Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
A2BP1	54715	genome.wustl.edu	37	16	7568188	7568188	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	16	7568188	7568188	C	A	SNP	A2BP1	NM_145891.2	human	genbank	58_37c	+1	reviewed	missense	c.127	p.Q43K	1.000	NULL	HMMPfam_RRM_1,HMMSmart_RRM,superfamily_SSF54928	-	no_errors
ABCD2	225	genome.wustl.edu	37	12	39947821	39947821	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	39947821	39947821	G	A	SNP	ABCD2	NM_005164.3	human	genbank	58_37c	-1	reviewed	nonsense	c.2116	p.Q706*	1.000	NULL	HMMPfam_ABC_tran,HMMSmart_SM00382,HMMPfam_ABC_membrane_2,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
AGBL1	123624	genome.wustl.edu	37	15	87531306	87531306	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	15	87531306	87531306	C	T	SNP	AGBL1	NM_152336.2	human	genbank	58_37c	+1	validated	silent	c.3172	p.L1058	0.000	NULL	HMMPfam_Peptidase_M14,superfamily_ARM repeat,superfamily_Zn-dependent exopeptidases	-	no_errors
ANO5	203859	genome.wustl.edu	37	11	22271833	22271833	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	22271833	22271833	A	T	SNP	ANO5	NM_213599.2	human	genbank	58_37c	+1	reviewed	missense	c.929	p.Y310F	1.000	NULL	HMMPfam_DUF590	-	no_errors
APLF	200558	genome.wustl.edu	37	2	68804999	68804999	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	68804999	68804999	G	A	SNP	APLF	NM_173545.2	human	genbank	58_37c	+1	validated	missense	c.1381	p.E461K	0.519	NULL	superfamily_SMAD_FHA,HMMPfam_zf-CCHH	-	no_errors
ASXL3	80816	genome.wustl.edu	37	18	31320321	31320321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	18	31320321	31320321	G	A	SNP	ASXL3	NM_030632.1	human	genbank	58_37c	+1	provisional	missense	c.2953	p.D985N	1.000	NULL	NULL	-	no_errors
ATRNL1	26033	genome.wustl.edu	37	10	117075136	117075136	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	10	117075136	117075136	C	T	SNP	ATRNL1	NM_207303.2	human	genbank	58_37c	+1	validated	missense	c.2927	p.S976F	1.000	HMMPfam_PSI,HMMSmart_SM00423	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,HMMPfam_Lectin_C,HMMSmart_SM00034,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_PSI,HMMSmart_SM00423,HMMSmart_SM00181,HMMPfam_Kelch_1,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_C-type lectin-like,superfamily_Plexin repeat,superfamily_EGF/Laminin	-	no_errors
BEND3	57673	genome.wustl.edu	37	6	107391941	107391941	+	Missense_Mutation	SNP	C	C	A	rs142662918	byFrequency	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	107391941	107391941	C	A	SNP	BEND3	NM_001080450.2	human	genbank	58_37c	-1	validated	missense	c.454	p.V152L	0.000	NULL	HMMPfam_BEN	-	no_errors
BEND4	0	genome.wustl.edu	37	4	42145827	42145827	+	Missense_Mutation	SNP	C	C	G	rs139053577	by1000genomes	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	4	42145827	42145827	C	G	SNP	BEND4	NM_207406.3	human	genbank	58_37c	-1	validated	missense	c.672	p.Q224H	1.000	NULL	HMMPfam_BEN	-	no_errors
BPTF	2186	genome.wustl.edu	37	17	65909295	65909295	+	Silent	SNP	C	C	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	17	65909295	65909295	C	A	SNP	BPTF	NM_182641.3	human	genbank	58_37c	+1	reviewed	silent	c.5295	p.I1765	1.000	NULL	HMMPfam_Bromodomain,HMMSmart_BROMO,superfamily_Bromodomain,HMMSmart_PHD,HMMPfam_DDT,superfamily_FYVE_PHD_ZnF,HMMPfam_FYDLN_acid,PatternScan_EGF_2,PatternScan_BROMODOMAIN_1,HMMSmart_DDT,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
