0	genome.wustl.edu	37	11	58343472	58343472	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	11	58343472	58343472	G	A	SNP	LPXN	NM_001143995.1	human	genbank	58_37c	-1	reviewed	intronic	c.28+2020	e1+2020	0.000	-	-	-	no_errors
ENSG00000245698	0	genome.wustl.edu	37	3	112252853	112252853	+	RNA	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	112252853	112252853	C	G	SNP	ATG3	ENST00000402314	human	ensembl	58_37c	-1	known	3_prime_untranslated_region	c.*190	NULL	0.011	-	-	-	no_errors
ENSG00000246132	0	genome.wustl.edu	37	17	47688403	47688403	+	RNA	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	47688403	47688403	C	T	SNP	SPOP	NM_001007226.1	human	genbank	58_37c	-1	reviewed	intronic	c.658+239	e5+239	0.000	-	-	-	no_errors
ENSG00000247972	0	genome.wustl.edu	37	10	43882057	43882057	+	RNA	SNP	T	T	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	43882057	43882057	T	C	SNP	HNRNPF	NM_001098204.1	human	genbank	58_37c	-1	reviewed	3_prime_untranslated_region	c.*28	NULL	1.000	-	-	-	no_errors
EWSR1	2130	genome.wustl.edu	37	22	29693913	29693913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	22	29693913	29693913	G	A	SNP	EWSR1	NM_005243.3	human	genbank	58_37c	+1	reviewed	missense	c.1391	p.R464K	1.000	superfamily_RNA-binding domain RBD	HMMPfam_RRM_1,HMMSmart_SM00360,HMMPfam_zf-RanBP,HMMSmart_SM00547,PatternScan_ZF_RANBP2_1,HMMPfam_SVS_QK,superfamily_RNA-binding domain RBD,superfamily_Znf265 first zinc-finger domain	-	no_errors
FAT4	79633	genome.wustl.edu	37	4	126337775	126337775	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	4	126337775	126337775	C	G	SNP	FAT4	NM_024582.4	human	genbank	58_37c	+1	validated	nonsense	c.7016	p.S2339*	0.998	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMSmart_SM00179,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,superfamily_Cadherin-like,PatternScan_EGF_CA,superfamily_EGF/Laminin	-	no_errors
FMN2	56776	genome.wustl.edu	37	1	240255687	240255687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	240255687	240255687	C	T	SNP	FMN2	NM_020066.4	human	genbank	58_37c	+1	validated	missense	c.278	p.S93F	1.000	NULL	HMMSmart_FH2,HMMPfam_Drf_FH1,HMMPfam_FH2,superfamily_FH2_actin_bd	-	no_errors
FSIP2	285135	genome.wustl.edu	37	2	186671695	186671695	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	186671695	186671695	G	A	SNP	FSIP2	ENST00000424728	human	ensembl	58_37c	+1	known	missense	c.17662	p.D5888N	0.004	NULL	NULL	-	no_errors
GJA8	2703	genome.wustl.edu	37	1	147381246	147381246	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	147381246	147381246	G	A	SNP	GJA8	NM_005267.4	human	genbank	58_37c	+1	reviewed	silent	c.1164	p.S388	0.000	NULL	HMMPfam_Connexin50,HMMPfam_Connexin,HMMSmart_CNX,PatternScan_CONNEXINS_1,PatternScan_CONNEXINS_2,HMMPfam_Connexin_CCC	-	no_errors
GNL3	26354	genome.wustl.edu	37	3	52724624	52724624	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	52724624	52724624	G	A	SNP	GNL3	NM_014366.4	human	genbank	58_37c	+1	validated	silent	c.558	p.E186	0.999	superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_MMR_HSR1,HMMPfam_GN3L_Grn1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
GRPR	2925	genome.wustl.edu	37	X	16142101	16142101	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	16142101	16142101	C	G	SNP	GRPR	NM_005314.2	human	genbank	58_37c	+1	reviewed	missense	c.25	p.L9V	0.030	superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
