Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	isArtifactMode	oxoGCut
CROCC	9696	broad.mit.edu	37	1	17256382	17256382	+	Silent	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:17256382G>T	uc001azt.2	+	4	462	c.393G>T	c.(391-393)ACG>ACT	p.T131T	CROCC_uc009voy.1_Intron|CROCC_uc009voz.1_5'UTR	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	131	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		AGCTGGAGACGCAGGAGCCCA	0.697000													7	5					0.00307968	0.00327966	1	0
PAFAH2	5051	broad.mit.edu	37	1	26301058	26301058	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:26301058T>G	uc001bld.3	-	9	1022	c.842A>C	c.(841-843)AAT>ACT	p.N281T	PAFAH2_uc001ble.3_Missense_Mutation_p.N281T	NM_000437	NP_000428	Q99487	PAFA2_HUMAN	platelet-activating factor acetylhydrolase 2	281					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding			ovary(2)	2		Colorectal(325;3.47e-05)|Lung NSC(340;6.23e-05)|all_lung(284;9.48e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-25)|Colorectal(126;3.57e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00717)|READ - Rectum adenocarcinoma(331;0.0649)		TTTCTCAGTATTGATAAAGAA	0.468000													19	15					0	0	0	0
ARID1A	8289	broad.mit.edu	37	1	27089635	27089635	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:27089635G>T	uc001bmv.1	+	8	2964	c.2591G>T	c.(2590-2592)GGC>GTC	p.G864V	ARID1A_uc001bmt.1_Missense_Mutation_p.G864V|ARID1A_uc001bmu.1_Missense_Mutation_p.G864V|ARID1A_uc001bmw.1_Missense_Mutation_p.G481V	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	864					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GCCTCCATGGGCAACCGGCCT	0.587000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								24	23					3.28513e-13	3.71559e-13	1	0
CLCA2	9635	broad.mit.edu	37	1	86913313	86913313	+	Silent	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:86913313A>G	uc001dlr.3	+	11	1998	c.1836A>G	c.(1834-1836)GAA>GAG	p.E612E		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	612	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		CCTTTGTGGAAAGAGACAGCC	0.493000													55	108					0	0	0	0
AGL	178	broad.mit.edu	37	1	100358058	100358058	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:100358058A>G	uc001dsi.1	+	24	3554	c.3154A>G	c.(3154-3156)AAA>GAA	p.K1052E	AGL_uc001dsj.1_Missense_Mutation_p.K1052E|AGL_uc001dsk.1_Missense_Mutation_p.K1052E|AGL_uc001dsl.1_Missense_Mutation_p.K1052E|AGL_uc001dsm.1_Missense_Mutation_p.K1036E|AGL_uc001dsn.1_Missense_Mutation_p.K1035E	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1052	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TGGAGTAGGAAAATTCCCTTC	0.378000													29	47					0	0	0	0
LOC645166	645166	broad.mit.edu	37	1	148932866	148932866	+	RNA	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:148932866G>A	uc010pbc.1	+	2		c.181G>A			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						CCAAGAGTTGGTGGGAGACGG	0.627000													12	223					0	0	0	0
LINGO4	339398	broad.mit.edu	37	1	151774779	151774779	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:151774779C>T	uc001ezf.1	-	2	592	c.402G>A	c.(400-402)CTG>CTA	p.L134L		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	134	Extracellular (Potential).|LRR 4.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CCAGCAGGGTCAGAGCAGAGA	0.597000													92	76					0	0	0	0
CD1A	909	broad.mit.edu	37	1	158226702	158226702	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:158226702A>T	uc001frt.2	+	4	1264	c.731A>T	c.(730-732)CAG>CTG	p.Q244L		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	244	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	GAGCAGGAGCAGCAGGGCACT	0.642000													39	80					0	0	0	0
KCNJ9	3765	broad.mit.edu	37	1	160054148	160054148	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:160054148G>C	uc001fuy.1	+	2	570	c.328G>C	c.(328-330)GCC>CCC	p.A110P		NM_004983	NP_004974	Q92806	IRK9_HUMAN	potassium inwardly-rectifying channel subfamily	110					synaptic transmission	integral to membrane|plasma membrane	G-protein activated inward rectifier potassium channel activity|protein binding			ovary(1)|skin(1)	2	all_cancers(52;5.86e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTTCGTGGCCGCCTTCCTCTT	0.677000													24	39					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237949308	237949308	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:237949308G>C	uc001hyl.1	+	91	13420	c.13300G>C	c.(13300-13302)GAA>CAA	p.E4434Q	RYR2_uc010pya.1_Missense_Mutation_p.E849Q	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4434	Potential.|Glu-rich (acidic).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			agaaaaagaagaaACCAAATC	0.318000													3	3					0	0	0	0
OR2T12	127064	broad.mit.edu	37	1	248458473	248458473	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:248458473C>T	uc010pzj.1	-	1	408	c.408G>A	c.(406-408)TGG>TGA	p.W136*		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			GGCACAGCTGCCAGCTCATGA	0.607000													29	44					0	0	0	0
FAM178A	55719	broad.mit.edu	37	10	102684308	102684308	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr10:102684308A>G	uc001krt.3	+	5	2092	c.1550A>G	c.(1549-1551)GAA>GGA	p.E517G	FAM178A_uc001krr.1_Missense_Mutation_p.E517G|FAM178A_uc001krs.2_Missense_Mutation_p.E517G|FAM178A_uc001kru.1_Missense_Mutation_p.E452G	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	517											0						CATTCTACAGAATCCACCAAA	0.393000													58	88					0	0	0	0
SORCS1	114815	broad.mit.edu	37	10	108371726	108371726	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr10:108371726C>T	uc001kym.2	-	22	2984	c.2976G>A	c.(2974-2976)CCG>CCA	p.P992P	SORCS1_uc001kyl.2_Silent_p.P992P|SORCS1_uc009xxs.2_Silent_p.P992P|SORCS1_uc001kyn.1_Silent_p.P992P|SORCS1_uc001kyo.2_Silent_p.P992P	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	992	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		CAGGGATGTCCGGGTTGTAGT	0.483000													27	52					0	0	0	0
RPL13AP6	644511	broad.mit.edu	37	10	112696885	112696885	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr10:112696885A>T	uc010qrh.1	-	1	129	c.107T>A	c.(106-108)GTA>GAA	p.V36E	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						TTTGCAGCGTACGACCACCAC	0.562000													12	30					0	0	0	0
FAM160B1	57700	broad.mit.edu	37	10	116590627	116590627	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr10:116590627C>G	uc001lcb.2	+	2	397	c.62C>G	c.(61-63)CCT>CGT	p.P21R	FAM160B1_uc001lcc.2_Missense_Mutation_p.P21R	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	21										lung(1)	1						CCTTCTCTTCCTTTACAAGAA	0.318000													27	52					0	0	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587000													7	40					0	0	0	0
ZNF214	7761	broad.mit.edu	37	11	7021319	7021319	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:7021319C>T	uc001mfa.2	-	3	1898	c.1595G>A	c.(1594-1596)GGA>GAA	p.G532E	ZNF214_uc010ray.1_Missense_Mutation_p.G532E|ZNF214_uc009yfh.1_Missense_Mutation_p.G532E	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	532	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		AAAACCCTTTCCACAATCATG	0.413000													34	36					0	0	0	0
RRAS2	22800	broad.mit.edu	37	11	14316390	14316390	+	Missense_Mutation	SNP	T	A	A	rs113954997		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:14316390T>A	uc001mlf.3	-	3	528	c.215A>T	c.(214-216)CAA>CTA	p.Q72L	RRAS2_uc009ygq.2_5'UTR|RRAS2_uc010rco.1_Missense_Mutation_p.Q78L	NM_012250	NP_036382	P62070	RRAS2_HUMAN	related RAS viral (r-ras) oncogene homolog 2	72	GTP (By similarity).		Q -> L (in an ovarian cancer sample; somatic mutation).			endoplasmic reticulum|plasma membrane	GTP binding|GTPase activity|protein binding			breast(1)	1				Epithelial(150;0.203)		AAACTCTTCTTGTCCTGCTGT	0.393000													59	47					0	0	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68696742	68696742	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:68696742C>T	uc001ook.1	+	8	1254	c.1152C>T	c.(1150-1152)AGC>AGT	p.S384S	IGHMBP2_uc001ooj.1_RNA|IGHMBP2_uc001ool.1_5'Flank	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	384	Leu-rich.				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TCGAGGCGAGCTGCTGGATCC	0.622000													64	112					0	0	0	0
DLG2	1740	broad.mit.edu	37	11	84996292	84996292	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:84996292C>T	uc001pak.2	-	4	470	c.158G>A	c.(157-159)TGC>TAC	p.C53Y		NM_001142699	NP_001136171	Q15700	DLG2_HUMAN	chapsyn-110 isoform 1	Error:Variant_position_missing_in_Q15700_after_alignment						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCTGTCATGGCACGGAGCAAG	0.383000													50	111					0	0	0	0
TMEM133	83935	broad.mit.edu	37	11	100863058	100863058	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:100863058G>T	uc001pgf.2	+	1	248	c.19G>T	c.(19-21)GTA>TTA	p.V7L		NM_032021	NP_114410	Q9H2Q1	TM133_HUMAN	transmembrane protein 133	7						integral to membrane					0		Acute lymphoblastic leukemia(157;0.000869)|all_hematologic(158;0.014)		BRCA - Breast invasive adenocarcinoma(274;0.0675)		ACATCACTGCGTAGGACCCGG	0.428000													24	46					7.87624e-14	8.97017e-14	1	0
MCAM	4162	broad.mit.edu	37	11	119181165	119181165	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:119181165G>A	uc001pwf.2	-	15	1834	c.1805C>T	c.(1804-1806)CCG>CTG	p.P602L	MCAM_uc001pwg.1_Intron	NM_006500	NP_006491	P43121	MUC18_HUMAN	melanoma cell adhesion molecule	602	Cytoplasmic (Potential).				anatomical structure morphogenesis|cell adhesion	integral to membrane|plasma membrane				ovary(2)|breast(1)|central_nervous_system(1)	4		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.78e-05)		CTTACGAGACGGGGGTAGCGT	0.587000													64	111					0	0	0	0
ROBO4	54538	broad.mit.edu	37	11	124756993	124756993	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:124756993G>T	uc001qbg.2	-	15	2455	c.2315C>A	c.(2314-2316)CCA>CAA	p.P772Q	ROBO4_uc010sas.1_Missense_Mutation_p.P627Q|ROBO4_uc001qbh.2_Missense_Mutation_p.P662Q|ROBO4_uc001qbi.2_Missense_Mutation_p.P330Q	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	772	Pro/Ser-rich.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		ACTGGAAGCTGGGCTGGGGCC	0.652000													14	37					1.49906e-05	1.61741e-05	1	0
RECQL	5965	broad.mit.edu	37	12	21630754	21630754	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:21630754G>A	uc001rex.2	-	8	1198	c.850C>T	c.(850-852)CCA>TCA	p.P284S	RECQL_uc001rey.2_Missense_Mutation_p.P284S	NM_032941	NP_116559	P46063	RECQ1_HUMAN	RecQ protein-like	284					DNA recombination|DNA repair|DNA replication	nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|DNA strand annealing activity|protein binding			ovary(1)|lung(1)	2						TATAGATTTGGCCTATTAAAA	0.328000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					18	52					0	0	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918866	21918866	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:21918866G>A	uc001rff.2	-	3	1404	c.1066C>T	c.(1066-1068)CGA>TGA	p.R356*		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	356	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	TCCAGCTCTCGGGCACTGCAC	0.463000													61	155					0	0	0	0
FAM113B	91523	broad.mit.edu	37	12	47629946	47629946	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:47629946T>C	uc001rpn.2	+	4	1831	c.1100T>C	c.(1099-1101)TTC>TCC	p.F367S	FAM113B_uc001rpq.2_Missense_Mutation_p.F367S	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	367	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CATGCAGGTTTCTTCGTCGAA	0.522000													88	182					0	0	0	0
MLL2	8085	broad.mit.edu	37	12	49420628	49420628	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:49420628C>T	uc001rta.3	-	48	15121	c.15121G>A	c.(15121-15123)GGG>AGG	p.G5041R		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5041					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCAGTGGCCCCGTCACCCTCC	0.607000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			24	114					0	0	0	0
LRRC10	376132	broad.mit.edu	37	12	70004207	70004207	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:70004207C>T	uc001svc.2	-	1	736	c.412G>A	c.(412-414)GAT>AAT	p.D138N		NM_201550	NP_963844	Q5BKY1	LRC10_HUMAN	leucine rich repeat containing 10	138	LRR 4.					nucleus					0	all_cancers(2;2.83e-105)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;1.98e-18)|GBM - Glioblastoma multiforme(2;7.43e-12)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			CAGACCACATCCGGCAGCTGG	0.632000													22	107					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78225481	78225481	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:78225481C>A	uc001syp.2	+	1	413	c.240C>A	c.(238-240)AGC>AGA	p.S80R	NAV3_uc001syo.2_Missense_Mutation_p.S80R	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	80	CH.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AAGAAGACAGCAAGGTTAGTT	0.413000										HNSCC(70;0.22)			38	13					8.16277e-20	9.6309e-20	1	0
WSCD2	9671	broad.mit.edu	37	12	108634152	108634152	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:108634152C>T	uc001tms.2	+	8	1920	c.1176C>T	c.(1174-1176)AGC>AGT	p.S392S	WSCD2_uc001tmt.2_Silent_p.S392S|WSCD2_uc001tmu.2_Silent_p.S140S	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	392						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						ACTGGCGCAGCGGACGGACCA	0.607000													118	58					0	0	0	0
SELPLG	6404	broad.mit.edu	37	12	109016914	109016914	+	Silent	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:109016914C>A	uc001tni.2	-	2	1330	c.1170G>T	c.(1168-1170)CCG>CCT	p.P390P	SELPLG_uc001tnh.2_Silent_p.P380P|SELPLG_uc010sxe.1_Silent_p.P406P	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	390	Cytoplasmic (Potential).				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						GCGTCAGGCCCGGGCTCTTGG	0.642000													19	5					1.15919e-05	1.25898e-05	1	0
BRCA2	675	broad.mit.edu	37	13	32972595	32972595	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr13:32972595A>T	uc001uub.1	+	27	10172	c.9945A>T	c.(9943-9945)AAA>AAT	p.K3315N		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	3315					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		TAAAGAAAAAAGAACTGAATT	0.368000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			33	54					0	0	0	0
SUGT1	10910	broad.mit.edu	37	13	53233376	53233376	+	Missense_Mutation	SNP	A	G	G	rs12875900		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr13:53233376A>G	uc001vhc.2	+	5	545	c.320A>G	c.(319-321)AAA>AGA	p.K107R	SUGT1_uc001vha.2_RNA|SUGT1_uc001vhb.2_Missense_Mutation_p.K107R|SUGT1_uc010thb.1_Missense_Mutation_p.K51R|SUGT1_uc001vhd.2_5'UTR	NM_001130912	NP_001124384	Q9Y2Z0	SUGT1_HUMAN	suppressor of G2 allele of SKP1 isoform a	107	TPR 3.				mitosis	kinetochore|ubiquitin ligase complex	binding				0		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.25e-08)		GAAGGACAAAAATTAGATAGT	0.249000													12	12					0	0	0	0
RASA3	22821	broad.mit.edu	37	13	114758033	114758033	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr13:114758033C>G	uc001vui.2	-	22	2304	c.2173G>C	c.(2173-2175)GAT>CAT	p.D725H	RASA3_uc010tkk.1_Missense_Mutation_p.D693H|RASA3_uc001vuj.2_Missense_Mutation_p.D342H	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	725					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			CGGTCCCCATCAATGTCCAGC	0.483000													16	31					0	0	0	0
KTN1	3895	broad.mit.edu	37	14	56142559	56142559	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr14:56142559G>C	uc001xcb.2	+	42	4080	c.3778G>C	c.(3778-3780)GCA>CCA	p.A1260P	KTN1_uc001xce.2_Missense_Mutation_p.A1203P|KTN1_uc001xcc.2_Missense_Mutation_p.A1260P|KTN1_uc001xcd.2_Missense_Mutation_p.A1209P|KTN1_uc010trb.1_Missense_Mutation_p.A1232P|KTN1_uc001xcf.1_Missense_Mutation_p.A1209P|KTN1_uc010aoq.2_Missense_Mutation_p.A498P|KTN1_uc010trc.1_Missense_Mutation_p.A237P|KTN1_uc001xcg.2_Missense_Mutation_p.A193P	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	1260	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						ACAGTTGAAGGCACAGTTAAA	0.368000			T	RET	papillary thryoid								15	46					0	0	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633852	70633852	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr14:70633852A>T	uc001xly.2	-	2	2042	c.1288T>A	c.(1288-1290)TAT>AAT	p.Y430N	SLC8A3_uc001xlw.2_Missense_Mutation_p.Y430N|SLC8A3_uc001xlx.2_Missense_Mutation_p.Y430N|SLC8A3_uc001xlz.2_Missense_Mutation_p.Y430N|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	430	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TAGTCCACATACATGGTCTTT	0.522000													73	112					0	0	0	0
