Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ABHD13	0	genome.wustl.edu	37	13	108881865	108881865	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	13	108881865	108881865	A	G	SNP	ABHD13	NM_032859.2	human	genbank	58_37c	+1	validated	missense	c.299	p.N100S	1.000	superfamily_alpha/beta-Hydrolases	HMMPfam_Abhydrolase_1,superfamily_alpha/beta-Hydrolases	-	no_errors
ACTN1	0	genome.wustl.edu	37	14	69346794	69346794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	14	69346794	69346794	G	A	SNP	ACTN1	NM_001130004.1	human	genbank	58_37c	-1	reviewed	missense	c.2165	p.T722I	1.000	HMMPfam_Spectrin,HMMSmart_SPEC,superfamily_Spectrin	PatternScan_ACTININ_1,PatternScan_ACTININ_2,HMMPfam_CH,HMMSmart_CH,HMMPfam_Spectrin,HMMSmart_EFh,HMMPfam_efhand_Ca_insen,superfamily_Calponin-homology,HMMSmart_SPEC,PatternScan_EF_HAND_1,HMMPfam_efhand,superfamily_Spectrin,superfamily_SSF47473	-	no_errors
AOAH	0	genome.wustl.edu	37	7	36552787	36552788	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	7	36552787	36552788	-	G	INS	AOAH	ENST00000431169	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1918_1917	p.Y639fs	0.000:0.000	NULL	HMMPfam_Lipase_GDSL,HMMPfam_SapB_2,HMMSmart_SM00741,superfamily_Saposin,PatternScan_EGF_1	-	no_errors
ARHGAP31	0	genome.wustl.edu	37	3	119101176	119101176	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	3	119101176	119101176	G	A	SNP	ARHGAP31	NM_020754.2	human	genbank	58_37c	+1	reviewed	missense	c.469	p.A157T	1.000	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	HMMPfam_RhoGAP,HMMSmart_SM00324,superfamily_GTPase activation domain GAP	-	no_errors
ARID2	0	genome.wustl.edu	37	12	46242691	46242691	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	12	46242691	46242691	G	A	SNP	ARID2	ENST00000422737	human	ensembl	58_37c	+1	known	missense	c.1574	p.R525Q	1.000	"superfamily_""Winged helix"" DNA-binding domain"	"HMMPfam_ARID,HMMSmart_SM00501,superfamily_ARID-like,PatternScan_ZINC_FINGER_C2H2_1,superfamily_""Winged helix"" DNA-binding domain"	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ASPHD2	0	genome.wustl.edu	37	22	26829801	26829801	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	22	26829801	26829801	T	C	SNP	ASPHD2	NM_020437.4	human	genbank	58_37c	+1	validated	missense	c.220	p.Y74H	1.000	NULL	HMMPfam_Asp_Arg_Hydrox,superfamily_SSF51197	-	no_errors
C9orf93	0	genome.wustl.edu	37	9	15784567	15784567	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	9	15784567	15784567	C	T	SNP	C9orf93	NM_173550.2	human	genbank	58_37c	+1	predicted	missense	c.3142	p.R1048W	1.000	NULL	NULL	-	no_errors
CELSR3	0	genome.wustl.edu	37	3	48677270	48677270	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	3	48677270	48677270	G	A	SNP	CELSR3	NM_001407.2	human	genbank	58_37c	-1	reviewed	missense	c.9748	p.L3250F	1.000	NULL	PatternScan_ASX_HYDROXYL,HMMPfam_GPS,HMMSmart_SM00303,HMMPfam_7tm_2,HMMSmart_SM00282,HMMPfam_HRM,HMMSmart_SM00008,HMMSmart_SM00179,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Cadherin-like,PatternScan_G_PROTEIN_RECEP_F2_2,superfamily_EGF/Laminin	-	no_errors
CGNL1	0	genome.wustl.edu	37	15	57731718	57731718	+	Silent	SNP	G	G	A	rs140648360	byFrequency	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	15	57731718	57731718	G	A	SNP	CGNL1	NM_032866.3	human	genbank	58_37c	+1	validated	silent	c.1521	p.Q507	0.995	NULL	HMMPfam_Myosin_tail_1	-	no_errors
