Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
ARID1A	8289	broad.mit.edu	37	1	27102150	27102150	+	Silent	SNP	C	T	T	rs149468118	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:27102150C>T	uc001bmv.1	+	19	5449	c.5076C>T	c.(5074-5076)AAC>AAT	p.N1692N	ARID1A_uc001bmt.1_Silent_p.N1691N|ARID1A_uc001bmu.1_Silent_p.N1475N|ARID1A_uc001bmx.1_Silent_p.N538N|ARID1A_uc009vsm.1_Silent_p.N20N|ARID1A_uc009vsn.1_5'UTR	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1692					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		ATACCATCAACATCCTGCTGT	0.498000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								7	24					0	0	0	0
BAI2	576	broad.mit.edu	37	1	32193839	32193839	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:32193839C>T	uc001btn.2	-	31	4813	c.4459G>A	c.(4459-4461)GAG>AAG	p.E1487K	BAI2_uc001btm.2_Missense_Mutation_p.E481K|BAI2_uc001btp.1_Missense_Mutation_p.E481K|BAI2_uc010ogn.1_Missense_Mutation_p.E457K|BAI2_uc010ogo.1_Missense_Mutation_p.E1096K|BAI2_uc010ogp.1_Missense_Mutation_p.E1420K|BAI2_uc010ogq.1_Missense_Mutation_p.E1453K|BAI2_uc001bto.2_Missense_Mutation_p.E1486K	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1487	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		TGGTTGAGCTCGTGGTAGAGT	0.637000													6	26					0	0	0	0
IPP	3652	broad.mit.edu	37	1	46206708	46206708	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:46206708C>T	uc001cou.2	-	3	856	c.589G>A	c.(589-591)GAA>AAA	p.E197K	IPP_uc001cos.3_Missense_Mutation_p.E197K	NM_005897	NP_005888	Q9Y573	IPP_HUMAN	intracisternal A particle-promoted polypeptide	197						actin cytoskeleton|cytoplasm	actin binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACCTGGTATTCATCCTCAATG	0.413000													23	61					0	0	0	0
NEGR1	257194	broad.mit.edu	37	1	72400876	72400876	+	Silent	SNP	T	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:72400876T>G	uc001dfw.2	-	2	395	c.295A>C	c.(295-297)AGG>CGG	p.R99R	NEGR1_uc001dfv.2_5'UTR|NEGR1_uc010oqs.1_Silent_p.R99R	NM_173808	NP_776169	Q7Z3B1	NEGR1_HUMAN	neuronal growth regulator 1 precursor	99	Ig-like C2-type 1.				cell adhesion	anchored to membrane|plasma membrane				ovary(1)	1		all_cancers(4;1.26e-06)|Renal(4;1.32e-08)|all_epithelial(4;5.39e-07)|Hepatocellular(141;0.117)		KIRC - Kidney renal clear cell carcinoma(4;0.00529)|Kidney(4;0.00609)|all cancers(265;0.022)|GBM - Glioblastoma multiforme(62;0.0382)|Epithelial(280;0.242)		CTGTAGTCCCTTTTATTCAAT	0.453000													16	60					0	0	0	0
RPF1	80135	broad.mit.edu	37	1	84961625	84961625	+	Missense_Mutation	SNP	C	T	T	rs139410871		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:84961625C>T	uc001djv.3	+	7	805	c.760C>T	c.(760-762)CGG>TGG	p.R254W		NM_025065	NP_079341	Q9H9Y2	RPF1_HUMAN	RNA processing factor 1	254	Brix.				rRNA processing|translation	nucleolus	aminoacyl-tRNA ligase activity|ATP binding|rRNA binding				0						TTTTACAACACGGCTGGGTCA	0.383000													12	37					0	0	0	0
CLK2	1196	broad.mit.edu	37	1	155234031	155234031	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:155234031G>A	uc001fjy.2	-	11	1497	c.1207C>T	c.(1207-1209)CGG>TGG	p.R403W	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjs.2_5'Flank|SCAMP3_uc001fju.2_5'Flank|SCAMP3_uc001fjv.2_5'Flank|SCAMP3_uc001fjt.2_5'Flank|CLK2_uc001fjw.2_Missense_Mutation_p.R402W|CLK2_uc001fjx.2_Missense_Mutation_p.R175W|CLK2_uc009wqm.2_Missense_Mutation_p.R403W	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	403	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CGGATCATCCGGGAAGGGATA	0.443000								Other_conserved_DNA_damage_response_genes					16	48					0	0	0	0
CD1E	913	broad.mit.edu	37	1	158325354	158325354	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:158325354G>A	uc001fse.2	+	3	859	c.620G>A	c.(619-621)CGG>CAG	p.R207Q	CD1E_uc010pid.1_Missense_Mutation_p.R205Q|CD1E_uc010pie.1_Missense_Mutation_p.R108Q|CD1E_uc010pif.1_Intron|CD1E_uc001fsd.2_Missense_Mutation_p.R207Q|CD1E_uc001fsk.2_Intron|CD1E_uc001fsj.2_Intron|CD1E_uc001fsc.2_Intron|CD1E_uc010pig.1_Intron|CD1E_uc001fsa.2_Intron|CD1E_uc001fsf.2_Missense_Mutation_p.R207Q|CD1E_uc001fry.2_Missense_Mutation_p.R207Q|CD1E_uc001fsg.2_Intron|CD1E_uc001fsh.2_Intron|CD1E_uc001fsi.2_Missense_Mutation_p.R207Q|CD1E_uc009wsv.2_Missense_Mutation_p.R108Q|CD1E_uc001frz.2_Intron|CD1E_uc009wsw.2_5'Flank	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	207	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					GAACTGAAACGGAAAGGTGAG	0.453000													5	15					0	0	0	0
SPTA1	6708	broad.mit.edu	37	1	158631136	158631136	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:158631136G>A	uc001fst.1	-	18	2727	c.2528C>T	c.(2527-2529)GCC>GTC	p.A843V		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	843	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCATGGCTGGCAATGTTCTC	0.423000													4	81					0	0	0	0
SPTA1	6708	broad.mit.edu	37	1	158655086	158655086	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:158655086C>T	uc001fst.1	-	2	275	c.76G>A	c.(76-78)GAG>AAG	p.E26K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	26	Spectrin 1.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGACGCCTCTCCTGGATCTCT	0.353000													22	74					0	0	0	0
TBX19	9095	broad.mit.edu	37	1	168274332	168274332	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:168274332G>T	uc001gfl.2	+	6	865	c.814G>T	c.(814-816)GCT>TCT	p.A272S	TBX19_uc001gfj.3_Intron|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	272					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					GCCTCTGCCTGCTCCCCACAC	0.552000													22	54					7.41877e-09	8.54772e-09	1	0
NPHS2	7827	broad.mit.edu	37	1	179544754	179544754	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:179544754C>T	uc001gmq.3	-	1	331	c.246G>A	c.(244-246)GCG>GCA	p.A82A	NPHS2_uc009wxi.2_Silent_p.A82A	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	82	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						TCTCCAACAGCGCCACCACCT	0.672000													7	15					0	0	0	0
LAMC2	3918	broad.mit.edu	37	1	183192457	183192457	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:183192457C>T	uc001gqa.2	+	7	1265	c.951C>T	c.(949-951)TTC>TTT	p.F317F	LAMC2_uc001gpz.3_Silent_p.F317F|LAMC2_uc010poa.1_Silent_p.F17F	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	317	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						CTTACACATTCAGGTAAAAAG	0.393000													16	36					0	0	0	0
HMCN1	83872	broad.mit.edu	37	1	186158913	186158913	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:186158913G>T	uc001grq.1	+	107	17040	c.16811G>T	c.(16810-16812)CGC>CTC	p.R5604L	HMCN1_uc001grs.1_Missense_Mutation_p.R1056L	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	5604					response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						GAGACCTACCGCATGAGGGTC	0.468000													11	35					1.58986e-06	1.7802e-06	1	0
CACNA1S	779	broad.mit.edu	37	1	201022706	201022706	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:201022706C>T	uc001gvv.2	-	30	3903	c.3676G>A	c.(3676-3678)GAG>AAG	p.E1226K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1226	IV.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CGGGCACTCTCATCTGGGTCC	0.642000													3	35					0	0	0	0
Unknown	0	broad.mit.edu	37	10	52390227	52390227	+	RNA	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr10:52390227C>A	uc001jjf.1	+	2		c.920C>A								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		TGTTGTCTAGCAGATAAGATT	0.383000													3	8					0.004672	0.00485522	1	0
SORCS3	22986	broad.mit.edu	37	10	106937929	106937929	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr10:106937929G>T	uc001kyi.1	+	14	2234	c.2007G>T	c.(2005-2007)ATG>ATT	p.M669I	SORCS3_uc010qqz.1_Intron	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	669	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CCCACATCATGACGTGAGTAC	0.493000													4	34					0.00024832	0.000259756	1	0
ABCC8	6833	broad.mit.edu	37	11	17428629	17428629	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr11:17428629G>A	uc001mnc.2	-	25	3094	c.2968C>T	c.(2968-2970)CAC>TAC	p.H990Y		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	990	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCACGCTGGTGCAGCATGGAC	0.562000													8	23					0	0	0	0
CELF1	10658	broad.mit.edu	37	11	47504267	47504267	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr11:47504267G>T	uc001nfl.2	-	6	677	c.667C>A	c.(667-669)CTT>ATT	p.L223I	CELF1_uc001nfm.2_Missense_Mutation_p.L223I|CELF1_uc001nfn.2_Missense_Mutation_p.L223I|CELF1_uc001nfo.1_Missense_Mutation_p.L249I|CELF1_uc010rhm.1_Missense_Mutation_p.L222I|CELF1_uc001nfp.2_Missense_Mutation_p.L250I|CELF1_uc001nfq.1_Missense_Mutation_p.L223I|CELF1_uc001nfr.1_Missense_Mutation_p.L223I	NM_001025596	NP_001020767	Q92879	CELF1_HUMAN	CUG triplet repeat, RNA-binding protein 1	223					embryo development|mRNA splice site selection|regulation of RNA splicing|RNA interference	cytoplasm|nucleus|ribonucleoprotein complex	BRE binding|mRNA binding|nucleotide binding|translation repressor activity, nucleic acid binding			central_nervous_system(2)|ovary(1)	3						TGGGGTCCAAGAGTATTTAGA	0.502000													10	33					3.07112e-06	3.39103e-06	1	0
SLC3A2	6520	broad.mit.edu	37	11	62656109	62656109	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr11:62656109C>T	uc001nwd.2	+	12	2061	c.1837C>T	c.(1837-1839)CGC>TGC	p.R613C	SLC3A2_uc001nwb.2_Missense_Mutation_p.R644C|SLC3A2_uc001nwc.2_Missense_Mutation_p.R614C|SLC3A2_uc001nwe.2_Missense_Mutation_p.R582C|SLC3A2_uc001nwf.2_Missense_Mutation_p.R551C|SLC3A2_uc001nwg.2_Missense_Mutation_p.R512C	NM_002394	NP_002385	P08195	4F2_HUMAN	solute carrier family 3, member 2 isoform c	613	Extracellular (Potential).				blood coagulation|carbohydrate metabolic process|cell growth|cellular nitrogen compound metabolic process|leucine import|leukocyte migration|tryptophan transport	apical plasma membrane|cell surface|integral to membrane|melanosome	calcium:sodium antiporter activity|catalytic activity|cation binding|neutral amino acid transmembrane transporter activity|protein binding				0						TGAGCTGGAACGCCTGAAACT	0.657000													12	36					0	0	0	0
SART1	9092	broad.mit.edu	37	11	65732031	65732031	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr11:65732031C>T	uc001ogl.2	+	3	509	c.417C>T	c.(415-417)GCC>GCT	p.A139A	SART1_uc010rot.1_5'UTR	NM_005146	NP_005137	O43290	SNUT1_HUMAN	squamous cell carcinoma antigen recognized by T	139					cell cycle arrest|induction of apoptosis by intracellular signals|positive regulation of cytotoxic T cell differentiation|spliceosomal snRNP assembly	Cajal body|catalytic step 2 spliceosome|cytosol				ovary(1)	1						AGGTTAATGCCATCAAGAAGG	0.517000													5	51					0	0	0	0
MTNR1B	4544	broad.mit.edu	37	11	92715442	92715442	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr11:92715442C>T	uc001pdk.1	+	2	1156	c.1053C>T	c.(1051-1053)CCC>CCT	p.P351P		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	351	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	CAGCTCCACCCATCATTGGTG	0.567000													9	53					0	0	0	0
CASP4	837	broad.mit.edu	37	11	104820329	104820329	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr11:104820329C>T	uc001pid.1	-	5	795	c.722G>A	c.(721-723)CGC>CAC	p.R241H	CASP4_uc001pib.1_Missense_Mutation_p.R185H|CASP4_uc009yxg.1_Missense_Mutation_p.R150H|CASP4_uc010rux.1_Missense_Mutation_p.R241H	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	241					apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		GAGGCAGTTGCGGTTGTTGAA	0.473000													14	77					0	0	0	0
PANX3	116337	broad.mit.edu	37	11	124489330	124489330	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr11:124489330C>A	uc001qah.2	+	4	678	c.678C>A	c.(676-678)TAC>TAA	p.Y226*		NM_052959	NP_443191	Q96QZ0	PANX3_HUMAN	pannexin 3	226	Helical; (Potential).				protein hexamerization	gap junction|integral to membrane	gap junction hemi-channel activity|ion channel activity				0	all_hematologic(175;0.215)	Breast(109;0.00109)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0219)		CTTACCTATACCTTGGTCATT	0.507000													3	23					6.4e-05	6.87568e-05	1	0
PDE3A	5139	broad.mit.edu	37	12	20766410	20766410	+	Missense_Mutation	SNP	G	A	A	rs150253039	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr12:20766410G>A	uc001reh.1	+	3	1067	c.1045G>A	c.(1045-1047)GTC>ATC	p.V349I		NM_000921	NP_000912	Q14432	PDE3A_HUMAN	phosphodiesterase 3A	349					lipid metabolic process|platelet activation|signal transduction	cytosol|integral to membrane	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding	p.V349I(1)		ovary(3)|upper_aerodigestive_tract(1)	4	Esophageal squamous(101;0.125)	Breast(259;0.134)			Aminophylline(DB01223)|Amrinone(DB01427)|Anagrelide(DB00261)|Cilostazol(DB01166)|Enoximone(DB04880)|Milrinone(DB00235)|Theophylline(DB00277)	GGACATCGCCGTCATGGGCGA	0.517000													8	44					0	0	0	0
AQP6	363	broad.mit.edu	37	12	50369453	50369453	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr12:50369453G>A	uc001rvr.1	+	4	1185	c.848G>A	c.(847-849)TGA>TAA	p.*283*	AQP6_uc001rvp.1_Silent_p.*109*|AQP6_uc001rvq.1_RNA	NM_001652	NP_001643	Q13520	AQP6_HUMAN	aquaporin 6	283					excretion|odontogenesis	integral to plasma membrane|transport vesicle membrane	anion channel activity|water channel activity				0						GAGAGTGTGTGAAACAGCCTA	0.672000													4	12					0	0	0	0
SLC4A8	9498	broad.mit.edu	37	12	51855040	51855040	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr12:51855040A>T	uc001rys.1	+	9	1244	c.1066A>T	c.(1066-1068)ATT>TTT	p.I356F	SLC4A8_uc010sni.1_Missense_Mutation_p.I303F|SLC4A8_uc001rym.2_Missense_Mutation_p.I303F|SLC4A8_uc001ryn.2_Missense_Mutation_p.I303F|SLC4A8_uc001ryo.2_Missense_Mutation_p.I303F|SLC4A8_uc001ryp.1_Missense_Mutation_p.I303F|SLC4A8_uc010snj.1_Missense_Mutation_p.I383F|SLC4A8_uc001ryq.3_Missense_Mutation_p.I356F|SLC4A8_uc001ryr.2_Missense_Mutation_p.I356F|SLC4A8_uc010snk.1_Missense_Mutation_p.I303F	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	356	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		GTACCATGAGATTGGCAGATC	0.318000													7	23					0	0	0	0
CSAD	51380	broad.mit.edu	37	12	53554091	53554091	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr12:53554091G>A	uc001sby.2	-	13	1105	c.979C>T	c.(979-981)CGC>TGC	p.R327C	CSAD_uc001sbw.2_Missense_Mutation_p.R180C|CSAD_uc009zmt.2_Missense_Mutation_p.R109C|CSAD_uc010snx.1_Missense_Mutation_p.R354C|CSAD_uc001sbz.2_Missense_Mutation_p.R327C|CSAD_uc009zmu.2_Missense_Mutation_p.R180C|CSAD_uc001sca.3_RNA	NM_015989	NP_057073	Q9Y600	CSAD_HUMAN	cysteine sulfinic acid decarboxylase	327					carboxylic acid metabolic process		pyridoxal phosphate binding|sulfinoalanine decarboxylase activity			ovary(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	CCATGGCAGCGCTTGAGCAGG	0.602000									Hereditary_Prostate_Cancer				3	37					0	0	0	0
KIF5A	3798	broad.mit.edu	37	12	57968891	57968891	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr12:57968891G>A	uc001sor.1	+	16	1949	c.1741G>A	c.(1741-1743)GAG>AAG	p.E581K	KIF5A_uc010srr.1_Missense_Mutation_p.E492K	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	581					blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						TGGGGCCATCGAGGAGGAGTT	0.527000													4	19					0	0	0	0
Unknown	0	broad.mit.edu	37	12	63359160	63359160	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr12:63359160C>T	uc001srn.1	+	1	61	c.56C>T	c.(55-57)CCT>CTT	p.P19L						SubName: Full=Putative uncharacterized protein RPL14P1;																		TCCTTTGGACCTCATGCCGGA	0.507000													5	48					0	0	0	0
TRHDE	29953	broad.mit.edu	37	12	72969274	72969274	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr12:72969274C>A	uc001sxa.2	+	12	2168	c.2138C>A	c.(2137-2139)TCT>TAT	p.S713Y		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	713	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						CAGGTTCTTTCTGTCAGTAAC	0.403000													14	30					3.27435e-08	3.74548e-08	1	0