C14orf102	55051	broad.mit.edu	37	14	90767686	90767686	+	Missense_Mutation	SNP	C	T	T	rs150270537		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr14:90767686C>T	uc001xyi.1	-	7	1473	c.1442G>A	c.(1441-1443)CGG>CAG	p.R481Q	C14orf102_uc010atp.1_5'UTR|C14orf102_uc001xyj.1_Missense_Mutation_p.R250Q	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	481							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		GCCAGCCTGCCGCAGAAAGTG	0.517000													20	32					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106091490	106091490	+	RNA	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr14:106091490C>T	uc010tyt.1	-	3647		c.62018G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						CTCAGGGGTCCGGGAGATCAT	0.592000													44	237					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106092259	106092259	+	RNA	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr14:106092259C>T	uc010tyt.1	-	3645		c.61759G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GTGTGCACGCCGCTGGTCAGG	0.652000													13	64					0	0	0	0
MKRN3	7681	broad.mit.edu	37	15	23811475	23811475	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr15:23811475C>T	uc001ywh.3	+	1	1022	c.546C>T	c.(544-546)GCC>GCT	p.A182A	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Silent_p.A182A	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	182						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		TCTTTGAAGCCGAGAGAGACA	0.617000													22	32					0	0	0	0
CHST14	113189	broad.mit.edu	37	15	40763950	40763950	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr15:40763950C>A	uc001zlw.2	+	1	738	c.538C>A	c.(538-540)CTC>ATC	p.L180I		NM_130468	NP_569735	Q8NCH0	CHSTE_HUMAN	dermatan 4 sulfotransferase 1	180	Lumenal (Potential).				carbohydrate biosynthetic process|dermatan sulfate proteoglycan metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity|phosphate binding				0		all_cancers(109;2.34e-14)|all_epithelial(112;1.08e-11)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0781)		GGACGTCCGCCTCAAGATGGA	0.602000													39	51					2.35958e-20	2.82461e-20	1	0
LIPC	3990	broad.mit.edu	37	15	58834054	58834054	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr15:58834054T>C	uc010bga.1	+	5	952	c.344T>C	c.(343-345)GTG>GCG	p.V115A	LIPC_uc010bfz.1_Missense_Mutation_p.V115A|LIPC_uc002afa.1_Missense_Mutation_p.V115A|LIPC_uc010bgb.1_Missense_Mutation_p.V13A|LIPC_uc010ugy.1_Intron	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	115					cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		GCCCAGCCAGTGAACGTGGGG	0.652000													15	24					0	0	0	0
CLEC16A	23274	broad.mit.edu	37	16	11097000	11097000	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr16:11097000C>T	uc002dao.2	+	11	1371	c.1141C>T	c.(1141-1143)CAC>TAC	p.H381Y	CLEC16A_uc002dan.3_Missense_Mutation_p.H379Y	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	381										ovary(1)|central_nervous_system(1)	2						GATGAACAAGCACAAGGGCAA	0.537000													13	34					0	0	0	0
CDH8	1006	broad.mit.edu	37	16	61859022	61859022	+	Silent	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr16:61859022A>T	uc002eog.1	-	5	981	c.729T>A	c.(727-729)GTT>GTA	p.V243V	CDH8_uc002eoh.2_Silent_p.V12V	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	243	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TGGCTTGGATAACAACCAGGT	0.458000													16	72					0	0	0	0
CDH3	1001	broad.mit.edu	37	16	68729736	68729736	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr16:68729736C>T	uc002ewf.2	+	15	3322	c.2190C>T	c.(2188-2190)CTC>CTT	p.L730L	CDH3_uc010vli.1_Silent_p.L675L	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	730	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		AGGTGGTTCTCCGCAATGACG	0.582000													73	62					0	0	0	0
SF3B3	23450	broad.mit.edu	37	16	70590203	70590203	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr16:70590203A>T	uc002ezf.2	+	14	2043	c.1832A>T	c.(1831-1833)GAC>GTC	p.D611V		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	611					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				GGGCTTGTGGACAACACTGTC	0.542000													84	179					0	0	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76555134	76555134	+	Silent	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr16:76555134T>C	uc002feu.1	+	18	2848	c.2463T>C	c.(2461-2463)TTT>TTC	p.F821F	CNTNAP4_uc002fev.1_Silent_p.F685F|CNTNAP4_uc010chb.1_Silent_p.F748F|CNTNAP4_uc002fex.1_Silent_p.F824F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	821	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CTTTCTTTTTTAAGACAACAG	0.408000													62	202					0	0	0	0
FBXO31	79791	broad.mit.edu	37	16	87376494	87376494	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr16:87376494C>A	uc002fjw.2	-	5	765	c.721G>T	c.(721-723)GGG>TGG	p.G241W	FBXO31_uc010vot.1_Missense_Mutation_p.G69W|FBXO31_uc002fjv.2_Missense_Mutation_p.G133W	NM_024735	NP_079011	Q5XUX0	FBX31_HUMAN	F-box protein 31	241					cell cycle|cyclin catabolic process|mitotic cell cycle G1/S transition DNA damage checkpoint|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SCF ubiquitin ligase complex	cyclin binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0272)		TCCTGCCTCCCGCCGGACATC	0.557000													9	8					0.00621372	0.00657451	1	0
ZC3H18	124245	broad.mit.edu	37	16	88689626	88689626	+	Splice_Site	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr16:88689626G>A	uc002fky.2	+	10	1868	c.1668_splice	c.e10-1	p.R556_splice	ZC3H18_uc010voz.1_Splice_Site_p.R580_splice|ZC3H18_uc010chw.2_Splice_Site	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18							nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		GCCCGCCCCAGGTCGTCTTCG	0.512000													29	25					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578553	7578553	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr17:7578553T>C	uc002gim.2	-	5	571	c.377A>G	c.(376-378)TAC>TGC	p.Y126C	TP53_uc002gig.1_Missense_Mutation_p.Y126C|TP53_uc002gih.2_Missense_Mutation_p.Y126C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'UTR|TP53_uc010cng.1_5'UTR|TP53_uc002gii.1_5'UTR|TP53_uc010cnh.1_Missense_Mutation_p.Y126C|TP53_uc010cni.1_Missense_Mutation_p.Y126C|TP53_uc002gij.2_Missense_Mutation_p.Y126C|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.Y33C|TP53_uc002gio.2_5'UTR|TP53_uc010vug.1_Missense_Mutation_p.Y87C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	126	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		Y -> H (in sporadic cancers; somatic mutation).|Y -> N (in sporadic cancers; somatic mutation).|Y -> F (in a sporadic cancer; somatic mutation).|Y -> C (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|Y -> D (in sporadic cancers; somatic mutation).|Y -> S (in sporadic cancers; somatic mutation).|Y -> G (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Y126*(9)|p.0?(7)|p.Y126N(6)|p.Y126_K132delYSPALNK(6)|p.Y126C(4)|p.Y126D(3)|p.Y126_N131delYSPALN(3)|p.Y126S(2)|p.V73fs*9(1)|p.?(1)|p.Y126Y(1)|p.Y126fs*11(1)|p.P13fs*18(1)|p.T125_Y126insX(1)|p.Y126fs*24(1)|p.Y126fs*18(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGCAGGGGAGTACTGTAGGAA	0.557000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			44	10					0	0	0	0
MYH4	4622	broad.mit.edu	37	17	10369589	10369589	+	Splice_Site	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr17:10369589C>A	uc002gmn.2	-	4	459	c.348_splice	c.e4+1	p.Y116_splice	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle						muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						AGGGTGCTCACGTAGATCATC	0.433000													43	85					1.56793e-16	1.79818e-16	1	0
Unknown	0	broad.mit.edu	37	17	25749187	25749187	+	RNA	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr17:25749187G>A	uc002gzg.2	+	6		c.1088G>A			uc002gzh.1_5'Flank					Homo sapiens similar to ubiquitin specific protease 6, mRNA (cDNA clone IMAGE:5168266), with apparent retained intron.																		GAGTGTATAAGGGCATTCCCA	0.498000													13	20					0	0	0	0
ITGB3	3690	broad.mit.edu	37	17	45368453	45368453	+	Missense_Mutation	SNP	C	T	T	rs147758772		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr17:45368453C>T	uc002ilj.2	+	9	1279	c.1259C>T	c.(1258-1260)ACG>ATG	p.T420M	ITGB3_uc002ili.1_Missense_Mutation_p.T420M|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	420	Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	ATTGGAGACACGGTGAGGTGG	0.542000													30	84					0	0	0	0
KCNJ2	3759	broad.mit.edu	37	17	68171810	68171810	+	Silent	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr17:68171810G>A	uc010dfg.2	+	2	1031	c.630G>A	c.(628-630)TTG>TTA	p.L210L	KCNJ2_uc002jir.2_Silent_p.L210L	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	210	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					AGCTGTGTTTGATGTGGCGAG	0.498000													34	56					0	0	0	0
CDR2L	30850	broad.mit.edu	37	17	72998278	72998278	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr17:72998278C>T	uc002jml.3	+	4	873	c.461C>T	c.(460-462)ACC>ATC	p.T154I		NM_014603	NP_055418	Q86X02	CDR2L_HUMAN	cerebellar degeneration-related protein 2-like	154											0	all_lung(278;0.226)					CGCAGGCGTACCATCCACACC	0.647000													10	14					0	0	0	0
EVPL	2125	broad.mit.edu	37	17	74019475	74019475	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr17:74019475C>T	uc002jqi.2	-	4	606	c.378G>A	c.(376-378)GTG>GTA	p.V126V	EVPL_uc010wss.1_Silent_p.V126V|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	126	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						ACTCCTGGGTCACCCGCTCGT	0.672000													28	72					0	0	0	0
MAST1	22983	broad.mit.edu	37	19	12975624	12975624	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr19:12975624C>T	uc002mvm.2	+	13	1496	c.1368C>T	c.(1366-1368)GGC>GGT	p.G456G		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	456	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GGCCTGCAGGCGGCGACTGTG	0.507000													19	36					0	0	0	0
SLC5A5	6528	broad.mit.edu	37	19	18001748	18001748	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr19:18001748C>T	uc002nhr.3	+	14	2052	c.1705C>T	c.(1705-1707)CGG>TGG	p.R569W		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	569	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GGACCTCGCACGGCAGACAGC	0.602000													75	130					0	0	0	0
ZNF285	26974	broad.mit.edu	37	19	44890792	44890792	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr19:44890792G>C	uc002ozd.3	-	4	1702	c.1615C>G	c.(1615-1617)CCC>GCC	p.P539A	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.P546A	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	539					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						CACTTATAGGGCCTCTCTCTT	0.438000													39	19					0	0	0	0
ZNF83	55769	broad.mit.edu	37	19	53117347	53117347	+	Silent	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr19:53117347G>A	uc002pzu.3	-	2	1715	c.471C>T	c.(469-471)GTC>GTT	p.V157V	ZNF83_uc002pzv.3_Silent_p.V157V|ZNF83_uc010eps.2_Silent_p.V157V|ZNF83_uc010ept.2_Silent_p.V157V|ZNF83_uc010epu.2_Silent_p.V157V|ZNF83_uc010epv.2_Silent_p.V157V|ZNF83_uc010epw.2_Silent_p.V157V|ZNF83_uc010epx.2_Silent_p.V157V|ZNF83_uc010epy.2_Silent_p.V157V|ZNF83_uc010epz.2_Silent_p.V157V|ZNF83_uc010eqb.1_Silent_p.V157V	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	157	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TATTATGGAAGACCTTGCCAC	0.353000													16	25					0	0	0	0
LILRA4	23547	broad.mit.edu	37	19	54850163	54850163	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr19:54850163A>G	uc002qfj.2	-	2	101	c.44T>C	c.(43-45)CTG>CCG	p.L15P	LILRA4_uc002qfi.2_5'UTR	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	15						integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CCTGGGGCCCAGGCTCAGCCC	0.622000											OREG0003656	type=REGULATORY REGION|Gene=LILRA4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	25	22					0	0	0	0
MYT1L	23040	broad.mit.edu	37	2	1843127	1843127	+	Silent	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:1843127C>A	uc002qxe.2	-	21	3701	c.2874G>T	c.(2872-2874)GGG>GGT	p.G958G	MYT1L_uc002qxd.2_Silent_p.G956G|MYT1L_uc010ewk.2_5'UTR	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	958	C2HC-type 5.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GGCCGTCGCACCCGGGGACCG	0.617000													33	59					2.75727e-19	3.20704e-19	1	0
AGBL5	60509	broad.mit.edu	37	2	27276859	27276859	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:27276859C>A	uc002rie.2	+	4	700	c.483C>A	c.(481-483)TAC>TAA	p.Y161*	AGBL5_uc002ric.2_Nonsense_Mutation_p.Y161*|AGBL5_uc002rid.2_Nonsense_Mutation_p.Y161*|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	161					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTTCTCCTACAGTGACTGCC	0.552000													75	129					4.2702e-19	4.93178e-19	1	0
APLF	200558	broad.mit.edu	37	2	68772422	68772422	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:68772422C>G	uc002sep.2	+	8	1437	c.1264C>G	c.(1264-1266)CCC>GCC	p.P422A	APLF_uc002seq.1_RNA|APLF_uc010fdf.2_Missense_Mutation_p.P398A|APLF_uc002ser.1_Missense_Mutation_p.P153A	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	422	PBZ-type 2.				double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						GCCTGAATGTCCCTATGGACC	0.423000													29	67					0	0	0	0
FER1L5	90342	broad.mit.edu	37	2	97361486	97361486	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:97361486C>T	uc010fia.2	+	35	3983	c.3983C>T	c.(3982-3984)CCG>CTG	p.P1328L	FER1L5_uc002sws.3_Missense_Mutation_p.P46L|FER1L5_uc010fib.1_RNA|FER1L5_uc002swt.3_Missense_Mutation_p.P46L|FER1L5_uc010yus.1_Missense_Mutation_p.P45L	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	1328						integral to membrane				ovary(1)	1						CAGCTCATGCCGACGGAGGAG	0.642000													10	18					0	0	0	0
SAP130	79595	broad.mit.edu	37	2	128775458	128775458	+	Silent	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:128775458G>A	uc002tpp.2	-	3	354	c.222C>T	c.(220-222)GTC>GTT	p.V74V	SAP130_uc002tpo.2_5'Flank|SAP130_uc010fmd.2_Silent_p.V74V|SAP130_uc002tpq.1_Silent_p.V48V	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	74					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		CCCTGGCACTGACTTCAGAAT	0.498000													29	62					0	0	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555887	155555887	+	Silent	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:155555887G>T	uc002tyv.1	+	1	795	c.600G>T	c.(598-600)GCG>GCT	p.A200A	KCNJ3_uc010zce.1_Silent_p.A200A	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	200	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	GCGAGCACGCGGTGATCTCCA	0.597000													4	33					0.00909568	0.00944109	1	0
TTN	7273	broad.mit.edu	37	2	179484368	179484368	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:179484368C>G	uc010zfg.1	-	199	39196	c.38972G>C	c.(38971-38973)AGA>ACA	p.R12991T	TTN_uc010zfh.1_Missense_Mutation_p.R6686T|TTN_uc010zfi.1_Missense_Mutation_p.R6619T|TTN_uc010zfj.1_Missense_Mutation_p.R6494T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13918							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGCTTAGCTCTGGCTTCTTT	0.373000													35	57					0	0	0	0
SLC39A10	57181	broad.mit.edu	37	2	196592977	196592977	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:196592977C>T	uc002utg.3	+	9	2455	c.2241C>T	c.(2239-2241)CTC>CTT	p.L747L	SLC39A10_uc002uth.3_Silent_p.L747L|SLC39A10_uc010zgp.1_Silent_p.L297L	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	747	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			TAGGCATGCTCATAGGCACAG	0.443000													8	192					0	0	0	0
ARPC2	10109	broad.mit.edu	37	2	219110167	219110167	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:219110167A>T	uc002vhd.2	+	8	686	c.574A>T	c.(574-576)AGC>TGC	p.S192C	ARPC2_uc002vhe.2_Missense_Mutation_p.S192C|ARPC2_uc002vhf.2_Missense_Mutation_p.S78C	NM_152862	NP_690601	O15144	ARPC2_HUMAN	actin related protein 2/3 complex subunit 2	192					cellular component movement	Arp2/3 protein complex|cell projection|Golgi apparatus	actin binding|structural constituent of cytoskeleton			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;1.21e-06)|all cancers(144;0.000212)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0103)		ACGCAGAGCCAGCCACACAGC	0.512000													6	152					0	0	0	0
RNF24	11237	broad.mit.edu	37	20	3914726	3914726	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr20:3914726G>A	uc002wkh.2	-	6	701	c.431C>T	c.(430-432)GCA>GTA	p.A144V	RNF24_uc002wki.2_Missense_Mutation_p.A165V|RNF24_uc002wkj.2_Missense_Mutation_p.A144V	NM_007219	NP_009150	Q9Y225	RNF24_HUMAN	ring finger protein 24 isoform 1	144						Golgi membrane|integral to membrane	zinc ion binding				0						AATGTTCTCTGCCCCAGGAAG	0.562000													67	102					0	0	0	0
FRG1B	284802	broad.mit.edu	37	20	29614328	29614328	+	Splice_Site	SNP	G	A	A	rs137860963	by1000genomes	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr20:29614328G>A	uc010ztk.1	+	1	67	c.-6_splice	c.e1+1		FRG1B_uc002wvm.1_Splice_Site|FRG1B_uc010ztj.1_Splice_Site|FRG1B_uc010gdr.1_Splice_Site					RecName: Full=Protein FRG1B;												0						TGATACGTTGGTGAGTCAGTT	0.219000													4	31					0	0	0	0