GSTA1	2938	genome.wustl.edu	37	6	52661025	52661025	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	52661025	52661025	G	A	SNP	GSTA1	NM_145740.3	human	genbank	58_37c	-1	reviewed	missense	c.227	p.A76V	0.984	HMMPfam_GST_N,superfamily_Thioredoxin-like	HMMPfam_GST_N,HMMPfam_GST_C,superfamily_Glutathione S-transferase (GST) C-terminal domain,superfamily_Thioredoxin-like	-	no_errors
HEATR7A	0	genome.wustl.edu	37	8	145246717	145246717	+	Missense_Mutation	SNP	G	G	A	rs189264844	by1000genomes	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	145246717	145246717	G	A	SNP	HEATR7A	NM_032450.2	human	genbank	58_37c	+1	provisional	missense	c.814	p.A272T	0.002	superfamily_ARM repeat	HMMPfam_HEAT,superfamily_ARM repeat	-	no_errors
HIST1H3B	8358	genome.wustl.edu	37	6	26031883	26031884	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	26031883	26031884	CT	-	DEL	HIST1H3B	NM_003537.3	human	genbank	58_37c	-1	reviewed	frame_shift_del	c.406_405	p.R135fs	1.000:0.999	HMMSmart_SM00428,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,PatternScan_HISTONE_H3_2,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
HSP90AB4P	664618	genome.wustl.edu	37	15	58983795	58983795	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	15	58983795	58983795	G	T	SNP	HSP90AB4P	ENST00000380522	human	ensembl	58_37c	-1	known	missense	c.1025	p.S342Y	1.000	superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90	HMMPfam_HATPase_c,HMMSmart_HATPase_c,superfamily_ATP_bd_ATPase,superfamily_Ribosomal_S5_D2-typ_fold,HMMPfam_HSP90,superfamily_SSF110942	-	no_errors
HTR3E	285242	genome.wustl.edu	37	3	183823927	183823927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	183823927	183823927	G	A	SNP	HTR3E	NM_182589.2	human	genbank	58_37c	+1	reviewed	missense	c.982	p.A328T	0.998	superfamily_Neu_channel_TM	HMMPfam_Neur_chan_memb,superfamily_Neu_channel_TM,HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
IQCB1	9657	genome.wustl.edu	37	3	121527844	121527844	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	121527844	121527844	C	G	SNP	IQCB1	NM_001023570.2	human	genbank	58_37c	-1	reviewed	missense	c.406	p.D136H	1.000	NULL	HMMPfam_IQ,HMMSmart_SM00015,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IRS4	8471	genome.wustl.edu	37	X	107976114	107976114	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	107976114	107976114	C	G	SNP	IRS4	NM_003604.2	human	genbank	58_37c	-1	reviewed	missense	c.3461	p.G1154A	0.101	NULL	HMMPfam_PH,HMMSmart_PH,HMMPfam_IRS,HMMSmart_PTBI,superfamily_SSF50729	-	no_errors
ITGA1	3672	genome.wustl.edu	37	5	52216230	52216230	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	52216230	52216230	G	C	SNP	ITGA1	NM_181501.1	human	genbank	58_37c	+1	reviewed	missense	c.2224	p.E742Q	1.000	HMMPfam_Integrin_alpha2,superfamily_SSF69179	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
ITGAX	3687	genome.wustl.edu	37	16	31371302	31371302	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	16	31371302	31371302	G	A	SNP	ITGAX	NM_000887.3	human	genbank	58_37c	+1	reviewed	missense	c.623	p.R208H	0.000	HMMPfam_VWA,HMMSmart_VWA,superfamily_SSF53300,superfamily_SSF69318	HMMPfam_VWA,HMMSmart_VWA,HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF53300,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
ITPKB	3707	genome.wustl.edu	37	1	226924884	226924885	+	In_Frame_Ins	INS	-	-	CCA	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	226924884	226924885	-	CCA	INS	ITPKB	NM_002221.3	human	genbank	58_37c	-1	reviewed	in_frame_ins	c.276_275	p.93in_frame_insG	0.091:0.097	NULL	HMMPfam_IPK,superfamily_SAICAR synthase-like	-	no_errors