OSBPL8	114882	broad.mit.edu	37	12	76763056	76763056	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr12:76763056C>T	uc001sye.1	-	21	2746	c.2266G>A	c.(2266-2268)GAT>AAT	p.D756N	OSBPL8_uc001syf.1_Missense_Mutation_p.D714N|OSBPL8_uc001syg.1_Missense_Mutation_p.D714N	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	756					lipid transport		lipid binding			ovary(1)	1						TGTATCATATCATTAAGTGGG	0.303000													8	42					0	0	0	0
PCDH17	27253	broad.mit.edu	37	13	58207860	58207860	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr13:58207860G>A	uc001vhq.1	+	1	2072	c.1180G>A	c.(1180-1182)GGA>AGA	p.G394R	PCDH17_uc010aec.1_Missense_Mutation_p.G394R	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	394	Extracellular (Potential).|Gly-rich.|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GGTCCTAGGCGGAGGAGGGAc	0.527000													4	6					0	0	0	0
PIBF1	10464	broad.mit.edu	37	13	73505317	73505317	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr13:73505317G>A	uc001vjc.2	+	14	2050	c.1745G>A	c.(1744-1746)AGA>AAA	p.R582K	PIBF1_uc001vjb.2_Missense_Mutation_p.R582K|PIBF1_uc010aep.2_Missense_Mutation_p.R41K	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	582						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		CACTTGGCAAGAAGAGTGCTT	0.318000													12	30					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106322248	106322248	+	RNA	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr14:106322248C>T	uc010tyt.1	-	3598		c.55238G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						AGGCAGCCAACGGCCACGCTG	0.577000													7	9					0	0	0	0
DUOX2	50506	broad.mit.edu	37	15	45388040	45388040	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr15:45388040C>T	uc010bea.2	-	30	4269	c.4066G>A	c.(4066-4068)GCT>ACT	p.A1356T	DUOX2_uc001zun.2_Missense_Mutation_p.A1356T	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1356	Cytoplasmic (Potential).|FAD-binding FR-type.				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		GGGTATCCAGCACAGCCATTG	0.622000													12	10					0	0	0	0
NEDD4	4734	broad.mit.edu	37	15	56134138	56134138	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr15:56134138G>A	uc002adj.2	-	15	3389	c.3089C>T	c.(3088-3090)TCT>TTT	p.S1030F	NEDD4_uc002adl.2_Missense_Mutation_p.S611F|NEDD4_uc002adi.2_Missense_Mutation_p.S958F|NEDD4_uc010ugj.1_Missense_Mutation_p.S1014F|NEDD4_uc010bfm.2_Missense_Mutation_p.S1013F|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	1030	HECT.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		TTACGTAGCAGAATATTCAAA	0.303000													28	28					0	0	0	0
IQCH	64799	broad.mit.edu	37	15	67571827	67571827	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr15:67571827C>T	uc002aqo.1	+	4	411	c.364C>T	c.(364-366)CTG>TTG	p.L122L	IQCH_uc010ujv.1_5'UTR|IQCH_uc002aqn.1_Intron|IQCH_uc002aqq.1_Intron|IQCH_uc002aqp.1_Intron|IQCH_uc002aqm.2_Silent_p.L122L	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	122										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		CAGTTCATCTCTGCCTGTCTT	0.269000													28	27					0	0	0	0
CHD2	1106	broad.mit.edu	37	15	93563370	93563370	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr15:93563370C>T	uc002bsp.2	+	38	5610	c.5035C>T	c.(5035-5037)CGA>TGA	p.R1679*	CHD2_uc002bso.1_Nonsense_Mutation_p.R1679*	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1679					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			TGGGGACCGGCGACATATGGA	0.547000													12	17					0	0	0	0
MSLN	10232	broad.mit.edu	37	16	815614	815614	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr16:815614G>A	uc002cjw.1	+	9	843	c.792G>A	c.(790-792)CCG>CCA	p.P264P	MSLN_uc002cjt.1_Silent_p.P264P|MSLN_uc002cju.1_Silent_p.P264P|MSLN_uc010brd.1_Silent_p.P263P|MSLN_uc002cjv.1_Silent_p.P264P|MSLN_uc002cjx.1_Silent_p.P264P|MSLN_uc002cjy.1_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	264	Required for megakaryocyte-potentiating factor activity.				cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				GCAGCATCCCGCAGGTGAGAC	0.706000													5	15					0	0	0	0
CES1	1066	broad.mit.edu	37	16	55860122	55860122	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr16:55860122C>T	uc002eim.2	-	3	451	c.343G>A	c.(343-345)GAC>AAC	p.D115N	CES1_uc002eil.2_Missense_Mutation_p.D116N|CES1_uc002ein.2_Missense_Mutation_p.D115N	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	115				D -> H (in Ref. 19; AAA83932).	response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	TAAAGACAGTCTTCAGAAAGC	0.512000													27	103					0	0	0	0
CDH13	1012	broad.mit.edu	37	16	83813633	83813633	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr16:83813633A>G	uc002fgx.2	+	12	1862	c.1742A>G	c.(1741-1743)AAT>AGT	p.N581S	CDH13_uc010vns.1_Missense_Mutation_p.N628S|CDH13_uc010vnt.1_Missense_Mutation_p.N327S|CDH13_uc010vnu.1_Missense_Mutation_p.N542S	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	581	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GTGAATGACAATGCCCCGTTC	0.488000													6	18					0	0	0	0
MYH4	4622	broad.mit.edu	37	17	10363395	10363395	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr17:10363395C>T	uc002gmn.2	-	14	1401	c.1290G>A	c.(1288-1290)CTG>CTA	p.L430L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	430	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGGCTTTGGCCAGAGCACCCA	0.473000													17	163					0	0	0	0
Unknown	0	broad.mit.edu	37	17	19091455	19091455	+	IGR	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr17:19091455G>C								GRAPL (29307 upstream) : EPN2 (49235 downstream)																							cggctttctggcgttgcttgg	0.015000													16	204					0	0	0	0
Unknown	0	broad.mit.edu	37	17	19091459	19091459	+	IGR	SNP	T	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr17:19091459T>G								GRAPL (29311 upstream) : EPN2 (49231 downstream)																							tttctggcgttgcttggctgc	0.020000													16	195					0	0	0	0
ALDOC	230	broad.mit.edu	37	17	26902241	26902241	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr17:26902241C>G	uc002hbp.2	-	3	369	c.224G>C	c.(223-225)GGA>GCA	p.G75A	ALDOC_uc010cro.2_Missense_Mutation_p.G75A	NM_005165	NP_005156	P09972	ALDOC_HUMAN	fructose-bisphosphate aldolase C	75					fructose 1,6-bisphosphate metabolic process|gluconeogenesis|glycolysis	cytosol	cytoskeletal protein binding|fructose-bisphosphate aldolase activity			ovary(1)	1	Lung NSC(42;0.00431)					AATGACGCCTCCAATGCACTT	0.527000											OREG0024278	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	24					0	0	0	0
ATAD5	79915	broad.mit.edu	37	17	29220528	29220528	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr17:29220528G>C	uc002hfs.1	+	21	5003	c.4657G>C	c.(4657-4659)GAA>CAA	p.E1553Q		NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	1553					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				GAAACACTCTGAAAGAGAACA	0.368000													19	28					0	0	0	0
UNC45B	146862	broad.mit.edu	37	17	33507656	33507656	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr17:33507656G>A	uc002hja.2	+	18	2437	c.2340G>A	c.(2338-2340)GCG>GCA	p.A780A	UNC45B_uc002hjb.2_Silent_p.A778A|UNC45B_uc002hjc.2_Silent_p.A778A|UNC45B_uc010cto.2_Silent_p.A699A	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	780	ARM 3.				cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				TGCGGCAGGCGGCCACCGAGT	0.587000													9	27					0	0	0	0
ERBB2	2064	broad.mit.edu	37	17	37883113	37883113	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr17:37883113C>T	uc002hso.2	+	25	3254	c.3016C>T	c.(3016-3018)CGC>TGC	p.R1006C	ERBB2_uc002hsm.2_Missense_Mutation_p.R976C|ERBB2_uc010cwa.2_Missense_Mutation_p.R991C|ERBB2_uc002hsp.2_Missense_Mutation_p.R809C|ERBB2_uc010cwb.2_Missense_Mutation_p.R1006C|ERBB2_uc010wek.1_Missense_Mutation_p.R730C	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	1006	Cytoplasmic (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	CACCTTCTACCGCTCACTGCT	0.637000		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			14	58					0	0	0	0
L3MBTL4	91133	broad.mit.edu	37	18	6311562	6311562	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr18:6311562G>A	uc002kmz.3	-	3	223	c.63C>T	c.(61-63)GAC>GAT	p.D21D	L3MBTL4_uc010dkt.2_Silent_p.D21D	NM_173464	NP_775735	Q8NA19	LMBL4_HUMAN	l(3)mbt-like 4	21					chromatin modification	nucleus	sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|pancreas(1)	3		Colorectal(10;0.0249)				CCAAGCGTCCGTCCTGATCCA	0.483000													38	131					0	0	0	0
POTEC	388468	broad.mit.edu	37	18	14534921	14534921	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr18:14534921T>A	uc010dln.2	-	4	1350	c.896A>T	c.(895-897)AAT>ATT	p.N299I	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	299	ANK 5.									skin(3)	3						ATCAAGTGCATTTAAATTAGC	0.303000													6	54					0	0	0	0
DOK6	220164	broad.mit.edu	37	18	67266711	67266711	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr18:67266711C>T	uc002lkl.2	+	3	456	c.266C>T	c.(265-267)TCG>TTG	p.S89L		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	89	PH.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				GATGAAACATCGAAGACATTT	0.448000													8	29					0	0	0	0
NETO1	81832	broad.mit.edu	37	18	70526309	70526309	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr18:70526309G>T	uc002lkw.2	-	4	505	c.221C>A	c.(220-222)GCC>GAC	p.A74D	NETO1_uc002lkx.1_Missense_Mutation_p.A73D|NETO1_uc002lky.1_Missense_Mutation_p.A74D|NETO1_uc002lkz.2_Missense_Mutation_p.A73D	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	74	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		TCTTGGAGCGGCTGTAAAGAA	0.368000													11	49					5.16669e-11	6.04046e-11	1	0
MUC16	94025	broad.mit.edu	37	19	9009703	9009703	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:9009703G>T	uc002mkp.2	-	39	39227	c.39023C>A	c.(39022-39024)CCT>CAT	p.P13008H	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13010	Extracellular (Potential).|SEA 7.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACCAGGAGAGGAACAGCTGC	0.453000													5	59					5.9392e-07	6.6974e-07	1	0
NR2C2AP	126382	broad.mit.edu	37	19	19313662	19313662	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:19313662G>C	uc002nlx.2	-	2	436	c.67C>G	c.(67-69)CGG>GGG	p.R23G	NR2C2AP_uc010xqq.1_5'Flank|NR2C2AP_uc002nly.2_Missense_Mutation_p.R23G	NM_176880	NP_795361	Q86WQ0	NR2CA_HUMAN	TR4 orphan receptor associated protein TRA16	23					cell adhesion|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm				ovary(1)	1			Epithelial(12;0.00235)			CCAAACTGCCGAGTGTTGCGA	0.577000													12	41					0	0	0	0
ZNF536	9745	broad.mit.edu	37	19	30935483	30935483	+	Silent	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:30935483C>A	uc002nsu.1	+	2	1152	c.1014C>A	c.(1012-1014)GGC>GGA	p.G338G	ZNF536_uc010edd.1_Silent_p.G338G	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	338					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACGGCGGTGGCGAGCAGTCGG	0.652000													8	77					5.18039e-06	5.64166e-06	1	0
WDR88	126248	broad.mit.edu	37	19	33623312	33623312	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:33623312G>A	uc002nui.2	+	1	315	c.237G>A	c.(235-237)CCG>CCA	p.P79P		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	79										ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					ACCAGGTGCCGGAGAAATTGA	0.657000													12	43					0	0	0	0
ATP4A	495	broad.mit.edu	37	19	36048663	36048663	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:36048663G>T	uc002oal.1	-	11	1616	c.1587C>A	c.(1585-1587)TGC>TGA	p.C529*	ATP4A_uc010eee.1_5'UTR	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	529	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GGATGGAGCTGCAGCGCTCCA	0.652000													4	11					1.024e-07	1.16297e-07	1	0
GRLF1	2909	broad.mit.edu	37	19	47491269	47491269	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:47491269C>T	uc010ekv.2	+	3	3850	c.3850C>T	c.(3850-3852)CGG>TGG	p.R1284W		NM_004491	NP_004482	Q9NRY4	RHG35_HUMAN	glucocorticoid receptor DNA binding factor 1	1284	Rho-GAP.				axon guidance|negative regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol	DNA binding|Rho GTPase activator activity|transcription corepressor activity			central_nervous_system(1)	1		all_cancers(25;1.51e-09)|all_epithelial(76;1.87e-07)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|Ovarian(192;0.0129)|all_neural(266;0.026)|Breast(70;0.077)		all cancers(93;2.03e-05)|OV - Ovarian serous cystadenocarcinoma(262;2.57e-05)|Epithelial(262;0.00135)|GBM - Glioblastoma multiforme(486;0.0289)		AGGCATCTACCGGGTCAGCGG	0.572000													4	15					0	0	0	0
NTF4	4909	broad.mit.edu	37	19	49564712	49564712	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:49564712G>A	uc002pmf.3	-	2	684	c.543C>T	c.(541-543)ACC>ACT	p.T181T	CGB7_uc010yah.1_Intron	NM_006179	NP_006170	P34130	NTF4_HUMAN	neurotrophin 5 preproprotein	181					adult locomotory behavior|epidermis development|ganglion mother cell fate determination|long-term memory|sensory organ boundary specification	endoplasmic reticulum lumen|extracellular region	growth factor activity				0		all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_epithelial(76;3.83e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000371)|OV - Ovarian serous cystadenocarcinoma(262;0.000503)|GBM - Glioblastoma multiforme(486;0.00518)|Epithelial(262;0.0427)		GGGCATCAGCGGTCAATGCCC	0.662000													12	26					0	0	0	0
CEACAM18	729767	broad.mit.edu	37	19	51981929	51981929	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:51981929G>T	uc002pwv.1	+	2	216	c.216G>T	c.(214-216)TGG>TGT	p.W72C		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	72						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GGAGCCTGTGGAGGAGGGTCT	0.632000													6	16					5.18039e-06	5.64166e-06	1	0
ZNF613	79898	broad.mit.edu	37	19	52443551	52443551	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:52443551C>T	uc002pxz.1	+	4	528	c.105C>T	c.(103-105)GAC>GAT	p.D35D	ZNF613_uc002pya.1_Translation_Start_Site	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	35	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		TGTACCGAGACGTGATGTTGG	0.542000													26	102					0	0	0	0
ZNF616	90317	broad.mit.edu	37	19	52619658	52619658	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:52619658A>T	uc002pym.2	-	4	1042	c.759T>A	c.(757-759)AAT>AAA	p.N253K	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	253	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		CAAAATATGAATTTTTTCTGA	0.398000													8	72					0	0	0	0
LILRA2	11027	broad.mit.edu	37	19	55087311	55087311	+	Silent	SNP	G	T	T	rs146068077	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:55087311G>T	uc002qgg.3	+	6	1079	c.990G>T	c.(988-990)CCG>CCT	p.P330P	LILRA2_uc010ern.2_Silent_p.P330P|LILRA2_uc002qgf.2_Silent_p.P330P|LILRA2_uc010yfe.1_Silent_p.P330P|LILRA2_uc010yff.1_Silent_p.P318P|LILRA2_uc010ero.2_Silent_p.P318P|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	330	Ig-like C2-type 4.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		CGGTGCAGCCGGTCCCCACAG	0.607000													11	23					0.00010058	0.00010733	1	0
LILRB1	10859	broad.mit.edu	37	19	55146110	55146110	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:55146110G>T	uc002qgj.2	+	11	1719	c.1379G>T	c.(1378-1380)GGG>GTG	p.G460V	LILRB1_uc010erp.1_Missense_Mutation_p.G75V|LILRB1_uc002qgl.2_Missense_Mutation_p.G460V|LILRB1_uc002qgk.2_Missense_Mutation_p.G461V|LILRB1_uc002qgm.2_Missense_Mutation_p.G461V|LILRB1_uc010erq.2_Missense_Mutation_p.G444V|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	460	Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		AGGCACCTGGGGGTTGTGATC	0.333000										HNSCC(37;0.09)			4	17					0.00024832	0.000259756	1	0
NLRP7	199713	broad.mit.edu	37	19	55449436	55449436	+	Missense_Mutation	SNP	C	T	T	rs139797510	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr19:55449436C>T	uc002qih.3	-	5	2181	c.2105G>A	c.(2104-2106)AGC>AAC	p.S702N	NLRP7_uc002qig.3_Missense_Mutation_p.S674N|NLRP7_uc002qii.3_Missense_Mutation_p.S702N|NLRP7_uc010esk.2_Missense_Mutation_p.S702N|NLRP7_uc010esl.2_Missense_Mutation_p.S730N	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	702							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		ATGACAGGTGCTACGGGTTAC	0.398000													52	171					0	0	0	0