PHACTR3	116154	broad.mit.edu	37	20	58349395	58349395	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr20:58349395G>C	uc002yau.2	+	7	1491	c.1024G>C	c.(1024-1026)GCT>CCT	p.A342P	PHACTR3_uc002yat.2_Missense_Mutation_p.A339P|PHACTR3_uc010zzw.1_Missense_Mutation_p.A301P|PHACTR3_uc002yav.2_Missense_Mutation_p.A301P|PHACTR3_uc002yaw.2_Missense_Mutation_p.A301P|PHACTR3_uc002yax.2_Missense_Mutation_p.A231P	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	342						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			GAGGGAGGAGGCTTGGAGCTT	0.512000													35	48					0	0	0	0
TCFL5	10732	broad.mit.edu	37	20	61488812	61488812	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr20:61488812C>T	uc002ydp.2	-	4	1266	c.1173G>A	c.(1171-1173)CAG>CAA	p.Q391Q	TCFL5_uc002ydo.2_Silent_p.Q164Q|TCFL5_uc002ydq.2_Silent_p.Q390Q	NM_006602	NP_006593	Q9UL49	TCFL5_HUMAN	transcription factor-like 5 protein	391					cell differentiation|multicellular organismal development|regulation of cell differentiation|regulation of cell proliferation|spermatogenesis|transcription from RNA polymerase II promoter		DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)	1	Breast(26;5.68e-08)					GGGGCCCACTCTGGGCCTGCT	0.572000													166	49					0	0	0	0
DSCAM	1826	broad.mit.edu	37	21	41684252	41684252	+	Silent	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr21:41684252T>C	uc002yyq.1	-	9	2270	c.1818A>G	c.(1816-1818)AGA>AGG	p.R606R	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	606	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAATGGAGAATCTTGGAAACT	0.478000													16	29					0	0	0	0
Unknown	0	broad.mit.edu	37	22	18844763	18844763	+	RNA	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr22:18844763T>C	uc002zoe.2	+	4		c.2017T>C			uc002zof.2_5'Flank					Homo sapiens cDNA FLJ76361 complete cds.																		TCACAGCCTCTGAGGGCAGCA	0.562000													4	12					0	0	0	0
MYO18B	84700	broad.mit.edu	37	22	26242142	26242142	+	Silent	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr22:26242142C>G	uc003abz.1	+	19	3694	c.3444C>G	c.(3442-3444)GGC>GGG	p.G1148G	MYO18B_uc003aca.1_Silent_p.G1029G|MYO18B_uc010guy.1_Silent_p.G1030G|MYO18B_uc010guz.1_Silent_p.G1029G|MYO18B_uc011aka.1_Silent_p.G302G|MYO18B_uc011akb.1_Silent_p.G661G	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1148	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCCTGGAGGGCACCTCCCAGC	0.667000													10	23					0	0	0	0
ADM2	79924	broad.mit.edu	37	22	50921172	50921172	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr22:50921172C>T	uc003blj.2	+	2	552	c.287C>T	c.(286-288)TCG>TTG	p.S96L	ADM2_uc011ary.1_Missense_Mutation_p.S96L	NM_024866	NP_079142	Q7Z4H4	ADM2_HUMAN	adrenomedullin 2 precursor	96					positive regulation of angiogenesis	extracellular region	hormone activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CGAAGACACTCGGGCCCCCGC	0.697000													18	11					0	0	0	0
CLDND1	56650	broad.mit.edu	37	3	98240121	98240121	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:98240121T>A	uc003dsp.2	-	2	1028	c.148A>T	c.(148-150)ATC>TTC	p.I50F	CLDND1_uc003dso.2_Missense_Mutation_p.I50F|CLDND1_uc003dsq.2_Missense_Mutation_p.I50F|CLDND1_uc003dss.2_Missense_Mutation_p.I50F|CLDND1_uc003dsr.2_Intron|CLDND1_uc003dst.2_Missense_Mutation_p.I73F|CLDND1_uc003dsu.2_Missense_Mutation_p.I50F|CLDND1_uc003dsv.2_Missense_Mutation_p.I50F	NM_019895	NP_063948	Q9NY35	CLDN1_HUMAN	claudin domain containing 1 protein isoform a	50						integral to membrane				ovary(1)	1						TCATCCCAGATGCTTTTATTC	0.413000													39	67					0	0	0	0
MORC1	27136	broad.mit.edu	37	3	108773582	108773582	+	Silent	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:108773582G>T	uc003dxl.2	-	14	1410	c.1323C>A	c.(1321-1323)ACC>ACA	p.T441T	MORC1_uc011bhn.1_Silent_p.T441T	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	441					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CACTGATGCCGGTGTCCTTAC	0.373000													62	99					2.03652e-46	2.474e-46	1	0
ALDH1L1	10840	broad.mit.edu	37	3	125856801	125856801	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:125856801A>T	uc003eim.1	-	10	1269	c.1079T>A	c.(1078-1080)CTG>CAG	p.L360Q	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.L259Q|ALDH1L1_uc003eio.2_Missense_Mutation_p.L62Q|ALDH1L1_uc010hsf.1_Missense_Mutation_p.L386Q	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	360	Acyl carrier.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TTCCTCCACCAGCCTGGAGGA	0.567000													45	42					0	0	0	0
SI	6476	broad.mit.edu	37	3	164739124	164739124	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:164739124G>T	uc003fei.2	-	27	3209	c.3147C>A	c.(3145-3147)AAC>AAA	p.N1049K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1049	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGGTTGGAATGTTTAACGGTA	0.368000										HNSCC(35;0.089)			360	225					1.92225e-182	2.3526e-182	1	0
SERPINI1	5274	broad.mit.edu	37	3	167525052	167525052	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:167525052T>A	uc003ffa.3	+	6	1100	c.902T>A	c.(901-903)ATT>AAT	p.I301N	SERPINI1_uc003ffb.3_Missense_Mutation_p.I301N	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	301					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						GAACAGGAAATTGATTTAAAA	0.338000													67	235					0	0	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540249	169540249	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:169540249C>T	uc003fgb.2	+	1	540	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	180	LRR 7.										0						TTGAAGTTTTCCCCCAGGAGC	0.517000													29	262					0	0	0	0
SKIL	6498	broad.mit.edu	37	3	170102443	170102443	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:170102443A>G	uc003fgu.2	+	4	2031	c.1319A>G	c.(1318-1320)AAG>AGG	p.K440R	SKIL_uc011bps.1_Missense_Mutation_p.K420R|SKIL_uc003fgv.2_Intron|SKIL_uc003fgw.2_Missense_Mutation_p.K440R	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	440					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			CAGTCAGAGAAGGCTCACAGT	0.398000													77	401					0	0	0	0
PEX5L	51555	broad.mit.edu	37	3	179592166	179592166	+	Missense_Mutation	SNP	G	C	C	rs139208096		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:179592166G>C	uc003fki.1	-	7	805	c.675C>G	c.(673-675)AGC>AGG	p.S225R	PEX5L_uc011bqd.1_Missense_Mutation_p.S182R|PEX5L_uc011bqe.1_Missense_Mutation_p.S33R|PEX5L_uc011bqf.1_Missense_Mutation_p.S117R|PEX5L_uc003fkj.1_Missense_Mutation_p.S190R|PEX5L_uc010hxd.1_Missense_Mutation_p.S223R|PEX5L_uc011bqg.1_Missense_Mutation_p.S201R|PEX5L_uc011bqh.1_Missense_Mutation_p.S166R	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	225					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			AGTTGAGGGCGCTTTTTCCAC	0.393000													75	202					0	0	0	0
CCDC39	339829	broad.mit.edu	37	3	180397180	180397180	+	Translation_Start_Site	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:180397180G>C	uc010hxe.2	-	1	104	c.-11C>G	c.(-13--9)ATCCG>ATGCG		CCDC39_uc003fkn.2_Intron	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39						axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			ACTGCAAACGGATAGAGAAGA	0.582000													55	432					0	0	0	0
IQCG	84223	broad.mit.edu	37	3	197619560	197619560	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:197619560A>G	uc003fyo.2	-	9	1180	c.1034T>C	c.(1033-1035)CTA>CCA	p.L345P	IQCG_uc003fyn.2_Missense_Mutation_p.L247P|IQCG_uc003fyp.2_Missense_Mutation_p.L345P|IQCG_uc003fym.2_Missense_Mutation_p.L46P	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	345											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		GAGAGCATTTAGTTCATTCTG	0.438000													87	604					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114277023	114277023	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr4:114277023G>A	uc003ibe.3	+	38	7349	c.7249G>A	c.(7249-7251)GAT>AAT	p.D2417N	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Missense_Mutation_p.D2432N	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2384					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCCTAGCCGAGATAGCGAAGT	0.498000													18	24					0	0	0	0
TIGD4	201798	broad.mit.edu	37	4	153691671	153691671	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr4:153691671C>T	uc003imy.2	-	2	1268	c.486G>A	c.(484-486)TGG>TGA	p.W162*		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	162					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					CATTTTGGTACCAGACAGTCG	0.363000													24	21					0	0	0	0
TKTL2	84076	broad.mit.edu	37	4	164393621	164393621	+	Silent	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr4:164393621C>G	uc003iqp.3	-	1	1427	c.1266G>C	c.(1264-1266)GGG>GGC	p.G422G		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	422						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CAGTGGATACCCCACAGTGGG	0.478000													26	21					0	0	0	0
SEMA5A	9037	broad.mit.edu	37	5	9202097	9202097	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:9202097T>C	uc003jek.2	-	9	1614	c.902A>G	c.(901-903)GAT>GGT	p.D301G		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	301	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						ATAGATCAAATCCAGCTCAGG	0.438000													28	49					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13876803	13876803	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:13876803G>T	uc003jfd.2	-	22	3428	c.3386C>A	c.(3385-3387)TCC>TAC	p.S1129Y		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1129	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTTTGGTGGAGTTGATAAT	0.383000									Kartagener_syndrome				20	67					2.52088e-20	2.99582e-20	1	0
PDZD2	23037	broad.mit.edu	37	5	32088330	32088330	+	Silent	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:32088330G>T	uc003jhl.2	+	20	5164	c.4776G>T	c.(4774-4776)TCG>TCT	p.S1592S	PDZD2_uc003jhm.2_Silent_p.S1592S	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1592					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						AAGATCCTTCGGAGTCAGAAG	0.577000													60	97					2.6711e-34	3.22103e-34	1	0
MAP3K1	4214	broad.mit.edu	37	5	56167806	56167806	+	Silent	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:56167806A>T	uc003jqw.3	+	7	1872	c.1371A>T	c.(1369-1371)ACA>ACT	p.T457T		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	457	RING-type.				cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		AAAGTCTTACAGTGTGTGAAG	0.428000													27	30					0	0	0	0
PAPD4	167153	broad.mit.edu	37	5	78936938	78936938	+	Silent	SNP	T	C	C	rs142919591	byFrequency	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:78936938T>C	uc010jae.1	+	7	1009	c.591T>C	c.(589-591)CTT>CTC	p.L197L	PAPD4_uc003kgb.2_Silent_p.L197L|PAPD4_uc010jaf.1_Silent_p.L197L|PAPD4_uc003kga.2_Silent_p.L197L|PAPD4_uc003kfz.2_Silent_p.L197L	NM_001114393	NP_001107865	Q6PIY7	GLD2_HUMAN	PAP associated domain containing 4	197					histone mRNA catabolic process|mRNA processing|RNA polyadenylation	cytoplasm	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity			ovary(1)	1		Lung NSC(167;0.00293)|all_lung(232;0.00323)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;8.61e-47)|Epithelial(54;1.32e-41)|all cancers(79;2.45e-36)		AAAGCAGACTTTTTTTGGTTG	0.318000													8	129					0	0	0	0
LOC100133050	100133050	broad.mit.edu	37	5	99715528	99715528	+	RNA	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:99715528C>T	uc011cuw.1	-	4		c.382G>A				NR_027503				Homo sapiens glucuronidase, beta pseudogene (LOC100133050), non-coding RNA.												0						AGCGGACAGTCGAAGCCCTTC	0.607000													3	7					0	0	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475050	140475051	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:140475050_140475051GG>TA	uc003lil.2	+	1	814_815	c.676_677GG>TA	c.(676-678)GGC>TAC	p.G226Y	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	226	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCCAGGTCCGGCACGGCCCTG	0.579000													17	34					0	0	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735600	140735600	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:140735600C>A	uc003ljq.1	+	1	833	c.833C>A	c.(832-834)ACG>AAG	p.T278K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.T278K	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	278	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGACGTGACGTATTCTTTC	0.458000													11	25					1.58986e-06	1.74992e-06	1	0
FAF2	23197	broad.mit.edu	37	5	175913467	175913467	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr5:175913467G>A	uc003mej.3	+	3	297	c.244G>A	c.(244-246)GTT>ATT	p.V82I		NM_014613	NP_055428	Q96CS3	FAF2_HUMAN	UBX domain containing 8	82					response to unfolded protein	endoplasmic reticulum|lipid particle	protein binding			ovary(1)	1						CTACAGCTATGTTGTCTCAAG	0.443000													42	65					0	0	0	0
RREB1	6239	broad.mit.edu	37	6	7231221	7231221	+	Silent	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr6:7231221G>A	uc003mxc.2	+	10	3279	c.2889G>A	c.(2887-2889)GCG>GCA	p.A963A	RREB1_uc003mxb.2_Silent_p.A963A|RREB1_uc010jnx.2_Silent_p.A963A	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	963					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				AGGAGGAGGCGGGGAGCAGCG	0.632000													17	12					0	0	0	0
HLA-H	3136	broad.mit.edu	37	6	29856552	29856552	+	Missense_Mutation	SNP	C	T	T	rs114099463	by1000genomes	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr6:29856552C>T	uc010jro.2	+	3	599	c.547C>T	c.(547-549)CCT>TCT	p.P183S	HLA-G_uc011dmb.1_Intron|HLA-H_uc003nod.2_Intron					SubName: Full=cDNA FLJ52667, highly similar to HLA class I histocompatibility antigen, alpha chain H;												0						TCCCGGATCGCCTGTAGATCT	0.622000													3	17					0	0	0	0
HLA-A	3105	broad.mit.edu	37	6	29910693	29910693	+	Missense_Mutation	SNP	A	G	G	rs41559716		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr6:29910693A>G	uc003nol.2	+	2	233	c.233A>G	c.(232-234)CAG>CGG	p.Q78R	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Missense_Mutation_p.Q78R|HLA-A_uc003noo.2_Missense_Mutation_p.Q78R|HLA-A_uc010jrr.2_Missense_Mutation_p.Q78R|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Missense_Mutation_p.Q50R|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	78	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						TGGATAGAGCAGGAGGGGCCG	0.657000									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			8	12					0	0	0	0
SASH1	23328	broad.mit.edu	37	6	148840966	148840966	+	Silent	SNP	G	A	A	rs138202713	byFrequency	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr6:148840966G>A	uc003qme.1	+	10	1621	c.1146G>A	c.(1144-1146)CAG>CAA	p.Q382Q	SASH1_uc011eeb.1_Silent_p.Q143Q	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	382							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		AAAAGGCCCAGAAAGTGTCCC	0.547000													4	21					0	0	0	0
MTHFD1L	25902	broad.mit.edu	37	6	151293189	151293189	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr6:151293189T>A	uc003qob.2	+	20	2388	c.2120T>A	c.(2119-2121)TTT>TAT	p.F707Y	MTHFD1L_uc011een.1_RNA|MTHFD1L_uc011eeo.1_Missense_Mutation_p.F708Y|MTHFD1L_uc003qoc.2_Missense_Mutation_p.F655Y	NM_015440	NP_056255	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+	707	Formyltetrahydrofolate synthetase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity			ovary(3)|large_intestine(1)	4		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		GAAGAAGGATTTGTAGGTAAG	0.398000													28	56					0	0	0	0
TIAM2	26230	broad.mit.edu	37	6	155451295	155451295	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr6:155451295C>T	uc003qqb.2	+	6	2211	c.938C>T	c.(937-939)CCC>CTC	p.P313L	TIAM2_uc003qqe.2_Missense_Mutation_p.P313L	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	313					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGCCTCTCCCCCTCAGGTATC	0.557000													27	51					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88962841	88962841	+	Missense_Mutation	SNP	G	A	A	rs139327261	byFrequency	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr7:88962841G>A	uc011khi.1	+	4	1083	c.545G>A	c.(544-546)CGG>CAG	p.R182Q		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	182						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GATAAACAGCGGTCCACCATG	0.418000										HNSCC(36;0.09)			33	69					0	0	0	0
SLC7A2	6542	broad.mit.edu	37	8	17407860	17407860	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr8:17407860T>C	uc011kyc.1	+	5	918	c.749T>C	c.(748-750)ATG>ACG	p.M250T	SLC7A2_uc011kyd.1_Missense_Mutation_p.M290T|SLC7A2_uc011kye.1_Missense_Mutation_p.M290T|SLC7A2_uc011kyf.1_Missense_Mutation_p.M250T	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	250	Helical; (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	GGTGGCTTTATGCCTTATGGC	0.448000													35	18					0	0	0	0