KANK4	163782	genome.wustl.edu	37	1	62738879	62738879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	62738879	62738879	C	T	SNP	KANK4	NM_181712.4	human	genbank	58_37c	-1	validated	missense	c.1897	p.V633M	0.000	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
KIAA1210	57481	genome.wustl.edu	37	X	118284464	118284464	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	X	118284464	118284464	G	A	SNP	KIAA1210	NM_020721.1	human	genbank	58_37c	-1	validated	missense	c.79	p.H27Y	0.000	NULL	NULL	-	no_errors
KIF21B	23046	genome.wustl.edu	37	1	200973964	200973964	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	200973964	200973964	G	A	SNP	KIF21B	NM_017596.2	human	genbank	58_37c	-1	provisional	missense	c.830	p.S277L	1.000	HMMPfam_Kinesin,HMMSmart_KISc,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	HMMSmart_WD40,HMMPfam_Kinesin,HMMSmart_KISc,superfamily_Prefoldin,superfamily_WD40_like,PatternScan_WD_REPEATS_1,HMMPfam_WD40,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_SSF52540	-	no_errors
KLRAQ1	129285	genome.wustl.edu	37	2	48722823	48722823	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	48722823	48722823	C	T	SNP	KLRAQ1	NM_001135629.1	human	genbank	58_37c	+1	validated	silent	c.1605	p.L535	0.001	HMMPfam_TTKRSYEDQ	HMMPfam_KLRAQ,HMMPfam_TTKRSYEDQ	-	no_errors
LAP3	51056	genome.wustl.edu	37	4	17585131	17585131	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	4	17585131	17585131	G	A	SNP	LAP3	ENST00000509583	human	ensembl	58_37c	+1	known	missense	c.268	p.G90R	1.000	NULL	HMMPfam_Peptidase_M17_N,superfamily_Macro domain-like	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
LCE2D	353141	genome.wustl.edu	37	1	152636817	152636817	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	152636817	152636817	G	A	SNP	LCE2D	NM_178430.2	human	genbank	58_37c	+1	validated	missense	c.236	p.R79H	0.000	NULL	NULL	-	no_errors
LOC256374	256374	genome.wustl.edu	37	3	138363214	138363214	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	138363214	138363214	C	T	SNP	LOC256374	XM_170597.7	human	genbank	58_37c	-1	model	missense	c.311	p.G104E	0.998	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like	HMMPfam_Pro_isomerase,superfamily_Cyclophilin-like	-	no_errors
LOC653061	653061	genome.wustl.edu	37	15	23605389	23605389	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	15	23605389	23605389	G	A	SNP	LOC653061	XM_002343324.1	human	genbank	58_37c	+1	model	missense	c.614	p.R205H	0.094	NULL	NULL	-	no_errors
MAMDC2	256691	genome.wustl.edu	37	9	72723278	72723278	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	9	72723278	72723278	G	A	SNP	MAMDC2	NM_153267.4	human	genbank	58_37c	+1	validated	silent	c.300	p.L100	1.000	HMMPfam_MAM,HMMSmart_SM00137	HMMPfam_MAM,HMMSmart_SM00137,PatternScan_MAM_1	-	no_errors
MAN1A2	10905	genome.wustl.edu	37	1	117944862	117944862	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	117944862	117944862	G	A	SNP	MAN1A2	NM_006699.3	human	genbank	58_37c	+1	validated	silent	c.357	p.L119	0.990	NULL	HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47	-	no_errors
MC4R	4160	genome.wustl.edu	37	18	58039364	58039364	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	18	58039364	58039364	C	T	SNP	MC4R	NM_005912.2	human	genbank	58_37c	-1	reviewed	silent	c.219	p.K73	1.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
MGMT	4255	genome.wustl.edu	37	10	131557478	131557478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	131557478	131557478	G	A	SNP	MGMT	NM_002412.3	human	genbank	58_37c	+1	validated	missense	c.380	p.R127K	0.812	HMMPfam_DNA_binding_1,superfamily_MethylDNA_cys_mtrans_DNA_bd	PatternScan_THIOL_PROTEASE_HIS,PatternScan_MGMT,HMMPfam_Methyltransf_1N,HMMPfam_DNA_binding_1,superfamily_MethylDNA_cys_mtrans_DNA_bd,superfamily_SSF53155	-	no_errors