CNTNAP4	0	genome.wustl.edu	37	16	76587194	76587194	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	16	76587194	76587194	G	T	SNP	CNTNAP4	NM_138994.3	human	genbank	58_37c	+1	validated	missense	c.3238	p.D1080Y	1.000	HMMSmart_SM00282,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	HMMPfam_F5_F8_type_C,HMMSmart_SM00231,PatternScan_FA58C_1,PatternScan_FA58C_2,HMMSmart_SM00282,superfamily_Fibrinogen C-terminal domain-like,HMMPfam_EGF,HMMSmart_SM00181,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_G_2	-	no_errors
COL4A5	0	genome.wustl.edu	37	X	107923956	107923956	+	Silent	SNP	T	T	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	X	107923956	107923956	T	G	SNP	COL4A5	NM_033380.1	human	genbank	58_37c	+1	reviewed	silent	c.3990	p.G1330	0.947	HMMPfam_Collagen	HMMPfam_C4,HMMSmart_C4,HMMPfam_Collagen,superfamily_C-type_lectin_fold	-	no_errors
CRAMP1L	0	genome.wustl.edu	37	16	1718050	1718050	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	16	1718050	1718050	A	T	SNP	CRAMP1L	NM_020825.3	human	genbank	58_37c	+1	validated	missense	c.3190	p.S1064C	0.746	NULL	HMMSmart_SANT	-	no_errors
DNM3	0	genome.wustl.edu	37	1	172357865	172357865	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	1	172357865	172357865	C	G	SNP	DNM3	NM_015569.3	human	genbank	58_37c	+1	validated	missense	c.2438	p.P813R	0.987	NULL	HMMPfam_Dynamin_M,HMMPfam_Dynamin_N,HMMSmart_DYNc,HMMPfam_PH,HMMSmart_PH,HMMPfam_GED,HMMSmart_GED,PatternScan_DYNAMIN,superfamily_SSF50729,superfamily_SSF52540	-	no_errors
ENSG00000233000	0	genome.wustl.edu	37	4	49640085	49640085	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	4	49640085	49640085	A	C	SNP	ENSG00000233000	ENST00000414551	human	ensembl	58_37c	+1	known	missense	c.113	p.N38T	0.000	NULL	NULL	-	no_start_codon:no_stop_codon
EPB41L3	0	genome.wustl.edu	37	18	5395094	5395094	+	Missense_Mutation	SNP	G	G	A	rs147930423	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	18	5395094	5395094	G	A	SNP	EPB41L3	NM_012307.2	human	genbank	58_37c	-1	provisional	missense	c.3125	p.T1042M	1.000	HMMPfam_4_1_CTD	HMMPfam_SAB,HMMPfam_4_1_CTD,HMMPfam_FA,HMMPfam_FERM_N,HMMPfam_FERM_C,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_Second domain of FERM,HMMSmart_SM00295,superfamily_PH domain-like,superfamily_Ubiquitin-like	-	no_errors
FAM168B	0	genome.wustl.edu	37	2	131810522	131810522	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	2	131810522	131810522	C	T	SNP	FAM168B	NM_001009993.2	human	genbank	58_37c	-1	validated	missense	c.542	p.R181Q	1.000	NULL	NULL	-	no_errors
FRG1B	0	genome.wustl.edu	37	20	29625924	29625925	+	In_Frame_Ins	INS	-	-	CTT	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	20	29625924	29625925	-	CTT	INS	FRG1B	ENST00000278882	human	ensembl	58_37c	+1	known	in_frame_ins	c.168_169	p.57in_frame_insL	0.996:0.999	superfamily_Actin_crosslink,HMMPfam_FRG1	superfamily_Actin_crosslink,HMMPfam_FRG1	-	no_errors
HBB	0	genome.wustl.edu	37	11	5248212	5248212	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	11	5248212	5248212	C	A	SNP	HBB	NM_000518.4	human	genbank	58_37c	-1	reviewed	missense	c.40	p.A14S	0.000	HMMPfam_Globin,superfamily_Globin-like	HMMPfam_Globin,superfamily_Globin-like	-	no_errors