KCNU1	157855	broad.mit.edu	37	8	36766941	36766941	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr8:36766941C>G	uc010lvw.2	+	21	2306	c.2219C>G	c.(2218-2220)GCC>GGC	p.A740G	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	740	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CCCTTGAGAGCCAGCAACTAT	0.458000													93	230					0	0	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70667725	70667725	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr8:70667725T>C	uc003xyl.2	-	4	1899	c.1192A>G	c.(1192-1194)AAA>GAA	p.K398E	SLCO5A1_uc010lzb.2_Missense_Mutation_p.K398E|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Missense_Mutation_p.K398E|SLCO5A1_uc010lzc.2_Missense_Mutation_p.K398E	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	398	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			TTGTTTGATTTCTCCTTCAGA	0.358000													31	40					0	0	0	0
COL14A1	7373	broad.mit.edu	37	8	121228628	121228628	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr8:121228628G>A	uc003yox.2	+	14	1901	c.1636G>A	c.(1636-1638)GTT>ATT	p.V546I	COL14A1_uc003yoy.2_Missense_Mutation_p.V224I|COL14A1_uc010mde.1_Missense_Mutation_p.V224I	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	546	Fibronectin type-III 4.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AATCTCCAATGTTGGCTCTAA	0.353000													49	65					0	0	0	0
FAM135B	51059	broad.mit.edu	37	8	139277978	139277978	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr8:139277978A>G	uc003yuy.2	-	4	436	c.265T>C	c.(265-267)TTC>CTC	p.F89L	FAM135B_uc003yux.2_5'UTR|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	89										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGAACTCGGAAGACCACAGCA	0.488000										HNSCC(54;0.14)			29	50					0	0	0	0
JRK	8629	broad.mit.edu	37	8	143745934	143745934	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr8:143745934C>A	uc003ywo.2	-	3	2056	c.1542G>T	c.(1540-1542)CAG>CAT	p.Q514H	JRK_uc003ywp.2_Missense_Mutation_p.Q514H|JRK_uc010mew.1_Missense_Mutation_p.S515I	NM_001077527	NP_001070995			jerky isoform b												0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;2.31e-05)				GCGCCCgcagctgccccactt	0.343000													4	15					0.00909568	0.00944109	1	0
GLIS3	169792	broad.mit.edu	37	9	4117821	4117821	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:4117821T>C	uc003zhw.1	-	3	1386	c.1192A>G	c.(1192-1194)AAA>GAA	p.K398E	GLIS3_uc003zhx.1_Missense_Mutation_p.K553E|GLIS3_uc003zic.1_Missense_Mutation_p.K553E|GLIS3_uc003zie.1_Missense_Mutation_p.K553E|GLIS3_uc010mhh.1_Missense_Mutation_p.K428E|GLIS3_uc003zid.1_Missense_Mutation_p.K331E|GLIS3_uc010mhi.1_Missense_Mutation_p.K360E|GLIS3_uc003zif.1_Missense_Mutation_p.K331E|GLIS3_uc003zig.1_Missense_Mutation_p.K397E|GLIS3_uc003zih.1_Missense_Mutation_p.K331E|GLIS3_uc003zhy.1_Missense_Mutation_p.K331E|GLIS3_uc003zhz.1_Missense_Mutation_p.K331E|GLIS3_uc003zib.1_Missense_Mutation_p.K397E|GLIS3_uc010mhg.1_Missense_Mutation_p.K331E	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	398	C2H2-type 2; atypical.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		ATCAGCAGTTTATAGCGGGCG	0.567000													69	48					0	0	0	0
ZNF484	83744	broad.mit.edu	37	9	95610231	95610231	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:95610231C>T	uc004asu.1	-	5	987	c.838G>A	c.(838-840)GAA>AAA	p.E280K	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.E282K|ZNF484_uc010mrb.1_Missense_Mutation_p.E244K|ZNF484_uc004asv.1_Missense_Mutation_p.E244K	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	280	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCATGGCATTCATGCTGCTTT	0.428000													34	102					0	0	0	0
KIAA0368	23392	broad.mit.edu	37	9	114173351	114173351	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:114173351T>G	uc004bfe.1	-	23	2820	c.2820A>C	c.(2818-2820)AAA>AAC	p.K940N		NM_001080398	NP_001073867			KIAA0368 protein												0						ACATTCTCATTTTCTTTTTAG	0.418000													188	190					0	0	0	0
PAPPA	5069	broad.mit.edu	37	9	119065052	119065052	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:119065052C>A	uc004bjn.2	+	10	3351	c.2970C>A	c.(2968-2970)TGC>TGA	p.C990*	PAPPA_uc011lxp.1_Nonsense_Mutation_p.C685*|PAPPA_uc011lxq.1_Nonsense_Mutation_p.C365*	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	990					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCAGCCGGTGCTATTTCCATG	0.458000													17	74					0.00278032	0.00298021	1	0
OLFML2A	169611	broad.mit.edu	37	9	127557384	127557384	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:127557384G>A	uc004bov.2	+	3	549	c.436G>A	c.(436-438)GCC>ACC	p.A146T	OLFML2A_uc010mwr.1_Intron	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	146											0						CCACAAGGTGGCCTCCCAGAT	0.652000													5	12					0	0	0	0
OLFML2A	169611	broad.mit.edu	37	9	127566456	127566456	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:127566456G>A	uc004bov.2	+	6	1116	c.1003G>A	c.(1003-1005)GCA>ACA	p.A335T	OLFML2A_uc010mwr.1_Missense_Mutation_p.A299T|OLFML2A_uc004bow.2_Missense_Mutation_p.A121T	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	335											0						GCCCAACTCCGCAGAGCAGGA	0.562000													64	43					0	0	0	0
SCAI	286205	broad.mit.edu	37	9	127715225	127715225	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:127715225C>T	uc004bpe.2	-	18	1763	c.1682G>A	c.(1681-1683)CGA>CAA	p.R561Q	SCAI_uc004bpd.2_Missense_Mutation_p.R584Q|SCAI_uc010mwu.2_RNA	NM_001144877	NP_001138349	Q8N9R8	SCAI_HUMAN	suppressor of cancer cell invasion isoform 2	561					negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|integral to membrane|nucleus	protein binding|transcription corepressor activity			ovary(2)|breast(2)|central_nervous_system(1)	5						TGGATAATTTCGTGTTTCCTG	0.358000													64	45					0	0	0	0
MRPS2	51116	broad.mit.edu	37	9	138395504	138395504	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:138395504A>T	uc004cfv.3	+	4	490	c.416A>T	c.(415-417)AAG>ATG	p.K139M	MRPS2_uc004cfw.3_Missense_Mutation_p.K49M|MRPS2_uc004cfx.3_Missense_Mutation_p.K54M|MRPS2_uc010nat.2_Missense_Mutation_p.K120M|uc004cfy.2_RNA	NM_016034	NP_057118	Q9Y399	RT02_HUMAN	mitochondrial ribosomal protein S2	139					translation	mitochondrion|small ribosomal subunit	structural constituent of ribosome				0				OV - Ovarian serous cystadenocarcinoma(145;1.46e-53)|Epithelial(140;2.04e-47)|all cancers(34;1.23e-42)		GCCTACCGCAAGGGCATCATC	0.577000													30	70					0	0	0	0
NOXA1	10811	broad.mit.edu	37	9	140327704	140327704	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr9:140327704G>T	uc004cmv.2	+	10	1033	c.898G>T	c.(898-900)GCG>TCG	p.A300S	C9orf167_uc011mew.1_Intron|NOXA1_uc004cmu.2_Missense_Mutation_p.A300S|NOXA1_uc010nch.2_Missense_Mutation_p.A244S	NM_006647	NP_006638	Q86UR1	NOXA1_HUMAN	NADPH oxidase activator 1	300			Missing (in NOXA1truncated, a cDNA isolated from Caco-2 cells treated with butyrate).		regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|superoxide metabolic process	cytoplasm|NADPH oxidase complex	Rac GTPase binding|superoxide-generating NADPH oxidase activator activity				0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000238)|Epithelial(140;0.000982)		TGAGGACCCCGCGGGTGCTGG	0.652000													8	11					0.00829132	0.00871651	1	0
CNKSR2	22866	broad.mit.edu	37	X	21515965	21515965	+	Splice_Site	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chrX:21515965G>A	uc004czx.1	+	7	777	c.741_splice	c.e7+1	p.N247_splice	CNKSR2_uc004czw.2_Splice_Site_p.N247_splice|CNKSR2_uc011mjn.1_Splice_Site_p.N247_splice|CNKSR2_uc011mjo.1_Splice_Site_p.N247_splice	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras						regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						CACAGAAAATGTAAGTATTCT	0.308000													22	10					0	0	0	0
NXF3	56000	broad.mit.edu	37	X	102337236	102337236	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chrX:102337236A>C	uc004eju.2	-	9	908	c.837T>G	c.(835-837)TGT>TGG	p.C279W	NXF3_uc010noi.1_Missense_Mutation_p.C129W|NXF3_uc011mrw.1_Missense_Mutation_p.C279W|NXF3_uc011mrx.1_Missense_Mutation_p.C190W	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	279						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TTCTGTCCGCACACTTCTCTC	0.532000													11	129					0	0	0	0
CROCC	9696	broad.mit.edu	37	1	17256382	17256382	+	Silent	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:17256382G>T	uc001azt.2	+	4	462	c.393G>T	c.(391-393)ACG>ACT	p.T131T	CROCC_uc009voy.1_Intron|CROCC_uc009voz.1_5'UTR	NM_014675	NP_055490	Q5TZA2	CROCC_HUMAN	ciliary rootlet coiled-coil	131	Potential.				cell cycle|cell projection organization|centrosome organization|protein localization	actin cytoskeleton|centriole|ciliary rootlet|plasma membrane	kinesin binding|structural molecule activity			ovary(2)|breast(2)|central_nervous_system(1)	5		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000174)|all_lung(284;0.000234)|Renal(390;0.000518)|Ovarian(437;0.00669)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.63e-06)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(64;0.000163)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.181)		AGCTGGAGACGCAGGAGCCCA	0.697000													7	5					0.00307968	0.00324393	1	0
PAFAH2	5051	broad.mit.edu	37	1	26301058	26301058	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:26301058T>G	uc001bld.3	-	9	1022	c.842A>C	c.(841-843)AAT>ACT	p.N281T	PAFAH2_uc001ble.3_Missense_Mutation_p.N281T	NM_000437	NP_000428	Q99487	PAFA2_HUMAN	platelet-activating factor acetylhydrolase 2	281					lipid catabolic process	cytoplasm	1-alkyl-2-acetylglycerophosphocholine esterase activity|phospholipid binding			ovary(2)	2		Colorectal(325;3.47e-05)|Lung NSC(340;6.23e-05)|all_lung(284;9.48e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0155)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.84e-25)|Colorectal(126;3.57e-08)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|BRCA - Breast invasive adenocarcinoma(304;0.00105)|STAD - Stomach adenocarcinoma(196;0.00155)|GBM - Glioblastoma multiforme(114;0.00717)|READ - Rectum adenocarcinoma(331;0.0649)		TTTCTCAGTATTGATAAAGAA	0.468000													19	15					0	0	0	0
ARID1A	8289	broad.mit.edu	37	1	27089635	27089635	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:27089635G>T	uc001bmv.1	+	8	2964	c.2591G>T	c.(2590-2592)GGC>GTC	p.G864V	ARID1A_uc001bmt.1_Missense_Mutation_p.G864V|ARID1A_uc001bmu.1_Missense_Mutation_p.G864V|ARID1A_uc001bmw.1_Missense_Mutation_p.G481V	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	864					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		GCCTCCATGGGCAACCGGCCT	0.587000			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								24	23					3.28513e-13	3.68121e-13	1	0
CLCA2	9635	broad.mit.edu	37	1	86913313	86913313	+	Silent	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:86913313A>G	uc001dlr.3	+	11	1998	c.1836A>G	c.(1834-1836)GAA>GAG	p.E612E		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	612	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		CCTTTGTGGAAAGAGACAGCC	0.493000													55	108					0	0	0	0
AGL	178	broad.mit.edu	37	1	100358058	100358058	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:100358058A>G	uc001dsi.1	+	24	3554	c.3154A>G	c.(3154-3156)AAA>GAA	p.K1052E	AGL_uc001dsj.1_Missense_Mutation_p.K1052E|AGL_uc001dsk.1_Missense_Mutation_p.K1052E|AGL_uc001dsl.1_Missense_Mutation_p.K1052E|AGL_uc001dsm.1_Missense_Mutation_p.K1036E|AGL_uc001dsn.1_Missense_Mutation_p.K1035E	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1052	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		TGGAGTAGGAAAATTCCCTTC	0.378000													29	47					0	0	0	0
NBPF10	100132406	broad.mit.edu	37	1	145293269	145293269	+	5'Flank	SNP	G	A	A	rs61350760	by1000genomes	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:145293269G>A	uc001end.3	+						NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_5'UTR|NOTCH2NL_uc010oyh.1_Intron|NBPF10_uc001emq.1_5'UTR	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406												0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		TTTCACAACAGTAAGTTAAGA	0.423000													7	96					0	0	0	0
LOC645166	645166	broad.mit.edu	37	1	148932866	148932866	+	RNA	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:148932866G>A	uc010pbc.1	+	2		c.181G>A			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						CCAAGAGTTGGTGGGAGACGG	0.627000													12	223					0	0	0	0
LINGO4	339398	broad.mit.edu	37	1	151774779	151774779	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:151774779C>T	uc001ezf.1	-	2	592	c.402G>A	c.(400-402)CTG>CTA	p.L134L		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	134	Extracellular (Potential).|LRR 4.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			CCAGCAGGGTCAGAGCAGAGA	0.597000													92	76					0	0	0	0
CD1A	909	broad.mit.edu	37	1	158226702	158226702	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:158226702A>T	uc001frt.2	+	4	1264	c.731A>T	c.(730-732)CAG>CTG	p.Q244L		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	244	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	GAGCAGGAGCAGCAGGGCACT	0.642000													39	80					0	0	0	0
KCNJ9	3765	broad.mit.edu	37	1	160054148	160054148	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:160054148G>C	uc001fuy.1	+	2	570	c.328G>C	c.(328-330)GCC>CCC	p.A110P		NM_004983	NP_004974	Q92806	IRK9_HUMAN	potassium inwardly-rectifying channel subfamily	110					synaptic transmission	integral to membrane|plasma membrane	G-protein activated inward rectifier potassium channel activity|protein binding			ovary(1)|skin(1)	2	all_cancers(52;5.86e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CTTCGTGGCCGCCTTCCTCTT	0.677000													24	39					0	0	0	0
RYR2	6262	broad.mit.edu	37	1	237949308	237949308	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:237949308G>C	uc001hyl.1	+	91	13420	c.13300G>C	c.(13300-13302)GAA>CAA	p.E4434Q	RYR2_uc010pya.1_Missense_Mutation_p.E849Q	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4434	Potential.|Glu-rich (acidic).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			agaaaaagaagaaACCAAATC	0.318000													3	3					0	0	0	0
OR2T12	127064	broad.mit.edu	37	1	248458473	248458473	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:248458473C>T	uc010pzj.1	-	1	408	c.408G>A	c.(406-408)TGG>TGA	p.W136*		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			GGCACAGCTGCCAGCTCATGA	0.607000													29	44					0	0	0	0
FAM178A	55719	broad.mit.edu	37	10	102684308	102684308	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr10:102684308A>G	uc001krt.3	+	5	2092	c.1550A>G	c.(1549-1551)GAA>GGA	p.E517G	FAM178A_uc001krr.1_Missense_Mutation_p.E517G|FAM178A_uc001krs.2_Missense_Mutation_p.E517G|FAM178A_uc001kru.1_Missense_Mutation_p.E452G	NM_018121	NP_060591	Q8IX21	F178A_HUMAN	hypothetical protein LOC55719 isoform 1	517											0						CATTCTACAGAATCCACCAAA	0.393000													58	88					0	0	0	0
SORCS1	114815	broad.mit.edu	37	10	108371726	108371726	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr10:108371726C>T	uc001kym.2	-	22	2984	c.2976G>A	c.(2974-2976)CCG>CCA	p.P992P	SORCS1_uc001kyl.2_Silent_p.P992P|SORCS1_uc009xxs.2_Silent_p.P992P|SORCS1_uc001kyn.1_Silent_p.P992P|SORCS1_uc001kyo.2_Silent_p.P992P	NM_052918	NP_443150	Q8WY21	SORC1_HUMAN	SORCS receptor 1 isoform a	992	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity|protein binding			breast(1)|central_nervous_system(1)	2		Breast(234;0.0256)|Colorectal(252;0.09)|Lung NSC(174;0.168)		Epithelial(162;1.66e-05)|all cancers(201;0.000689)		CAGGGATGTCCGGGTTGTAGT	0.483000													27	52					0	0	0	0
RPL13AP6	644511	broad.mit.edu	37	10	112696885	112696885	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr10:112696885A>T	uc010qrh.1	-	1	129	c.107T>A	c.(106-108)GTA>GAA	p.V36E	SHOC2_uc001kzl.3_Intron|SHOC2_uc009xxx.2_Intron|SHOC2_uc010qrg.1_Intron	NR_026715				SubName: Full=cDNA FLJ51256, highly similar to 60S ribosomal protein L13a;												0						TTTGCAGCGTACGACCACCAC	0.562000													12	30					0	0	0	0
FAM160B1	57700	broad.mit.edu	37	10	116590627	116590627	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr10:116590627C>G	uc001lcb.2	+	2	397	c.62C>G	c.(61-63)CCT>CGT	p.P21R	FAM160B1_uc001lcc.2_Missense_Mutation_p.P21R	NM_020940	NP_065991	Q5W0V3	F16B1_HUMAN	hypothetical protein LOC57700 isoform a	21										lung(1)	1						CCTTCTCTTCCTTTACAAGAA	0.318000													27	52					0	0	0	0
ZNF214	7761	broad.mit.edu	37	11	7021319	7021319	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr11:7021319C>T	uc001mfa.2	-	3	1898	c.1595G>A	c.(1594-1596)GGA>GAA	p.G532E	ZNF214_uc010ray.1_Missense_Mutation_p.G532E|ZNF214_uc009yfh.1_Missense_Mutation_p.G532E	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	532	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		AAAACCCTTTCCACAATCATG	0.413000													34	36					0	0	0	0