C1orf126	200197	genome.wustl.edu	37	1	15438826	15438831	+	RNA	DEL	TGTGTG	TGTGTG	-	rs139705142	by1000genomes	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	TGTGTG	TGTGTG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	15438826	15438831	TGTGTG	-	DEL	C1orf126	NR_027136.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	0.000:0.002:0.000:0.000:0.000:0.000	-	-	-	no_errors
C1orf31	388753	genome.wustl.edu	37	1	234519488	234519488	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	234519488	234519488	G	A	SNP	C1orf31	NM_001012985.1	human	genbank	58_37c	+1	predicted	missense	c.302	p.R101K	1.000	superfamily_Cytochrome c oxidase subunit h	superfamily_Cytochrome c oxidase subunit h	-	no_errors
C3orf30	152405	genome.wustl.edu	37	3	118865111	118865111	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	118865111	118865111	C	T	SNP	C3orf30	NM_152539.2	human	genbank	58_37c	+1	validated	silent	c.75	p.G25	0.000	NULL	NULL	-	no_errors
C6orf132	647024	genome.wustl.edu	37	6	42096493	42096493	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	42096493	42096493	G	A	SNP	C6orf132	ENST00000341865	human	ensembl	58_37c	-1	known	missense	c.169	p.R57W	0.285	NULL	NULL	-	no_errors
C9orf91	203197	genome.wustl.edu	37	9	117396146	117396146	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	9	117396146	117396146	G	C	SNP	C9orf91	NM_153045.3	human	genbank	58_37c	+1	validated	missense	c.573	p.Q191H	1.000	NULL	NULL	-	no_errors
CDC25C	995	genome.wustl.edu	37	5	137621494	137621494	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	137621494	137621494	G	T	SNP	CDC25C	ENST00000514017	human	ensembl	58_37c	-1	known	nonsense	c.713	p.S238*	1.000	superfamily_Rhodanese/Cell cycle control phosphatase	HMMPfam_M-inducer_phosp,HMMPfam_Rhodanese,HMMSmart_SM00450,superfamily_Rhodanese/Cell cycle control phosphatase	-	no_start_codon:pseudogene:no_stop_codon
COG3	83548	genome.wustl.edu	37	13	46050340	46050340	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	13	46050340	46050340	C	T	SNP	COG3	NM_031431.2	human	genbank	58_37c	+1	reviewed	missense	c.179	p.P60L	1.000	NULL	HMMPfam_Sec34	-	no_errors
DNMT3A	1788	genome.wustl.edu	37	2	25471111	25471111	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	25471111	25471111	T	G	SNP	DNMT3A	NM_022552.3	human	genbank	58_37c	-1	reviewed	missense	c.650	p.K217T	1.000	NULL	HMMPfam_PWWP,HMMSmart_SM00293,HMMPfam_DNA_methylase,superfamily_FYVE/PHD zinc finger,PatternScan_C5_MTASE_1,superfamily_S-adenosyl-L-methionine-dependent methyltransferases,superfamily_Tudor/PWWP/MBT	-	no_errors
DTX4	23220	genome.wustl.edu	37	11	58949648	58949648	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	58949648	58949648	G	A	SNP	DTX4	NM_015177.1	human	genbank	58_37c	+1	validated	silent	c.648	p.V216	0.000	NULL	HMMSmart_SM00184,HMMPfam_WWE,HMMSmart_SM00678,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
EEF1B2	1933	genome.wustl.edu	37	2	207027604	207027604	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	207027604	207027604	C	G	SNP	EEF1B2	NM_001037663.1	human	genbank	58_37c	+1	reviewed	missense	c.675	p.I225M	1.000	PatternScan_EF1BD_2,HMMPfam_EF1_GNE,superfamily_eEF-1beta-like	PatternScan_EF1BD_1,PatternScan_EF1BD_2,superfamily_Glutathione S-transferase (GST) C-terminal domain,HMMPfam_EF1_GNE,superfamily_eEF-1beta-like,HMMPfam_EF-1_beta_acid	-	no_errors
EIF1AX	1964	genome.wustl.edu	37	X	20148714	20148714	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	X	20148714	20148714	C	A	SNP	EIF1AX	NM_001412.3	human	genbank	58_37c	-1	reviewed	nonsense	c.349	p.E117*	1.000	superfamily_Nucleic acid-binding proteins	HMMSmart_SM00652,HMMPfam_eIF-1a,superfamily_Nucleic acid-binding proteins,PatternScan_IF1A	-	no_errors