SNTG2	54221	broad.mit.edu	37	2	1079296	1079296	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:1079296G>C	uc002qwq.2	+	2	293	c.165G>C	c.(163-165)CAG>CAC	p.Q55H	SNTG2_uc002qwp.2_RNA|SNTG2_uc010ewi.2_Missense_Mutation_p.Q55H	NM_018968	NP_061841	Q9NY99	SNTG2_HUMAN	syntrophin, gamma 2	55					central nervous system development	cytoplasm|cytoskeleton|sarcolemma|syntrophin complex	actin binding|PDZ domain binding			ovary(1)|large_intestine(1)|breast(1)	3	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.00469)		all cancers(51;0.0178)|OV - Ovarian serous cystadenocarcinoma(76;0.07)|Epithelial(75;0.0864)|GBM - Glioblastoma multiforme(21;0.173)		TGACAATTCAGAAACAAGATG	0.498000													22	36					0	0	0	0
MYCN	4613	broad.mit.edu	37	2	16086016	16086016	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:16086016C>T	uc002rci.2	+	3	1492	c.1192C>T	c.(1192-1194)CGG>TGG	p.R398W	MYCN_uc010yjr.1_Missense_Mutation_p.R390W	NM_005378	NP_005369	P04198	MYCN_HUMAN	v-myc myelocytomatosis viral related oncogene,	398	Helix-loop-helix motif.				regulation of transcription from RNA polymerase II promoter	chromatin|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5	all_cancers(1;1.35e-08)|all_neural(1;2.92e-24)|Lung SC(1;3.26e-07)|Medulloblastoma(1;6.9e-06)|all_lung(1;1.26e-05)|Glioma(3;0.135)|Acute lymphoblastic leukemia(172;0.155)|all_epithelial(1;0.169)|all_hematologic(175;0.197)		GBM - Glioblastoma multiforme(3;0.000332)			CAACGACCTTCGGTCCAGCTT	0.567000			A		neuroblastoma								13	69					0	0	0	0
CCDC88A	55704	broad.mit.edu	37	2	55570925	55570925	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:55570925G>A	uc002ryv.2	-	12	2034	c.1192C>T	c.(1192-1194)CGA>TGA	p.R398*	CCDC88A_uc010yoz.1_Nonsense_Mutation_p.R398*|CCDC88A_uc010ypa.1_Nonsense_Mutation_p.R398*|CCDC88A_uc010ypb.1_Nonsense_Mutation_p.R300*	NM_001135597	NP_001129069	Q3V6T2	GRDN_HUMAN	coiled-coil domain containing 88A isoform 1	398	Potential.				activation of protein kinase B activity|cell migration|cellular membrane organization|DNA replication|lamellipodium assembly|microtubule cytoskeleton organization|regulation of actin cytoskeleton organization|regulation of cell proliferation|regulation of DNA replication|regulation of neuron projection development|TOR signaling cascade	cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|Golgi apparatus|lamellipodium|plasma membrane	actin binding|microtubule binding|phosphatidylinositol binding|protein homodimerization activity|protein kinase B binding			ovary(2)|skin(2)	4						TCCATATCTCGTTCCTTTTTT	0.308000													8	14					0	0	0	0
DOK1	1796	broad.mit.edu	37	2	74783065	74783065	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:74783065C>T	uc002sms.2	+	4	521	c.499C>T	c.(499-501)CGC>TGC	p.R167C	LOXL3_uc010ffm.1_5'Flank|LOXL3_uc002smp.1_5'Flank|LOXL3_uc002smq.1_5'Flank|LOXL3_uc010ffn.1_5'Flank|DOK1_uc002smr.2_Missense_Mutation_p.R28C|DOK1_uc010ffo.2_Missense_Mutation_p.R28C|DOK1_uc002smt.2_Intron|DOK1_uc002smu.2_Intron|DOK1_uc010yrz.1_Missense_Mutation_p.R156C|DOK1_uc002smv.2_Missense_Mutation_p.R28C|DOK1_uc002smw.1_5'UTR	NM_001381	NP_001372	Q99704	DOK1_HUMAN	docking protein 1	167	IRS-type PTB.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol|perinuclear region of cytoplasm	insulin receptor binding				0						GGCCGCCGAGCGCTGTGGCCT	0.637000													12	31					0	0	0	0
SNRNP200	23020	broad.mit.edu	37	2	96942823	96942823	+	Missense_Mutation	SNP	G	A	A	rs150442718		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:96942823G>A	uc002svu.2	-	42	6174	c.6088C>T	c.(6088-6090)CGC>TGC	p.R2030C	SNRNP200_uc002svt.2_Missense_Mutation_p.R640C|SNRNP200_uc010yuj.1_RNA	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	2030	SEC63 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						GCTCACCTGCGGATGCTGTCC	0.552000													9	71					0	0	0	0
DPP10	57628	broad.mit.edu	37	2	116535403	116535403	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:116535403C>A	uc002tla.1	+	15	1811	c.1354C>A	c.(1354-1356)CTG>ATG	p.L452M	DPP10_uc002tlb.1_Missense_Mutation_p.L402M|DPP10_uc002tlc.1_Missense_Mutation_p.L448M|DPP10_uc002tle.2_Missense_Mutation_p.L456M|DPP10_uc002tlf.1_Missense_Mutation_p.L445M	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	452	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AGGAAGGCAGCTGTACAGGTA	0.403000													17	41					1.00905e-13	1.1973e-13	1	0
LRP1B	53353	broad.mit.edu	37	2	140992441	140992441	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:140992441C>T	uc002tvj.1	-	90	14545	c.13573G>A	c.(13573-13575)GGG>AGG	p.G4525R		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4525	Cytoplasmic (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ggtcctccccctatgtacctg	0.060000										TSP Lung(27;0.18)			6	29					0	0	0	0
LRP1B	53353	broad.mit.edu	37	2	141359128	141359128	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:141359128T>C	uc002tvj.1	-	42	7852	c.6880A>G	c.(6880-6882)ACC>GCC	p.T2294A		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2294	Extracellular (Potential).|LDL-receptor class B 24.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTGTGTCTGGTGATGGATGAG	0.512000										TSP Lung(27;0.18)			9	29					0	0	0	0
FIGN	55137	broad.mit.edu	37	2	164467308	164467308	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:164467308T>A	uc002uck.1	-	3	1345	c.1034A>T	c.(1033-1035)CAG>CTG	p.Q345L		NM_018086	NP_060556	Q5HY92	FIGN_HUMAN	fidgetin	345						nuclear matrix	ATP binding|nucleoside-triphosphatase activity			large_intestine(2)|ovary(1)|skin(1)	4						CATAGGACTCTGTGTAGATCT	0.438000													21	54					0	0	0	0
TTN	7273	broad.mit.edu	37	2	179467097	179467097	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:179467097C>T	uc010zfg.1	-	232	47552	c.47328G>A	c.(47326-47328)AAG>AAA	p.K15776K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K9471K|TTN_uc010zfi.1_Silent_p.K9404K|TTN_uc010zfj.1_Silent_p.K9279K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16703							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAATCTGTACTTCCTGAGCT	0.418000													4	41					0	0	0	0
HIBCH	26275	broad.mit.edu	37	2	191116990	191116990	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:191116990G>A	uc002uru.2	-	8	644	c.561C>T	c.(559-561)CTC>CTT	p.L187L	HIBCH_uc002urv.2_Silent_p.L187L	NM_014362	NP_055177	Q6NVY1	HIBCH_HUMAN	3-hydroxyisobutyryl-Coenzyme A hydrolase isoform	187				LPRLQGKLGYFLALT -> FATTPRKTWLLPCIN (in Ref. 1; AAC52114).	branched chain family amino acid catabolic process	mitochondrial matrix	3-hydroxyisobutyryl-CoA hydrolase activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000586)|Epithelial(96;0.0286)|all cancers(119;0.0814)			GTTTTCCTTGGAGTCGTGGCA	0.363000													21	33					0	0	0	0
DNAH7	56171	broad.mit.edu	37	2	196726485	196726485	+	Silent	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:196726485G>C	uc002utj.3	-	42	7793	c.7692C>G	c.(7690-7692)CTC>CTG	p.L2564L		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2564					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						AGATTAATTCGAGGTAAGAGG	0.308000													17	24					0	0	0	0
CASP8	841	broad.mit.edu	37	2	202150030	202150030	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:202150030C>T	uc002uxr.1	+	9	1503	c.1294C>T	c.(1294-1296)CGA>TGA	p.R432*	CASP8_uc002uxp.1_Nonsense_Mutation_p.R449*|CASP8_uc002uxq.1_Nonsense_Mutation_p.R417*|CASP8_uc002uxt.1_Nonsense_Mutation_p.R491*|CASP8_uc002uxu.1_RNA|CASP8_uc002uxw.1_Nonsense_Mutation_p.R417*|CASP8_uc002uxy.1_Intron|CASP8_uc002uxx.1_Intron|CASP8_uc010ftf.2_Nonsense_Mutation_p.R348*	NM_033355	NP_203519	Q14790	CASP8_HUMAN	caspase 8 isoform B precursor	432					activation of caspase activity|activation of pro-apoptotic gene products|cellular component disassembly involved in apoptosis|cellular response to mechanical stimulus|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|positive regulation of I-kappaB kinase/NF-kappaB cascade|proteolysis involved in cellular protein catabolic process|response to tumor necrosis factor	centrosome|cytosol|mitochondrial outer membrane	cysteine-type endopeptidase activity|protein binding|protein binding			upper_aerodigestive_tract(2)|ovary(1)|breast(1)|skin(1)	5						CCTGAGAGAGCGATGTCCTCG	0.507000										HNSCC(4;0.00038)			21	45					0	0	0	0
TMEM198	130612	broad.mit.edu	37	2	220413898	220413898	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:220413898G>A	uc002vme.2	+	5	1352	c.767G>A	c.(766-768)CGC>CAC	p.R256H	TMEM198_uc002vmf.2_Missense_Mutation_p.R256H|hsa-mir-3132|MI0014152_5'Flank	NM_001005209	NP_001005209	Q66K66	TM198_HUMAN	transmembrane protein 198	256	Arg-rich.					integral to membrane				ovary(1)	1		Renal(207;0.0376)		Epithelial(149;6.49e-08)|all cancers(144;6.45e-06)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		CAGCGCCGACGCGTGCAACTG	0.627000													16	99					0	0	0	0
TRAF3IP1	26146	broad.mit.edu	37	2	239237417	239237417	+	Silent	SNP	T	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:239237417T>C	uc002vye.2	+	4	564	c.445T>C	c.(445-447)TTG>CTG	p.L149L	TRAF3IP1_uc002vyf.2_Silent_p.L149L	NM_015650	NP_056465	Q8TDR0	MIPT3_HUMAN	TNF receptor-associated factor 3 interacting	149	Abolishes microtubules-binding when missing.					cytoplasm|cytoskeleton	protein binding			ovary(1)	1		all_epithelial(40;3.22e-10)|Breast(86;0.000523)|Renal(207;0.00571)|Ovarian(221;0.156)|all_hematologic(139;0.182)		Epithelial(121;9.92e-24)|OV - Ovarian serous cystadenocarcinoma(60;7.85e-12)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.01e-07)|BRCA - Breast invasive adenocarcinoma(100;7.72e-05)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0184)		ATCTCAGGAATTGGATAATAA	0.458000													3	24					0	0	0	0
MTERFD2	130916	broad.mit.edu	37	2	242035518	242035518	+	Missense_Mutation	SNP	A	C	C	rs10203977		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr2:242035518A>C	uc002wan.1	-	3	1621	c.1128T>G	c.(1126-1128)GAT>GAG	p.D376E	MTERFD2_uc010zoj.1_Missense_Mutation_p.D159E	NM_182501	NP_872307	Q7Z6M4	MTER2_HUMAN	MTERF domain containing 2	347										ovary(1)	1		all_cancers(19;4.67e-31)|all_epithelial(40;8.67e-13)|Breast(86;0.000141)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;2.47e-32)|all cancers(36;1.79e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-14)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;2.81e-06)|Lung(119;0.000509)|LUSC - Lung squamous cell carcinoma(224;0.00442)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0886)		tgtcctcctcatcatcgtcat	0.214000													22	28					0	0	0	0
SLC4A11	83959	broad.mit.edu	37	20	3211199	3211199	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr20:3211199G>A	uc002wig.2	-	11	1473	c.1425C>T	c.(1423-1425)GCC>GCT	p.A475A	SLC4A11_uc010zqe.1_Silent_p.A502A|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.A459A	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	475	Helical; (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						GGTTGAAAAAGGCATAAAGCG	0.532000													16	57					0	0	0	0
MCM8	84515	broad.mit.edu	37	20	5948561	5948561	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr20:5948561G>A	uc002wmi.2	+	10	1490	c.1113G>A	c.(1111-1113)AAG>AAA	p.K371K	MCM8_uc002wmj.2_Silent_p.K355K|MCM8_uc002wmk.2_Silent_p.K371K|MCM8_uc002wml.2_Silent_p.K371K|MCM8_uc010gbp.2_Silent_p.K371K|MCM8_uc002wmm.2_5'Flank	NM_032485	NP_115874	Q9UJA3	MCM8_HUMAN	minichromosome maintenance complex component 8	371					cell cycle checkpoint|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|nucleoside-triphosphatase activity			skin(1)	1						AGAAAACAAAGAGTTCTGAGG	0.343000													19	36					0	0	0	0
C20orf103	24141	broad.mit.edu	37	20	9510385	9510385	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr20:9510385C>T	uc002wni.1	+	6	990	c.761C>T	c.(760-762)GCG>GTG	p.A254V	C20orf103_uc010zrc.1_Missense_Mutation_p.A210V	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	254	Helical; (Potential).					integral to membrane		p.A254V(1)		upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			GTAACACTCGCGATTTACCAC	0.547000													7	39					0	0	0	0
ATP9A	10079	broad.mit.edu	37	20	50225128	50225128	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr20:50225128G>C	uc002xwg.1	-	25	2674	c.2674C>G	c.(2674-2676)CTG>GTG	p.L892V	ATP9A_uc010gih.1_Missense_Mutation_p.L756V|ATP9A_uc002xwf.1_Missense_Mutation_p.L64V	NM_006045	NP_006036	O75110	ATP9A_HUMAN	ATPase, class II, type 9A	892	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(4)	4						TCCAGGACCAGAGAAAACACA	0.448000													10	31					0	0	0	0
ITGB2	3689	broad.mit.edu	37	21	46320235	46320235	+	Silent	SNP	G	A	A	rs150327269		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr21:46320235G>A	uc002zgd.2	-	6	941	c.897C>T	c.(895-897)TTC>TTT	p.F299F	ITGB2_uc002zge.2_Silent_p.F299F|ITGB2_uc002zgf.3_Silent_p.F299F|ITGB2_uc011afl.1_Silent_p.F221F|ITGB2_uc010gpw.2_Silent_p.F242F|ITGB2_uc002zgg.2_Silent_p.F299F	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	299	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GGGGACTTACGAATTCGTTGC	0.637000													7	29					0	0	0	0
GGT3P	2679	broad.mit.edu	37	22	18778602	18778602	+	RNA	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr22:18778602G>A	uc011ago.1	-	2		c.218C>T			GGT3P_uc011agp.1_RNA|GGT3P_uc002zob.1_RNA					Homo sapiens cDNA clone IMAGE:5761295, **** WARNING: chimeric clone ****.												0						CTTGGCATCCGCGGCCACGGC	0.557000													4	16					0	0	0	0
TOP3B	8940	broad.mit.edu	37	22	22316888	22316888	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr22:22316888C>T	uc002zvs.2	-	13	1873	c.1438G>A	c.(1438-1440)GAG>AAG	p.E480K	TOP3B_uc010gtm.1_Missense_Mutation_p.E25K|TOP3B_uc002zvr.2_Missense_Mutation_p.E205K|TOP3B_uc010gtl.2_Missense_Mutation_p.E480K|TOP3B_uc002zvt.3_Missense_Mutation_p.E480K	NM_003935	NP_003926	O95985	TOP3B_HUMAN	topoisomerase (DNA) III beta	480					DNA topological change	nucleus	ATP binding|DNA topoisomerase type I activity|protein binding			kidney(1)	1	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.145)		ATCTTCACCTCGCCCACAGGG	0.637000													15	32					0	0	0	0
PRAME	23532	broad.mit.edu	37	22	22890816	22890816	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr22:22890816G>A	uc002zwf.2	-	5	1359	c.1203C>T	c.(1201-1203)TCC>TCT	p.S401S	LOC96610_uc011aim.1_Intron|PRAME_uc011air.1_Silent_p.S385S|PRAME_uc010gtr.2_Silent_p.S401S|PRAME_uc002zwg.2_Silent_p.S401S|PRAME_uc002zwh.2_Silent_p.S401S|PRAME_uc002zwi.2_Silent_p.S401S|PRAME_uc002zwj.2_Silent_p.S401S|PRAME_uc002zwk.2_Silent_p.S401S	NM_206956	NP_996839	P78395	PRAME_HUMAN	preferentially expressed antigen in melanoma	401					apoptosis|cell differentiation|negative regulation of apoptosis|negative regulation of cell differentiation|negative regulation of retinoic acid receptor signaling pathway|negative regulation of transcription, DNA-dependent|positive regulation of cell proliferation|regulation of growth|transcription, DNA-dependent	nucleus|plasma membrane	retinoic acid receptor binding			central_nervous_system(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)|all_lung(157;4.03e-05)		READ - Rectum adenocarcinoma(21;0.0649)		AGTGGCTCAGGGAAGGCAGGA	0.572000													8	47					0	0	0	0
TADA3	10474	broad.mit.edu	37	3	9822068	9822068	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr3:9822068C>G	uc003bsx.1	-	9	1820	c.1272G>C	c.(1270-1272)GAG>GAC	p.E424D	TADA3_uc010hcn.1_Missense_Mutation_p.E424D|TADA3_uc003bsw.1_Missense_Mutation_p.E253D	NM_006354	NP_006345	O75528	TADA3_HUMAN	transcriptional adaptor 3 isoform a	424					estrogen receptor signaling pathway|histone H3 acetylation|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter	Ada2/Gcn5/Ada3 transcription activator complex|STAGA complex|transcription factor TFTC complex	ligand-dependent nuclear receptor binding|protein domain specific binding|sequence-specific DNA binding transcription factor activity				0						TCAGGATGCTCTCACGCTCCT	0.587000													9	30					0	0	0	0