RRAS2	22800	broad.mit.edu	37	11	14316390	14316390	+	Missense_Mutation	SNP	T	A	A	rs113954997		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr11:14316390T>A	uc001mlf.3	-	3	528	c.215A>T	c.(214-216)CAA>CTA	p.Q72L	RRAS2_uc009ygq.2_5'UTR|RRAS2_uc010rco.1_Missense_Mutation_p.Q78L	NM_012250	NP_036382	P62070	RRAS2_HUMAN	related RAS viral (r-ras) oncogene homolog 2	72	GTP (By similarity).		Q -> L (in an ovarian cancer sample; somatic mutation).			endoplasmic reticulum|plasma membrane	GTP binding|GTPase activity|protein binding			breast(1)	1				Epithelial(150;0.203)		AAACTCTTCTTGTCCTGCTGT	0.393000													59	47					0	0	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68696742	68696742	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr11:68696742C>T	uc001ook.1	+	8	1254	c.1152C>T	c.(1150-1152)AGC>AGT	p.S384S	IGHMBP2_uc001ooj.1_RNA|IGHMBP2_uc001ool.1_5'Flank	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	384	Leu-rich.				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TCGAGGCGAGCTGCTGGATCC	0.622000													64	112					0	0	0	0
DLG2	1740	broad.mit.edu	37	11	84996292	84996292	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr11:84996292C>T	uc001pak.2	-	4	470	c.158G>A	c.(157-159)TGC>TAC	p.C53Y		NM_001142699	NP_001136171	Q15700	DLG2_HUMAN	chapsyn-110 isoform 1	Error:Variant_position_missing_in_Q15700_after_alignment						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCTGTCATGGCACGGAGCAAG	0.383000													50	111					0	0	0	0
TMEM133	83935	broad.mit.edu	37	11	100863058	100863058	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr11:100863058G>T	uc001pgf.2	+	1	248	c.19G>T	c.(19-21)GTA>TTA	p.V7L		NM_032021	NP_114410	Q9H2Q1	TM133_HUMAN	transmembrane protein 133	7						integral to membrane					0		Acute lymphoblastic leukemia(157;0.000869)|all_hematologic(158;0.014)		BRCA - Breast invasive adenocarcinoma(274;0.0675)		ACATCACTGCGTAGGACCCGG	0.428000													24	46					7.87624e-14	8.8889e-14	1	0
MCAM	4162	broad.mit.edu	37	11	119181165	119181165	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr11:119181165G>A	uc001pwf.2	-	15	1834	c.1805C>T	c.(1804-1806)CCG>CTG	p.P602L	MCAM_uc001pwg.1_Intron	NM_006500	NP_006491	P43121	MUC18_HUMAN	melanoma cell adhesion molecule	602	Cytoplasmic (Potential).				anatomical structure morphogenesis|cell adhesion	integral to membrane|plasma membrane				ovary(2)|breast(1)|central_nervous_system(1)	4		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.78e-05)		CTTACGAGACGGGGGTAGCGT	0.587000													64	111					0	0	0	0
ROBO4	54538	broad.mit.edu	37	11	124756993	124756993	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr11:124756993G>T	uc001qbg.2	-	15	2455	c.2315C>A	c.(2314-2316)CCA>CAA	p.P772Q	ROBO4_uc010sas.1_Missense_Mutation_p.P627Q|ROBO4_uc001qbh.2_Missense_Mutation_p.P662Q|ROBO4_uc001qbi.2_Missense_Mutation_p.P330Q	NM_019055	NP_061928	Q8WZ75	ROBO4_HUMAN	roundabout homolog 4, magic roundabout	772	Pro/Ser-rich.				angiogenesis|cell differentiation	integral to membrane	receptor activity			ovary(1)|skin(1)	2	all_hematologic(175;0.215)	Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|Breast(109;0.171)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.5e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0301)		ACTGGAAGCTGGGCTGGGGCC	0.652000													14	37					1.49906e-05	1.60035e-05	1	0
RECQL	5965	broad.mit.edu	37	12	21630754	21630754	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:21630754G>A	uc001rex.2	-	8	1198	c.850C>T	c.(850-852)CCA>TCA	p.P284S	RECQL_uc001rey.2_Missense_Mutation_p.P284S	NM_032941	NP_116559	P46063	RECQ1_HUMAN	RecQ protein-like	284					DNA recombination|DNA repair|DNA replication	nucleus	ATP binding|ATP-dependent 3'-5' DNA helicase activity|DNA strand annealing activity|protein binding			ovary(1)|lung(1)	2						TATAGATTTGGCCTATTAAAA	0.328000								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					18	52					0	0	0	0
KCNJ8	3764	broad.mit.edu	37	12	21918866	21918866	+	Nonsense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:21918866G>A	uc001rff.2	-	3	1404	c.1066C>T	c.(1066-1068)CGA>TGA	p.R356*		NM_004982	NP_004973	Q15842	IRK8_HUMAN	potassium inwardly-rectifying channel J8	356	Cytoplasmic (By similarity).					voltage-gated potassium channel complex					0					Levosimendan(DB00922)	TCCAGCTCTCGGGCACTGCAC	0.463000													61	155					0	0	0	0
DDX11	1663	broad.mit.edu	37	12	31242861	31242861	+	Silent	SNP	A	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:31242861A>C	uc001rjt.1	+	9	1173	c.922A>C	c.(922-924)AGG>CGG	p.R308R	DDX11_uc010sjw.1_3'UTR|DDX11_uc010sjx.1_RNA|DDX11_uc001rjr.1_Silent_p.R308R|DDX11_uc001rjs.1_Silent_p.R308R|DDX11_uc001rju.1_5'UTR|DDX11_uc001rjv.1_Silent_p.R308R|DDX11_uc001rjw.1_Silent_p.R282R|DDX11_uc001rjx.1_5'UTR|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	308	Helicase ATP-binding.				G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					AAAGAGGAGGAGGCAGGAGAA	0.587000										Multiple Myeloma(12;0.14)			3	23					0	0	0	0
FAM113B	91523	broad.mit.edu	37	12	47629946	47629946	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:47629946T>C	uc001rpn.2	+	4	1831	c.1100T>C	c.(1099-1101)TTC>TCC	p.F367S	FAM113B_uc001rpq.2_Missense_Mutation_p.F367S	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	367	Pro-rich.						hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CATGCAGGTTTCTTCGTCGAA	0.522000													88	182					0	0	0	0
MLL2	8085	broad.mit.edu	37	12	49420628	49420628	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:49420628C>T	uc001rta.3	-	48	15121	c.15121G>A	c.(15121-15123)GGG>AGG	p.G5041R		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5041					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						TCAGTGGCCCCGTCACCCTCC	0.607000			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			24	114					0	0	0	0
LRRC10	376132	broad.mit.edu	37	12	70004207	70004207	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:70004207C>T	uc001svc.2	-	1	736	c.412G>A	c.(412-414)GAT>AAT	p.D138N		NM_201550	NP_963844	Q5BKY1	LRC10_HUMAN	leucine rich repeat containing 10	138	LRR 4.					nucleus					0	all_cancers(2;2.83e-105)|Breast(13;9.83e-07)|Esophageal squamous(21;0.187)		Epithelial(6;1.98e-18)|GBM - Glioblastoma multiforme(2;7.43e-12)|Lung(24;0.000185)|OV - Ovarian serous cystadenocarcinoma(12;0.00126)|STAD - Stomach adenocarcinoma(21;0.00501)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			CAGACCACATCCGGCAGCTGG	0.632000													22	107					0	0	0	0
NAV3	89795	broad.mit.edu	37	12	78225481	78225481	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:78225481C>A	uc001syp.2	+	1	413	c.240C>A	c.(238-240)AGC>AGA	p.S80R	NAV3_uc001syo.2_Missense_Mutation_p.S80R	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	80	CH.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AAGAAGACAGCAAGGTTAGTT	0.413000										HNSCC(70;0.22)			38	13					8.16277e-20	9.55347e-20	1	0
WSCD2	9671	broad.mit.edu	37	12	108634152	108634152	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:108634152C>T	uc001tms.2	+	8	1920	c.1176C>T	c.(1174-1176)AGC>AGT	p.S392S	WSCD2_uc001tmt.2_Silent_p.S392S|WSCD2_uc001tmu.2_Silent_p.S140S	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	392						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						ACTGGCGCAGCGGACGGACCA	0.607000													118	58					0	0	0	0
SELPLG	6404	broad.mit.edu	37	12	109016914	109016914	+	Silent	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:109016914C>A	uc001tni.2	-	2	1330	c.1170G>T	c.(1168-1170)CCG>CCT	p.P390P	SELPLG_uc001tnh.2_Silent_p.P380P|SELPLG_uc010sxe.1_Silent_p.P406P	NM_003006	NP_002997	Q14242	SELPL_HUMAN	selectin P ligand	390	Cytoplasmic (Potential).				blood coagulation|cellular response to interleukin-6	integral to plasma membrane|membrane fraction	bacterial cell surface binding|receptor binding				0						GCGTCAGGCCCGGGCTCTTGG	0.642000													19	5					1.15919e-05	1.24593e-05	1	0
BRCA2	675	broad.mit.edu	37	13	32972595	32972595	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr13:32972595A>T	uc001uub.1	+	27	10172	c.9945A>T	c.(9943-9945)AAA>AAT	p.K3315N		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	3315					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		TAAAGAAAAAAGAACTGAATT	0.368000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			33	54					0	0	0	0
SUGT1	10910	broad.mit.edu	37	13	53233376	53233376	+	Missense_Mutation	SNP	A	G	G	rs12875900		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr13:53233376A>G	uc001vhc.2	+	5	545	c.320A>G	c.(319-321)AAA>AGA	p.K107R	SUGT1_uc001vha.2_RNA|SUGT1_uc001vhb.2_Missense_Mutation_p.K107R|SUGT1_uc010thb.1_Missense_Mutation_p.K51R|SUGT1_uc001vhd.2_5'UTR	NM_001130912	NP_001124384	Q9Y2Z0	SUGT1_HUMAN	suppressor of G2 allele of SKP1 isoform a	107	TPR 3.				mitosis	kinetochore|ubiquitin ligase complex	binding				0		Lung NSC(96;0.00212)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;3.25e-08)		GAAGGACAAAAATTAGATAGT	0.249000													12	12					0	0	0	0
RASA3	22821	broad.mit.edu	37	13	114758033	114758033	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr13:114758033C>G	uc001vui.2	-	22	2304	c.2173G>C	c.(2173-2175)GAT>CAT	p.D725H	RASA3_uc010tkk.1_Missense_Mutation_p.D693H|RASA3_uc001vuj.2_Missense_Mutation_p.D342H	NM_007368	NP_031394	Q14644	RASA3_HUMAN	RAS p21 protein activator 3	725					intracellular signal transduction|negative regulation of Ras protein signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	calcium-release channel activity|metal ion binding|Ras GTPase activator activity			lung(3)|skin(1)	4	Lung NSC(43;0.00814)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.016)|all_epithelial(44;0.00577)|all_lung(25;0.0173)|Lung NSC(25;0.0634)|Breast(118;0.188)	BRCA - Breast invasive adenocarcinoma(86;0.128)			CGGTCCCCATCAATGTCCAGC	0.483000													16	31					0	0	0	0
KTN1	3895	broad.mit.edu	37	14	56142559	56142559	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr14:56142559G>C	uc001xcb.2	+	42	4080	c.3778G>C	c.(3778-3780)GCA>CCA	p.A1260P	KTN1_uc001xce.2_Missense_Mutation_p.A1203P|KTN1_uc001xcc.2_Missense_Mutation_p.A1260P|KTN1_uc001xcd.2_Missense_Mutation_p.A1209P|KTN1_uc010trb.1_Missense_Mutation_p.A1232P|KTN1_uc001xcf.1_Missense_Mutation_p.A1209P|KTN1_uc010aoq.2_Missense_Mutation_p.A498P|KTN1_uc010trc.1_Missense_Mutation_p.A237P|KTN1_uc001xcg.2_Missense_Mutation_p.A193P	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	1260	Lumenal (Potential).|Potential.				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						ACAGTTGAAGGCACAGTTAAA	0.368000			T	RET	papillary thryoid								15	46					0	0	0	0
SLC8A3	6547	broad.mit.edu	37	14	70633852	70633852	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr14:70633852A>T	uc001xly.2	-	2	2042	c.1288T>A	c.(1288-1290)TAT>AAT	p.Y430N	SLC8A3_uc001xlw.2_Missense_Mutation_p.Y430N|SLC8A3_uc001xlx.2_Missense_Mutation_p.Y430N|SLC8A3_uc001xlz.2_Missense_Mutation_p.Y430N|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	430	Calx-beta 1.|Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		TAGTCCACATACATGGTCTTT	0.522000													73	112					0	0	0	0
C14orf102	55051	broad.mit.edu	37	14	90767686	90767686	+	Missense_Mutation	SNP	C	T	T	rs150270537		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr14:90767686C>T	uc001xyi.1	-	7	1473	c.1442G>A	c.(1441-1443)CGG>CAG	p.R481Q	C14orf102_uc010atp.1_5'UTR|C14orf102_uc001xyj.1_Missense_Mutation_p.R250Q	NM_017970	NP_060440	Q9H7Z3	CN102_HUMAN	hypothetical protein LOC55051 isoform 1	481							protein binding			ovary(2)|lung(1)	3		all_cancers(154;0.118)		COAD - Colon adenocarcinoma(157;0.218)		GCCAGCCTGCCGCAGAAAGTG	0.517000													20	32					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106091490	106091490	+	RNA	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr14:106091490C>T	uc010tyt.1	-	3647		c.62018G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						CTCAGGGGTCCGGGAGATCAT	0.592000													44	237					0	0	0	0
ADAM6	8755	broad.mit.edu	37	14	106092259	106092259	+	RNA	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr14:106092259C>T	uc010tyt.1	-	3645		c.61759G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						GTGTGCACGCCGCTGGTCAGG	0.652000													13	64					0	0	0	0
MKRN3	7681	broad.mit.edu	37	15	23811475	23811475	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr15:23811475C>T	uc001ywh.3	+	1	1022	c.546C>T	c.(544-546)GCC>GCT	p.A182A	MKRN3_uc001ywi.2_Intron|MKRN3_uc010ayi.1_Silent_p.A182A	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	182						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		TCTTTGAAGCCGAGAGAGACA	0.617000													22	32					0	0	0	0
CHST14	113189	broad.mit.edu	37	15	40763950	40763950	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr15:40763950C>A	uc001zlw.2	+	1	738	c.538C>A	c.(538-540)CTC>ATC	p.L180I		NM_130468	NP_569735	Q8NCH0	CHSTE_HUMAN	dermatan 4 sulfotransferase 1	180	Lumenal (Potential).				carbohydrate biosynthetic process|dermatan sulfate proteoglycan metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity|phosphate binding				0		all_cancers(109;2.34e-14)|all_epithelial(112;1.08e-11)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0781)		GGACGTCCGCCTCAAGATGGA	0.602000													39	51					2.35958e-20	2.80312e-20	1	0
LIPC	3990	broad.mit.edu	37	15	58834054	58834054	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr15:58834054T>C	uc010bga.1	+	5	952	c.344T>C	c.(343-345)GTG>GCG	p.V115A	LIPC_uc010bfz.1_Missense_Mutation_p.V115A|LIPC_uc002afa.1_Missense_Mutation_p.V115A|LIPC_uc010bgb.1_Missense_Mutation_p.V13A|LIPC_uc010ugy.1_Intron	NM_000236	NP_000227	P11150	LIPC_HUMAN	lipase C precursor	115					cholesterol homeostasis|chylomicron remnant clearance|fatty acid biosynthetic process|high-density lipoprotein particle remodeling|intermediate-density lipoprotein particle remodeling|low-density lipoprotein particle remodeling|phosphatidylcholine catabolic process|triglyceride catabolic process|triglyceride homeostasis|very-low-density lipoprotein particle remodeling	high-density lipoprotein particle	apolipoprotein binding|heparin binding|low-density lipoprotein particle binding|phospholipase activity|triglyceride lipase activity			ovary(1)	1		Colorectal(260;0.215)		GBM - Glioblastoma multiforme(80;0.00213)|all cancers(107;0.00548)		GCCCAGCCAGTGAACGTGGGG	0.652000													15	24					0	0	0	0
Unknown	0	broad.mit.edu	37	15	102304795	102304795	+	5'Flank	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr15:102304795G>A	uc002cbx.1	-						uc002ccc.1_5'Flank|uc002ccf.3_RNA|uc002ccg.3_5'Flank|uc010uth.1_5'Flank|uc002cci.2_5'Flank|uc002ccj.2_5'Flank|uc002cck.2_5'Flank|uc002ccl.1_5'Flank|uc002ccm.1_5'Flank					DQ582460																		GTGGGAAGAAGAAGACACTCC	0.592000													3	23					0	0	0	0
CLEC16A	23274	broad.mit.edu	37	16	11097000	11097000	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr16:11097000C>T	uc002dao.2	+	11	1371	c.1141C>T	c.(1141-1143)CAC>TAC	p.H381Y	CLEC16A_uc002dan.3_Missense_Mutation_p.H379Y	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	381										ovary(1)|central_nervous_system(1)	2						GATGAACAAGCACAAGGGCAA	0.537000													13	34					0	0	0	0
CDH8	1006	broad.mit.edu	37	16	61859022	61859022	+	Silent	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr16:61859022A>T	uc002eog.1	-	5	981	c.729T>A	c.(727-729)GTT>GTA	p.V243V	CDH8_uc002eoh.2_Silent_p.V12V	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	243	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TGGCTTGGATAACAACCAGGT	0.458000													16	72					0	0	0	0
CDH3	1001	broad.mit.edu	37	16	68729736	68729736	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr16:68729736C>T	uc002ewf.2	+	15	3322	c.2190C>T	c.(2188-2190)CTC>CTT	p.L730L	CDH3_uc010vli.1_Silent_p.L675L	NM_001793	NP_001784	P22223	CADH3_HUMAN	cadherin 3, type 1 preproprotein	730	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|response to stimulus|visual perception	integral to membrane	calcium ion binding	p.?(1)		ovary(3)|breast(1)|skin(1)	5		Ovarian(137;0.0564)		OV - Ovarian serous cystadenocarcinoma(108;0.000782)|Epithelial(162;0.0054)|all cancers(182;0.0384)		AGGTGGTTCTCCGCAATGACG	0.582000													73	62					0	0	0	0