ELMOD2	255520	genome.wustl.edu	37	4	141446688	141446688	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	4	141446688	141446688	G	A	SNP	ELMOD2	NM_153702.2	human	genbank	58_37c	+1	validated	missense	c.106	p.D36N	1.000	NULL	HMMPfam_ELMO_CED12	-	no_errors
ENPP2	5168	genome.wustl.edu	37	8	120608116	120608116	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	8	120608116	120608116	G	A	SNP	ENPP2	NM_006209.3	human	genbank	58_37c	-1	reviewed	missense	c.1099	p.H367Y	1.000	HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like	HMMPfam_Somatomedin_B,HMMSmart_SM00201,PatternScan_SMB_1,HMMPfam_Endonuclease_NS,HMMSmart_SM00477,HMMPfam_Phosphodiest,superfamily_Alkaline phosphatase-like,superfamily_His-Me finger endonucleases,superfamily_Somatomedin B domain	-	no_errors
GRIP2	80852	genome.wustl.edu	37	3	14551332	14551332	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	14551332	14551332	C	T	SNP	GRIP2	NM_001080423.1	human	genbank	58_37c	-1	provisional	missense	c.2368	p.E790K	1.000	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like	-	no_errors
HLF	3131	genome.wustl.edu	37	17	53342935	53342935	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	17	53342935	53342935	G	A	SNP	HLF	NM_002126.4	human	genbank	58_37c	+1	reviewed	silent	c.90	p.L30	1.000	NULL	HMMSmart_SM00338,HMMPfam_bZIP_2	-	no_errors
IL17RC	84818	genome.wustl.edu	37	3	9959575	9959575	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	9959575	9959575	G	A	SNP	IL17RC	ENST00000451165	human	ensembl	58_37c	+1	known	missense	c.155	p.S52N	0.002	NULL	NULL	-	no_errors
KBTBD10	10324	genome.wustl.edu	37	2	170366577	170366577	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	170366577	170366577	G	C	SNP	KBTBD10	NM_006063.2	human	genbank	58_37c	+1	validated	missense	c.289	p.D97H	1.000	HMMSmart_SM00225,superfamily_POZ domain,HMMPfam_BTB	HMMSmart_SM00225,PatternScan_MGMT,HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,superfamily_POZ domain,HMMPfam_BACK,HMMPfam_BTB	-	no_errors
KCNN2	3781	genome.wustl.edu	37	5	113831863	113831863	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	113831863	113831863	C	T	SNP	KCNN2	NM_021614.2	human	genbank	58_37c	+1	reviewed	missense	c.1724	p.S575L	1.000	NULL	HMMPfam_CaMBD,superfamily_CaM_bd,HMMPfam_SK_channel,HMMPfam_Ion_trans_2,superfamily_SSF81324	-	no_errors
KLRAQ1	129285	genome.wustl.edu	37	2	48668100	48668100	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	48668100	48668100	C	A	SNP	KLRAQ1	NM_001135629.1	human	genbank	58_37c	+1	validated	nonsense	c.8	p.S3*	1.000	NULL	HMMPfam_KLRAQ,HMMPfam_TTKRSYEDQ	-	no_errors
LIMS2	55679	genome.wustl.edu	37	2	128399741	128399741	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	128399741	128399741	C	A	SNP	LIMS2	NM_017980.4	human	genbank	58_37c	-1	validated	missense	c.615	p.K205N	1.000	HMMPfam_LIM,HMMSmart_LIM,superfamily_SSF57716	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716	-	no_errors
LOC645139	645139	genome.wustl.edu	37	17	18554458	18554458	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	17	18554458	18554458	G	T	SNP	LOC645139	XM_928169.3	human	genbank	58_37c	+1	model	missense	c.1070	p.R357I	1.000	HMMPfam_MIF4G,HMMSmart_SM00543,superfamily_ARM repeat	HMMPfam_MIF4G,HMMSmart_SM00543,HMMPfam_PAM2,superfamily_ARM repeat	-	no_errors