MLH1	4292	broad.mit.edu	37	3	37056031	37056031	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr3:37056031C>G	uc003cgl.2	+	9	846	c.786C>G	c.(784-786)ATC>ATG	p.I262M	MLH1_uc011aye.1_Missense_Mutation_p.I21M|MLH1_uc011ayb.1_Missense_Mutation_p.I21M|MLH1_uc010hge.2_Missense_Mutation_p.I262M|MLH1_uc003cgn.3_Missense_Mutation_p.I21M|MLH1_uc011ayc.1_Missense_Mutation_p.I164M|MLH1_uc011ayd.1_Missense_Mutation_p.I21M|MLH1_uc003cgo.2_Missense_Mutation_p.I21M|MLH1_uc010hgg.1_Translation_Start_Site|MLH1_uc010hgh.1_Intron|MLH1_uc010hgi.1_Translation_Start_Site|MLH1_uc010hgj.1_Intron|MLH1_uc010hgk.2_Translation_Start_Site|MLH1_uc010hgl.1_Translation_Start_Site	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	262			Missing (in HNPCC2).|Missing (in HNPCC2).		mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						TACTCTTCATCAACCGTAAGT	0.383000		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				10	25					0	0	0	0
CYP8B1	1582	broad.mit.edu	37	3	42915828	42915828	+	Missense_Mutation	SNP	C	T	T	rs145159025	by1000genomes	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr3:42915828C>T	uc003cmh.2	-	1	1806	c.1481G>A	c.(1480-1482)CGC>CAC	p.R494H	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	494					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CAGGCGGTAGCGGAAGCGCAC	0.582000													7	31					0	0	0	0
CCDC51	79714	broad.mit.edu	37	3	48476325	48476325	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr3:48476325G>A	uc003csz.2	-	2	335	c.214C>T	c.(214-216)CAG>TAG	p.Q72*	CCDC51_uc003cta.2_5'UTR|CCDC51_uc003ctb.2_5'UTR|CCDC51_uc003ctc.2_Nonsense_Mutation_p.Q72*|CCDC51_uc003ctd.2_5'UTR	NM_024661	NP_078937	Q96ER9	CCD51_HUMAN	coiled-coil domain containing 51	72						integral to membrane					0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GCTCGTTGCTGAATGCTGTGC	0.612000													16	59					0	0	0	0
COL7A1	1294	broad.mit.edu	37	3	48617463	48617463	+	Splice_Site	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr3:48617463C>A	uc003ctz.2	-	56	5125	c.5124_splice	c.e56+1	p.L1708_splice	MIR711_hsa-mir-711|MI0012488_5'Flank	NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor						cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GCAGCCCTTACCAGCCGTCCC	0.592000													10	29					0.00829132	0.00856052	1	0
C3orf30	152405	broad.mit.edu	37	3	118865966	118865966	+	Silent	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr3:118865966G>C	uc003ecb.1	+	1	970	c.930G>C	c.(928-930)GTG>GTC	p.V310V	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Silent_p.V310V	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	310										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		ACCACCAAGTGTACGGCCAAG	0.493000													7	33					0	0	0	0
GOLIM4	27333	broad.mit.edu	37	3	167742370	167742370	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr3:167742370G>C	uc003ffe.2	-	14	2148	c.1804C>G	c.(1804-1806)CCA>GCA	p.P602A	GOLIM4_uc011bpe.1_Missense_Mutation_p.P603A|GOLIM4_uc011bpf.1_Missense_Mutation_p.P575A|GOLIM4_uc011bpg.1_Missense_Mutation_p.P574A	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	602	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						TGCTGGTCTGGATTTCCTGCC	0.463000													6	28					0	0	0	0
GBA3	57733	broad.mit.edu	37	4	22820400	22820400	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr4:22820400A>T	uc003gqp.3	+	5	1355	c.1264A>T	c.(1264-1266)AAC>TAC	p.N422Y	GBA3_uc010iep.2_Missense_Mutation_p.N115Y|GBA3_uc011bxo.1_Missense_Mutation_p.N423Y	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	422					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TCTTCTGGATAACTTTGAGTG	0.423000													3	19					0	0	0	0
CHRNA9	55584	broad.mit.edu	37	4	40339349	40339349	+	Silent	SNP	C	T	T	rs148584579	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr4:40339349C>T	uc003gva.1	+	3	349	c.333C>T	c.(331-333)CTC>CTT	p.L111L		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	111	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	CCAGTGACCTCGTGTGGAGGC	0.468000													8	23					0	0	0	0
FAT4	79633	broad.mit.edu	37	4	126241794	126241794	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr4:126241794G>A	uc003ifj.3	+	1	4228	c.4228G>A	c.(4228-4230)GTG>ATG	p.V1410M		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1410	Cadherin 13.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GGTTATTCACGTGAGGGACTT	0.383000													25	100					0	0	0	0
PLCXD3	345557	broad.mit.edu	37	5	41382584	41382584	+	Silent	SNP	A	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr5:41382584A>G	uc003jmm.1	-	2	258	c.156T>C	c.(154-156)CCT>CCC	p.P52P		NM_001005473	NP_001005473	Q63HM9	PLCX3_HUMAN	phosphatidylinositol-specific phospholipase C, X	52	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(2)|urinary_tract(1)|ovary(1)|lung(1)|central_nervous_system(1)	6						CTGGCTGCTCAGGACCTACTG	0.448000													8	52					0	0	0	0
THBS4	7060	broad.mit.edu	37	5	79336023	79336023	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr5:79336023C>T	uc003kgh.2	+	3	535	c.212C>T	c.(211-213)TCA>TTA	p.S71L		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	71	TSP N-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		ACTAAAAGTTCAGCCACCATC	0.443000													11	31					0	0	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181874	140181874	+	Silent	SNP	A	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr5:140181874A>T	uc003lhf.2	+	1	1092	c.1092A>T	c.(1090-1092)CCA>CCT	p.P364P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.P364P	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	364	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGACTCTCCACTTAGCACAG	0.488000													24	58					0	0	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263705	140263705	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr5:140263705G>A	uc003lif.2	+	1	1852	c.1852G>A	c.(1852-1854)GCG>ACG	p.A618T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.A618T|PCDHA13_uc003lid.2_Missense_Mutation_p.A618T	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	618	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGGTCGGCGCGCGCATCCC	0.687000													25	48					0	0	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558774	140558774	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr5:140558774C>T	uc011dai.1	+	1	1345	c.1159C>T	c.(1159-1161)CAG>TAG	p.Q387*	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	387	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTGCTCCATTCAGGAGGATCT	0.458000													15	135					0	0	0	0
KIF4B	285643	broad.mit.edu	37	5	154395571	154395571	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr5:154395571C>T	uc010jih.1	+	1	2312	c.2152C>T	c.(2152-2154)CTC>TTC	p.L718F		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	718	Interaction with PRC1 (By similarity).|Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			CAAGGATGCTCTCCAGAAACA	0.473000													13	33					0	0	0	0
GPRIN1	114787	broad.mit.edu	37	5	176025296	176025296	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr5:176025296C>T	uc003meo.1	-	2	1715	c.1540G>A	c.(1540-1542)GCG>ACG	p.A514T		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	514						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCCCCGTCGCTGGCTCAGCC	0.627000													12	34					0	0	0	0
DPCR1	135656	broad.mit.edu	37	6	30919701	30919701	+	Silent	SNP	T	C	C	rs114468580	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr6:30919701T>C	uc003nsg.2	+	2	3460	c.3460T>C	c.(3460-3462)TTG>CTG	p.L1154L		NM_080870	NP_543146	Q3MIW9	DPCR1_HUMAN	diffuse panbronchiolitis critical region 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane					0						AAGGACCACATTGGCCCATGA	0.473000													3	18					0	0	0	0
HLA-C	3107	broad.mit.edu	37	6	31239382	31239382	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr6:31239382C>A	uc003nsy.2	-	2	344	c.337G>T	c.(337-339)GAG>TAG	p.E113*	HLA-C_uc011dnj.1_Nonsense_Mutation_p.E85*|HLA-C_uc003nsx.2_5'UTR|HLA-C_uc003nsz.2_Nonsense_Mutation_p.E113*|HLA-C_uc010jsl.2_Nonsense_Mutation_p.E113*|HLA-C_uc003nta.2_Nonsense_Mutation_p.E113*|HLA-C_uc003ntb.2_Intron|HLA-C_uc003ntc.1_Intron|HLA-B_uc010jsm.1_Intron|HLA-B_uc011dnk.1_Intron|HLA-C_uc011dnl.1_5'UTR|HLA-B_uc003ntf.2_Intron	NM_002117	NP_002108	Q9TNN7	1C05_HUMAN	major histocompatibility complex, class I, C	113	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex					0						TCACCGTCCTCGCTCTGGTTG	0.692000													5	20					1.23904e-05	1.34019e-05	1	0
POU3F2	5454	broad.mit.edu	37	6	99283616	99283616	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr6:99283616G>A	uc003ppe.2	+	1	1037	c.867G>A	c.(865-867)GCG>GCA	p.A289A		NM_005604	NP_005595	P20265	PO3F2_HUMAN	POU domain, class 3, transcription factor 2	289	POU-specific.				positive regulation of cell proliferation		identical protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0355)		TTACCCAAGCGGACGTGGGGC	0.607000													39	153					0	0	0	0
LIN28B	389421	broad.mit.edu	37	6	105474273	105474273	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr6:105474273C>G	uc003pqv.1	+	3	502	c.299C>G	c.(298-300)ACA>AGA	p.T100R	LIN28B_uc010kda.1_Missense_Mutation_p.T60R	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	100	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				ATACGGGTAACAGGACCTGGT	0.403000													21	87					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152674420	152674420	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr6:152674420C>T	uc010kiw.2	-	69	11833	c.11231G>A	c.(11230-11232)GGG>GAG	p.G3744E	SYNE1_uc003qot.3_Missense_Mutation_p.G3729E|SYNE1_uc003qou.3_Missense_Mutation_p.G3744E|SYNE1_uc010kja.1_Missense_Mutation_p.G449E	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3744	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAATTTCTTCCCCATCATTAC	0.423000										HNSCC(10;0.0054)			38	149					0	0	0	0
SYNJ2	8871	broad.mit.edu	37	6	158449945	158449945	+	Silent	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr6:158449945C>G	uc003qqx.1	+	3	447	c.372C>G	c.(370-372)CTC>CTG	p.L124L	SYNJ2_uc011efm.1_RNA|SYNJ2_uc003qqw.1_Silent_p.L124L|SYNJ2_uc003qqy.1_5'UTR|SYNJ2_uc011efn.1_Silent_p.L73L|SYNJ2_uc010kjo.1_Silent_p.L73L	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	124	SAC.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		AGAAAATCCTCAGCTCGGGGG	0.512000													12	29					0	0	0	0
DGKB	1607	broad.mit.edu	37	7	14758228	14758228	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr7:14758228C>T	uc003ssz.2	-	5	592	c.405G>A	c.(403-405)CTG>CTA	p.L135L	DGKB_uc011jxt.1_Silent_p.L128L|DGKB_uc003sta.2_Silent_p.L135L|DGKB_uc011jxu.1_Silent_p.L135L|DGKB_uc011jxv.1_Silent_p.L135L	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	135					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	CAATGTCCTTCAGATGGATTA	0.428000													11	25					0	0	0	0
PMS2L11	441263	broad.mit.edu	37	7	76610473	76610473	+	RNA	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr7:76610473C>T	uc003ufw.3	+	1		c.335C>T			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						ACGCCTGGGACGCAGCTCCTC	0.667000													18	46					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88963052	88963052	+	Silent	SNP	C	G	G	rs34688143		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr7:88963052C>G	uc011khi.1	+	4	1294	c.756C>G	c.(754-756)CCC>CCG	p.P252P		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	252						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			ACAAGTCACCCATTTATAAAA	0.343000										HNSCC(36;0.09)			7	36					0	0	0	0
DOCK4	9732	broad.mit.edu	37	7	111368497	111368497	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr7:111368497G>A	uc003vfx.2	-	52	6003	c.5734C>T	c.(5734-5736)CGC>TGC	p.R1912C	DOCK4_uc011kml.1_Missense_Mutation_p.R793C|DOCK4_uc011kmm.1_Missense_Mutation_p.R781C|DOCK4_uc003vfw.2_Missense_Mutation_p.R1324C|DOCK4_uc003vfy.2_Missense_Mutation_p.R1957C|DOCK4_uc003vfv.2_Missense_Mutation_p.R225C	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1912	Pro-rich.				cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GGGACGGGGCGCCGCAGAGTC	0.716000													13	34					0	0	0	0
PRSS1	5644	broad.mit.edu	37	7	142458445	142458445	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr7:142458445G>A	uc003wak.2	+	2	97	c.80G>A	c.(79-81)GGC>GAC	p.G27D	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	27	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ATCGTTGGGGGCTACAACTGT	0.537000									Hereditary_Pancreatitis				21	153					0	0	0	0
TRY6	154754	broad.mit.edu	37	7	142479948	142479948	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr7:142479948G>A	uc011ksq.1	+	2	163	c.80G>A	c.(79-81)GGC>GAC	p.G27D	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						ATCGTTGGGGGCTACACCTGT	0.552000													14	88					0	0	0	0
TMEM176B	28959	broad.mit.edu	37	7	150490279	150490279	+	Missense_Mutation	SNP	C	T	T	rs144557912		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr7:150490279C>T	uc003wht.3	-	5	663	c.497G>A	c.(496-498)CGC>CAC	p.R166H	TMEM176B_uc003whu.3_Missense_Mutation_p.R166H|TMEM176B_uc003whv.3_Missense_Mutation_p.R129H|TMEM176B_uc003whw.3_Missense_Mutation_p.R166H	NM_001101313	NP_001094783	Q3YBM2	T176B_HUMAN	transmembrane protein 176B isoform a	166					cell differentiation|organ morphogenesis	integral to membrane|nuclear membrane				ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AGGGTCTGAGCGATCACACAC	0.507000													11	48					0	0	0	0
NCOA2	10499	broad.mit.edu	37	8	71071826	71071826	+	Silent	SNP	A	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr8:71071826A>G	uc003xyn.1	-	10	1200	c.1038T>C	c.(1036-1038)CTT>CTC	p.L346L		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	346					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			GTGCAGCAACAAGAGTGCCAT	0.408000			T	RUNXBP2	AML								21	47					0	0	0	0
INTS8	55656	broad.mit.edu	37	8	95866050	95866050	+	Silent	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr8:95866050C>G	uc003yhb.2	+	14	1785	c.1659C>G	c.(1657-1659)GTC>GTG	p.V553V	INTS8_uc003yha.1_Silent_p.V553V|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Silent_p.V380V	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	553					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TACCTTCTGTCTATAGTGGTG	0.333000													18	64					0	0	0	0
UBR5	51366	broad.mit.edu	37	8	103317373	103317373	+	Silent	SNP	A	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr8:103317373A>G	uc003ykr.1	-	21	2800	c.2767T>C	c.(2767-2769)TTG>CTG	p.L923L	UBR5_uc003yks.1_Silent_p.L923L	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	923					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			CAAGCATGCAAAATATTTCGA	0.373000													25	104					0	0	0	0
NAPRT1	93100	broad.mit.edu	37	8	144659308	144659308	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr8:144659308C>T	uc003yym.3	-	5	633	c.608G>A	c.(607-609)CGA>CAA	p.R203Q	NAPRT1_uc003yyn.3_Missense_Mutation_p.R203Q|NAPRT1_uc011lkh.1_Missense_Mutation_p.R203Q|NAPRT1_uc003yyo.3_Missense_Mutation_p.R203Q	NM_145201	NP_660202	Q6XQN6	PNCB_HUMAN	nicotinate phosphoribosyltransferase domain	203					nicotinamide metabolic process|nicotinate nucleotide salvage|response to oxidative stress|water-soluble vitamin metabolic process	cytosol|Golgi apparatus|nucleus	nicotinate phosphoribosyltransferase activity|nicotinate-nucleotide diphosphorylase (carboxylating) activity			ovary(1)	1	all_cancers(97;6.49e-11)|all_epithelial(106;4.73e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.014)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.134)|BRCA - Breast invasive adenocarcinoma(115;0.146)			CGGCACACCTCGCAGCTGGCC	0.677000													6	20					0	0	0	0