SF3B3	23450	broad.mit.edu	37	16	70590203	70590203	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr16:70590203A>T	uc002ezf.2	+	14	2043	c.1832A>T	c.(1831-1833)GAC>GTC	p.D611V		NM_012426	NP_036558	Q15393	SF3B3_HUMAN	splicing factor 3b, subunit 3	611					protein complex assembly	catalytic step 2 spliceosome|nucleoplasm|small nuclear ribonucleoprotein complex|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(1)	1		Ovarian(137;0.0694)				GGGCTTGTGGACAACACTGTC	0.542000													84	179					0	0	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76555134	76555134	+	Silent	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr16:76555134T>C	uc002feu.1	+	18	2848	c.2463T>C	c.(2461-2463)TTT>TTC	p.F821F	CNTNAP4_uc002fev.1_Silent_p.F685F|CNTNAP4_uc010chb.1_Silent_p.F748F|CNTNAP4_uc002fex.1_Silent_p.F824F	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	821	Extracellular (Potential).|Laminin G-like 3.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						CTTTCTTTTTTAAGACAACAG	0.408000													62	202					0	0	0	0
FBXO31	79791	broad.mit.edu	37	16	87376494	87376494	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr16:87376494C>A	uc002fjw.2	-	5	765	c.721G>T	c.(721-723)GGG>TGG	p.G241W	FBXO31_uc010vot.1_Missense_Mutation_p.G69W|FBXO31_uc002fjv.2_Missense_Mutation_p.G133W	NM_024735	NP_079011	Q5XUX0	FBX31_HUMAN	F-box protein 31	241					cell cycle|cyclin catabolic process|mitotic cell cycle G1/S transition DNA damage checkpoint|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	SCF ubiquitin ligase complex	cyclin binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0272)		TCCTGCCTCCCGCCGGACATC	0.557000													9	8					0.00621372	0.00650177	1	0
ZC3H18	124245	broad.mit.edu	37	16	88689626	88689626	+	Splice_Site	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr16:88689626G>A	uc002fky.2	+	10	1868	c.1668_splice	c.e10-1	p.R556_splice	ZC3H18_uc010voz.1_Splice_Site_p.R580_splice|ZC3H18_uc010chw.2_Splice_Site	NM_144604	NP_653205	Q86VM9	ZCH18_HUMAN	zinc finger CCCH-type containing 18							nucleus	nucleic acid binding|zinc ion binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0542)		GCCCGCCCCAGGTCGTCTTCG	0.512000													29	25					0	0	0	0
TP53	7157	broad.mit.edu	37	17	7578553	7578553	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr17:7578553T>C	uc002gim.2	-	5	571	c.377A>G	c.(376-378)TAC>TGC	p.Y126C	TP53_uc002gig.1_Missense_Mutation_p.Y126C|TP53_uc002gih.2_Missense_Mutation_p.Y126C|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_5'UTR|TP53_uc010cng.1_5'UTR|TP53_uc002gii.1_5'UTR|TP53_uc010cnh.1_Missense_Mutation_p.Y126C|TP53_uc010cni.1_Missense_Mutation_p.Y126C|TP53_uc002gij.2_Missense_Mutation_p.Y126C|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.Y33C|TP53_uc002gio.2_5'UTR|TP53_uc010vug.1_Missense_Mutation_p.Y87C	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	126	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		Y -> H (in sporadic cancers; somatic mutation).|Y -> N (in sporadic cancers; somatic mutation).|Y -> F (in a sporadic cancer; somatic mutation).|Y -> C (in a familial cancer not matching LFS; germline mutation and in sporadic cancers; somatic mutation).|Y -> D (in sporadic cancers; somatic mutation).|Y -> S (in sporadic cancers; somatic mutation).|Y -> G (in a sporadic cancer; somatic mutation; requires 2 nucleotide substitutions).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.Y126*(9)|p.0?(7)|p.Y126N(6)|p.Y126_K132delYSPALNK(6)|p.Y126C(4)|p.Y126D(3)|p.Y126_N131delYSPALN(3)|p.Y126S(2)|p.V73fs*9(1)|p.?(1)|p.Y126Y(1)|p.Y126fs*11(1)|p.P13fs*18(1)|p.T125_Y126insX(1)|p.Y126fs*24(1)|p.Y126fs*18(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GGCAGGGGAGTACTGTAGGAA	0.557000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			44	10					0	0	0	0
MYH4	4622	broad.mit.edu	37	17	10369589	10369589	+	Splice_Site	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr17:10369589C>A	uc002gmn.2	-	4	459	c.348_splice	c.e4+1	p.Y116_splice	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle						muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						AGGGTGCTCACGTAGATCATC	0.433000													43	85					1.56793e-16	1.78225e-16	1	0
Unknown	0	broad.mit.edu	37	17	25749187	25749187	+	RNA	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr17:25749187G>A	uc002gzg.2	+	6		c.1088G>A			uc002gzh.1_5'Flank					Homo sapiens similar to ubiquitin specific protease 6, mRNA (cDNA clone IMAGE:5168266), with apparent retained intron.																		GAGTGTATAAGGGCATTCCCA	0.498000													13	20					0	0	0	0
ITGB3	3690	broad.mit.edu	37	17	45368453	45368453	+	Missense_Mutation	SNP	C	T	T	rs147758772		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr17:45368453C>T	uc002ilj.2	+	9	1279	c.1259C>T	c.(1258-1260)ACG>ATG	p.T420M	ITGB3_uc002ili.1_Missense_Mutation_p.T420M|ITGB3_uc010wkr.1_RNA	NM_000212	NP_000203	P05106	ITB3_HUMAN	integrin beta chain, beta 3 precursor	420	Extracellular (Potential).				activation of protein kinase activity|angiogenesis involved in wound healing|axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|platelet activation|platelet degranulation|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|regulation of bone resorption|smooth muscle cell migration|tube development	alphav-beta3 integrin-vitronectin complex|integrin complex|platelet alpha granule membrane	cell adhesion molecule binding|identical protein binding|platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			central_nervous_system(5)|large_intestine(1)	6					Abciximab(DB00054)|Tirofiban(DB00775)	ATTGGAGACACGGTGAGGTGG	0.542000													30	84					0	0	0	0
KCNJ2	3759	broad.mit.edu	37	17	68171810	68171810	+	Silent	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr17:68171810G>A	uc010dfg.2	+	2	1031	c.630G>A	c.(628-630)TTG>TTA	p.L210L	KCNJ2_uc002jir.2_Silent_p.L210L	NM_000891	NP_000882	P63252	IRK2_HUMAN	potassium inwardly-rectifying channel J2	210	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity|protein binding				0	Breast(10;1.64e-08)					AGCTGTGTTTGATGTGGCGAG	0.498000													34	56					0	0	0	0
CDR2L	30850	broad.mit.edu	37	17	72998278	72998278	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr17:72998278C>T	uc002jml.3	+	4	873	c.461C>T	c.(460-462)ACC>ATC	p.T154I		NM_014603	NP_055418	Q86X02	CDR2L_HUMAN	cerebellar degeneration-related protein 2-like	154											0	all_lung(278;0.226)					CGCAGGCGTACCATCCACACC	0.647000													10	14					0	0	0	0
EVPL	2125	broad.mit.edu	37	17	74019475	74019475	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr17:74019475C>T	uc002jqi.2	-	4	606	c.378G>A	c.(376-378)GTG>GTA	p.V126V	EVPL_uc010wss.1_Silent_p.V126V|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	126	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						ACTCCTGGGTCACCCGCTCGT	0.672000													28	72					0	0	0	0
MAST1	22983	broad.mit.edu	37	19	12975624	12975624	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr19:12975624C>T	uc002mvm.2	+	13	1496	c.1368C>T	c.(1366-1368)GGC>GGT	p.G456G		NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	456	Protein kinase.				cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						GGCCTGCAGGCGGCGACTGTG	0.507000													19	36					0	0	0	0
SLC5A5	6528	broad.mit.edu	37	19	18001748	18001748	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr19:18001748C>T	uc002nhr.3	+	14	2052	c.1705C>T	c.(1705-1707)CGG>TGG	p.R569W		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	569	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GGACCTCGCACGGCAGACAGC	0.602000													75	130					0	0	0	0
ZNF285	26974	broad.mit.edu	37	19	44890792	44890792	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr19:44890792G>C	uc002ozd.3	-	4	1702	c.1615C>G	c.(1615-1617)CCC>GCC	p.P539A	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.P546A	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	539					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						CACTTATAGGGCCTCTCTCTT	0.438000													39	19					0	0	0	0
FAM83E	54854	broad.mit.edu	37	19	49116610	49116610	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr19:49116610G>A	uc002pjn.2	-	1	85	c.20C>T	c.(19-21)GCG>GTG	p.A7V		NM_017708	NP_060178	Q2M2I3	FA83E_HUMAN	hypothetical protein LOC54854	7										ovary(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000102)|all cancers(93;0.000117)|GBM - Glioblastoma multiforme(486;0.00627)|Epithelial(262;0.0158)		TTCCAGCGCCGCCAGCTGGGA	0.682000													3	2					0	0	0	0
ZNF83	55769	broad.mit.edu	37	19	53117347	53117347	+	Silent	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr19:53117347G>A	uc002pzu.3	-	2	1715	c.471C>T	c.(469-471)GTC>GTT	p.V157V	ZNF83_uc002pzv.3_Silent_p.V157V|ZNF83_uc010eps.2_Silent_p.V157V|ZNF83_uc010ept.2_Silent_p.V157V|ZNF83_uc010epu.2_Silent_p.V157V|ZNF83_uc010epv.2_Silent_p.V157V|ZNF83_uc010epw.2_Silent_p.V157V|ZNF83_uc010epx.2_Silent_p.V157V|ZNF83_uc010epy.2_Silent_p.V157V|ZNF83_uc010epz.2_Silent_p.V157V|ZNF83_uc010eqb.1_Silent_p.V157V	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	157	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TATTATGGAAGACCTTGCCAC	0.353000													16	25					0	0	0	0
LILRA4	23547	broad.mit.edu	37	19	54850163	54850163	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr19:54850163A>G	uc002qfj.2	-	2	101	c.44T>C	c.(43-45)CTG>CCG	p.L15P	LILRA4_uc002qfi.2_5'UTR	NM_012276	NP_036408	P59901	LIRA4_HUMAN	leukocyte immunoglobulin-like receptor subfamily	15						integral to membrane	receptor activity			upper_aerodigestive_tract(1)|central_nervous_system(1)	2	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0565)		CCTGGGGCCCAGGCTCAGCCC	0.622000											OREG0003656	type=REGULATORY REGION|Gene=LILRA4|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	25	22					0	0	0	0
MYT1L	23040	broad.mit.edu	37	2	1843127	1843127	+	Silent	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:1843127C>A	uc002qxe.2	-	21	3701	c.2874G>T	c.(2872-2874)GGG>GGT	p.G958G	MYT1L_uc002qxd.2_Silent_p.G956G|MYT1L_uc010ewk.2_5'UTR	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	958	C2HC-type 5.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		GGCCGTCGCACCCGGGGACCG	0.617000													33	59					2.75727e-19	3.17992e-19	1	0
AGBL5	60509	broad.mit.edu	37	2	27276859	27276859	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:27276859C>A	uc002rie.2	+	4	700	c.483C>A	c.(481-483)TAC>TAA	p.Y161*	AGBL5_uc002ric.2_Nonsense_Mutation_p.Y161*|AGBL5_uc002rid.2_Nonsense_Mutation_p.Y161*|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	161					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTTCTCCTACAGTGACTGCC	0.552000													75	129					4.2702e-19	4.88907e-19	1	0
APLF	200558	broad.mit.edu	37	2	68772422	68772422	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:68772422C>G	uc002sep.2	+	8	1437	c.1264C>G	c.(1264-1266)CCC>GCC	p.P422A	APLF_uc002seq.1_RNA|APLF_uc010fdf.2_Missense_Mutation_p.P398A|APLF_uc002ser.1_Missense_Mutation_p.P153A	NM_173545	NP_775816	Q8IW19	APLF_HUMAN	aprataxin and PNKP like factor	422	PBZ-type 2.				double-strand break repair|single strand break repair	cytosol|nucleus	3'-5' exonuclease activity|DNA-(apurinic or apyrimidinic site) lyase activity|endodeoxyribonuclease activity|metal ion binding|nucleotide binding|protein binding			ovary(2)	2						GCCTGAATGTCCCTATGGACC	0.423000													29	67					0	0	0	0
FER1L5	90342	broad.mit.edu	37	2	97361486	97361486	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:97361486C>T	uc010fia.2	+	35	3983	c.3983C>T	c.(3982-3984)CCG>CTG	p.P1328L	FER1L5_uc002sws.3_Missense_Mutation_p.P46L|FER1L5_uc010fib.1_RNA|FER1L5_uc002swt.3_Missense_Mutation_p.P46L|FER1L5_uc010yus.1_Missense_Mutation_p.P45L	NM_001113382	NP_001106853	A0AVI2	FR1L5_HUMAN	fer-1-like 5 isoform 2	1328						integral to membrane				ovary(1)	1						CAGCTCATGCCGACGGAGGAG	0.642000													10	18					0	0	0	0
SAP130	79595	broad.mit.edu	37	2	128775458	128775458	+	Silent	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:128775458G>A	uc002tpp.2	-	3	354	c.222C>T	c.(220-222)GTC>GTT	p.V74V	SAP130_uc002tpo.2_5'Flank|SAP130_uc010fmd.2_Silent_p.V74V|SAP130_uc002tpq.1_Silent_p.V48V	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	74					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		CCCTGGCACTGACTTCAGAAT	0.498000													29	62					0	0	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555887	155555887	+	Silent	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:155555887G>T	uc002tyv.1	+	1	795	c.600G>T	c.(598-600)GCG>GCT	p.A200A	KCNJ3_uc010zce.1_Silent_p.A200A	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	200	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	GCGAGCACGCGGTGATCTCCA	0.597000													4	33					0.00909568	0.00939292	1	0
TTN	7273	broad.mit.edu	37	2	179484368	179484368	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:179484368C>G	uc010zfg.1	-	199	39196	c.38972G>C	c.(38971-38973)AGA>ACA	p.R12991T	TTN_uc010zfh.1_Missense_Mutation_p.R6686T|TTN_uc010zfi.1_Missense_Mutation_p.R6619T|TTN_uc010zfj.1_Missense_Mutation_p.R6494T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13918							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGCTTAGCTCTGGCTTCTTT	0.373000													35	57					0	0	0	0
SLC39A10	57181	broad.mit.edu	37	2	196592977	196592977	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:196592977C>T	uc002utg.3	+	9	2455	c.2241C>T	c.(2239-2241)CTC>CTT	p.L747L	SLC39A10_uc002uth.3_Silent_p.L747L|SLC39A10_uc010zgp.1_Silent_p.L297L	NM_001127257	NP_001120729	Q9ULF5	S39AA_HUMAN	solute carrier family 39 (zinc transporter),	747	Helical; (Potential).				zinc ion transport	integral to membrane	metal ion transmembrane transporter activity			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.221)			TAGGCATGCTCATAGGCACAG	0.443000													8	192					0	0	0	0
ARPC2	10109	broad.mit.edu	37	2	219110167	219110167	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:219110167A>T	uc002vhd.2	+	8	686	c.574A>T	c.(574-576)AGC>TGC	p.S192C	ARPC2_uc002vhe.2_Missense_Mutation_p.S192C|ARPC2_uc002vhf.2_Missense_Mutation_p.S78C	NM_152862	NP_690601	O15144	ARPC2_HUMAN	actin related protein 2/3 complex subunit 2	192					cellular component movement	Arp2/3 protein complex|cell projection|Golgi apparatus	actin binding|structural constituent of cytoskeleton			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;1.21e-06)|all cancers(144;0.000212)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0103)		ACGCAGAGCCAGCCACACAGC	0.512000													6	152					0	0	0	0
RNF24	11237	broad.mit.edu	37	20	3914726	3914726	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr20:3914726G>A	uc002wkh.2	-	6	701	c.431C>T	c.(430-432)GCA>GTA	p.A144V	RNF24_uc002wki.2_Missense_Mutation_p.A165V|RNF24_uc002wkj.2_Missense_Mutation_p.A144V	NM_007219	NP_009150	Q9Y225	RNF24_HUMAN	ring finger protein 24 isoform 1	144						Golgi membrane|integral to membrane	zinc ion binding				0						AATGTTCTCTGCCCCAGGAAG	0.562000													67	102					0	0	0	0
PHACTR3	116154	broad.mit.edu	37	20	58349395	58349395	+	Missense_Mutation	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr20:58349395G>C	uc002yau.2	+	7	1491	c.1024G>C	c.(1024-1026)GCT>CCT	p.A342P	PHACTR3_uc002yat.2_Missense_Mutation_p.A339P|PHACTR3_uc010zzw.1_Missense_Mutation_p.A301P|PHACTR3_uc002yav.2_Missense_Mutation_p.A301P|PHACTR3_uc002yaw.2_Missense_Mutation_p.A301P|PHACTR3_uc002yax.2_Missense_Mutation_p.A231P	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	342						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			GAGGGAGGAGGCTTGGAGCTT	0.512000													35	48					0	0	0	0
TCFL5	10732	broad.mit.edu	37	20	61488812	61488812	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr20:61488812C>T	uc002ydp.2	-	4	1266	c.1173G>A	c.(1171-1173)CAG>CAA	p.Q391Q	TCFL5_uc002ydo.2_Silent_p.Q164Q|TCFL5_uc002ydq.2_Silent_p.Q390Q	NM_006602	NP_006593	Q9UL49	TCFL5_HUMAN	transcription factor-like 5 protein	391					cell differentiation|multicellular organismal development|regulation of cell differentiation|regulation of cell proliferation|spermatogenesis|transcription from RNA polymerase II promoter		DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)	1	Breast(26;5.68e-08)					GGGGCCCACTCTGGGCCTGCT	0.572000													166	49					0	0	0	0
DSCAM	1826	broad.mit.edu	37	21	41684252	41684252	+	Silent	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr21:41684252T>C	uc002yyq.1	-	9	2270	c.1818A>G	c.(1816-1818)AGA>AGG	p.R606R	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	606	Extracellular (Potential).|Ig-like C2-type 7.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAATGGAGAATCTTGGAAACT	0.478000													16	29					0	0	0	0
MYO18B	84700	broad.mit.edu	37	22	26242142	26242142	+	Silent	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr22:26242142C>G	uc003abz.1	+	19	3694	c.3444C>G	c.(3442-3444)GGC>GGG	p.G1148G	MYO18B_uc003aca.1_Silent_p.G1029G|MYO18B_uc010guy.1_Silent_p.G1030G|MYO18B_uc010guz.1_Silent_p.G1029G|MYO18B_uc011aka.1_Silent_p.G302G|MYO18B_uc011akb.1_Silent_p.G661G	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1148	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						GCCTGGAGGGCACCTCCCAGC	0.667000													10	23					0	0	0	0