LRRIQ4	344657	genome.wustl.edu	37	3	169539890	169539890	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	169539890	169539890	G	A	SNP	LRRIQ4	NM_001080460.1	human	genbank	58_37c	+1	provisional	missense	c.181	p.E61K	0.072	HMMPfam_LRR_1,superfamily_SSF52058	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
MAPK9	5601	genome.wustl.edu	37	5	179676088	179676088	+	Silent	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	179676088	179676088	G	A	SNP	MAPK9	NM_002752.4	human	genbank	58_37c	-1	reviewed	silent	c.501	p.I167	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_MAPK,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	-	no_errors
MARS2	92935	genome.wustl.edu	37	2	198570604	198570604	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	198570604	198570604	C	T	SNP	MARS2	NM_138395.2	human	genbank	58_37c	+1	validated	silent	c.475	p.L159	1.000	HMMPfam_tRNA-synt_1g,superfamily_SSF52374	PatternScan_AA_TRNA_LIGASE_I,superfamily_tRNAsyn_1a_bind,HMMPfam_tRNA-synt_1g,superfamily_SSF52374	-	no_errors
MIA2	117153	genome.wustl.edu	37	14	39717240	39717240	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	14	39717240	39717240	C	G	SNP	MIA2	NM_054024.3	human	genbank	58_37c	+1	validated	missense	c.1462	p.Q488E	0.677	NULL	HMMSmart_SH3,superfamily_SH3,HMMPfam_SH3_2	-	no_errors
MLL2	8085	genome.wustl.edu	37	12	49431434	49431434	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	49431434	49431434	C	G	SNP	MLL2	NM_003482.3	human	genbank	58_37c	-1	validated	missense	c.9705	p.K3235N	1.000	NULL	HMMPfam_HMG_box,HMMSmart_SM00398,HMMPfam_SET,HMMSmart_SM00317,HMMSmart_SM00184,HMMSmart_SM00249,HMMSmart_SM00508,HMMPfam_FYRN,HMMPfam_FYRC,PatternScan_RECOMBINASES_2,superfamily_HMG-box,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00542,HMMSmart_SM00541,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_SET domain	-	no_errors
MYO10	4651	genome.wustl.edu	37	5	16673826	16673842	+	Frame_Shift_Del	DEL	TGCAGGAGCCGCCGCCA	TGCAGGAGCCGCCGCCA	-	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	TGCAGGAGCCGCCGCCA	TGCAGGAGCCGCCGCCA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	16673826	16673842	TGCAGGAGCCGCCGCCA	-	DEL	MYO10	NM_012334.2	human	genbank	58_37c	-1	validated	frame_shift_del	c.5137_5121	p.H1707fs	1.000:1.000:1.000:1.000:1.000:1.000:1.000:0.907:1.000:1.000:0.033:1.000:1.000:0.177:1.000:1.000:0.996	HMMPfam_RA,HMMSmart_B41	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_RA,HMMPfam_MyTH4,HMMSmart_MyTH4,HMMPfam_Myosin_head,HMMSmart_MYSc,HMMPfam_PH,HMMSmart_PH,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
NELL2	4753	genome.wustl.edu	37	12	44914000	44914000	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	44914000	44914000	C	G	SNP	NELL2	NM_001145107.1	human	genbank	58_37c	-1	reviewed	missense	c.2338	p.D780H	1.000	HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1	PatternScan_ASX_HYDROXYL,HMMPfam_VWC,HMMSmart_VWC,PatternScan_VWFC_1,HMMSmart_LamG,HMMSmart_EGF_CA,HMMSmart_TSPN,HMMSmart_EGF,superfamily_ConA_like_lec_gl,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
NEXN	91624	genome.wustl.edu	37	1	78381798	78381798	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	78381798	78381798	G	A	SNP	NEXN	NM_144573.3	human	genbank	58_37c	+1	reviewed	missense	c.7	p.D3N	1.000	NULL	HMMSmart_SM00409,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
