Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AGRN	375790	genome.wustl.edu	37	1	985341	985341	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	985341	985341	G	T	SNP	AGRN	NM_198576.2	human	genbank	58_37c	+1	validated	silent	c.4803	p.A1601	1.000	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196	HMMPfam_SEA,HMMSmart_SEA,HMMSmart_LamG,HMMPfam_Laminin_EGF,HMMSmart_EGF_Lam,PatternScan_EGF_LAM_1,HMMPfam_Kazal_1,HMMSmart_KAZAL,HMMSmart_FOLN,HMMPfam_NtA,HMMPfam_EGF,HMMSmart_EGF,superfamily_ConA_like_lec_gl,superfamily_TIMP_like,HMMPfam_Laminin_G_1,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF100895,superfamily_SSF57196,superfamily_SSF82671	-	no_errors
ATOH1	474	genome.wustl.edu	37	4	94751069	94751069	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	4	94751069	94751069	C	T	SNP	ATOH1	NM_005172.1	human	genbank	58_37c	+1	reviewed	missense	c.992	p.S331L	0.998	NULL	HMMPfam_HLH,HMMSmart_HLH,superfamily_HLH_basic	-	no_errors
BRWD1	54014	genome.wustl.edu	37	21	40570878	40570878	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	21	40570878	40570878	A	C	SNP	BRWD1	NM_018963.3	human	genbank	58_37c	-1	reviewed	missense	c.5464	p.S1822A	0.999	superfamily_WD40 repeat-like	HMMPfam_Bromodomain,HMMSmart_SM00297,superfamily_Bromodomain,HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_BROMODOMAIN_1,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
C2CD3	26005	genome.wustl.edu	37	11	73814404	73814404	+	Silent	SNP	C	C	T	rs147082398	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	11	73814404	73814404	C	T	SNP	C2CD3	NM_015531.4	human	genbank	58_37c	-1	validated	silent	c.2352	p.T784	0.002	NULL	HMMPfam_C2,HMMSmart_SM00239,superfamily_C2 domain (Calcium/lipid-binding domain CaLB)	-	no_errors
CACNA2D3	55799	genome.wustl.edu	37	3	55107854	55107854	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	55107854	55107854	C	T	SNP	CACNA2D3	NM_018398.2	human	genbank	58_37c	+1	reviewed	missense	c.3151	p.R1051C	1.000	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Cache_1,HMMPfam_VWA_N,superfamily_vWA-like	-	no_errors
CCDC135	84229	genome.wustl.edu	37	16	57752290	57752290	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	16	57752290	57752290	G	A	SNP	CCDC135	NM_032269.5	human	genbank	58_37c	+1	validated	missense	c.1109	p.R370K	0.989	NULL	NULL	-	no_errors
CCDC136	64753	genome.wustl.edu	37	7	128452972	128452972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	7	128452972	128452972	G	A	SNP	CCDC136	NM_022742.3	human	genbank	58_37c	+1	validated	missense	c.2752	p.D918N	0.719	superfamily_Spectrin repeat	superfamily_Prefoldin,superfamily_Spectrin repeat	-	no_errors
CD163L1	283316	genome.wustl.edu	37	12	7521559	7521559	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	12	7521559	7521559	G	T	SNP	CD163L1	NM_174941.4	human	genbank	58_37c	-1	reviewed	missense	c.4042	p.Q1348K	0.043	superfamily_SRCR-like	HMMPfam_SRCR,PatternScan_SRCR_1,HMMSmart_SM00202,superfamily_SRCR-like	-	no_errors
CD19	930	genome.wustl.edu	37	16	28948420	28948420	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	16	28948420	28948420	G	A	SNP	CD19	NM_001770.5	human	genbank	58_37c	+1	reviewed	silent	c.1161	p.A387	0.217	NULL	HMMSmart_IG,superfamily_SSF48726	-	no_errors