MLL2	8085	genome.wustl.edu	37	12	49428419	49428419	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	12	49428419	49428419	G	A	SNP	MLL2	NM_003482.3	human	genbank	58_37c	-1	validated	silent	c.10386	p.L3462	0.998	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MTA2	9219	genome.wustl.edu	37	11	62363528	62363528	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	11	62363528	62363528	C	T	SNP	MTA2	NM_004739.2	human	genbank	58_37c	-1	reviewed	missense	c.1068	p.M356I	1.000	superfamily_SSF57716	HMMPfam_GATA,HMMSmart_ZnF_GATA,PatternScan_GATA_ZN_FINGER_1,HMMPfam_ELM2,HMMSmart_SANT,HMMPfam_BAH,HMMSmart_BAH,HMMPfam_Myb_DNA-binding,superfamily_SSF57716	-	no_errors
MYH9	4627	genome.wustl.edu	37	22	36689510	36689512	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	CTC	CTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	22	36689510	36689512	CTC	-	DEL	MYH9	NM_002473.4	human	genbank	58_37c	-1	reviewed	in_frame_del	c.3960_3958	p.E1320in_frame_del	1.000:1.000:1.000	HMMPfam_Myosin_tail_1	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_Myosin_tail_1,HMMPfam_Myosin_N,superfamily_Prefoldin,superfamily_Regulator of G-protein signaling RGS,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
MYO10	4651	genome.wustl.edu	37	5	16761623	16761623	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	16761623	16761623	C	T	SNP	MYO10	NM_012334.2	human	genbank	58_37c	-1	validated	silent	c.1689	p.K563	1.000	HMMPfam_Myosin_head,HMMSmart_MYSc,superfamily_SSF52540	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RA,HMMPfam_MyTH4,HMMSmart_MyTH4,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_PH,HMMSmart_PH,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
NRXN3	9369	genome.wustl.edu	37	14	79111725	79111725	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	79111725	79111725	C	T	SNP	NRXN3	ENST00000330071	human	ensembl	58_37c	+1	known	silent	c.303	p.N101	1.000	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	PatternScan_ASX_HYDROXYL,HMMSmart_SM00282,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,superfamily_EGF/Laminin	-	no_errors
OCEL1	79629	genome.wustl.edu	37	19	17339695	17339695	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	19	17339695	17339695	C	T	SNP	OCEL1	NM_024578.1	human	genbank	58_37c	+1	provisional	silent	c.756	p.F252	0.002	HMMPfam_Occludin_ELL	HMMPfam_Occludin_ELL	-	no_errors
ORC3L	23595	genome.wustl.edu	37	6	88313147	88313147	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	88313147	88313147	G	A	SNP	ORC3L	NM_181837.1	human	genbank	58_37c	+1	reviewed	missense	c.223	p.E75K	0.997	HMMPfam_ORC3_N	HMMPfam_ORC3_N	-	no_errors
PCDHB9	56127	genome.wustl.edu	37	5	140568869	140568869	+	Silent	SNP	G	G	T	rs613907	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-11A-11W-A100-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	4e96fa4b-0b08-4a59-9c5b-39c2390bbf4f	5	140568869	140568869	G	T	SNP	PCDHB9	NM_019119.3	human	genbank	58_37c	+1	reviewed	silent	c.1977	p.T659	0.952	NULL	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
PDK2	5164	genome.wustl.edu	37	17	48174889	48174889	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	48174889	48174889	G	A	SNP	PDK2	NM_002611.3	human	genbank	58_37c	+1	provisional	missense	c.221	p.R74Q	1.000	HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain	HMMPfam_HATPase_c,HMMSmart_SM00387,superfamily_ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase,HMMPfam_BCDHK_Adom3,superfamily_alpha-ketoacid dehydrogenase kinase N-terminal domain	-	no_errors