NHLRC1	378884	genome.wustl.edu	37	6	18121699	18121699	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	18121699	18121699	A	G	SNP	NHLRC1	NM_198586.2	human	genbank	58_37c	-1	reviewed	missense	c.1139	p.L380P	1.000	HMMPfam_NHL,superfamily_SSF101898	HMMPfam_NHL,HMMSmart_RING,PatternScan_ZF_RING_1,superfamily_SSF101898,superfamily_SSF57850	-	no_errors
NNT	23530	genome.wustl.edu	37	5	43644857	43644857	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	43644857	43644857	G	C	SNP	NNT	NM_012343.3	human	genbank	58_37c	+1	reviewed	missense	c.1243	p.D415H	1.000	NULL	HMMPfam_PNTB,HMMPfam_AlaDh_PNT_C,HMMPfam_AlaDh_PNT_N,PatternScan_ALADH_PNT_1,PatternScan_ALADH_PNT_2,superfamily_NAD(P)-bd,superfamily_SSF52283,superfamily_SSF52467	-	no_errors
NOXO1	124056	genome.wustl.edu	37	16	2029831	2029831	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	16	2029831	2029831	C	T	SNP	NOXO1	NM_172168.1	human	genbank	58_37c	-1	provisional	silent	c.675	p.P225	0.000	superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,superfamily_PX domain	-	no_errors
NPHS1	4868	genome.wustl.edu	37	19	36322218	36322218	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	19	36322218	36322218	G	A	SNP	NPHS1	NM_004646.3	human	genbank	58_37c	-1	reviewed	missense	c.3367	p.R1123W	0.069	NULL	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_V-set,HMMPfam_ig,HMMPfam_C2-set_2,superfamily_Immunoglobulin	-	no_errors
NUP98	4928	genome.wustl.edu	37	11	3707308	3707308	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	3707308	3707308	G	A	SNP	NUP98	NM_016320.4	human	genbank	58_37c	-1	reviewed	missense	c.4571	p.S1524L	1.000	NULL	HMMPfam_Nucleoporin2,superfamily_Peptidase_S59,superfamily_SSF88633	-	no_errors
ODZ1	10178	genome.wustl.edu	37	X	123539084	123539084	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	X	123539084	123539084	C	G	SNP	ODZ1	NM_014253.3	human	genbank	58_37c	-1	reviewed	missense	c.5167	p.D1723H	1.000	NULL	HMMPfam_NHL,HMMPfam_EGF,HMMSmart_EGF,HMMPfam_RHS_repeat,HMMPfam_Ten_N,superfamily_N2O_reductase_N,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_2,superfamily_SSF101898,superfamily_SSF57196	-	no_errors
PAN2	9924	genome.wustl.edu	37	12	56718085	56718085	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	12	56718085	56718085	C	A	SNP	PAN2	NM_001127460.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1921	p.G641*	1.000	HMMPfam_UCH,superfamily_Cysteine proteinases	HMMPfam_UCH,HMMSmart_SM00479,superfamily_WD40 repeat-like,superfamily_Ribonuclease H-like,HMMPfam_Exonuc_X-T,superfamily_Cysteine proteinases	-	no_errors
PIK3CA	5290	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A	rs104886003	byCluster	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	3	178936091	178936091	G	A	SNP	PIK3CA	NM_006218.2	human	genbank	58_37c	+1	reviewed	missense	c.1633	p.E545K	1.000	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold	HMMSmart_C2,HMMPfam_PI3K_rbd,HMMSmart_PI3K_rbd,HMMPfam_PI3_PI4_kinase,HMMSmart_PI3Kc,HMMPfam_PI3Ka,HMMSmart_PI3Ka,HMMPfam_PI3K_C2,HMMSmart_PI3K_C2,HMMPfam_PI3K_p85B,HMMSmart_PI3K_p85B,superfamily_C2_CaLB,superfamily_Kinase_like,superfamily_ARM-type_fold,PatternScan_PI3_4_KINASE_1,PatternScan_PI3_4_KINASE_2,superfamily_SSF54236	-	no_errors
PLEK	5341	genome.wustl.edu	37	2	68607462	68607462	+	Silent	SNP	G	G	C	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	68607462	68607462	G	C	SNP	PLEK	NM_002664.2	human	genbank	58_37c	+1	validated	silent	c.45	p.G15	0.795	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729	HMMPfam_DEP,HMMSmart_DEP,HMMPfam_PH,HMMSmart_PH,superfamily_SSF46785,superfamily_SSF50729	-	no_errors