CD84	8832	genome.wustl.edu	37	1	160519760	160519760	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	160519760	160519760	A	T	SNP	CD84	NM_003874.3	human	genbank	58_37c	-1	validated	missense	c.868	p.S290T	0.000	NULL	HMMSmart_SM00409,superfamily_Immunoglobulin	-	no_errors
CDK12	0	genome.wustl.edu	37	17	37682239	37682239	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	17	37682239	37682239	C	T	SNP	CDK12	NM_016507.2	human	genbank	58_37c	+1	validated	missense	c.3430	p.P1144S	1.000	NULL	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
CNTN3	5067	genome.wustl.edu	37	3	74418526	74418526	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	74418526	74418526	T	C	SNP	CNTN3	NM_020872.1	human	genbank	58_37c	-1	validated	splice_site	c.762-2	e7-2	1.000	-	-	-	no_errors
COL6A6	131873	genome.wustl.edu	37	3	130313159	130313159	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	130313159	130313159	G	A	SNP	COL6A6	NM_001102608.1	human	genbank	58_37c	+1	provisional	missense	c.4505	p.R1502H	0.003	HMMPfam_Collagen	HMMPfam_VWA,HMMSmart_SM00327,HMMPfam_Collagen,superfamily_vWA-like	-	no_errors
CPA3	1359	genome.wustl.edu	37	3	148601470	148601470	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	148601470	148601470	G	A	SNP	CPA3	NM_001870.2	human	genbank	58_37c	+1	reviewed	silent	c.849	p.T283	0.972	HMMPfam_Peptidase_M14,HMMSmart_SM00631,superfamily_Zn-dependent exopeptidases	HMMPfam_Peptidase_M14,HMMSmart_SM00631,PatternScan_CARBOXYPEPT_ZN_2,HMMPfam_Propep_M14,superfamily_Protease propeptides/inhibitors,superfamily_Zn-dependent exopeptidases	-	no_errors
CXCL6	6372	genome.wustl.edu	37	4	74702958	74702958	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	4	74702958	74702958	C	T	SNP	CXCL6	NM_002993.3	human	genbank	58_37c	+1	validated	missense	c.281	p.P94L	1.000	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8	HMMPfam_IL8,HMMSmart_SCY,superfamily_Chemokine_IL8,PatternScan_SMALL_CYTOKINES_CXC	-	no_errors
ENSG00000232340	0	genome.wustl.edu	37	2	145153923	145153923	+	RNA	SNP	T	T	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	2	145153923	145153923	T	C	SNP	ZEB2	NM_014795.3	human	genbank	58_37c	-1	reviewed	intronic	c.3067+56	e8+56	1.000	-	-	-	no_errors
ENSG00000245574	0	genome.wustl.edu	37	17	38545491	38545491	+	RNA	SNP	A	A	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	17	38545491	38545491	A	G	SNP	TOP2A	NM_001067.2	human	genbank	58_37c	-1	reviewed	3_prime_untranslated_region	c.*280	NULL	0.000	-	-	-	no_errors
GAB3	139716	genome.wustl.edu	37	X	153924213	153924213	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	X	153924213	153924213	G	A	SNP	GAB3	NM_001081573.1	human	genbank	58_37c	-1	reviewed	silent	c.1509	p.D503	1.000	NULL	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	-	no_errors
GON4L	54856	genome.wustl.edu	37	1	155823258	155823258	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	155823258	155823258	A	G	SNP	GON4L	NM_001037533.1	human	genbank	58_37c	-1	validated	missense	c.314	p.L105P	0.017	NULL	HMMPfam_PAH,superfamily_PAH2 domain,superfamily_Homeodomain-like	-	no_errors
HIST3H3	8290	genome.wustl.edu	37	1	228612911	228612911	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	228612911	228612911	G	A	SNP	HIST3H3	NM_003493.2	human	genbank	58_37c	-1	reviewed	missense	c.116	p.P39L	1.000	HMMSmart_SM00428,superfamily_Histone-fold	HMMSmart_SM00428,PatternScan_HISTONE_H3_1,HMMPfam_Histone,superfamily_Histone-fold	-	no_errors