ZDHHC21	340481	broad.mit.edu	37	9	14674243	14674243	+	Silent	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr9:14674243G>T	uc003zli.2	-	4	566	c.96C>A	c.(94-96)CCC>CCA	p.P32P	ZDHHC21_uc003zlg.1_Intron	NM_178566	NP_848661	Q8IVQ6	ZDH21_HUMAN	zinc finger, DHHC-type containing 21	32	Helical; (Potential).				nitric oxide metabolic process|regulation of nitric-oxide synthase activity	Golgi membrane|integral to membrane	palmitoyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(50;4.31e-06)		GGACAATTTTGGGAATTAAAA	0.333000													12	198					0.000151284	0.000160362	1	0
FREM1	158326	broad.mit.edu	37	9	14740170	14740170	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr9:14740170C>G	uc003zlm.2	-	36	6907	c.6317G>C	c.(6316-6318)GGT>GCT	p.G2106A	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.G642A	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	2106	C-type lectin.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTTTCTCCCACCAATGTCCCA	0.502000													11	162					0	0	0	0
UNC13B	10497	broad.mit.edu	37	9	35310565	35310565	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr9:35310565G>A	uc003zwq.2	+	9	1155	c.863G>A	c.(862-864)CGG>CAG	p.R288Q	UNC13B_uc010mkl.1_Missense_Mutation_p.R288Q|UNC13B_uc003zwr.2_Missense_Mutation_p.R288Q	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	288					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GACGACCATCGGGAGACGGAC	0.517000													40	218					0	0	0	0
TRPM3	80036	broad.mit.edu	37	9	73151732	73151732	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr9:73151732C>A	uc004aid.2	-	25	4505	c.4261G>T	c.(4261-4263)GTG>TTG	p.V1421L	TRPM3_uc004ahu.2_Missense_Mutation_p.V1263L|TRPM3_uc004ahv.2_Missense_Mutation_p.V1223L|TRPM3_uc004ahw.2_Missense_Mutation_p.V1293L|TRPM3_uc004ahx.2_Missense_Mutation_p.V1280L|TRPM3_uc004ahy.2_Missense_Mutation_p.V1283L|TRPM3_uc004ahz.2_Missense_Mutation_p.V1270L|TRPM3_uc004aia.2_Missense_Mutation_p.V1268L|TRPM3_uc004aib.2_Missense_Mutation_p.V1258L|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1446	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						AGGATGTTCACGGAATTGTCC	0.502000													13	55					2.61681e-11	3.08203e-11	1	0
Unknown	0	broad.mit.edu	37	9	78848501	78848501	+	IGR	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr9:78848501C>A								PCSK5 (40163 upstream) : RFK (151932 downstream)																							CACTGCACCTCCTGTGGAGCA	0.532000													11	54					3.07112e-06	3.39103e-06	1	0
MAN1B1	11253	broad.mit.edu	37	9	139994165	139994165	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr9:139994165C>T	uc004cld.2	+	6	783	c.748C>T	c.(748-750)CAG>TAG	p.Q250*	MAN1B1_uc004clc.2_Nonsense_Mutation_p.Q151*|MAN1B1_uc011meo.1_Nonsense_Mutation_p.Q151*|MAN1B1_uc011mep.1_Nonsense_Mutation_p.Q250*|MAN1B1_uc010ncc.2_RNA	NM_016219	NP_057303	Q9UKM7	MA1B1_HUMAN	alpha 1,2-mannosidase	250	Lumenal (Potential).				oligosaccharide metabolic process|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|endoplasmic reticulum quality control compartment|integral to membrane	alpha-mannosidase activity|calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(1)|central_nervous_system(1)	2	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.0878)	OV - Ovarian serous cystadenocarcinoma(145;3.08e-05)|Epithelial(140;0.000513)		GAACTATCGCCAGAAGGGCGT	0.582000													50	49					0	0	0	0
FAM47B	170062	broad.mit.edu	37	X	34962243	34962243	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:34962243C>A	uc004ddi.1	+	1	1313	c.1295C>A	c.(1294-1296)GCG>GAG	p.A432E		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	432										ovary(3)|breast(1)	4						AAGACCGGAGCGTCCCATCTA	0.527000													21	58					6.44725e-10	7.48258e-10	1	0
SRPX	8406	broad.mit.edu	37	X	38009017	38009017	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:38009017T>C	uc004ddy.1	-	10	1428	c.1342A>G	c.(1342-1344)AGA>GGA	p.R448G	SRPX_uc004ddz.1_Missense_Mutation_p.R428G|SRPX_uc011mkh.1_Missense_Mutation_p.R389G|SRPX_uc011mki.1_3'UTR	NM_006307	NP_006298	P78539	SRPX_HUMAN	sushi-repeat-containing protein, X-linked	448					cell adhesion	cell surface|membrane					0						TCTTCTTTTCTCAAGGGAAAA	0.478000													4	32					0	0	0	0
DGKK	139189	broad.mit.edu	37	X	50213157	50213157	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:50213157C>T	uc010njr.1	-	1	581	c.521G>A	c.(520-522)CGT>CAT	p.R174H		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	174	33 X 4 AA approximate tandem repeats of E-P-A-P.|32.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					TGGACTTGGACGGAACTCTGG	0.358000													3	21					0	0	0	0
Unknown	0	broad.mit.edu	37	X	51150988	51150988	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:51150988A>G	uc004dpj.2	+	1	1222	c.1120A>G	c.(1120-1122)ACT>GCT	p.T374A		NM_203407	NP_981952			hypothetical protein LOC340602																		TTCCTGTGGGACTGGCTCAGA	0.607000													8	31					0	0	0	0
HUWE1	10075	broad.mit.edu	37	X	53613475	53613475	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:53613475G>C	uc004dsp.2	-	39	5201	c.4799C>G	c.(4798-4800)TCA>TGA	p.S1600*	HUWE1_uc004dsn.2_Nonsense_Mutation_p.S425*	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1600					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TCTCCTTTTTGAGGAGATGGC	0.423000													3	14					0	0	0	0
HUWE1	10075	broad.mit.edu	37	X	53620464	53620464	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:53620464C>T	uc004dsp.2	-	32	4003	c.3601G>A	c.(3601-3603)GCC>ACC	p.A1201T	HUWE1_uc004dsn.2_Missense_Mutation_p.A26T	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1201					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						ATAAGCCAGGCATCTAGGAAT	0.507000													3	27					0	0	0	0
USP51	158880	broad.mit.edu	37	X	55513554	55513554	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:55513554G>A	uc004dun.1	-	2	1898	c.1819C>T	c.(1819-1821)CGA>TGA	p.R607*	USP51_uc011moo.1_Nonsense_Mutation_p.R311*	NM_201286	NP_958443	Q70EK9	UBP51_HUMAN	ubiquitin specific protease 51	607					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3						TTAATCTTTCGCCTCTGTTTG	0.443000													3	45					0	0	0	0
UPRT	139596	broad.mit.edu	37	X	74494381	74494381	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:74494381G>C	uc004ecb.1	+	1	421	c.292G>C	c.(292-294)GAG>CAG	p.E98Q	UPRT_uc010nlu.1_Missense_Mutation_p.E98Q|UPRT_uc004ecc.1_RNA|UPRT_uc004ecd.1_Missense_Mutation_p.E98Q|UPRT_uc004ece.1_5'Flank	NM_145052	NP_659489	Q96BW1	UPP_HUMAN	uracil phosphoribosyltransferase (FUR1) homolog	98					nucleoside metabolic process	cytoplasm|nucleus					0						CTCCTTCCTAGAGGACTGCGA	0.582000													2	18					0	0	0	0
ZDHHC15	158866	broad.mit.edu	37	X	74742782	74742782	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:74742782G>A	uc004ecg.2	-	1	556	c.78C>T	c.(76-78)CTC>CTT	p.L26L	ZDHHC15_uc004ech.2_Silent_p.L26L|ZDHHC15_uc011mqo.1_RNA|ZDHHC15_uc004eci.2_Silent_p.L26L	NM_144969	NP_659406	Q96MV8	ZDH15_HUMAN	zinc finger, DHHC-type containing 15 isoform 1	26	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(2)	2						GGACAATAACGAGCACTGGCA	0.587000													4	31					0	0	0	0
ATP7A	538	broad.mit.edu	37	X	77245124	77245124	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:77245124G>A	uc004ecx.3	+	4	1166	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K	ATP7A_uc004ecw.2_Missense_Mutation_p.E336K	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	336	HMA 3.|Cytoplasmic (Potential).			E -> V (in Ref. 1; AAA35580 and 8; AAA96010).	ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						AAAAGCAATAGAGGCTGTATC	0.418000													78	131					0	0	0	0
NXF3	56000	broad.mit.edu	37	X	102337277	102337277	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:102337277C>T	uc004eju.2	-	9	867	c.796G>A	c.(796-798)GAG>AAG	p.E266K	NXF3_uc010noi.1_Missense_Mutation_p.E116K|NXF3_uc011mrw.1_Missense_Mutation_p.E266K|NXF3_uc011mrx.1_Missense_Mutation_p.E177K	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	266						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TTGTCCATCTCCCCTGCAGAC	0.542000													13	112					0	0	0	0
BCORL1	63035	broad.mit.edu	37	X	129149172	129149172	+	Silent	SNP	G	A	A	rs138691600	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:129149172G>A	uc004evb.1	+	4	2538	c.2424G>A	c.(2422-2424)ACG>ACA	p.T808T	BCORL1_uc010nrd.1_Silent_p.T710T	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	808					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						GGAAACCCACGGGGCCGGCAA	0.587000													9	71					0	0	0	0
SLITRK2	84631	broad.mit.edu	37	X	144904556	144904556	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:144904556A>T	uc004fcd.2	+	5	1603	c.613A>T	c.(613-615)ATT>TTT	p.I205F	SLITRK2_uc010nsp.2_Missense_Mutation_p.I205F|SLITRK2_uc010nso.2_Missense_Mutation_p.I205F|SLITRK2_uc011mwq.1_Missense_Mutation_p.I205F|SLITRK2_uc011mwr.1_Missense_Mutation_p.I205F|SLITRK2_uc011mws.1_Missense_Mutation_p.I205F|SLITRK2_uc004fcg.2_Missense_Mutation_p.I205F|SLITRK2_uc011mwt.1_Missense_Mutation_p.I205F	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	205	Extracellular (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					CCTTGAACATATTGGAGGGAT	0.473000													19	128					0	0	0	0
BAI2	576	broad.mit.edu	37	1	32193839	32193839	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:32193839C>T	uc001btn.2	-	31	4813	c.4459G>A	c.(4459-4461)GAG>AAG	p.E1487K	BAI2_uc001btm.2_Missense_Mutation_p.E481K|BAI2_uc001btp.1_Missense_Mutation_p.E481K|BAI2_uc010ogn.1_Missense_Mutation_p.E457K|BAI2_uc010ogo.1_Missense_Mutation_p.E1096K|BAI2_uc010ogp.1_Missense_Mutation_p.E1420K|BAI2_uc010ogq.1_Missense_Mutation_p.E1453K|BAI2_uc001bto.2_Missense_Mutation_p.E1486K	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	1487	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		TGGTTGAGCTCGTGGTAGAGT	0.637000													6	26					0	0	0	0
IPP	3652	broad.mit.edu	37	1	46206708	46206708	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:46206708C>T	uc001cou.2	-	3	856	c.589G>A	c.(589-591)GAA>AAA	p.E197K	IPP_uc001cos.3_Missense_Mutation_p.E197K	NM_005897	NP_005888	Q9Y573	IPP_HUMAN	intracisternal A particle-promoted polypeptide	197						actin cytoskeleton|cytoplasm	actin binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					ACCTGGTATTCATCCTCAATG	0.413000													23	61					0	0	0	0
CLK2	1196	broad.mit.edu	37	1	155234031	155234031	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:155234031G>A	uc001fjy.2	-	11	1497	c.1207C>T	c.(1207-1209)CGG>TGG	p.R403W	RAG1AP1_uc010pey.1_Intron|SCAMP3_uc001fjs.2_5'Flank|SCAMP3_uc001fju.2_5'Flank|SCAMP3_uc001fjv.2_5'Flank|SCAMP3_uc001fjt.2_5'Flank|CLK2_uc001fjw.2_Missense_Mutation_p.R402W|CLK2_uc001fjx.2_Missense_Mutation_p.R175W|CLK2_uc009wqm.2_Missense_Mutation_p.R403W	NM_003993	NP_003984	P49760	CLK2_HUMAN	CDC-like kinase 2	403	Protein kinase.					nucleus	ATP binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0	all_lung(78;2.32e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			CGGATCATCCGGGAAGGGATA	0.443000								Other_conserved_DNA_damage_response_genes					16	48					0	0	0	0
SPTA1	6708	broad.mit.edu	37	1	158631136	158631136	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:158631136G>A	uc001fst.1	-	18	2727	c.2528C>T	c.(2527-2529)GCC>GTC	p.A843V		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	843	Spectrin 9.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TTCATGGCTGGCAATGTTCTC	0.423000													4	81					0	0	0	0
SPTA1	6708	broad.mit.edu	37	1	158655086	158655086	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:158655086C>T	uc001fst.1	-	2	275	c.76G>A	c.(76-78)GAG>AAG	p.E26K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	26	Spectrin 1.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TGACGCCTCTCCTGGATCTCT	0.353000													22	74					0	0	0	0
TBX19	9095	broad.mit.edu	37	1	168274332	168274332	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:168274332G>T	uc001gfl.2	+	6	865	c.814G>T	c.(814-816)GCT>TCT	p.A272S	TBX19_uc001gfj.3_Intron|TBX19_uc001gfm.2_5'UTR	NM_005149	NP_005140	O60806	TBX19_HUMAN	T-box 19	272					anatomical structure morphogenesis	nucleus	DNA binding				0	all_hematologic(923;0.215)					GCCTCTGCCTGCTCCCCACAC	0.552000													22	54					7.41877e-09	8.56012e-09	1	0
NPHS2	7827	broad.mit.edu	37	1	179544754	179544754	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:179544754C>T	uc001gmq.3	-	1	331	c.246G>A	c.(244-246)GCG>GCA	p.A82A	NPHS2_uc009wxi.2_Silent_p.A82A	NM_014625	NP_055440	Q9NP85	PODO_HUMAN	podocin	82	Cytoplasmic (Potential).				excretion	integral to plasma membrane	protein binding				0						TCTCCAACAGCGCCACCACCT	0.672000													7	15					0	0	0	0
CACNA1S	779	broad.mit.edu	37	1	201022706	201022706	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:201022706C>T	uc001gvv.2	-	30	3903	c.3676G>A	c.(3676-3678)GAG>AAG	p.E1226K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1226	IV.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CGGGCACTCTCATCTGGGTCC	0.642000													3	35					0	0	0	0
Unknown	0	broad.mit.edu	37	10	52390227	52390227	+	RNA	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr10:52390227C>A	uc001jjf.1	+	2		c.920C>A								Homo sapiens cDNA FLJ12320 fis, clone MAMMA1002082.																		TGTTGTCTAGCAGATAAGATT	0.383000													3	8					0.004672	0.0048331	1	0
SORCS3	22986	broad.mit.edu	37	10	106937929	106937929	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr10:106937929G>T	uc001kyi.1	+	14	2234	c.2007G>T	c.(2005-2007)ATG>ATT	p.M669I	SORCS3_uc010qqz.1_Intron	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	669	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CCCACATCATGACGTGAGTAC	0.493000													4	34					0.00024832	0.00025987	1	0
ABCC8	6833	broad.mit.edu	37	11	17428629	17428629	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr11:17428629G>A	uc001mnc.2	-	25	3094	c.2968C>T	c.(2968-2970)CAC>TAC	p.H990Y		NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	990	Cytoplasmic (By similarity).				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GCACGCTGGTGCAGCATGGAC	0.562000													8	23					0	0	0	0
CELF1	10658	broad.mit.edu	37	11	47504267	47504267	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr11:47504267G>T	uc001nfl.2	-	6	677	c.667C>A	c.(667-669)CTT>ATT	p.L223I	CELF1_uc001nfm.2_Missense_Mutation_p.L223I|CELF1_uc001nfn.2_Missense_Mutation_p.L223I|CELF1_uc001nfo.1_Missense_Mutation_p.L249I|CELF1_uc010rhm.1_Missense_Mutation_p.L222I|CELF1_uc001nfp.2_Missense_Mutation_p.L250I|CELF1_uc001nfq.1_Missense_Mutation_p.L223I|CELF1_uc001nfr.1_Missense_Mutation_p.L223I	NM_001025596	NP_001020767	Q92879	CELF1_HUMAN	CUG triplet repeat, RNA-binding protein 1	223					embryo development|mRNA splice site selection|regulation of RNA splicing|RNA interference	cytoplasm|nucleus|ribonucleoprotein complex	BRE binding|mRNA binding|nucleotide binding|translation repressor activity, nucleic acid binding			central_nervous_system(2)|ovary(1)	3						TGGGGTCCAAGAGTATTTAGA	0.502000													10	33					3.07112e-06	3.41235e-06	1	0
MTNR1B	4544	broad.mit.edu	37	11	92715442	92715442	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr11:92715442C>T	uc001pdk.1	+	2	1156	c.1053C>T	c.(1051-1053)CCC>CCT	p.P351P		NM_005959	NP_005950	P49286	MTR1B_HUMAN	melatonin receptor 1B	351	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|glucose homeostasis|regulation of insulin secretion|synaptic transmission	integral to plasma membrane	melatonin receptor activity			ovary(1)|central_nervous_system(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)			Ramelteon(DB00980)	CAGCTCCACCCATCATTGGTG	0.567000													9	53					0	0	0	0