ADM2	79924	broad.mit.edu	37	22	50921172	50921172	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr22:50921172C>T	uc003blj.2	+	2	552	c.287C>T	c.(286-288)TCG>TTG	p.S96L	ADM2_uc011ary.1_Missense_Mutation_p.S96L	NM_024866	NP_079142	Q7Z4H4	ADM2_HUMAN	adrenomedullin 2 precursor	96					positive regulation of angiogenesis	extracellular region	hormone activity				0		all_cancers(38;4.58e-14)|all_epithelial(38;1.12e-12)|all_lung(38;3.07e-05)|Breast(42;6.27e-05)|Lung NSC(38;0.000813)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		CGAAGACACTCGGGCCCCCGC	0.697000													18	11					0	0	0	0
CLDND1	56650	broad.mit.edu	37	3	98240121	98240121	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:98240121T>A	uc003dsp.2	-	2	1028	c.148A>T	c.(148-150)ATC>TTC	p.I50F	CLDND1_uc003dso.2_Missense_Mutation_p.I50F|CLDND1_uc003dsq.2_Missense_Mutation_p.I50F|CLDND1_uc003dss.2_Missense_Mutation_p.I50F|CLDND1_uc003dsr.2_Intron|CLDND1_uc003dst.2_Missense_Mutation_p.I73F|CLDND1_uc003dsu.2_Missense_Mutation_p.I50F|CLDND1_uc003dsv.2_Missense_Mutation_p.I50F	NM_019895	NP_063948	Q9NY35	CLDN1_HUMAN	claudin domain containing 1 protein isoform a	50						integral to membrane				ovary(1)	1						TCATCCCAGATGCTTTTATTC	0.413000													39	67					0	0	0	0
MORC1	27136	broad.mit.edu	37	3	108773582	108773582	+	Silent	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:108773582G>T	uc003dxl.2	-	14	1410	c.1323C>A	c.(1321-1323)ACC>ACA	p.T441T	MORC1_uc011bhn.1_Silent_p.T441T	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	441					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						CACTGATGCCGGTGTCCTTAC	0.373000													62	99					2.03652e-46	2.45626e-46	1	0
ALDH1L1	10840	broad.mit.edu	37	3	125856801	125856801	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:125856801A>T	uc003eim.1	-	10	1269	c.1079T>A	c.(1078-1080)CTG>CAG	p.L360Q	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.L259Q|ALDH1L1_uc003eio.2_Missense_Mutation_p.L62Q|ALDH1L1_uc010hsf.1_Missense_Mutation_p.L386Q	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	360	Acyl carrier.				10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	TTCCTCCACCAGCCTGGAGGA	0.567000													45	42					0	0	0	0
SI	6476	broad.mit.edu	37	3	164739124	164739124	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:164739124G>T	uc003fei.2	-	27	3209	c.3147C>A	c.(3145-3147)AAC>AAA	p.N1049K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1049	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	TGGTTGGAATGTTTAACGGTA	0.368000										HNSCC(35;0.089)			360	225					1.92225e-182	2.33627e-182	1	0
SERPINI1	5274	broad.mit.edu	37	3	167525052	167525052	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:167525052T>A	uc003ffa.3	+	6	1100	c.902T>A	c.(901-903)ATT>AAT	p.I301N	SERPINI1_uc003ffb.3_Missense_Mutation_p.I301N	NM_001122752	NP_001116224	Q99574	NEUS_HUMAN	neuroserpin precursor	301					central nervous system development|peripheral nervous system development|regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			skin(1)	1						GAACAGGAAATTGATTTAAAA	0.338000													67	235					0	0	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540249	169540249	+	Silent	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:169540249C>T	uc003fgb.2	+	1	540	c.540C>T	c.(538-540)TTC>TTT	p.F180F		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	180	LRR 7.										0						TTGAAGTTTTCCCCCAGGAGC	0.517000													29	262					0	0	0	0
SKIL	6498	broad.mit.edu	37	3	170102443	170102443	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:170102443A>G	uc003fgu.2	+	4	2031	c.1319A>G	c.(1318-1320)AAG>AGG	p.K440R	SKIL_uc011bps.1_Missense_Mutation_p.K420R|SKIL_uc003fgv.2_Intron|SKIL_uc003fgw.2_Missense_Mutation_p.K440R	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	440					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			CAGTCAGAGAAGGCTCACAGT	0.398000													77	401					0	0	0	0
PEX5L	51555	broad.mit.edu	37	3	179592166	179592166	+	Missense_Mutation	SNP	G	C	C	rs139208096		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:179592166G>C	uc003fki.1	-	7	805	c.675C>G	c.(673-675)AGC>AGG	p.S225R	PEX5L_uc011bqd.1_Missense_Mutation_p.S182R|PEX5L_uc011bqe.1_Missense_Mutation_p.S33R|PEX5L_uc011bqf.1_Missense_Mutation_p.S117R|PEX5L_uc003fkj.1_Missense_Mutation_p.S190R|PEX5L_uc010hxd.1_Missense_Mutation_p.S223R|PEX5L_uc011bqg.1_Missense_Mutation_p.S201R|PEX5L_uc011bqh.1_Missense_Mutation_p.S166R	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	225					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			AGTTGAGGGCGCTTTTTCCAC	0.393000													75	202					0	0	0	0
CCDC39	339829	broad.mit.edu	37	3	180397180	180397180	+	Translation_Start_Site	SNP	G	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:180397180G>C	uc010hxe.2	-	1	104	c.-11C>G	c.(-13--9)ATCCG>ATGCG		CCDC39_uc003fkn.2_Intron	NM_181426	NP_852091	Q9UFE4	CCD39_HUMAN	coiled-coil domain containing 39						axonemal dynein complex assembly|ciliary cell motility|cilium movement involved in determination of left/right asymmetry|flagellar cell motility	cilium axoneme|cytoplasm|cytoskeleton				ovary(4)	4	all_cancers(143;9.31e-15)|Ovarian(172;0.0212)		OV - Ovarian serous cystadenocarcinoma(80;5.62e-23)|GBM - Glioblastoma multiforme(14;0.000558)			ACTGCAAACGGATAGAGAAGA	0.582000													55	432					0	0	0	0
IQCG	84223	broad.mit.edu	37	3	197619560	197619560	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:197619560A>G	uc003fyo.2	-	9	1180	c.1034T>C	c.(1033-1035)CTA>CCA	p.L345P	IQCG_uc003fyn.2_Missense_Mutation_p.L247P|IQCG_uc003fyp.2_Missense_Mutation_p.L345P|IQCG_uc003fym.2_Missense_Mutation_p.L46P	NM_001134435	NP_001127907	Q9H095	IQCG_HUMAN	IQ motif containing G	345											0	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;7.19e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.149)		GAGAGCATTTAGTTCATTCTG	0.438000													87	604					0	0	0	0
ANK2	287	broad.mit.edu	37	4	114277023	114277023	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr4:114277023G>A	uc003ibe.3	+	38	7349	c.7249G>A	c.(7249-7251)GAT>AAT	p.D2417N	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Intron|ANK2_uc011cgb.1_Missense_Mutation_p.D2432N	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	2384					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCCTAGCCGAGATAGCGAAGT	0.498000													18	24					0	0	0	0
TIGD4	201798	broad.mit.edu	37	4	153691671	153691671	+	Nonsense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr4:153691671C>T	uc003imy.2	-	2	1268	c.486G>A	c.(484-486)TGG>TGA	p.W162*		NM_145720	NP_663772	Q8IY51	TIGD4_HUMAN	tigger transposable element derived 4	162					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	chromatin binding|DNA binding			ovary(1)	1	all_hematologic(180;0.093)					CATTTTGGTACCAGACAGTCG	0.363000													24	21					0	0	0	0
TKTL2	84076	broad.mit.edu	37	4	164393621	164393621	+	Silent	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr4:164393621C>G	uc003iqp.3	-	1	1427	c.1266G>C	c.(1264-1266)GGG>GGC	p.G422G		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	422						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CAGTGGATACCCCACAGTGGG	0.478000													26	21					0	0	0	0
SEMA5A	9037	broad.mit.edu	37	5	9202097	9202097	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr5:9202097T>C	uc003jek.2	-	9	1614	c.902A>G	c.(901-903)GAT>GGT	p.D301G		NM_003966	NP_003957	Q13591	SEM5A_HUMAN	semaphorin 5A precursor	301	Sema.|Extracellular (Potential).				cell adhesion|cell-cell signaling	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)	2						ATAGATCAAATCCAGCTCAGG	0.438000													28	49					0	0	0	0
DNAH5	1767	broad.mit.edu	37	5	13876803	13876803	+	Missense_Mutation	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr5:13876803G>T	uc003jfd.2	-	22	3428	c.3386C>A	c.(3385-3387)TCC>TAC	p.S1129Y		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1129	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTTTTTGGTGGAGTTGATAAT	0.383000									Kartagener_syndrome				20	67					2.52088e-20	2.97238e-20	1	0
PDZD2	23037	broad.mit.edu	37	5	32088330	32088330	+	Silent	SNP	G	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr5:32088330G>T	uc003jhl.2	+	20	5164	c.4776G>T	c.(4774-4776)TCG>TCT	p.S1592S	PDZD2_uc003jhm.2_Silent_p.S1592S	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1592					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						AAGATCCTTCGGAGTCAGAAG	0.577000													60	97					2.6711e-34	3.19723e-34	1	0
MAP3K1	4214	broad.mit.edu	37	5	56167806	56167806	+	Silent	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr5:56167806A>T	uc003jqw.3	+	7	1872	c.1371A>T	c.(1369-1371)ACA>ACT	p.T457T		NM_005921	NP_005912	Q13233	M3K1_HUMAN	mitogen-activated protein kinase kinase kinase	457	RING-type.				cellular response to mechanical stimulus|innate immune response|MyD88-dependent toll-like receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	ATP binding|zinc ion binding			ovary(1)|skin(1)	2		Lung NSC(810;4.65e-05)|Prostate(74;0.0132)|Breast(144;0.0321)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;6.08e-40)		AAAGTCTTACAGTGTGTGAAG	0.428000													27	30					0	0	0	0
PAPD4	167153	broad.mit.edu	37	5	78936938	78936938	+	Silent	SNP	T	C	C	rs142919591	byFrequency	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr5:78936938T>C	uc010jae.1	+	7	1009	c.591T>C	c.(589-591)CTT>CTC	p.L197L	PAPD4_uc003kgb.2_Silent_p.L197L|PAPD4_uc010jaf.1_Silent_p.L197L|PAPD4_uc003kga.2_Silent_p.L197L|PAPD4_uc003kfz.2_Silent_p.L197L	NM_001114393	NP_001107865	Q6PIY7	GLD2_HUMAN	PAP associated domain containing 4	197					histone mRNA catabolic process|mRNA processing|RNA polyadenylation	cytoplasm	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity			ovary(1)	1		Lung NSC(167;0.00293)|all_lung(232;0.00323)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;8.61e-47)|Epithelial(54;1.32e-41)|all cancers(79;2.45e-36)		AAAGCAGACTTTTTTTGGTTG	0.318000													8	129					0	0	0	0
PCDHB2	56133	broad.mit.edu	37	5	140475050	140475051	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr5:140475050_140475051GG>TA	uc003lil.2	+	1	814_815	c.676_677GG>TA	c.(676-678)GGC>TAC	p.G226Y	PCDHB2_uc003lim.1_5'UTR	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	226	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACCCAGGTCCGGCACGGCCCTG	0.579000													17	34					0	0	0	0
PCDHGA4	56111	broad.mit.edu	37	5	140735600	140735600	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr5:140735600C>A	uc003ljq.1	+	1	833	c.833C>A	c.(832-834)ACG>AAG	p.T278K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljp.1_Missense_Mutation_p.T278K	NM_018917	NP_061740	Q9Y5G9	PCDG4_HUMAN	protocadherin gamma subfamily A, 4 isoform 1	278	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGACGTGACGTATTCTTTC	0.458000													11	25					1.58986e-06	1.7324e-06	1	0
FAF2	23197	broad.mit.edu	37	5	175913467	175913467	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr5:175913467G>A	uc003mej.3	+	3	297	c.244G>A	c.(244-246)GTT>ATT	p.V82I		NM_014613	NP_055428	Q96CS3	FAF2_HUMAN	UBX domain containing 8	82					response to unfolded protein	endoplasmic reticulum|lipid particle	protein binding			ovary(1)	1						CTACAGCTATGTTGTCTCAAG	0.443000													42	65					0	0	0	0
RREB1	6239	broad.mit.edu	37	6	7231221	7231221	+	Silent	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr6:7231221G>A	uc003mxc.2	+	10	3279	c.2889G>A	c.(2887-2889)GCG>GCA	p.A963A	RREB1_uc003mxb.2_Silent_p.A963A|RREB1_uc010jnx.2_Silent_p.A963A	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	963					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				AGGAGGAGGCGGGGAGCAGCG	0.632000													17	12					0	0	0	0
SASH1	23328	broad.mit.edu	37	6	148840966	148840966	+	Silent	SNP	G	A	A	rs138202713	byFrequency	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr6:148840966G>A	uc003qme.1	+	10	1621	c.1146G>A	c.(1144-1146)CAG>CAA	p.Q382Q	SASH1_uc011eeb.1_Silent_p.Q143Q	NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	382							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		AAAAGGCCCAGAAAGTGTCCC	0.547000													4	21					0	0	0	0
MTHFD1L	25902	broad.mit.edu	37	6	151293189	151293189	+	Missense_Mutation	SNP	T	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr6:151293189T>A	uc003qob.2	+	20	2388	c.2120T>A	c.(2119-2121)TTT>TAT	p.F707Y	MTHFD1L_uc011een.1_RNA|MTHFD1L_uc011eeo.1_Missense_Mutation_p.F708Y|MTHFD1L_uc003qoc.2_Missense_Mutation_p.F655Y	NM_015440	NP_056255	Q6UB35	C1TM_HUMAN	methylenetetrahydrofolate dehydrogenase (NADP+	707	Formyltetrahydrofolate synthetase.				folic acid-containing compound biosynthetic process|formate metabolic process|one-carbon metabolic process|tetrahydrofolate metabolic process	mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|protein homodimerization activity			ovary(3)|large_intestine(1)	4		Ovarian(120;0.128)		OV - Ovarian serous cystadenocarcinoma(155;8.7e-12)		GAAGAAGGATTTGTAGGTAAG	0.398000													28	56					0	0	0	0
TIAM2	26230	broad.mit.edu	37	6	155451295	155451295	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr6:155451295C>T	uc003qqb.2	+	6	2211	c.938C>T	c.(937-939)CCC>CTC	p.P313L	TIAM2_uc003qqe.2_Missense_Mutation_p.P313L	NM_012454	NP_036586	Q8IVF5	TIAM2_HUMAN	T-cell lymphoma invasion and metastasis 2	313					apoptosis|cellular lipid metabolic process|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|filopodium|growth cone|lamellipodium	receptor signaling protein activity|Rho guanyl-nucleotide exchange factor activity			ovary(3)|breast(1)	4		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;8.1e-13)|BRCA - Breast invasive adenocarcinoma(81;0.0053)		AGCCTCTCCCCCTCAGGTATC	0.557000													27	51					0	0	0	0
ZNF804B	219578	broad.mit.edu	37	7	88962841	88962841	+	Missense_Mutation	SNP	G	A	A	rs139327261	byFrequency	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr7:88962841G>A	uc011khi.1	+	4	1083	c.545G>A	c.(544-546)CGG>CAG	p.R182Q		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	182						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			GATAAACAGCGGTCCACCATG	0.418000										HNSCC(36;0.09)			33	69					0	0	0	0
SLC7A2	6542	broad.mit.edu	37	8	17407860	17407860	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr8:17407860T>C	uc011kyc.1	+	5	918	c.749T>C	c.(748-750)ATG>ACG	p.M250T	SLC7A2_uc011kyd.1_Missense_Mutation_p.M290T|SLC7A2_uc011kye.1_Missense_Mutation_p.M290T|SLC7A2_uc011kyf.1_Missense_Mutation_p.M250T	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	250	Helical; (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	GGTGGCTTTATGCCTTATGGC	0.448000													35	18					0	0	0	0
KCNU1	157855	broad.mit.edu	37	8	36766941	36766941	+	Missense_Mutation	SNP	C	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr8:36766941C>G	uc010lvw.2	+	21	2306	c.2219C>G	c.(2218-2220)GCC>GGC	p.A740G	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	740	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CCCTTGAGAGCCAGCAACTAT	0.458000													93	230					0	0	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70667725	70667725	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr8:70667725T>C	uc003xyl.2	-	4	1899	c.1192A>G	c.(1192-1194)AAA>GAA	p.K398E	SLCO5A1_uc010lzb.2_Missense_Mutation_p.K398E|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Missense_Mutation_p.K398E|SLCO5A1_uc010lzc.2_Missense_Mutation_p.K398E	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	398	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			TTGTTTGATTTCTCCTTCAGA	0.358000													31	40					0	0	0	0
COL14A1	7373	broad.mit.edu	37	8	121228628	121228628	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr8:121228628G>A	uc003yox.2	+	14	1901	c.1636G>A	c.(1636-1638)GTT>ATT	p.V546I	COL14A1_uc003yoy.2_Missense_Mutation_p.V224I|COL14A1_uc010mde.1_Missense_Mutation_p.V224I	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	546	Fibronectin type-III 4.				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			AATCTCCAATGTTGGCTCTAA	0.353000													49	65					0	0	0	0
FAM135B	51059	broad.mit.edu	37	8	139277978	139277978	+	Missense_Mutation	SNP	A	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr8:139277978A>G	uc003yuy.2	-	4	436	c.265T>C	c.(265-267)TTC>CTC	p.F89L	FAM135B_uc003yux.2_5'UTR|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	89										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TGAACTCGGAAGACCACAGCA	0.488000										HNSCC(54;0.14)			29	50					0	0	0	0
JRK	8629	broad.mit.edu	37	8	143745934	143745934	+	Missense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr8:143745934C>A	uc003ywo.2	-	3	2056	c.1542G>T	c.(1540-1542)CAG>CAT	p.Q514H	JRK_uc003ywp.2_Missense_Mutation_p.Q514H|JRK_uc010mew.1_Missense_Mutation_p.S515I	NM_001077527	NP_001070995			jerky isoform b												0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;2.31e-05)				GCGCCCgcagctgccccactt	0.343000													4	15					0.00909568	0.00939292	1	0