PELP1	27043	genome.wustl.edu	37	17	4594696	4594696	+	Silent	SNP	T	T	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	4594696	4594696	T	A	SNP	PELP1	NM_014389.2	human	genbank	58_37c	-1	validated	silent	c.291	p.A97	0.955	HMMPfam_NUC201	HMMPfam_NUC201,HMMPfam_NUC202	-	no_errors
PI4K2A	55361	genome.wustl.edu	37	10	99410715	99410715	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	99410715	99410715	C	T	SNP	PI4K2A	NM_018425.2	human	genbank	58_37c	+1	provisional	silent	c.453	p.F151	1.000	HMMPfam_PI3_PI4_kinase,superfamily_SSF56399	HMMPfam_PI3_PI4_kinase,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF56399	-	no_errors
POLN	353497	genome.wustl.edu	37	4	2172878	2172878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	4	2172878	2172878	G	A	SNP	POLN	NM_181808.2	human	genbank	58_37c	-1	validated	missense	c.1405	p.H469Y	1.000	HMMPfam_DNA_pol_A,superfamily_DNA/RNA polymerases	HMMPfam_DNA_pol_A,HMMSmart_SM00482,superfamily_Ribonuclease H-like,superfamily_DNA/RNA polymerases	-	no_errors
PROX1	5629	genome.wustl.edu	37	1	214171121	214171121	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	214171121	214171121	G	A	SNP	PROX1	NM_002763.3	human	genbank	58_37c	+1	provisional	missense	c.1243	p.V415I	1.000	HMMPfam_Prox1	HMMPfam_Prox1,superfamily_Homeodomain_like	-	no_errors
RASSF5	83593	genome.wustl.edu	37	1	206730957	206730957	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	206730957	206730957	A	-	DEL	RASSF5	NM_182665.2	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.56	p.D20fs	0.992	NULL	HMMPfam_RA,HMMSmart_RA	-	no_errors
RHCG	51458	genome.wustl.edu	37	15	90020416	90020416	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	15	90020416	90020416	A	T	SNP	RHCG	NM_016321.1	human	genbank	58_37c	-1	provisional	missense	c.1134	p.F378L	0.404	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)	HMMPfam_Ammonium_transp,superfamily_Ammonium ransporter (Pfam 00909)	-	no_errors
RHPN2	85415	genome.wustl.edu	37	19	33470935	33470935	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	19	33470935	33470935	G	A	SNP	RHPN2	NM_033103.4	human	genbank	58_37c	-1	reviewed	silent	c.2028	p.F676	1.000	NULL	HMMPfam_HR1,HMMSmart_PDZ,superfamily_PDZ,HMMPfam_BRO1,HMMSmart_Hr1,superfamily_PKN_effector	-	no_errors
RNLS	55328	genome.wustl.edu	37	10	90341439	90341439	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	10	90341439	90341439	G	A	SNP	RNLS	NM_001031709.2	human	genbank	58_37c	-1	validated	silent	c.252	p.G84	0.002	superfamily_FAD/NAD(P)-binding domain	HMMPfam_FAD_binding_3,superfamily_FAD/NAD(P)-binding domain	-	no_errors
RNPS1	10921	genome.wustl.edu	37	16	2313111	2313111	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	16	2313111	2313111	C	T	SNP	RNPS1	NM_006711.2	human	genbank	58_37c	-1	reviewed	silent	c.405	p.R135	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
SLCO2B1	11309	genome.wustl.edu	37	11	74880255	74880255	+	Silent	SNP	G	T	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	11	74880255	74880255	G	T	SNP	SLCO2B1	NM_007256.3	human	genbank	58_37c	+1	validated	silent	c.486	p.L162	0.136	HMMPfam_OATP,superfamily_MFS general substrate transporter	HMMPfam_OATP,superfamily_MFS general substrate transporter	-	no_errors