CASP4	837	broad.mit.edu	37	11	104820329	104820329	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr11:104820329C>T	uc001pid.1	-	5	795	c.722G>A	c.(721-723)CGC>CAC	p.R241H	CASP4_uc001pib.1_Missense_Mutation_p.R185H|CASP4_uc009yxg.1_Missense_Mutation_p.R150H|CASP4_uc010rux.1_Missense_Mutation_p.R241H	NM_001225	NP_001216	P49662	CASP4_HUMAN	caspase 4 isoform alpha precursor	241					apoptosis|induction of apoptosis|proteolysis	intracellular	cysteine-type endopeptidase activity|protein binding			lung(2)|ovary(1)|skin(1)	4		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Melanoma(852;0.0047)		BRCA - Breast invasive adenocarcinoma(274;0.000854)|Epithelial(105;0.00879)|all cancers(92;0.0357)		GAGGCAGTTGCGGTTGTTGAA	0.473000													14	77					0	0	0	0
HTR3B	9177	broad.mit.edu	37	11	113803665	113803665	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr11:113803665C>T	uc001pok.2	+	6	613	c.546C>T	c.(544-546)GAC>GAT	p.D182D	HTR3B_uc001pol.2_Silent_p.D171D	NM_006028	NP_006019	O95264	5HT3B_HUMAN	5-hydroxytryptamine (serotonin) receptor 3B	182	Extracellular (Potential).				synaptic transmission	integral to plasma membrane|postsynaptic membrane	serotonin receptor activity|serotonin-activated cation-selective channel activity				0		all_cancers(61;6.81e-18)|all_epithelial(67;6.67e-11)|all_hematologic(158;4.67e-05)|Melanoma(852;0.000316)|Acute lymphoblastic leukemia(157;0.000976)|Breast(348;0.0101)|Prostate(24;0.0154)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		BRCA - Breast invasive adenocarcinoma(274;3.04e-06)|Epithelial(105;1.98e-05)|all cancers(92;0.000201)|OV - Ovarian serous cystadenocarcinoma(223;0.151)		CAGTGGAAGACGTAGACCTGG	0.463000													3	51					0	0	0	0
CSAD	51380	broad.mit.edu	37	12	53554091	53554091	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr12:53554091G>A	uc001sby.2	-	13	1105	c.979C>T	c.(979-981)CGC>TGC	p.R327C	CSAD_uc001sbw.2_Missense_Mutation_p.R180C|CSAD_uc009zmt.2_Missense_Mutation_p.R109C|CSAD_uc010snx.1_Missense_Mutation_p.R354C|CSAD_uc001sbz.2_Missense_Mutation_p.R327C|CSAD_uc009zmu.2_Missense_Mutation_p.R180C|CSAD_uc001sca.3_RNA	NM_015989	NP_057073	Q9Y600	CSAD_HUMAN	cysteine sulfinic acid decarboxylase	327					carboxylic acid metabolic process		pyridoxal phosphate binding|sulfinoalanine decarboxylase activity			ovary(1)	1					L-Cysteine(DB00151)|Pyridoxal Phosphate(DB00114)	CCATGGCAGCGCTTGAGCAGG	0.602000									Hereditary_Prostate_Cancer				3	37					0	0	0	0
Unknown	0	broad.mit.edu	37	12	63359160	63359160	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr12:63359160C>T	uc001srn.1	+	1	61	c.56C>T	c.(55-57)CCT>CTT	p.P19L						SubName: Full=Putative uncharacterized protein RPL14P1;																		TCCTTTGGACCTCATGCCGGA	0.507000													5	48					0	0	0	0
OSBPL8	114882	broad.mit.edu	37	12	76763056	76763056	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr12:76763056C>T	uc001sye.1	-	21	2746	c.2266G>A	c.(2266-2268)GAT>AAT	p.D756N	OSBPL8_uc001syf.1_Missense_Mutation_p.D714N|OSBPL8_uc001syg.1_Missense_Mutation_p.D714N	NM_020841	NP_065892	Q9BZF1	OSBL8_HUMAN	oxysterol-binding protein-like protein 8 isoform	756					lipid transport		lipid binding			ovary(1)	1						TGTATCATATCATTAAGTGGG	0.303000													8	42					0	0	0	0
PCDH17	27253	broad.mit.edu	37	13	58207860	58207860	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr13:58207860G>A	uc001vhq.1	+	1	2072	c.1180G>A	c.(1180-1182)GGA>AGA	p.G394R	PCDH17_uc010aec.1_Missense_Mutation_p.G394R	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	394	Extracellular (Potential).|Gly-rich.|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		GGTCCTAGGCGGAGGAGGGAc	0.527000													4	6					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106322248	106322248	+	RNA	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr14:106322248C>T	uc010tyt.1	-	3598		c.55238G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysj.2_Intron|uc001ysk.1_Intron|uc001ysl.1_Intron|uc001ysm.1_Intron|uc001ysn.1_Intron|uc001yso.1_Intron					Parts of antibodies, mostly variable regions.												0						AGGCAGCCAACGGCCACGCTG	0.577000													7	9					0	0	0	0
Unknown	0	broad.mit.edu	37	15	29092219	29092219	+	Silent	SNP	C	T	T	rs141516940	by1000genomes	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr15:29092219C>T	uc010uar.1	-	2	297	c.168G>A	c.(166-168)TCG>TCA	p.S56S						SubName: Full=cDNA FLJ59069, weakly similar to Golgin subfamily A member 6;																		CATCCTCAGGCGAGTGGCAGC	0.552000													3	8					0	0	0	0
ARHGAP11B	89839	broad.mit.edu	37	15	30938316	30938316	+	Splice_Site	SNP	G	A	A	rs112615235	by1000genomes	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr15:30938316G>A	uc010azv.1	+	11		c.1127_splice	c.e11-1		ARHGAP11B_uc001zeu.2_Splice_Site			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		TTCCTTGGCAGTGGATAAGTT	0.393000													3	22					0	0	0	0
NEDD4	4734	broad.mit.edu	37	15	56134138	56134138	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr15:56134138G>A	uc002adj.2	-	15	3389	c.3089C>T	c.(3088-3090)TCT>TTT	p.S1030F	NEDD4_uc002adl.2_Missense_Mutation_p.S611F|NEDD4_uc002adi.2_Missense_Mutation_p.S958F|NEDD4_uc010ugj.1_Missense_Mutation_p.S1014F|NEDD4_uc010bfm.2_Missense_Mutation_p.S1013F|NEDD4_uc002adk.2_RNA	NM_198400	NP_006145	P46934	NEDD4_HUMAN	neural precursor cell expressed, developmentally	1030	HECT.				development involved in symbiotic interaction|glucocorticoid receptor signaling pathway|negative regulation of sodium ion transport|negative regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage|negative regulation of vascular endothelial growth factor receptor signaling pathway|neuron projection development|positive regulation of nucleocytoplasmic transport|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein catabolic process|progesterone receptor signaling pathway|protein K63-linked ubiquitination|protein targeting to lysosome|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|receptor catabolic process|receptor internalization|regulation of dendrite morphogenesis|response to calcium ion|transmission of virus	apicolateral plasma membrane|cell cortex|chromatin|cytosol|perinuclear region of cytoplasm|ubiquitin ligase complex	beta-2 adrenergic receptor binding|phosphoserine binding|phosphothreonine binding|proline-rich region binding|protein domain specific binding|RNA polymerase binding|sodium channel inhibitor activity|ubiquitin binding|ubiquitin-protein ligase activity			skin(2)|ovary(1)|breast(1)	4				all cancers(107;0.0299)|GBM - Glioblastoma multiforme(80;0.113)		TTACGTAGCAGAATATTCAAA	0.303000													28	28					0	0	0	0
Unknown	0	broad.mit.edu	37	15	82620400	82620400	+	RNA	SNP	T	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr15:82620400T>C	uc010bls.1	+	1		c.493T>C								Homo sapiens mRNA for FLJ00317 protein.																		GACCCAAGGGTCAGCCTGAGT	0.672000													2	5					0	0	0	0
MSLN	10232	broad.mit.edu	37	16	815614	815614	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr16:815614G>A	uc002cjw.1	+	9	843	c.792G>A	c.(790-792)CCG>CCA	p.P264P	MSLN_uc002cjt.1_Silent_p.P264P|MSLN_uc002cju.1_Silent_p.P264P|MSLN_uc010brd.1_Silent_p.P263P|MSLN_uc002cjv.1_Silent_p.P264P|MSLN_uc002cjx.1_Silent_p.P264P|MSLN_uc002cjy.1_5'Flank	NM_013404	NP_037536	Q13421	MSLN_HUMAN	mesothelin isoform 2 preproprotein	264	Required for megakaryocyte-potentiating factor activity.				cell adhesion	anchored to membrane|extracellular region|Golgi apparatus|plasma membrane				pancreas(1)	1		Hepatocellular(780;0.00335)				GCAGCATCCCGCAGGTGAGAC	0.706000													5	15					0	0	0	0
CES1	1066	broad.mit.edu	37	16	55860122	55860122	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr16:55860122C>T	uc002eim.2	-	3	451	c.343G>A	c.(343-345)GAC>AAC	p.D115N	CES1_uc002eil.2_Missense_Mutation_p.D116N|CES1_uc002ein.2_Missense_Mutation_p.D115N	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	115				D -> H (in Ref. 19; AAA83932).	response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	TAAAGACAGTCTTCAGAAAGC	0.512000													27	103					0	0	0	0
CDH13	1012	broad.mit.edu	37	16	83813633	83813633	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr16:83813633A>G	uc002fgx.2	+	12	1862	c.1742A>G	c.(1741-1743)AAT>AGT	p.N581S	CDH13_uc010vns.1_Missense_Mutation_p.N628S|CDH13_uc010vnt.1_Missense_Mutation_p.N327S|CDH13_uc010vnu.1_Missense_Mutation_p.N542S	NM_001257	NP_001248	P55290	CAD13_HUMAN	cadherin 13 preproprotein	581	Cadherin 4.				adherens junction organization|calcium-dependent cell-cell adhesion|cell junction assembly|endothelial cell migration|homophilic cell adhesion|keratinocyte proliferation|lamellipodium assembly|localization within membrane|low-density lipoprotein particle mediated signaling|negative regulation of cell adhesion|negative regulation of cell proliferation|positive regulation of calcium-mediated signaling|positive regulation of cell migration|positive regulation of cell-matrix adhesion|positive regulation of endothelial cell proliferation|positive regulation of positive chemotaxis|positive regulation of smooth muscle cell proliferation|positive regulation of survival gene product expression|Rac protein signal transduction|regulation of endocytosis|regulation of epidermal growth factor receptor signaling pathway|Rho protein signal transduction|sprouting angiogenesis	anchored to membrane|caveola|extracellular space|integral to membrane|neuron projection	adiponectin binding|cadherin binding|calcium ion binding|low-density lipoprotein particle binding			large_intestine(1)	1		all_cancers(2;1.34e-11)|all_epithelial(2;4.3e-09)		COAD - Colon adenocarcinoma(5;0.0268)		GTGAATGACAATGCCCCGTTC	0.488000													6	18					0	0	0	0
MYH4	4622	broad.mit.edu	37	17	10363395	10363395	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr17:10363395C>T	uc002gmn.2	-	14	1401	c.1290G>A	c.(1288-1290)CTG>CTA	p.L430L	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	430	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGGCTTTGGCCAGAGCACCCA	0.473000													17	163					0	0	0	0
ALDOC	230	broad.mit.edu	37	17	26902241	26902241	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr17:26902241C>G	uc002hbp.2	-	3	369	c.224G>C	c.(223-225)GGA>GCA	p.G75A	ALDOC_uc010cro.2_Missense_Mutation_p.G75A	NM_005165	NP_005156	P09972	ALDOC_HUMAN	fructose-bisphosphate aldolase C	75					fructose 1,6-bisphosphate metabolic process|gluconeogenesis|glycolysis	cytosol	cytoskeletal protein binding|fructose-bisphosphate aldolase activity			ovary(1)	1	Lung NSC(42;0.00431)					AATGACGCCTCCAATGCACTT	0.527000											OREG0024278	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	24					0	0	0	0
ATAD5	79915	broad.mit.edu	37	17	29220528	29220528	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr17:29220528G>C	uc002hfs.1	+	21	5003	c.4657G>C	c.(4657-4659)GAA>CAA	p.E1553Q		NM_024857	NP_079133	Q96QE3	ATAD5_HUMAN	ATPase family, AAA domain containing 5	1553					response to DNA damage stimulus	nucleus	ATP binding|nucleoside-triphosphatase activity			ovary(3)	3		all_hematologic(16;0.0202)|Acute lymphoblastic leukemia(14;0.0238)|Myeloproliferative disorder(56;0.0393)				GAAACACTCTGAAAGAGAACA	0.368000													19	28					0	0	0	0
ERBB2	2064	broad.mit.edu	37	17	37883113	37883113	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr17:37883113C>T	uc002hso.2	+	25	3254	c.3016C>T	c.(3016-3018)CGC>TGC	p.R1006C	ERBB2_uc002hsm.2_Missense_Mutation_p.R976C|ERBB2_uc010cwa.2_Missense_Mutation_p.R991C|ERBB2_uc002hsp.2_Missense_Mutation_p.R809C|ERBB2_uc010cwb.2_Missense_Mutation_p.R1006C|ERBB2_uc010wek.1_Missense_Mutation_p.R730C	NM_004448	NP_004439	P04626	ERBB2_HUMAN	erbB-2 isoform a	1006	Cytoplasmic (Potential).				cell proliferation|heart development|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of cell adhesion|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|protein autophosphorylation|regulation of angiogenesis|regulation of microtubule-based process|regulation of transcription, DNA-dependent|transcription, DNA-dependent|wound healing	integral to membrane|nucleus|perinuclear region of cytoplasm|receptor complex	ATP binding|DNA binding|epidermal growth factor receptor activity|ErbB-3 class receptor binding|identical protein binding|protein C-terminus binding|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(73)|central_nervous_system(16)|ovary(16)|stomach(14)|breast(9)|upper_aerodigestive_tract(5)|large_intestine(3)|liver(3)|endometrium(2)|skin(1)|pancreas(1)	143	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)	Ovarian(249;0.0547)|Colorectal(1115;0.234)	UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;9.42e-64)|all cancers(3;5.61e-57)|BRCA - Breast invasive adenocarcinoma(8;2.5e-45)|STAD - Stomach adenocarcinoma(3;9.03e-13)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|OV - Ovarian serous cystadenocarcinoma(8;0.0917)|LUSC - Lung squamous cell carcinoma(15;0.171)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0767)	Lapatinib(DB01259)|Letrozole(DB01006)|Trastuzumab(DB00072)	CACCTTCTACCGCTCACTGCT	0.637000		1	A|Mis|O		breast|ovarian|other tumour types|NSCLC|gastric					TCGA GBM(5;<1E-08)			14	58					0	0	0	0
DOK6	220164	broad.mit.edu	37	18	67266711	67266711	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr18:67266711C>T	uc002lkl.2	+	3	456	c.266C>T	c.(265-267)TCG>TTG	p.S89L		NM_152721	NP_689934	Q6PKX4	DOK6_HUMAN	docking protein 6	89	PH.						insulin receptor binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Colorectal(73;0.083)|Esophageal squamous(42;0.131)				GATGAAACATCGAAGACATTT	0.448000													8	29					0	0	0	0
NETO1	81832	broad.mit.edu	37	18	70526309	70526309	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr18:70526309G>T	uc002lkw.2	-	4	505	c.221C>A	c.(220-222)GCC>GAC	p.A74D	NETO1_uc002lkx.1_Missense_Mutation_p.A73D|NETO1_uc002lky.1_Missense_Mutation_p.A74D|NETO1_uc002lkz.2_Missense_Mutation_p.A73D	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	74	CUB 1.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		TCTTGGAGCGGCTGTAAAGAA	0.368000													11	49					5.16669e-11	6.03898e-11	1	0
MUC16	94025	broad.mit.edu	37	19	9009703	9009703	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:9009703G>T	uc002mkp.2	-	39	39227	c.39023C>A	c.(39022-39024)CCT>CAT	p.P13008H	MUC16_uc010dwi.2_5'Flank|MUC16_uc010dwj.2_5'Flank|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	13010	Extracellular (Potential).|SEA 7.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CACCAGGAGAGGAACAGCTGC	0.453000													5	59					5.9392e-07	6.6816e-07	1	0
ZNF536	9745	broad.mit.edu	37	19	30935483	30935483	+	Silent	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:30935483C>A	uc002nsu.1	+	2	1152	c.1014C>A	c.(1012-1014)GGC>GGA	p.G338G	ZNF536_uc010edd.1_Silent_p.G338G	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	338					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACGGCGGTGGCGAGCAGTCGG	0.652000													8	77					5.18039e-06	5.61729e-06	1	0
WDR88	126248	broad.mit.edu	37	19	33623312	33623312	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:33623312G>A	uc002nui.2	+	1	315	c.237G>A	c.(235-237)CCG>CCA	p.P79P		NM_173479	NP_775750	Q6ZMY6	WDR88_HUMAN	PQQ repeat and WD repeat domain containing	79										ovary(1)|breast(1)|central_nervous_system(1)	3	Esophageal squamous(110;0.137)					ACCAGGTGCCGGAGAAATTGA	0.657000													12	43					0	0	0	0
ATP4A	495	broad.mit.edu	37	19	36048663	36048663	+	Nonsense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:36048663G>T	uc002oal.1	-	11	1616	c.1587C>A	c.(1585-1587)TGC>TGA	p.C529*	ATP4A_uc010eee.1_5'UTR	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	529	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GGATGGAGCTGCAGCGCTCCA	0.652000													4	11					1.024e-07	1.16658e-07	1	0
CEACAM18	729767	broad.mit.edu	37	19	51981929	51981929	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:51981929G>T	uc002pwv.1	+	2	216	c.216G>T	c.(214-216)TGG>TGT	p.W72C		NM_001080405	NP_001073874	A8MTB9	CEA18_HUMAN	carcinoembryonic antigen-related cell adhesion	72						integral to membrane				skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.00979)		GGAGCCTGTGGAGGAGGGTCT	0.632000													6	16					5.18039e-06	5.61729e-06	1	0