IFT88	8100	genome.wustl.edu	37	13	21165111	21165111	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	13	21165111	21165111	G	T	SNP	IFT88	NM_175605.3	human	genbank	58_37c	+1	reviewed	missense	c.243	p.K81N	1.000	NULL	HMMPfam_TPR_1,HMMSmart_SM00671,HMMSmart_SM00028,superfamily_TPR-like	-	no_errors
IRF3	3661	genome.wustl.edu	37	19	50163080	50163080	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	19	50163080	50163080	G	A	SNP	IRF3	NM_001571.4	human	genbank	58_37c	-1	validated	missense	c.1109	p.T370M	0.669	superfamily_SMAD_FHA,HMMPfam_IRF-3	HMMPfam_IRF,HMMSmart_IRF,superfamily_SMAD_FHA,HMMPfam_IRF-3,PatternScan_IRF,superfamily_SSF46785	-	no_errors
ITGA5	3678	genome.wustl.edu	37	12	54799461	54799461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	12	54799461	54799461	C	T	SNP	ITGA5	NM_002205.2	human	genbank	58_37c	-1	reviewed	missense	c.1003	p.V335I	0.057	HMMPfam_FG-GAP,HMMSmart_Int_alpha,superfamily_SSF69318	HMMPfam_Integrin_alpha,HMMPfam_FG-GAP,HMMSmart_Int_alpha,HMMPfam_Integrin_alpha2,PatternScan_INTEGRIN_ALPHA,superfamily_SSF69179,superfamily_SSF69318	-	no_errors
ITIH3	3699	genome.wustl.edu	37	3	52833413	52833413	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	52833413	52833413	T	A	SNP	ITIH3	NM_002217.3	human	genbank	58_37c	+1	validated	missense	c.815	p.F272Y	1.000	NULL	HMMPfam_VWA,HMMSmart_SM00327,HMMSmart_SM00609,HMMPfam_ITI_HC_C,HMMPfam_VIT,superfamily_vWA-like	-	no_errors
KDM6B	23135	genome.wustl.edu	37	17	7750214	7750214	+	Silent	SNP	A	A	C	rs139139016	byFrequency	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	17	7750214	7750214	A	C	SNP	KDM6B	NM_001080424.1	human	genbank	58_37c	+1	provisional	silent	c.789	p.P263	0.988	NULL	HMMSmart_SM00558,HMMPfam_JmjC	-	no_errors
KIAA1210	57481	genome.wustl.edu	37	X	118223625	118223625	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	X	118223625	118223625	C	T	SNP	KIAA1210	NM_020721.1	human	genbank	58_37c	-1	validated	missense	c.1568	p.R523Q	0.000	NULL	NULL	-	no_errors
KLHDC8B	200942	genome.wustl.edu	37	3	49212375	49212375	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	49212375	49212375	G	C	SNP	KLHDC8B	NM_173546.1	human	genbank	58_37c	+1	provisional	missense	c.742	p.V248L	1.000	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	HMMPfam_Kelch_1,HMMSmart_Kelch,superfamily_Gal_oxid_central	-	no_errors
LBXCOR1	390598	genome.wustl.edu	37	15	68118406	68118406	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	15	68118406	68118406	G	A	SNP	LBXCOR1	NM_001031807.1	human	genbank	58_37c	+1	provisional	silent	c.213	p.T71	0.991	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind	HMMPfam_Ski_Sno,superfamily_Putativ_DNA_bind,superfamily_SAND_like,HMMPfam_c-SKI_SMAD_bind	-	no_errors
LOC100287744	0	genome.wustl.edu	37	5	76128711	76128711	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	5	76128711	76128711	C	T	SNP	LOC100287744	XM_002342529.1	human	genbank	58_37c	-1	model	missense	c.403	p.V135I	0.952	NULL	NULL	-	no_errors
LRRC7	57554	genome.wustl.edu	37	1	70505050	70505050	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	70505050	70505050	C	T	SNP	LRRC7	NM_020794.2	human	genbank	58_37c	+1	validated	silent	c.3429	p.Y1143	0.988	NULL	HMMPfam_PDZ,HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00364,HMMSmart_SM00365,superfamily_RNI-like,superfamily_L domain-like	-	no_errors