HLA-DRB1	0	genome.wustl.edu	37	6	32549402	32549403	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	6	32549402	32549403	-	T	INS	HLA-DRB1	NM_002124.2	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.584_583	p.R195fs	0.942:0.950	HMMPfam_C1-set,HMMSmart_IGc1,superfamily_SSF48726	HMMPfam_MHC_II_beta,PatternScan_IG_MHC,HMMPfam_C1-set,HMMSmart_IGc1,superfamily_MHC_I/II-like_Ag-recog,superfamily_SSF48726	-	no_errors
IL12B	0	genome.wustl.edu	37	5	158750314	158750314	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	5	158750314	158750314	A	G	SNP	IL12B	NM_002187.2	human	genbank	58_37c	-1	reviewed	missense	c.112	p.Y38H	0.006	superfamily_SSF48726	PatternScan_HEMATOPO_REC_L_F3,HMMSmart_IGc2,HMMPfam_fn3,superfamily_FN_III-like,HMMPfam_IL12p40_C,superfamily_SSF48726	-	no_errors
KIAA1467	0	genome.wustl.edu	37	12	13215838	13215838	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	12	13215838	13215838	G	T	SNP	KIAA1467	NM_020853.1	human	genbank	58_37c	+1	validated	missense	c.781	p.V261F	0.554	NULL	NULL	-	no_errors
LOC100129981	0	genome.wustl.edu	37	17	16755087	16755088	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	AG	AG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	17	16755087	16755088	AG	-	DEL	LOC100129981	XM_001722526.1	human	genbank	58_37c	-1	model	frame_shift_del	c.144_143	p.P48fs	0.972:0.968	NULL	NULL	-	no_errors
LOC100129981	0	genome.wustl.edu	37	17	16755089	16755090	+	In_Frame_Ins	INS	-	-	CCC	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	17	16755089	16755090	-	CCC	INS	LOC100129981	XM_001722526.1	human	genbank	58_37c	-1	model	in_frame_ins	c.142_141	p.47in_frame_insG	0.962:0.996	NULL	NULL	-	no_errors
LOC100288142	0	genome.wustl.edu	37	1	148346749	148346749	+	Missense_Mutation	SNP	A	A	C	rs72631798	byCluster	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	1	148346749	148346749	A	C	SNP	LOC100288142	XM_002344444.1	human	genbank	58_37c	-1	model	missense	c.8	p.V3G	0.005	NULL	HMMPfam_DUF1220	-	no_errors
LOC440300	0	genome.wustl.edu	37	15	84860071	84860071	+	RNA	SNP	C	C	T	rs28615558	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	15	84860071	84860071	C	T	SNP	LOC440300	XR_078504.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.975	-	-	-	pseudogene
LOC643310	0	genome.wustl.edu	37	X	92542797	92542797	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	X	92542797	92542797	G	A	SNP	LOC643310	XR_038903.2	human	genbank	58_37c	-1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC654342	0	genome.wustl.edu	37	2	91843025	91843025	+	Splice_Site	SNP	T	T	C	rs228160	byFrequency	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	2	91843025	91843025	T	C	SNP	LOC654342	NR_027238.1	human	genbank	58_37c	-1	provisional	splice_site	c.NULL	NULL	0.177	-	-	-	pseudogene
MAN1B1	0	genome.wustl.edu	37	9	139996654	139996655	+	Frame_Shift_Del	DEL	CG	CG	-	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	CG	CG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	9	139996654	139996655	CG	-	DEL	MAN1B1	ENST00000371587	human	ensembl	58_37c	+1	known	frame_shift_del	c.1487_1488	p.T496fs	0.989:0.989	PatternScan_THIONIN,HMMPfam_Glyco_hydro_47	PatternScan_THIONIN,HMMPfam_Glyco_hydro_47,superfamily_Glyco_hydro_47,PatternScan_PA2_HIS	-	no_stop_codon
MAP3K1	0	genome.wustl.edu	37	5	56152545	56152545	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	5	56152545	56152545	T	C	SNP	MAP3K1	NM_005921.1	human	genbank	58_37c	+1	validated	missense	c.601	p.W201R	1.000	NULL	HMMSmart_RING,HMMSmart_S_TKc,HMMPfam_SWIM,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,PatternScan_ZF_RING_1,superfamily_SSF57850	-	no_errors