ZNF613	79898	broad.mit.edu	37	19	52443551	52443551	+	Silent	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:52443551C>T	uc002pxz.1	+	4	528	c.105C>T	c.(103-105)GAC>GAT	p.D35D	ZNF613_uc002pya.1_Translation_Start_Site	NM_001031721	NP_001026891	Q6PF04	ZN613_HUMAN	zinc finger protein 613 isoform 1	35	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		all_neural(266;0.117)		GBM - Glioblastoma multiforme(134;0.00148)|OV - Ovarian serous cystadenocarcinoma(262;0.0183)		TGTACCGAGACGTGATGTTGG	0.542000													26	102					0	0	0	0
ZNF616	90317	broad.mit.edu	37	19	52619658	52619658	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:52619658A>T	uc002pym.2	-	4	1042	c.759T>A	c.(757-759)AAT>AAA	p.N253K	ZNF616_uc002pyn.2_RNA	NM_178523	NP_848618	Q08AN1	ZN616_HUMAN	zinc finger protein 616	253	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				GBM - Glioblastoma multiforme(134;0.00392)|OV - Ovarian serous cystadenocarcinoma(262;0.0189)		CAAAATATGAATTTTTTCTGA	0.398000													8	72					0	0	0	0
LILRB1	10859	broad.mit.edu	37	19	55146110	55146110	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:55146110G>T	uc002qgj.2	+	11	1719	c.1379G>T	c.(1378-1380)GGG>GTG	p.G460V	LILRB1_uc010erp.1_Missense_Mutation_p.G75V|LILRB1_uc002qgl.2_Missense_Mutation_p.G460V|LILRB1_uc002qgk.2_Missense_Mutation_p.G461V|LILRB1_uc002qgm.2_Missense_Mutation_p.G461V|LILRB1_uc010erq.2_Missense_Mutation_p.G444V|LILRB1_uc010err.2_RNA	NM_006669	NP_006660	Q8NHL6	LIRB1_HUMAN	leukocyte immunoglobulin-like receptor,	460	Extracellular (Potential).				regulation of immune response|response to virus	integral to membrane|plasma membrane	protein phosphatase 1 binding|receptor activity			large_intestine(1)|ovary(1)|skin(1)	3				GBM - Glioblastoma multiforme(193;0.0188)		AGGCACCTGGGGGTTGTGATC	0.333000										HNSCC(37;0.09)			4	17					0.00024832	0.00025987	1	0
NLRP7	199713	broad.mit.edu	37	19	55449436	55449436	+	Missense_Mutation	SNP	C	T	T	rs139797510	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr19:55449436C>T	uc002qih.3	-	5	2181	c.2105G>A	c.(2104-2106)AGC>AAC	p.S702N	NLRP7_uc002qig.3_Missense_Mutation_p.S674N|NLRP7_uc002qii.3_Missense_Mutation_p.S702N|NLRP7_uc010esk.2_Missense_Mutation_p.S702N|NLRP7_uc010esl.2_Missense_Mutation_p.S730N	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	702							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		ATGACAGGTGCTACGGGTTAC	0.398000													52	171					0	0	0	0
MSGN1	343930	broad.mit.edu	37	2	17998006	17998006	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr2:17998006C>G	uc010yjt.1	+	1	221	c.221C>G	c.(220-222)GCC>GGC	p.A74G		NM_001105569	NP_001099039	A6NI15	MSGN1_HUMAN	mesogenin 1	74					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CACGGCGGGGCCAGCAGTGGG	0.637000													4	41					0	0	0	0
DOK1	1796	broad.mit.edu	37	2	74783065	74783065	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr2:74783065C>T	uc002sms.2	+	4	521	c.499C>T	c.(499-501)CGC>TGC	p.R167C	LOXL3_uc010ffm.1_5'Flank|LOXL3_uc002smp.1_5'Flank|LOXL3_uc002smq.1_5'Flank|LOXL3_uc010ffn.1_5'Flank|DOK1_uc002smr.2_Missense_Mutation_p.R28C|DOK1_uc010ffo.2_Missense_Mutation_p.R28C|DOK1_uc002smt.2_Intron|DOK1_uc002smu.2_Intron|DOK1_uc010yrz.1_Missense_Mutation_p.R156C|DOK1_uc002smv.2_Missense_Mutation_p.R28C|DOK1_uc002smw.1_5'UTR	NM_001381	NP_001372	Q99704	DOK1_HUMAN	docking protein 1	167	IRS-type PTB.				fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	cytosol|perinuclear region of cytoplasm	insulin receptor binding				0						GGCCGCCGAGCGCTGTGGCCT	0.637000													12	31					0	0	0	0
SNRNP200	23020	broad.mit.edu	37	2	96942823	96942823	+	Missense_Mutation	SNP	G	A	A	rs150442718		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr2:96942823G>A	uc002svu.2	-	42	6174	c.6088C>T	c.(6088-6090)CGC>TGC	p.R2030C	SNRNP200_uc002svt.2_Missense_Mutation_p.R640C|SNRNP200_uc010yuj.1_RNA	NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	2030	SEC63 2.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						GCTCACCTGCGGATGCTGTCC	0.552000													9	71					0	0	0	0
DPP10	57628	broad.mit.edu	37	2	116535403	116535403	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr2:116535403C>A	uc002tla.1	+	15	1811	c.1354C>A	c.(1354-1356)CTG>ATG	p.L452M	DPP10_uc002tlb.1_Missense_Mutation_p.L402M|DPP10_uc002tlc.1_Missense_Mutation_p.L448M|DPP10_uc002tle.2_Missense_Mutation_p.L456M|DPP10_uc002tlf.1_Missense_Mutation_p.L445M	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	452	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						AGGAAGGCAGCTGTACAGGTA	0.403000													17	41					1.00905e-13	1.19492e-13	1	0
LRP1B	53353	broad.mit.edu	37	2	141359128	141359128	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr2:141359128T>C	uc002tvj.1	-	42	7852	c.6880A>G	c.(6880-6882)ACC>GCC	p.T2294A		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2294	Extracellular (Potential).|LDL-receptor class B 24.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GTGTGTCTGGTGATGGATGAG	0.512000										TSP Lung(27;0.18)			9	29					0	0	0	0
HIBCH	26275	broad.mit.edu	37	2	191116990	191116990	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr2:191116990G>A	uc002uru.2	-	8	644	c.561C>T	c.(559-561)CTC>CTT	p.L187L	HIBCH_uc002urv.2_Silent_p.L187L	NM_014362	NP_055177	Q6NVY1	HIBCH_HUMAN	3-hydroxyisobutyryl-Coenzyme A hydrolase isoform	187				LPRLQGKLGYFLALT -> FATTPRKTWLLPCIN (in Ref. 1; AAC52114).	branched chain family amino acid catabolic process	mitochondrial matrix	3-hydroxyisobutyryl-CoA hydrolase activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(117;0.000586)|Epithelial(96;0.0286)|all cancers(119;0.0814)			GTTTTCCTTGGAGTCGTGGCA	0.363000													21	33					0	0	0	0
MTERFD2	130916	broad.mit.edu	37	2	242035518	242035518	+	Missense_Mutation	SNP	A	C	C	rs10203977		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr2:242035518A>C	uc002wan.1	-	3	1621	c.1128T>G	c.(1126-1128)GAT>GAG	p.D376E	MTERFD2_uc010zoj.1_Missense_Mutation_p.D159E	NM_182501	NP_872307	Q7Z6M4	MTER2_HUMAN	MTERF domain containing 2	347										ovary(1)	1		all_cancers(19;4.67e-31)|all_epithelial(40;8.67e-13)|Breast(86;0.000141)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;2.47e-32)|all cancers(36;1.79e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-14)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;2.81e-06)|Lung(119;0.000509)|LUSC - Lung squamous cell carcinoma(224;0.00442)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0886)		tgtcctcctcatcatcgtcat	0.214000													22	28					0	0	0	0
SLC4A11	83959	broad.mit.edu	37	20	3211199	3211199	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr20:3211199G>A	uc002wig.2	-	11	1473	c.1425C>T	c.(1423-1425)GCC>GCT	p.A475A	SLC4A11_uc010zqe.1_Silent_p.A502A|SLC4A11_uc002wih.2_RNA|SLC4A11_uc010zqf.1_Silent_p.A459A	NM_032034	NP_114423	Q8NBS3	S4A11_HUMAN	solute carrier family 4 member 11	475	Helical; (Potential).|Membrane (bicarbonate transporter).				cellular cation homeostasis|fluid transport|phosphoenolpyruvate-dependent sugar phosphotransferase system	basolateral plasma membrane|integral to membrane	bicarbonate transmembrane transporter activity|borate transmembrane transporter activity|hydrogen ion channel activity|inorganic anion exchanger activity|sodium channel activity|sugar:hydrogen symporter activity			ovary(1)	1						GGTTGAAAAAGGCATAAAGCG	0.532000													16	57					0	0	0	0
C20orf103	24141	broad.mit.edu	37	20	9510385	9510385	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr20:9510385C>T	uc002wni.1	+	6	990	c.761C>T	c.(760-762)GCG>GTG	p.A254V	C20orf103_uc010zrc.1_Missense_Mutation_p.A210V	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	254	Helical; (Potential).					integral to membrane		p.A254V(1)		upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			GTAACACTCGCGATTTACCAC	0.547000													7	39					0	0	0	0
ITGB2	3689	broad.mit.edu	37	21	46320235	46320235	+	Silent	SNP	G	A	A	rs150327269		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr21:46320235G>A	uc002zgd.2	-	6	941	c.897C>T	c.(895-897)TTC>TTT	p.F299F	ITGB2_uc002zge.2_Silent_p.F299F|ITGB2_uc002zgf.3_Silent_p.F299F|ITGB2_uc011afl.1_Silent_p.F221F|ITGB2_uc010gpw.2_Silent_p.F242F|ITGB2_uc002zgg.2_Silent_p.F299F	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	299	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GGGGACTTACGAATTCGTTGC	0.637000													7	29					0	0	0	0
MLH1	4292	broad.mit.edu	37	3	37056031	37056031	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr3:37056031C>G	uc003cgl.2	+	9	846	c.786C>G	c.(784-786)ATC>ATG	p.I262M	MLH1_uc011aye.1_Missense_Mutation_p.I21M|MLH1_uc011ayb.1_Missense_Mutation_p.I21M|MLH1_uc010hge.2_Missense_Mutation_p.I262M|MLH1_uc003cgn.3_Missense_Mutation_p.I21M|MLH1_uc011ayc.1_Missense_Mutation_p.I164M|MLH1_uc011ayd.1_Missense_Mutation_p.I21M|MLH1_uc003cgo.2_Missense_Mutation_p.I21M|MLH1_uc010hgg.1_Translation_Start_Site|MLH1_uc010hgh.1_Intron|MLH1_uc010hgi.1_Translation_Start_Site|MLH1_uc010hgj.1_Intron|MLH1_uc010hgk.2_Translation_Start_Site|MLH1_uc010hgl.1_Translation_Start_Site	NM_000249	NP_000240	P40692	MLH1_HUMAN	MutL protein homolog 1	262			Missing (in HNPCC2).|Missing (in HNPCC2).		mismatch repair|somatic hypermutation of immunoglobulin genes	chiasma|MutLalpha complex|MutLbeta complex|synaptonemal complex	ATP binding|ATPase activity|protein binding	p.0?(1)		large_intestine(40)|haematopoietic_and_lymphoid_tissue(8)|ovary(6)|pancreas(5)|stomach(3)|central_nervous_system(3)|endometrium(3)|breast(3)|prostate(3)|skin(2)|NS(1)	77						TACTCTTCATCAACCGTAAGT	0.383000		1	D|Mis|N|F|S		colorectal|endometrial|ovarian|CNS	colorectal|endometrial|ovarian|CNS		MMR	Lynch_syndrome|Muir-Torre_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				10	25					0	0	0	0
CYP8B1	1582	broad.mit.edu	37	3	42915828	42915828	+	Missense_Mutation	SNP	C	T	T	rs145159025	by1000genomes	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr3:42915828C>T	uc003cmh.2	-	1	1806	c.1481G>A	c.(1480-1482)CGC>CAC	p.R494H	CCBP2_uc003cmd.1_Intron|CCBP2_uc003cmg.2_Intron|CYP8B1_uc010hif.2_Intron	NM_004391	NP_004382	Q9UNU6	CP8B1_HUMAN	cytochrome P450, family 8, subfamily B,	494					bile acid biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	7alpha-hydroxycholest-4-en-3-one 12alpha-hydroxylase activity|electron carrier activity|heme binding|oxygen binding|sterol 12-alpha-hydroxylase activity			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.213)|Kidney(284;0.249)		CAGGCGGTAGCGGAAGCGCAC	0.582000													7	31					0	0	0	0
C3orf30	152405	broad.mit.edu	37	3	118865966	118865966	+	Silent	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr3:118865966G>C	uc003ecb.1	+	1	970	c.930G>C	c.(928-930)GTG>GTC	p.V310V	IGSF11_uc003eby.2_5'Flank|IGSF11_uc003ebz.2_5'Flank|IGSF11_uc010hqs.2_5'Flank|C3orf30_uc011biw.1_Silent_p.V310V	NM_152539	NP_689752	Q96M34	CC030_HUMAN	hypothetical protein LOC152405	310										ovary(2)	2				GBM - Glioblastoma multiforme(114;0.222)		ACCACCAAGTGTACGGCCAAG	0.493000													7	33					0	0	0	0
GBA3	57733	broad.mit.edu	37	4	22820400	22820400	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr4:22820400A>T	uc003gqp.3	+	5	1355	c.1264A>T	c.(1264-1266)AAC>TAC	p.N422Y	GBA3_uc010iep.2_Missense_Mutation_p.N115Y|GBA3_uc011bxo.1_Missense_Mutation_p.N423Y	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	422					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						TCTTCTGGATAACTTTGAGTG	0.423000													3	19					0	0	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406083	106406083	+	Missense_Mutation	SNP	A	C	C	rs17008180	by1000genomes	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr4:106406083A>C	uc003hxt.1	+	1	221	c.91A>C	c.(91-93)AAA>CAA	p.K31Q		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						CTCTTTGTGGAAATTTGAGAC	0.458000													3	58					0	0	0	0
THBS4	7060	broad.mit.edu	37	5	79336023	79336023	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr5:79336023C>T	uc003kgh.2	+	3	535	c.212C>T	c.(211-213)TCA>TTA	p.S71L		NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	71	TSP N-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		ACTAAAAGTTCAGCCACCATC	0.443000													11	31					0	0	0	0
PCDHA13	56136	broad.mit.edu	37	5	140263705	140263705	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr5:140263705G>A	uc003lif.2	+	1	1852	c.1852G>A	c.(1852-1854)GCG>ACG	p.A618T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Missense_Mutation_p.A618T|PCDHA13_uc003lid.2_Missense_Mutation_p.A618T	NM_018904	NP_061727	Q9Y5I0	PCDAD_HUMAN	protocadherin alpha 13 isoform 1 precursor	618	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGCGGTCGGCGCGCGCATCCC	0.687000													25	48					0	0	0	0
PCDHB8	56128	broad.mit.edu	37	5	140558774	140558774	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr5:140558774C>T	uc011dai.1	+	1	1345	c.1159C>T	c.(1159-1161)CAG>TAG	p.Q387*	PCDHB16_uc003liv.2_5'Flank	NM_019120	NP_061993	Q9UN66	PCDB8_HUMAN	protocadherin beta 8 precursor	387	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTGCTCCATTCAGGAGGATCT	0.458000													15	135					0	0	0	0
GPRIN1	114787	broad.mit.edu	37	5	176025296	176025296	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr5:176025296C>T	uc003meo.1	-	2	1715	c.1540G>A	c.(1540-1542)GCG>ACG	p.A514T		NM_052899	NP_443131	Q7Z2K8	GRIN1_HUMAN	G protein-regulated inducer of neurite outgrowth	514						growth cone|plasma membrane				ovary(2)	2	all_cancers(89;0.00263)|Renal(175;0.000269)|Lung NSC(126;0.00902)|all_lung(126;0.0142)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CCCCCCGTCGCTGGCTCAGCC	0.627000													12	34					0	0	0	0
DPCR1	135656	broad.mit.edu	37	6	30919701	30919701	+	Silent	SNP	T	C	C	rs114468580	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr6:30919701T>C	uc003nsg.2	+	2	3460	c.3460T>C	c.(3460-3462)TTG>CTG	p.L1154L		NM_080870	NP_543146	Q3MIW9	DPCR1_HUMAN	diffuse panbronchiolitis critical region 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						integral to membrane					0						AAGGACCACATTGGCCCATGA	0.473000													3	18					0	0	0	0
POU3F2	5454	broad.mit.edu	37	6	99283616	99283616	+	Silent	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr6:99283616G>A	uc003ppe.2	+	1	1037	c.867G>A	c.(865-867)GCG>GCA	p.A289A		NM_005604	NP_005595	P20265	PO3F2_HUMAN	POU domain, class 3, transcription factor 2	289	POU-specific.				positive regulation of cell proliferation		identical protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0355)		TTACCCAAGCGGACGTGGGGC	0.607000													39	153					0	0	0	0
LIN28B	389421	broad.mit.edu	37	6	105474273	105474273	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr6:105474273C>G	uc003pqv.1	+	3	502	c.299C>G	c.(298-300)ACA>AGA	p.T100R	LIN28B_uc010kda.1_Missense_Mutation_p.T60R	NM_001004317	NP_001004317	Q6ZN17	LN28B_HUMAN	lin-28 homolog B	100	CSD.				miRNA catabolic process|pre-miRNA processing|regulation of transcription, DNA-dependent|RNA 3'-end processing	cytoplasm|nucleus	DNA binding|protein binding|RNA binding|zinc ion binding				0		all_cancers(87;0.00346)|Acute lymphoblastic leukemia(125;2.26e-08)|all_hematologic(75;2.79e-06)|all_epithelial(87;0.204)				ATACGGGTAACAGGACCTGGT	0.403000													21	87					0	0	0	0
SYNE1	23345	broad.mit.edu	37	6	152674420	152674420	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr6:152674420C>T	uc010kiw.2	-	69	11833	c.11231G>A	c.(11230-11232)GGG>GAG	p.G3744E	SYNE1_uc003qot.3_Missense_Mutation_p.G3729E|SYNE1_uc003qou.3_Missense_Mutation_p.G3744E|SYNE1_uc010kja.1_Missense_Mutation_p.G449E	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3744	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CAATTTCTTCCCCATCATTAC	0.423000										HNSCC(10;0.0054)			38	149					0	0	0	0