POLI	11201	genome.wustl.edu	37	18	51795967	51795967	+	Missense_Mutation	SNP	C	C	G	rs77607189	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	18	51795967	51795967	C	G	SNP	POLI	NM_007195.2	human	genbank	58_37c	+1	validated	missense	c.51	p.D17E	0.292	NULL	HMMPfam_IMS,superfamily_Lesion bypass DNA polymerase (Y-family) little finger domain,superfamily_DNA/RNA polymerases	-	no_errors
RANBP6	26953	genome.wustl.edu	37	9	6015273	6015273	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	9	6015273	6015273	C	G	SNP	RANBP6	NM_012416.2	human	genbank	58_37c	-1	validated	missense	c.335	p.S112T	1.000	superfamily_ARM-type_fold	HMMPfam_HEAT,superfamily_ARM-type_fold	-	no_errors
RIOK2	55781	genome.wustl.edu	37	5	96503693	96503693	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	96503693	96503693	C	T	SNP	RIOK2	NM_018343.2	human	genbank	58_37c	-1	validated	missense	c.875	p.R292K	0.995	NULL	superfamily_Kinase_like,HMMPfam_Rio2_N,HMMPfam_RIO1,PatternScan_RIO1,superfamily_SSF46785	-	no_errors
RLF	6018	genome.wustl.edu	37	1	40703390	40703390	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	1	40703390	40703390	G	A	SNP	RLF	NM_012421.3	human	genbank	58_37c	+1	validated	missense	c.3016	p.E1006K	0.992	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
RNF180	285671	genome.wustl.edu	37	5	63621163	63621163	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	63621163	63621163	C	A	SNP	RNF180	NM_001113561.1	human	genbank	58_37c	+1	validated	missense	c.1378	p.L460M	1.000	HMMSmart_SM00184,HMMPfam_zf-C3HC4,superfamily_RING/U-box	HMMSmart_SM00184,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_RING/U-box	-	no_errors
ROS1	6098	genome.wustl.edu	37	6	117622168	117622168	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	117622168	117622168	G	T	SNP	ROS1	NM_002944.2	human	genbank	58_37c	-1	reviewed	missense	c.6702	p.N2234K	0.000	superfamily_Kinase_like	HMMSmart_LY,HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_RECEPTOR_TYR_KIN_II,HMMPfam_fn3,HMMSmart_FN3,PatternScan_PROTEIN_KINASE_TYR,superfamily_FN_III-like,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF63825	-	no_errors
SCN1A	6323	genome.wustl.edu	37	2	166859083	166859083	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	2	166859083	166859083	C	T	SNP	SCN1A	NM_006920.4	human	genbank	58_37c	-1	reviewed	missense	c.4150	p.D1384N	1.000	HMMPfam_Ion_trans,superfamily_SSF81324	HMMPfam_IQ,HMMSmart_IQ,HMMPfam_Ion_trans,HMMPfam_Na_trans_assoc,PatternScan_RIBONUCLEASE_P,superfamily_SSF81324	-	no_errors
SEMA5A	9037	genome.wustl.edu	37	5	9154769	9154769	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	9154769	9154769	G	A	SNP	SEMA5A	NM_003966.2	human	genbank	58_37c	-1	reviewed	nonsense	c.1312	p.Q438*	0.172	HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_Sema,HMMSmart_Sema,superfamily_Sema,HMMPfam_PSI,HMMSmart_PSI,superfamily_Plexin-like_fold	-	no_errors
SLC37A2	219855	genome.wustl.edu	37	11	124954753	124954753	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	124954753	124954753	G	C	SNP	SLC37A2	ENST00000298280	human	ensembl	58_37c	+1	known	missense	c.1072	p.D358H	0.453	NULL	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SLIT2	9353	genome.wustl.edu	37	4	20541118	20541118	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	4	20541118	20541118	C	T	SNP	SLIT2	NM_004787.1	human	genbank	58_37c	+1	provisional	silent	c.1887	p.L629	0.807	HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00365,superfamily_L domain-like	PatternScan_ASX_HYDROXYL,HMMPfam_LRRNT,HMMSmart_SM00013,HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00282,HMMSmart_SM00179,HMMSmart_SM00369,HMMSmart_SM00274,HMMSmart_SM00041,PatternScan_CTCK_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,HMMSmart_SM00365,superfamily_L domain-like,superfamily_EGF/Laminin	-	no_errors