NLGN3	54413	genome.wustl.edu	37	X	70375070	70375070	+	Missense_Mutation	SNP	G	G	A	rs190164205	by1000genomes	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	X	70375070	70375070	G	A	SNP	NLGN3	NM_018977.3	human	genbank	58_37c	+1	reviewed	missense	c.524	p.R175Q	1.000	HMMPfam_COesterase,superfamily_SSF53474	HMMPfam_COesterase,PatternScan_CARBOXYLESTERASE_B_2,superfamily_SSF53474	-	no_errors
NOS2	4843	genome.wustl.edu	37	17	26087691	26087691	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	17	26087691	26087691	G	T	SNP	NOS2	NM_000625.4	human	genbank	58_37c	-1	reviewed	missense	c.2968	p.R990S	1.000	HMMPfam_NAD_binding_1,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	HMMPfam_NAD_binding_1,HMMPfam_FAD_binding_1,HMMPfam_NO_synthase,PatternScan_NOS,superfamily_Nitric oxide (NO) synthase oxygenase domain,HMMPfam_Flavodoxin_1,superfamily_Riboflavin synthase domain-like,superfamily_Flavoproteins,superfamily_Ferredoxin reductase-like C-terminal NADP-linked domain	-	no_errors
PCDHB7	56129	genome.wustl.edu	37	5	140553707	140553707	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	5	140553707	140553707	C	A	SNP	PCDHB7	NM_018940.2	human	genbank	58_37c	+1	reviewed	missense	c.1291	p.L431M	0.992	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PPM1H	57460	genome.wustl.edu	37	12	63042362	63042362	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	12	63042362	63042362	G	A	SNP	PPM1H	NM_020700.1	human	genbank	58_37c	-1	validated	silent	c.1452	p.D484	1.000	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain	HMMSmart_SM00332,superfamily_Protein serine/threonine phosphatase 2C catalytic domain,HMMPfam_PP2C	-	no_errors
PRPF38A	84950	genome.wustl.edu	37	1	52871475	52871475	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	52871475	52871475	A	G	SNP	PRPF38A	NM_032864.3	human	genbank	58_37c	+1	validated	missense	c.254	p.D85G	1.000	HMMPfam_PRP38	HMMPfam_PRP38	-	no_errors
PTCH1	5727	genome.wustl.edu	37	9	98209699	98209699	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	9	98209699	98209699	G	A	SNP	PTCH1	NM_000264.3	human	genbank	58_37c	-1	reviewed	missense	c.3839	p.S1280L	0.006	NULL	HMMPfam_Patched,superfamily_SSF82866	-	no_errors
ROBO1	6091	genome.wustl.edu	37	3	78666899	78666899	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	78666899	78666899	C	G	SNP	ROBO1	NM_002941.3	human	genbank	58_37c	-1	reviewed	missense	c.4168	p.V1390L	1.000	NULL	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,superfamily_Immunoglobulin	-	no_errors
SKIL	6498	genome.wustl.edu	37	3	170078980	170078980	+	Silent	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	170078980	170078980	G	T	SNP	SKIL	NM_005414.3	human	genbank	58_37c	+1	validated	silent	c.861	p.P287	0.002	superfamily_SAND domain-like,HMMPfam_c-SKI_SMAD_bind	HMMPfam_Ski_Sno,superfamily_Putative DNA-binding domain,superfamily_SAND domain-like,HMMPfam_c-SKI_SMAD_bind	-	no_errors
SMC4	10051	genome.wustl.edu	37	3	160146661	160146661	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	160146661	160146661	T	G	SNP	SMC4	NM_001002800.1	human	genbank	58_37c	+1	validated	missense	c.2726	p.I909R	1.000	HMMPfam_SMC_N,superfamily_Prefoldin,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,superfamily_Prefoldin,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