SLIT3	6586	genome.wustl.edu	37	5	168310287	168310287	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	5	168310287	168310287	G	A	SNP	SLIT3	NM_003062.2	human	genbank	58_37c	-1	validated	silent	c.468	p.I156	0.996	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	PatternScan_ASX_HYDROXYL,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00282,HMMSmart_SM00179,HMMSmart_SM00368,HMMSmart_SM00369,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like,superfamily_EGF/Laminin	-	no_errors
SNORD115-20	0	genome.wustl.edu	37	15	25451417	25451417	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	15	25451417	25451417	G	A	SNP	SNORD115-20	NR_003312.1	human	genbank	58_37c	+1	provisional	rna	NULL	NULL	0.207	-	-	-	no_errors
SNX5	27131	genome.wustl.edu	37	20	17934762	17934762	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	20	17934762	17934762	C	A	SNP	SNX5	NM_014426.2	human	genbank	58_37c	-1	reviewed	splice_site	c.268-1	e4-1	1.000	-	-	-	no_errors
SSBP3	23648	genome.wustl.edu	37	1	54704821	54704821	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	54704821	54704821	G	T	SNP	SSBP3	NM_145716.2	human	genbank	58_37c	-1	validated	missense	c.908	p.P303H	1.000	HMMPfam_SSDP	HMMSmart_SM00667,HMMPfam_SSDP	-	no_errors
STAM2	10254	genome.wustl.edu	37	2	152982824	152982824	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	2	152982824	152982824	C	T	SNP	STAM2	NM_005843.4	human	genbank	58_37c	-1	reviewed	silent	c.1095	p.V365	1.000	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_VHS,HMMPfam_UIM,HMMSmart_SM00726,superfamily_ENTH/VHS domain,HMMSmart_SM00288	-	no_errors
SYNE2	23224	genome.wustl.edu	37	14	64457239	64457239	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	64457239	64457239	C	T	SNP	SYNE2	NM_182914.2	human	genbank	58_37c	+1	reviewed	silent	c.2424	p.L808	0.094	NULL	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,superfamily_4_helix_cytokine,HMMPfam_KASH,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin	-	no_errors
TEKT3	64518	genome.wustl.edu	37	17	15234729	15234729	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	17	15234729	15234729	G	A	SNP	TEKT3	NM_031898.2	human	genbank	58_37c	-1	reviewed	silent	c.174	p.V58	0.005	NULL	HMMPfam_Tektin	-	no_errors
TFAP4	7023	genome.wustl.edu	37	16	4310234	4310234	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	16	4310234	4310234	G	A	SNP	TFAP4	NM_003223.2	human	genbank	58_37c	-1	validated	missense	c.679	p.P227S	1.000	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
TINAG	27283	genome.wustl.edu	37	6	54173424	54173424	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	54173424	54173424	C	T	SNP	TINAG	NM_014464.3	human	genbank	58_37c	+1	validated	nonsense	c.76	p.Q26*	0.004	NULL	PatternScan_THIOL_PROTEASE_ASN,HMMPfam_Peptidase_C1,HMMSmart_SM00645,HMMSmart_SM00201,PatternScan_SMB_1,superfamily_Cysteine proteinases	-	no_errors
TOX4	9878	genome.wustl.edu	37	14	21964747	21964747	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	14	21964747	21964747	G	A	SNP	TOX4	NM_014828.2	human	genbank	58_37c	+1	validated	missense	c.1849	p.V617M	0.998	NULL	HMMPfam_HMG_box,HMMSmart_HMG,superfamily_HMG-box	-	no_errors
TRYX3	136541	genome.wustl.edu	37	7	141952311	141952311	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	7	141952311	141952311	C	T	SNP	TRYX3	NM_001001317.2	human	genbank	58_37c	-1	reviewed	missense	c.557	p.G186E	1.000	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys	HMMPfam_Trypsin,HMMSmart_Tryp_SPc,superfamily_Pept_Ser_Cys,PatternScan_TRYPSIN_HIS,PatternScan_TRYPSIN_SER	-	no_errors
TUFT1	7286	genome.wustl.edu	37	1	151536442	151536442	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	151536442	151536442	G	A	SNP	TUFT1	NM_020127.2	human	genbank	58_37c	+1	validated	silent	c.300	p.K100	1.000	NULL	NULL	-	no_errors