SSH3	54961	genome.wustl.edu	37	11	67077640	67077640	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	67077640	67077640	G	C	SNP	SSH3	NM_017857.3	human	genbank	58_37c	+1	validated	missense	c.1513	p.E505Q	0.870	NULL	HMMPfam_DSPc,HMMPfam_DEK_C,PatternScan_TYR_PHOSPHATASE_1,HMMSmart_SM00195,superfamily_(Phosphotyrosine protein) phosphatases II	-	no_errors
TBC1D24	57465	genome.wustl.edu	37	16	2548280	2548280	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	16	2548280	2548280	C	A	SNP	TBC1D24	NM_020705.1	human	genbank	58_37c	+1	provisional	nonsense	c.1007	p.S336*	1.000	HMMSmart_TLDc	HMMPfam_TBC,HMMSmart_TBC,superfamily_RabGAP_TBC,HMMPfam_TLD,HMMSmart_TLDc	-	no_errors
TCF4	6925	genome.wustl.edu	37	18	52899811	52899811	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	18	52899811	52899811	C	T	SNP	TCF4	NM_001083962.1	human	genbank	58_37c	-1	reviewed	silent	c.1578	p.T526	0.905	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
TNRC18	27320	genome.wustl.edu	37	7	5410036	5410036	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	7	5410036	5410036	C	G	SNP	TNRC18	NM_001080495.2	human	genbank	58_37c	-1	provisional	missense	c.4189	p.E1397Q	1.000	NULL	HMMPfam_BAH,HMMSmart_SM00439	-	no_errors
TRIM53	642569	genome.wustl.edu	37	11	89726904	89726904	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	11	89726904	89726904	G	A	SNP	TRIM53	ENST00000417597	human	ensembl	58_37c	-1	known	missense	c.749	p.S250L	0.002	NULL	HMMPfam_zf-B_box,HMMSmart_BBOX,HMMSmart_RING,PatternScan_ZF_RING_1,HMMPfam_zf-C3HC4,superfamily_SSF57850	-	no_errors
TSSK1B	83942	genome.wustl.edu	37	5	112770420	112770420	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	5	112770420	112770420	C	T	SNP	TSSK1B	NM_032028.3	human	genbank	58_37c	-1	validated	silent	c.117	p.A39	0.176	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
USP45	85015	genome.wustl.edu	37	6	99936655	99936655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	99936655	99936655	C	T	SNP	USP45	NM_001080481.1	human	genbank	58_37c	-1	provisional	missense	c.520	p.E174K	1.000	NULL	HMMPfam_UCH,HMMPfam_zf-UBP,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_Cysteine proteinases	-	no_errors
ZNF192	7745	genome.wustl.edu	37	6	28120897	28120897	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	6	28120897	28120897	A	T	SNP	ZNF192	NM_006298.2	human	genbank	58_37c	+1	validated	missense	c.839	p.Q280L	0.118	NULL	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF394	84124	genome.wustl.edu	37	7	99091324	99091324	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	7	99091324	99091324	C	T	SNP	ZNF394	NM_032164.2	human	genbank	58_37c	-1	provisional	missense	c.1514	p.R505H	0.158	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZNF750	79755	genome.wustl.edu	37	17	80788525	80788525	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A18J-01A-11D-A12B-09	TCGA-BH-A18J-11A-31D-A12B-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	fd9923db-2a27-432e-a0c6-4c44e6ee1f53	c5149cdb-2765-4c64-8f19-308562782032	17	80788525	80788525	C	T	SNP	ZNF750	NM_024702.2	human	genbank	58_37c	-1	reviewed	silent	c.1665	p.V555	1.000	NULL	HMMSmart_ZnF_C2H2	-	no_errors