SMG1	23049	genome.wustl.edu	37	16	18830918	18830918	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	16	18830918	18830918	G	T	SNP	SMG1	NM_015092.4	human	genbank	58_37c	-1	reviewed	missense	c.9800	p.A3267D	1.000	NULL	HMMPfam_HEAT,HMMPfam_PI3_PI4_kinase,HMMSmart_SM00146,HMMPfam_FATC,superfamily_Protein kinase-like (PK-like),superfamily_ARM repeat,PatternScan_PI3_4_KINASE_2	-	no_errors
TP53	7157	genome.wustl.edu	37	17	7578272	7578272	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	17	7578272	7578272	G	A	SNP	TP53	NM_000546.4	human	genbank	58_37c	-1	reviewed	missense	c.577	p.H193Y	1.000	superfamily_p53-like transcription factors,HMMPfam_P53	PatternScan_P53,superfamily_p53-like transcription factors,HMMPfam_P53_tetramer,superfamily_p53 tetramerization domain,HMMPfam_P53,HMMPfam_P53_TAD	-	no_errors
TRIB3	57761	genome.wustl.edu	37	20	377082	377082	+	Silent	SNP	C	C	T	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	20	377082	377082	C	T	SNP	TRIB3	NM_021158.3	human	genbank	58_37c	+1	reviewed	silent	c.825	p.R275	0.003	superfamily_Kinase_like,HMMPfam_Pkinase	superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179477701	179477701	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	2	179477701	179477701	T	C	SNP	TTN	ENST00000356127	human	ensembl	58_37c	-1	known	missense	c.42043	p.I14015V	1.000	HMMPfam_fn3,HMMSmart_SM00060	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_IG_MHC,HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,HMMPfam_PPAK,PatternScan_PROTEIN_KINASE_TYR,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,HMMPfam_Pkinase,PatternScan_FGGY_KINASES_1,PatternScan_PEROXIDASE_1	-	no_errors
TTN	7273	genome.wustl.edu	37	2	179611635	179611635	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	2	179611635	179611635	G	A	SNP	TTN	NM_133379.3	human	genbank	58_37c	-1	reviewed	silent	c.15492	p.S5164	0.000	NULL	PatternScan_THIOL_PROTEASE_HIS,PatternScan_IG_MHC,HMMSmart_IGc2,HMMSmart_IG,HMMPfam_I-set,HMMPfam_ig,HMMPfam_Titin_Z,superfamily_SSF48726	-	no_errors
UBR4	23352	genome.wustl.edu	37	1	19481474	19481474	+	Silent	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	19481474	19481474	G	A	SNP	UBR4	NM_020765.2	human	genbank	58_37c	-1	validated	silent	c.6396	p.F2132	0.998	superfamily_ARM repeat	HMMPfam_zf-UBR,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00396,superfamily_ARM repeat,PatternScan_ASP_GLU_RACEMASE_1	-	no_errors
WDR49	151790	genome.wustl.edu	37	3	167223187	167223187	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	3	167223187	167223187	T	C	SNP	WDR49	NM_178824.3	human	genbank	58_37c	-1	provisional	missense	c.1736	p.D579G	0.282	NULL	HMMSmart_SM00320,superfamily_WD40 repeat-like,PatternScan_WD_REPEATS_1,HMMPfam_WD40	-	no_errors
WDR78	79819	genome.wustl.edu	37	1	67299695	67299695	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	1	67299695	67299695	G	A	SNP	WDR78	NM_024763.4	human	genbank	58_37c	-1	validated	nonsense	c.1870	p.R624*	0.719	superfamily_WD40 repeat-like	HMMSmart_SM00320,superfamily_WD40 repeat-like,HMMPfam_WD40	-	no_errors
ZER1	10444	genome.wustl.edu	37	9	131513756	131513756	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-C8-A12W-01A-11D-A10Y-09	TCGA-C8-A12W-10A-01D-A110-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5fb924d9-3201-491b-90b1-fe8a6320b2d7	75395500-05e2-4acf-a25b-bd7743b389bc	9	131513756	131513756	G	A	SNP	ZER1	NM_006336.2	human	genbank	58_37c	-1	provisional	missense	c.974	p.P325L	0.999	NULL	superfamily_ARM-type_fold,superfamily_SSF52047	-	no_errors