MT-CYB	0	genome.wustl.edu	37	MT	15394	15394	+	Silent	SNP	T	T	C	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	MT	15394	15394	T	C	SNP	MT-CYB	ENST00000361789	human	ensembl	58_37c	+1	known	silent	c.648	p.D216	NULL	superfamily_Transmembr_di-haem_cytochrome	HMMPfam_Cytochrom_B_N,HMMPfam_Cytochrom_B_C,superfamily_Cytochrome_b/b6_C,superfamily_Transmembr_di-haem_cytochrome	-	no_stop_codon:bad_bp_length_for_coding_region:mismatch_between_exon_seq_and_reference
MYCBP2	0	genome.wustl.edu	37	13	77786170	77786170	+	Silent	SNP	A	A	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	13	77786170	77786170	A	G	SNP	MYCBP2	NM_015057.4	human	genbank	58_37c	-1	validated	silent	c.3069	p.T1023	0.994	superfamily_RCC1/BLIP-II	HMMPfam_RCC1,PatternScan_RCC1_2,HMMSmart_SM00184,superfamily_Galactose-binding domain-like,superfamily_RCC1/BLIP-II,HMMPfam_PHR,superfamily_E set domains,superfamily_RING/U-box	-	no_errors
NCRNA00188	0	genome.wustl.edu	37	17	16343015	16343015	+	RNA	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	17	16343015	16343015	G	A	SNP	NCRNA00188	NR_027160.1	human	genbank	58_37c	+1	predicted	rna	NULL	NULL	0.000	-	-	-	no_errors
OR2A7	0	genome.wustl.edu	37	7	143955884	143955884	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	7	143955884	143955884	A	C	SNP	OR2A7	NM_001005328.1	human	genbank	58_37c	-1	provisional	missense	c.838	p.F280V	0.827	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	-	no_errors
PAPD4	0	genome.wustl.edu	37	5	78975402	78975402	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	5	78975402	78975402	C	G	SNP	PAPD4	NM_001114393.1	human	genbank	58_37c	+1	validated	missense	c.1209	p.D403E	1.000	HMMPfam_PAP_assoc,superfamily_PAP/OAS1 substrate-binding domain	HMMPfam_PAP_assoc,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
PITX2	0	genome.wustl.edu	37	4	111539459	111539459	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	4	111539459	111539459	G	A	SNP	PITX2	NM_000325.5	human	genbank	58_37c	-1	reviewed	missense	c.797	p.T266M	1.000	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_OAR,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_errors
PXDNL	0	genome.wustl.edu	37	8	52321348	52321348	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	8	52321348	52321348	G	A	SNP	PXDNL	NM_144651.4	human	genbank	58_37c	-1	validated	nonsense	c.2836	p.R946*	0.002	HMMPfam_An_peroxidase,superfamily_Heme-dependent peroxidases	HMMPfam_LRRCT,HMMSmart_SM00082,HMMPfam_VWC,HMMSmart_SM00214,PatternScan_VWFC_1,HMMPfam_LRR_1,HMMPfam_An_peroxidase,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Heme-dependent peroxidases,HMMPfam_I-set,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
RGS3	0	genome.wustl.edu	37	9	116359127	116359127	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	9	116359127	116359127	A	G	SNP	RGS3	NM_144488.4	human	genbank	58_37c	+1	reviewed	missense	c.3491	p.Q1164R	1.000	HMMPfam_RGS,HMMSmart_SM00315,superfamily_Regulator of G-protein signaling RGS	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RGS,HMMSmart_SM00315,HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_Regulator of G-protein signaling RGS,superfamily_PH domain-like	-	no_errors