TXN	7295	genome.wustl.edu	37	9	113006463	113006463	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	9	113006463	113006463	C	T	SNP	TXN	NM_003329.2	human	genbank	58_37c	-1	validated	missense	c.292	p.E98K	1.000	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin	superfamily_Thiordxn-like_fd,HMMPfam_Thioredoxin,PatternScan_THIOREDOXIN_1	-	no_errors
UBP1	7342	genome.wustl.edu	37	3	33434910	33434910	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	3	33434910	33434910	G	A	SNP	UBP1	NM_001128161.1	human	genbank	58_37c	-1	validated	missense	c.1427	p.S476L	1.000	NULL	HMMPfam_CP2,superfamily_SAM/Pointed domain	-	no_errors
UBR5	51366	genome.wustl.edu	37	8	103274157	103274157	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	103274157	103274157	C	T	SNP	UBR5	NM_015902.4	human	genbank	58_37c	-1	reviewed	missense	c.7828	p.E2610K	1.000	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT	HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_PABP,HMMSmart_PolyA,superfamily_PABP_HYD,HMMPfam_zf-UBR,HMMSmart_ZnF_UBR1	-	no_errors
UTRN	7402	genome.wustl.edu	37	6	144784000	144784000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	144784000	144784000	G	A	SNP	UTRN	NM_007124.2	human	genbank	58_37c	+1	reviewed	missense	c.3064	p.E1022K	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	HMMPfam_ZZ,HMMSmart_ZnF_ZZ,PatternScan_ZF_ZZ_1,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMPfam_efhand_1,HMMPfam_efhand_2,superfamily_Calponin-homology,HMMSmart_SPEC,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
VPS13B	157680	genome.wustl.edu	37	8	100205158	100205158	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	100205158	100205158	C	G	SNP	VPS13B	NM_017890.3	human	genbank	58_37c	+1	reviewed	silent	c.2388	p.L796	0.999	NULL	PatternScan_ZINC_PROTEASE	-	no_errors
WNT3A	89780	genome.wustl.edu	37	1	228210498	228210498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	1	228210498	228210498	G	A	SNP	WNT3A	NM_033131.2	human	genbank	58_37c	+1	reviewed	missense	c.202	p.E68K	1.000	HMMPfam_wnt,HMMSmart_WNT1	HMMPfam_wnt,HMMSmart_WNT1,PatternScan_WNT1	-	no_errors
ZBTB10	65986	genome.wustl.edu	37	8	81399907	81399907	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	81399907	81399907	C	T	SNP	ZBTB10	NM_001105539.1	human	genbank	58_37c	+1	validated	missense	c.862	p.P288S	0.989	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZFAND1	79752	genome.wustl.edu	37	8	82629498	82629498	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	8	82629498	82629498	G	A	SNP	ZFAND1	NM_024699.2	human	genbank	58_37c	-1	validated	missense	c.124	p.H42Y	1.000	HMMPfam_zf-AN1,HMMSmart_SM00154	HMMPfam_zf-AN1,HMMSmart_SM00154	-	no_errors
ZNFX1	57169	genome.wustl.edu	37	20	47864113	47864113	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	20	47864113	47864113	C	T	SNP	ZNFX1	NM_021035.2	human	genbank	58_37c	-1	validated	silent	c.5448	p.L1816	0.997	NULL	HMMPfam_zf-NF-X1,HMMSmart_SM00438,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
ZSCAN16	80345	genome.wustl.edu	37	6	28093465	28093465	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A0HK-01A-11W-A071-09	TCGA-BH-A0HK-10A-01W-A071-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_IV	Capture	Illumina_Capture_gDNA	1	dbGAP	Illumina GAIIx	fe131f38-d0a6-446b-831f-6f1f9e382594	2765bf65-94df-4c9a-91c2-0bb653729c02	6	28093465	28093465	G	A	SNP	ZSCAN16	NM_025231.1	human	genbank	58_37c	+1	provisional	missense	c.244	p.D82N	1.000	HMMPfam_SCAN,HMMSmart_SCAN	HMMPfam_SCAN,HMMSmart_SCAN,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