SYNJ2	8871	broad.mit.edu	37	6	158449945	158449945	+	Silent	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr6:158449945C>G	uc003qqx.1	+	3	447	c.372C>G	c.(370-372)CTC>CTG	p.L124L	SYNJ2_uc011efm.1_RNA|SYNJ2_uc003qqw.1_Silent_p.L124L|SYNJ2_uc003qqy.1_5'UTR|SYNJ2_uc011efn.1_Silent_p.L73L|SYNJ2_uc010kjo.1_Silent_p.L73L	NM_003898	NP_003889	O15056	SYNJ2_HUMAN	synaptojanin 2	124	SAC.						nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(65;4.42e-18)|BRCA - Breast invasive adenocarcinoma(81;4.23e-05)		AGAAAATCCTCAGCTCGGGGG	0.512000													12	29					0	0	0	0
PMS2L11	441263	broad.mit.edu	37	7	76610473	76610473	+	RNA	SNP	C	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr7:76610473C>T	uc003ufw.3	+	1		c.335C>T			PMS2L11_uc011kgn.1_RNA	NR_023383				Homo sapiens cDNA FLJ59034 complete cds, moderately similar to Protein deltex-2.												0						ACGCCTGGGACGCAGCTCCTC	0.667000													18	46					0	0	0	0
PRSS1	5644	broad.mit.edu	37	7	142458445	142458445	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr7:142458445G>A	uc003wak.2	+	2	97	c.80G>A	c.(79-81)GGC>GAC	p.G27D	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_Intron|PRSS1_uc003wam.2_5'Flank	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	27	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			ATCGTTGGGGGCTACAACTGT	0.537000									Hereditary_Pancreatitis				21	153					0	0	0	0
TRY6	154754	broad.mit.edu	37	7	142479948	142479948	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr7:142479948G>A	uc011ksq.1	+	2	163	c.80G>A	c.(79-81)GGC>GAC	p.G27D	uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_RNA|uc003wan.1_Intron|TRY6_uc011kso.1_RNA|TRY6_uc011ksr.1_RNA	NR_001296				SubName: Full=Protease, serine, 3; Flags: Fragment;												0						ATCGTTGGGGGCTACACCTGT	0.552000													14	88					0	0	0	0
INTS8	55656	broad.mit.edu	37	8	95866050	95866050	+	Silent	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr8:95866050C>G	uc003yhb.2	+	14	1785	c.1659C>G	c.(1657-1659)GTC>GTG	p.V553V	INTS8_uc003yha.1_Silent_p.V553V|INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Silent_p.V380V	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	553					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TACCTTCTGTCTATAGTGGTG	0.333000													18	64					0	0	0	0
ZDHHC21	340481	broad.mit.edu	37	9	14674243	14674243	+	Silent	SNP	G	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr9:14674243G>T	uc003zli.2	-	4	566	c.96C>A	c.(94-96)CCC>CCA	p.P32P	ZDHHC21_uc003zlg.1_Intron	NM_178566	NP_848661	Q8IVQ6	ZDH21_HUMAN	zinc finger, DHHC-type containing 21	32	Helical; (Potential).				nitric oxide metabolic process|regulation of nitric-oxide synthase activity	Golgi membrane|integral to membrane	palmitoyltransferase activity|zinc ion binding				0				GBM - Glioblastoma multiforme(50;4.31e-06)		GGACAATTTTGGGAATTAAAA	0.333000													12	198					0.000151284	0.000162091	1	0
FREM1	158326	broad.mit.edu	37	9	14740170	14740170	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr9:14740170C>G	uc003zlm.2	-	36	6907	c.6317G>C	c.(6316-6318)GGT>GCT	p.G2106A	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_RNA|FREM1_uc003zll.2_Missense_Mutation_p.G642A	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	2106	C-type lectin.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		CTTTCTCCCACCAATGTCCCA	0.502000													11	162					0	0	0	0
UNC13B	10497	broad.mit.edu	37	9	35310565	35310565	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr9:35310565G>A	uc003zwq.2	+	9	1155	c.863G>A	c.(862-864)CGG>CAG	p.R288Q	UNC13B_uc010mkl.1_Missense_Mutation_p.R288Q|UNC13B_uc003zwr.2_Missense_Mutation_p.R288Q	NM_006377	NP_006368	O14795	UN13B_HUMAN	UNC13 (C. elegans)-like	288					excretion|induction of apoptosis|intracellular signal transduction	cell junction|Golgi apparatus|synapse	metal ion binding|receptor activity			ovary(3)|large_intestine(1)|skin(1)	5	all_epithelial(49;0.212)		LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)|STAD - Stomach adenocarcinoma(86;0.194)			GACGACCATCGGGAGACGGAC	0.517000													40	218					0	0	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071002	141071002	+	Silent	SNP	A	G	G	rs28433994		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr9:141071002A>G	uc004com.2	+	4	666	c.405A>G	c.(403-405)CTA>CTG	p.L135L	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						ACGAAGCGCTATATGACATAT	0.537000													3	56					0	0	0	0
HUWE1	10075	broad.mit.edu	37	X	53613475	53613475	+	Nonsense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chrX:53613475G>C	uc004dsp.2	-	39	5201	c.4799C>G	c.(4798-4800)TCA>TGA	p.S1600*	HUWE1_uc004dsn.2_Nonsense_Mutation_p.S425*	NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	1600					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TCTCCTTTTTGAGGAGATGGC	0.423000													3	14					0	0	0	0
UPRT	139596	broad.mit.edu	37	X	74494381	74494381	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chrX:74494381G>C	uc004ecb.1	+	1	421	c.292G>C	c.(292-294)GAG>CAG	p.E98Q	UPRT_uc010nlu.1_Missense_Mutation_p.E98Q|UPRT_uc004ecc.1_RNA|UPRT_uc004ecd.1_Missense_Mutation_p.E98Q|UPRT_uc004ece.1_5'Flank	NM_145052	NP_659489	Q96BW1	UPP_HUMAN	uracil phosphoribosyltransferase (FUR1) homolog	98					nucleoside metabolic process	cytoplasm|nucleus					0						CTCCTTCCTAGAGGACTGCGA	0.582000													2	18					0	0	0	0
ATP7A	538	broad.mit.edu	37	X	77245124	77245124	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chrX:77245124G>A	uc004ecx.3	+	4	1166	c.1006G>A	c.(1006-1008)GAG>AAG	p.E336K	ATP7A_uc004ecw.2_Missense_Mutation_p.E336K	NM_000052	NP_000043	Q04656	ATP7A_HUMAN	ATPase, Cu++ transporting, alpha polypeptide	336	HMA 3.|Cytoplasmic (Potential).			E -> V (in Ref. 1; AAA35580 and 8; AAA96010).	ATP biosynthetic process|blood vessel development|blood vessel remodeling|cartilage development|cellular copper ion homeostasis|cerebellar Purkinje cell differentiation|collagen fibril organization|copper ion import|detoxification of copper ion|dopamine metabolic process|elastic fiber assembly|elastin biosynthetic process|epinephrine metabolic process|hair follicle morphogenesis|locomotory behavior|lung alveolus development|negative regulation of metalloenzyme activity|neuroprotection|peptidyl-lysine modification|pigmentation|positive regulation of metalloenzyme activity|positive regulation of oxidoreductase activity|pyramidal neuron development|regulation of oxidative phosphorylation|removal of superoxide radicals|serotonin metabolic process|skin development|T-helper cell differentiation|tryptophan metabolic process	basolateral plasma membrane|cytosol|endoplasmic reticulum|endoplasmic reticulum|integral to membrane|late endosome|neuron projection|neuronal cell body|perinuclear region of cytoplasm|trans-Golgi network|trans-Golgi network transport vesicle	ATP binding|copper-dependent protein binding|copper-exporting ATPase activity|superoxide dismutase copper chaperone activity				0						AAAAGCAATAGAGGCTGTATC	0.418000													78	131					0	0	0	0
SLITRK2	84631	broad.mit.edu	37	X	144904556	144904556	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chrX:144904556A>T	uc004fcd.2	+	5	1603	c.613A>T	c.(613-615)ATT>TTT	p.I205F	SLITRK2_uc010nsp.2_Missense_Mutation_p.I205F|SLITRK2_uc010nso.2_Missense_Mutation_p.I205F|SLITRK2_uc011mwq.1_Missense_Mutation_p.I205F|SLITRK2_uc011mwr.1_Missense_Mutation_p.I205F|SLITRK2_uc011mws.1_Missense_Mutation_p.I205F|SLITRK2_uc004fcg.2_Missense_Mutation_p.I205F|SLITRK2_uc011mwt.1_Missense_Mutation_p.I205F	NM_032539	NP_115928	Q9H156	SLIK2_HUMAN	SLIT and NTRK-like family, member 2 precursor	205	Extracellular (Potential).					integral to membrane				ovary(5)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(192;6.56e-05)					CCTTGAACATATTGGAGGGAT	0.473000													19	128					0	0	0	0
EPHA2	1969	broad.mit.edu	37	1	16464477	16464478	+	Frame_Shift_Ins	INS	-	G	G	rs139909813		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr1:16464477_16464478insG	uc001aya.1	-	5	1319_1320	c.1182_1183insC	c.(1180-1185)CGCACCfs	p.R394fs	EPHA2_uc010oca.1_Frame_Shift_Ins_p.R394fs	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	394_395	Extracellular (Potential).|Fibronectin type-III 1.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GTCACACTGGTGCGGGTCAGTC	0.644													---	---	---							
Unknown	0	broad.mit.edu	37	17	20416848	20416849	+	IGR	INS	-	A	A			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr17:20416848_20416849insA								LGALS9B (46000 upstream) : CCDC144NL (349861 downstream)																							CAGGCTGAAAGAAAAAAAAAAA	0.554													---	---	---							
FBXW7	55294	broad.mit.edu	37	4	153247377	153247379	+	In_Frame_Del	DEL	AAC	-	-			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr4:153247377_153247379delAAC	uc003ims.2	-	10	1572_1574	c.1423_1425delGTT	c.(1423-1425)GTTdel	p.V475del	FBXW7_uc011cii.1_In_Frame_Del_p.V475del|FBXW7_uc003imt.2_In_Frame_Del_p.V475del|FBXW7_uc011cih.1_In_Frame_Del_p.V299del|FBXW7_uc003imq.2_In_Frame_Del_p.V395del|FBXW7_uc003imr.2_In_Frame_Del_p.V357del	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	475	WD 3.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GAGAACCGCTAACAACTCTGCAG	0.389			Mis|N|D|F		colorectal|endometrial|T-ALL								---	---	---							
HOXA5	3202	broad.mit.edu	37	7	27185066	27185075	+	5'Flank	DEL	GTTTTGTTTT	-	-	rs70994631		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr7:27185066_27185075delGTTTTGTTTT	uc003syn.1	-						uc003syp.1_5'Flank	NM_019102	NP_061975	P20719	HXA5_HUMAN	homeobox A5						negative regulation of angiogenesis|negative regulation of erythrocyte differentiation|positive regulation of apoptosis|positive regulation of myeloid cell differentiation|positive regulation of receptor biosynthetic process|positive regulation of transcription from RNA polymerase II promoter	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TGTGTGTGAGgttttgttttgttttgtttt	0.467													---	---	---							
DAB2IP	153090	broad.mit.edu	37	9	124522529	124522529	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr9:124522529delG	uc004bln.2	+	6	966	c.897delG	c.(895-897)ATGfs	p.M299fs	DAB2IP_uc004blo.2_Frame_Shift_Del_p.M203fs	NM_032552	NP_115941	Q5VWQ8	DAB2P_HUMAN	disabled homolog 2 interacting protein isoform	327					activation of JUN kinase activity|apoptosis in response to endoplasmic reticulum stress|cellular response to epidermal growth factor stimulus|cellular response to tumor necrosis factor|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of fibroblast proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of MAP kinase activity|negative regulation of NF-kappaB transcription factor activity|negative regulation of Ras GTPase activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|intrinsic to internal side of plasma membrane	14-3-3 protein binding|death receptor binding|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity|protein phosphatase 2A binding|Ras GTPase activator activity|signaling adaptor activity			ovary(1)|central_nervous_system(1)	2						CTGGACCCATGATCCGCATCA	0.622													---	---	---							
CAMSAP1	157922	broad.mit.edu	37	9	138715799	138715800	+	Frame_Shift_Ins	INS	-	T	T	rs148250832	byFrequency	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chr9:138715799_138715800insT	uc004cgr.3	-	10	1396_1397	c.1396_1397insA	c.(1396-1398)ACCfs	p.T466fs	CAMSAP1_uc004cgq.3_Frame_Shift_Ins_p.T356fs|CAMSAP1_uc010nbg.2_Frame_Shift_Ins_p.T188fs	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	466						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GACTCACCTGGTTTTTTTTTCT	0.337													---	---	---							
GABRE	2564	broad.mit.edu	37	X	151138747	151138752	+	In_Frame_Del	DEL	CAGTCT	-	-			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-10A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	dabfb4d4-709e-497b-904c-d91d22ec5b55	g.chrX:151138747_151138752delCAGTCT	uc004ffi.2	-	2	233_238	c.179_184delAGACTG	c.(178-186)GAGACTGGG>GGG	p.ET60del	GABRE_uc011myd.1_RNA|GABRE_uc011mye.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	60_61	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ACTCTGCTCCCAGTCTCAGTCTCAGT	0.519													---	---	---							
EPHA2	1969	broad.mit.edu	37	1	16464477	16464478	+	Frame_Shift_Ins	INS	-	G	G	rs139909813		TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr1:16464477_16464478insG	uc001aya.1	-	5	1319_1320	c.1182_1183insC	c.(1180-1185)CGCACCfs	p.R394fs	EPHA2_uc010oca.1_Frame_Shift_Ins_p.R394fs	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	394_395	Extracellular (Potential).|Fibronectin type-III 1.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	GTCACACTGGTGCGGGTCAGTC	0.644													---	---	---							
Unknown	0	broad.mit.edu	37	10	27620447	27620448	+	IGR	INS	-	TT	TT	rs142562667	by1000genomes	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr10:27620447_27620448insTT								LOC387646 (79212 upstream) : PTCHD3 (66669 downstream)																							ACTCAGGCTTCTTTCCGCCAAG	0.465													---	---	---							
ADAM21P1	145241	broad.mit.edu	37	14	70714561	70714561	+	5'Flank	DEL	A	-	-			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr14:70714561delA	uc010ttg.1	-							NR_003951				SubName: Full=ADAM21-like protein;												0						ATAAGTAAGGAAATCAGGAGA	0.289													---	---	---							
Unknown	0	broad.mit.edu	37	16	88620066	88620068	+	IGR	DEL	CCC	-	-			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr16:88620066_88620068delCCC								ZFPM1 (18493 upstream) : ZC3H18 (16721 downstream)																							aagactccatccccccaaaaaaa	0.167													---	---	---							
Unknown	0	broad.mit.edu	37	22	19618654	19618654	+	IGR	DEL	T	-	-			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr22:19618654delT								LOC150185 (64292 upstream) : SEPT5 (83333 downstream)																							AGTCCATCCCttttttttttt	0.204													---	---	---							
VENTXP7	391518	broad.mit.edu	37	3	21447901	21447902	+	RNA	INS	-	CC	CC	rs143568999	by1000genomes	TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr3:21447901_21447902insCC	uc003ccd.2	+	1		c.684_685insCC				NR_002311				Homo sapiens VENT homeobox (Xenopus laevis) pseudogene 7 (VENTXP7), non-coding RNA.												0						CTGGCATACCACCCCCCACGCC	0.663													---	---	---							
FBXW7	55294	broad.mit.edu	37	4	153247377	153247379	+	In_Frame_Del	DEL	AAC	-	-			TCGA-CV-7425-01A-11D-2078-08	TCGA-CV-7425-11A-01D-2078-08									Somatic	Phase_I	Capture				Illumina GAIIx	f8cc6696-91d0-4eba-a765-ef7d044238ce	cf149007-ed33-4a5d-a925-193a5d670349	g.chr4:153247377_153247379delAAC	uc003ims.2	-	10	1572_1574	c.1423_1425delGTT	c.(1423-1425)GTTdel	p.V475del	FBXW7_uc011cii.1_In_Frame_Del_p.V475del|FBXW7_uc003imt.2_In_Frame_Del_p.V475del|FBXW7_uc011cih.1_In_Frame_Del_p.V299del|FBXW7_uc003imq.2_In_Frame_Del_p.V395del|FBXW7_uc003imr.2_In_Frame_Del_p.V357del	NM_033632	NP_361014	Q969H0	FBXW7_HUMAN	F-box and WD repeat domain containing 7 isoform	475	WD 3.				interspecies interaction between organisms|lipid homeostasis|negative regulation of DNA endoreduplication|negative regulation of hepatocyte proliferation|negative regulation of Notch signaling pathway|negative regulation of triglyceride biosynthetic process|positive regulation of epidermal growth factor receptor activity|positive regulation of ERK1 and ERK2 cascade|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|protein stabilization|protein ubiquitination|regulation of lipid storage|regulation of protein localization|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process|sister chromatid cohesion|vasculature development	nucleolus|nucleolus|nucleoplasm|nucleoplasm|SCF ubiquitin ligase complex	protein binding|protein binding			haematopoietic_and_lymphoid_tissue(125)|large_intestine(99)|stomach(16)|lung(14)|endometrium(13)|ovary(9)|biliary_tract(8)|upper_aerodigestive_tract(5)|central_nervous_system(3)|kidney(3)|skin(3)|pancreas(3)|breast(2)|prostate(2)|cervix(1)|NS(1)|bone(1)	308	all_hematologic(180;0.093)	Acute lymphoblastic leukemia(8;0.000629)|all_hematologic(8;0.067)				GAGAACCGCTAACAACTCTGCAG	0.389			Mis|N|D|F		colorectal|endometrial|T-ALL								---	---	---							