SERPINA1	0	genome.wustl.edu	37	14	94845836	94845836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	14	94845836	94845836	C	T	SNP	SERPINA1	NM_000295.4	human	genbank	58_37c	-1	reviewed	missense	c.1030	p.G344R	0.813	HMMPfam_Serpin,HMMSmart_SM00093,superfamily_Serpins	HMMPfam_Serpin,HMMSmart_SM00093,PatternScan_SERPIN,superfamily_Serpins	-	no_errors
SLC43A3	0	genome.wustl.edu	37	11	57176738	57176738	+	Silent	SNP	C	C	G	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	11	57176738	57176738	C	G	SNP	SLC43A3	NM_014096.2	human	genbank	58_37c	-1	validated	silent	c.1281	p.G427	0.011	superfamily_MFS_gen_substrate_transporter	superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC4A11	0	genome.wustl.edu	37	20	3209652	3209652	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	20	3209652	3209652	A	C	SNP	SLC4A11	NM_032034.3	human	genbank	58_37c	-1	reviewed	missense	c.2072	p.V691G	1.000	HMMPfam_HCO3_cotransp	HMMPfam_HCO3_cotransp,superfamily_Phoshotransferase/anion transport protein	-	no_errors
TFAP4	0	genome.wustl.edu	37	16	4311920	4311920	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	16	4311920	4311920	G	A	SNP	TFAP4	NM_003223.2	human	genbank	58_37c	-1	validated	missense	c.385	p.R129W	1.000	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
THUMPD2	0	genome.wustl.edu	37	2	39995627	39995627	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	2	39995627	39995627	T	C	SNP	THUMPD2	ENST00000454352	human	ensembl	58_37c	-1	known	missense	c.790	p.N264D	0.986	NULL	NULL	-	no_errors
TMBIM4	0	genome.wustl.edu	37	12	66539735	66539736	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	12	66539735	66539736	-	T	INS	TMBIM4	NM_016056.2	human	genbank	58_37c	-1	validated	frame_shift_ins	c.350_349	p.T117fs	1.000:1.000	HMMPfam_UPF0005	HMMPfam_UPF0005	-	no_errors
TRIP10	0	genome.wustl.edu	37	19	6750590	6750590	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	19	6750590	6750590	G	A	SNP	TRIP10	NM_004240.2	human	genbank	58_37c	+1	validated	missense	c.1435	p.E479K	1.000	superfamily_SH3-domain	HMMPfam_FCH,HMMSmart_SM00055,HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
VCX3B	0	genome.wustl.edu	37	X	8434247	8434247	+	Silent	SNP	C	C	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	X	8434247	8434247	C	T	SNP	VCX3B	NM_001001888.2	human	genbank	58_37c	+1	reviewed	silent	c.474	p.S158	0.000	NULL	NULL	-	no_errors
VPS8	0	genome.wustl.edu	37	3	184644419	184644419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	3	184644419	184644419	G	A	SNP	VPS8	NM_001009921.2	human	genbank	58_37c	+1	validated	missense	c.2612	p.R871Q	1.000	NULL	HMMSmart_RING,superfamily_WD40_like,superfamily_ARM-type_fold,superfamily_SSF57850	-	no_errors
ZNF492	0	genome.wustl.edu	37	19	22836805	22836805	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	19	22836805	22836805	G	A	SNP	ZNF492	NM_020855.2	human	genbank	58_37c	+1	validated	missense	c.118	p.A40T	0.002	NULL	HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF587	0	genome.wustl.edu	37	19	58370315	58370315	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-BH-A1EX-01A-11D-A13L-09	TCGA-BH-A1EX-11A-21D-A13O-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	537b1685-0882-48ee-a38a-a05b5d1c8ba1	2abdd492-bbe2-4ce1-a590-8143a86660c3	19	58370315	58370315	G	T	SNP	ZNF587	ENST00000339656	human	ensembl	58_37c	+1	known	missense	c.535	p.V179F	0.000	NULL	HMMPfam_KRAB,HMMSmart_KRAB,superfamily_Krueppel-associated_box,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