GLIS3	169792	broad.mit.edu	37	9	4117821	4117821	+	Missense_Mutation	SNP	T	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:4117821T>C	uc003zhw.1	-	3	1386	c.1192A>G	c.(1192-1194)AAA>GAA	p.K398E	GLIS3_uc003zhx.1_Missense_Mutation_p.K553E|GLIS3_uc003zic.1_Missense_Mutation_p.K553E|GLIS3_uc003zie.1_Missense_Mutation_p.K553E|GLIS3_uc010mhh.1_Missense_Mutation_p.K428E|GLIS3_uc003zid.1_Missense_Mutation_p.K331E|GLIS3_uc010mhi.1_Missense_Mutation_p.K360E|GLIS3_uc003zif.1_Missense_Mutation_p.K331E|GLIS3_uc003zig.1_Missense_Mutation_p.K397E|GLIS3_uc003zih.1_Missense_Mutation_p.K331E|GLIS3_uc003zhy.1_Missense_Mutation_p.K331E|GLIS3_uc003zhz.1_Missense_Mutation_p.K331E|GLIS3_uc003zib.1_Missense_Mutation_p.K397E|GLIS3_uc010mhg.1_Missense_Mutation_p.K331E	NM_152629	NP_689842	Q8NEA6	GLIS3_HUMAN	GLIS family zinc finger 3 isoform b	398	C2H2-type 2; atypical.				negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter		DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(2;0.00464)|Breast(48;0.148)		Lung(2;0.00163)|GBM - Glioblastoma multiforme(50;0.00301)|LUSC - Lung squamous cell carcinoma(2;0.0148)		ATCAGCAGTTTATAGCGGGCG	0.567000													69	48					0	0	0	0
ZNF484	83744	broad.mit.edu	37	9	95610231	95610231	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:95610231C>T	uc004asu.1	-	5	987	c.838G>A	c.(838-840)GAA>AAA	p.E280K	ANKRD19_uc004asr.3_Intron|ZNF484_uc011lub.1_Missense_Mutation_p.E282K|ZNF484_uc010mrb.1_Missense_Mutation_p.E244K|ZNF484_uc004asv.1_Missense_Mutation_p.E244K	NM_031486	NP_113674	Q5JVG2	ZN484_HUMAN	zinc finger protein 484 isoform a	280	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCATGGCATTCATGCTGCTTT	0.428000													34	102					0	0	0	0
KIAA0368	23392	broad.mit.edu	37	9	114173351	114173351	+	Missense_Mutation	SNP	T	G	G			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:114173351T>G	uc004bfe.1	-	23	2820	c.2820A>C	c.(2818-2820)AAA>AAC	p.K940N		NM_001080398	NP_001073867			KIAA0368 protein												0						ACATTCTCATTTTCTTTTTAG	0.418000													188	190					0	0	0	0
PAPPA	5069	broad.mit.edu	37	9	119065052	119065052	+	Nonsense_Mutation	SNP	C	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:119065052C>A	uc004bjn.2	+	10	3351	c.2970C>A	c.(2968-2970)TGC>TGA	p.C990*	PAPPA_uc011lxp.1_Nonsense_Mutation_p.C685*|PAPPA_uc011lxq.1_Nonsense_Mutation_p.C365*	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	990					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCAGCCGGTGCTATTTCCATG	0.458000													17	74					0.00278032	0.00294826	1	0
OLFML2A	169611	broad.mit.edu	37	9	127557384	127557384	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:127557384G>A	uc004bov.2	+	3	549	c.436G>A	c.(436-438)GCC>ACC	p.A146T	OLFML2A_uc010mwr.1_Intron	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	146											0						CCACAAGGTGGCCTCCCAGAT	0.652000													5	12					0	0	0	0
OLFML2A	169611	broad.mit.edu	37	9	127566456	127566456	+	Missense_Mutation	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:127566456G>A	uc004bov.2	+	6	1116	c.1003G>A	c.(1003-1005)GCA>ACA	p.A335T	OLFML2A_uc010mwr.1_Missense_Mutation_p.A299T|OLFML2A_uc004bow.2_Missense_Mutation_p.A121T	NM_182487	NP_872293	Q68BL7	OLM2A_HUMAN	olfactomedin-like 2A precursor	335											0						GCCCAACTCCGCAGAGCAGGA	0.562000													64	43					0	0	0	0
SCAI	286205	broad.mit.edu	37	9	127715225	127715225	+	Missense_Mutation	SNP	C	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:127715225C>T	uc004bpe.2	-	18	1763	c.1682G>A	c.(1681-1683)CGA>CAA	p.R561Q	SCAI_uc004bpd.2_Missense_Mutation_p.R584Q|SCAI_uc010mwu.2_RNA	NM_001144877	NP_001138349	Q8N9R8	SCAI_HUMAN	suppressor of cancer cell invasion isoform 2	561					negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|integral to membrane|nucleus	protein binding|transcription corepressor activity			ovary(2)|breast(2)|central_nervous_system(1)	5						TGGATAATTTCGTGTTTCCTG	0.358000													64	45					0	0	0	0
MRPS2	51116	broad.mit.edu	37	9	138395504	138395504	+	Missense_Mutation	SNP	A	T	T			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:138395504A>T	uc004cfv.3	+	4	490	c.416A>T	c.(415-417)AAG>ATG	p.K139M	MRPS2_uc004cfw.3_Missense_Mutation_p.K49M|MRPS2_uc004cfx.3_Missense_Mutation_p.K54M|MRPS2_uc010nat.2_Missense_Mutation_p.K120M|uc004cfy.2_RNA	NM_016034	NP_057118	Q9Y399	RT02_HUMAN	mitochondrial ribosomal protein S2	139					translation	mitochondrion|small ribosomal subunit	structural constituent of ribosome				0				OV - Ovarian serous cystadenocarcinoma(145;1.46e-53)|Epithelial(140;2.04e-47)|all cancers(34;1.23e-42)		GCCTACCGCAAGGGCATCATC	0.577000													30	70					0	0	0	0
NOXA1	10811	broad.mit.edu	37	9	140327703	140327704	+	Missense_Mutation	DNP	CG	TT	TT			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr9:140327703_140327704CG>TT	uc004cmv.2	+	10	1032_1033	c.897_898CG>TT	c.(895-900)CCCGCG>CCTTCG	p.A300S	C9orf167_uc011mew.1_Intron|NOXA1_uc004cmu.2_Missense_Mutation_p.A300S|NOXA1_uc010nch.2_Missense_Mutation_p.A244S	NM_006647	NP_006638	Q86UR1	NOXA1_HUMAN	NADPH oxidase activator 1	300			Missing (in NOXA1truncated, a cDNA isolated from Caco-2 cells treated with butyrate).		regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|superoxide metabolic process	cytoplasm|NADPH oxidase complex	Rac GTPase binding|superoxide-generating NADPH oxidase activator activity				0	all_cancers(76;0.0926)			OV - Ovarian serous cystadenocarcinoma(145;0.000238)|Epithelial(140;0.000982)		GTGAGGACCCCGCGGGTGCTGG	0.653000													8	11					0	0	0	0
CNKSR2	22866	broad.mit.edu	37	X	21515965	21515965	+	Splice_Site	SNP	G	A	A			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chrX:21515965G>A	uc004czx.1	+	7	777	c.741_splice	c.e7+1	p.N247_splice	CNKSR2_uc004czw.2_Splice_Site_p.N247_splice|CNKSR2_uc011mjn.1_Splice_Site_p.N247_splice|CNKSR2_uc011mjo.1_Splice_Site_p.N247_splice	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras						regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						CACAGAAAATGTAAGTATTCT	0.308000													22	10					0	0	0	0
NXF3	56000	broad.mit.edu	37	X	102337236	102337236	+	Missense_Mutation	SNP	A	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chrX:102337236A>C	uc004eju.2	-	9	908	c.837T>G	c.(835-837)TGT>TGG	p.C279W	NXF3_uc010noi.1_Missense_Mutation_p.C129W|NXF3_uc011mrw.1_Missense_Mutation_p.C279W|NXF3_uc011mrx.1_Missense_Mutation_p.C190W	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	279						cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						TTCTGTCCGCACACTTCTCTC	0.532000													11	129					0	0	0	0
MST1P2	11209	broad.mit.edu	37	1	16974141	16974141	+	RNA	DEL	G	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr1:16974141delG	uc009vow.2	+	5		c.951delG			CROCCL1_uc001azg.1_5'Flank|CROCCL1_uc001azi.1_5'Flank|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						TGGCTTGGCCGGGGAGGTCAG	0.667													---	---	---							
Unknown	0	broad.mit.edu	37	10	110821136	110821136	+	IGR	DEL	G	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr10:110821136delG								None (None upstream) : XPNPEP1 (803388 downstream)																							cacaccctctggggccttggg	0.000													---	---	---							
ODF3	113746	broad.mit.edu	37	11	194639	194641	+	5'Flank	DEL	GGG	-	-	rs112126401		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:194639_194641delGGG	uc001lob.2	+						ODF3_uc010qvk.1_5'Flank|ODF3_uc001loc.2_5'Flank	NM_053280	NP_444510	Q96PU9	ODF3A_HUMAN	outer dense fiber of sperm tails 3						cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm				ovary(1)	1		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		GAACACACTCGGGGCCACAGCCA	0.552													---	---	---							
UBQLN3	50613	broad.mit.edu	37	11	5529918	5529920	+	In_Frame_Del	DEL	TGG	-	-	rs2234451	byFrequency	TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr11:5529918_5529920delTGG	uc001may.1	-	2	955_957	c.869_871delCCA	c.(868-873)ACCAGC>AGC	p.T290del	HBG2_uc001mak.1_Intron	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	290										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GAAGGTTGGCTGGTGGTGGTGGT	0.537													---	---	---							
CEP290	80184	broad.mit.edu	37	12	88512304	88512305	+	Frame_Shift_Ins	INS	-	T	T	rs77980773		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr12:88512304_88512305insT	uc001tar.2	-	17	2010_2011	c.1666_1667insA	c.(1666-1668)ATTfs	p.I556fs	CEP290_uc001tat.2_Frame_Shift_Ins_p.I318fs|CEP290_uc009zsl.1_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	556	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						CATTTGACGAATTTTTTTTTTC	0.312													---	---	---							
Unknown	0	broad.mit.edu	37	15	45903012	45903012	+	IGR	DEL	T	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr15:45903012delT								PLDN (1104 upstream) : SQRDL (20334 downstream)																							TGAGAGATGCttttttttttt	0.244													---	---	---							
CALB2	794	broad.mit.edu	37	16	71423757	71423757	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr16:71423757delC	uc002faa.3	+	11	875	c.805delC	c.(805-807)CCCfs	p.P269fs	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_3'UTR	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	269	EF-hand 6.						calcium ion binding				0		Ovarian(137;0.125)				CTGCAGCGAGCCCCCCATGTA	0.587													---	---	---							
Unknown	0	broad.mit.edu	37	17	25289230	25289233	+	IGR	DEL	TCTA	-	-	rs138697975		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr17:25289230_25289233delTCTA								None (None upstream) : WSB1 (331873 downstream)																							GTTTGTTACCTCTATCTATTGACT	0.343													---	---	---							
ZNF791	163049	broad.mit.edu	37	19	12735473	12735473	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr19:12735473delG	uc002mua.2	+	3	302	c.140delG	c.(139-141)TGGfs	p.W47fs	ZNF791_uc010xml.1_Frame_Shift_Del_p.W15fs|ZNF791_uc010dyu.1_Intron|ZNF791_uc010xmm.1_Translation_Start_Site	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	47	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGGGAAAAATGGGAAGACCCG	0.313													---	---	---							
C19orf2	8725	broad.mit.edu	37	19	30433493	30433494	+	Frame_Shift_Ins	INS	-	C	C			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr19:30433493_30433494insC	uc002nsr.2	+	1	69_70	c.39_40insC	c.(37-42)TCGCCCfs	p.S13fs	C19orf2_uc002nsq.2_Intron|C19orf2_uc002nss.2_5'UTR	NM_003796	NP_003787	O94763	RMP_HUMAN	RPB5-mediating protein isoform a	13_14					protein folding|regulation of transcription from RNA polymerase II promoter|response to virus	DNA-directed RNA polymerase II, core complex|prefoldin complex	transcription corepressor activity|unfolded protein binding			ovary(1)|kidney(1)	2	Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)	Hepatocellular(1079;0.137)|Renal(1328;0.228)	STAD - Stomach adenocarcinoma(5;5.36e-06)|Lung(7;0.0144)|LUAD - Lung adenocarcinoma(5;0.115)	STAD - Stomach adenocarcinoma(1328;0.18)		CCGACCCCTCGCCCCCTTCGGC	0.762													---	---	---							
LTBP1	4052	broad.mit.edu	37	2	33614263	33614282	+	Frame_Shift_Del	DEL	AGCTGTGTAACATCCCCGTG	-	-	rs146752637		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr2:33614263_33614282delAGCTGTGTAACATCCCCGTG	uc002ros.2	+	32	4727_4746	c.4727_4746delAGCTGTGTAACATCCCCGTG	c.(4726-4746)CAGCTGTGTAACATCCCCGTGfs	p.Q1576fs	LTBP1_uc002rot.2_Frame_Shift_Del_p.Q1250fs|LTBP1_uc002rou.2_Frame_Shift_Del_p.Q1249fs|LTBP1_uc002rov.2_Frame_Shift_Del_p.Q1196fs|LTBP1_uc010ymz.1_Frame_Shift_Del_p.Q1207fs|LTBP1_uc010yna.1_Frame_Shift_Del_p.Q1154fs|LTBP1_uc010ynb.1_Frame_Shift_Del_p.Q473fs	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1575_1581					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GACTATGCTCAGCTGTGTAACATCCCCGTGACGGGACGCC	0.564													---	---	---							
Unknown	0	broad.mit.edu	37	3	31496929	31496930	+	IGR	DEL	AG	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr3:31496929_31496930delAG								GADL1 (560776 upstream) : STT3B (77561 downstream)																							GACAGAGGAAAGAGAGGAAAGC	0.525													---	---	---							
UGT2B7	7364	broad.mit.edu	37	4	69962284	69962290	+	Frame_Shift_Del	DEL	TTTTGCT	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-10A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	9c201383-26e2-4f85-b60e-8142f545c2e3	g.chr4:69962284_69962290delTTTTGCT	uc003heg.3	+	1	92_98	c.46_52delTTTTGCT	c.(46-54)TTTTGCTTTfs	p.F16fs	UGT2B7_uc010ihq.2_Frame_Shift_Del_p.F16fs	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	16_18					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						ACAACTGAGCTTTTGCTTTAGCTCTGG	0.420													---	---	---							
MST1P2	11209	broad.mit.edu	37	1	16974141	16974141	+	RNA	DEL	G	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr1:16974141delG	uc009vow.2	+	5		c.951delG			CROCCL1_uc001azg.1_5'Flank|CROCCL1_uc001azi.1_5'Flank|MST1P2_uc010ocg.1_RNA|MST1P2_uc010och.1_Intron|MST1P2_uc010oci.1_RNA|MST1P2_uc001azk.2_Intron|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_Intron|MST1P2_uc001azm.3_Intron					Homo sapiens cDNA FLJ53774 complete cds, moderately similar to Hepatocyte growth factor-like protein precursor.												0						TGGCTTGGCCGGGGAGGTCAG	0.667													---	---	---							
Unknown	0	broad.mit.edu	37	10	110821136	110821136	+	IGR	DEL	G	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr10:110821136delG								None (None upstream) : XPNPEP1 (803388 downstream)																							cacaccctctggggccttggg	0.000													---	---	---							
CEP290	80184	broad.mit.edu	37	12	88512304	88512305	+	Frame_Shift_Ins	INS	-	T	T	rs77980773		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr12:88512304_88512305insT	uc001tar.2	-	17	2010_2011	c.1666_1667insA	c.(1666-1668)ATTfs	p.I556fs	CEP290_uc001tat.2_Frame_Shift_Ins_p.I318fs|CEP290_uc009zsl.1_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	556	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						CATTTGACGAATTTTTTTTTTC	0.312													---	---	---							
CALB2	794	broad.mit.edu	37	16	71423757	71423757	+	Frame_Shift_Del	DEL	C	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr16:71423757delC	uc002faa.3	+	11	875	c.805delC	c.(805-807)CCCfs	p.P269fs	CALB2_uc010vme.1_RNA|CALB2_uc002fac.3_3'UTR	NM_001740	NP_001731	P22676	CALB2_HUMAN	calbindin 2 isoform 1	269	EF-hand 6.						calcium ion binding				0		Ovarian(137;0.125)				CTGCAGCGAGCCCCCCATGTA	0.587													---	---	---							
Unknown	0	broad.mit.edu	37	17	7858584	7858584	+	IGR	DEL	A	-	-	rs78611358		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr17:7858584delA								CNTROB (5689 upstream) : GUCY2D (47404 downstream)																							ctgtctcaagaaaaaaaaaaa	0.169													---	---	---							
ZNF791	163049	broad.mit.edu	37	19	12735473	12735473	+	Frame_Shift_Del	DEL	G	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr19:12735473delG	uc002mua.2	+	3	302	c.140delG	c.(139-141)TGGfs	p.W47fs	ZNF791_uc010xml.1_Frame_Shift_Del_p.W15fs|ZNF791_uc010dyu.1_Intron|ZNF791_uc010xmm.1_Translation_Start_Site	NM_153358	NP_699189	Q3KP31	ZN791_HUMAN	zinc finger protein 791	47	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GGGGAAAAATGGGAAGACCCG	0.313													---	---	---							
LTBP1	4052	broad.mit.edu	37	2	33614263	33614282	+	Frame_Shift_Del	DEL	AGCTGTGTAACATCCCCGTG	-	-	rs146752637		TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr2:33614263_33614282delAGCTGTGTAACATCCCCGTG	uc002ros.2	+	32	4727_4746	c.4727_4746delAGCTGTGTAACATCCCCGTG	c.(4726-4746)CAGCTGTGTAACATCCCCGTGfs	p.Q1576fs	LTBP1_uc002rot.2_Frame_Shift_Del_p.Q1250fs|LTBP1_uc002rou.2_Frame_Shift_Del_p.Q1249fs|LTBP1_uc002rov.2_Frame_Shift_Del_p.Q1196fs|LTBP1_uc010ymz.1_Frame_Shift_Del_p.Q1207fs|LTBP1_uc010yna.1_Frame_Shift_Del_p.Q1154fs|LTBP1_uc010ynb.1_Frame_Shift_Del_p.Q473fs	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1575_1581					negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GACTATGCTCAGCTGTGTAACATCCCCGTGACGGGACGCC	0.564													---	---	---							
Unknown	0	broad.mit.edu	37	3	31496929	31496930	+	IGR	DEL	AG	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr3:31496929_31496930delAG								GADL1 (560776 upstream) : STT3B (77561 downstream)																							GACAGAGGAAAGAGAGGAAAGC	0.525													---	---	---							
UGT2B7	7364	broad.mit.edu	37	4	69962284	69962290	+	Frame_Shift_Del	DEL	TTTTGCT	-	-			TCGA-CV-7430-01A-11D-2129-08	TCGA-CV-7430-11A-01D-2129-08									Somatic	Phase_I	Capture				Illumina GAIIx	29a4027f-4d4f-4133-b40a-3bfab6d2ac9e	268e0e78-73a5-43f9-a25f-cd862c4438bd	g.chr4:69962284_69962290delTTTTGCT	uc003heg.3	+	1	92_98	c.46_52delTTTTGCT	c.(46-54)TTTTGCTTTfs	p.F16fs	UGT2B7_uc010ihq.2_Frame_Shift_Del_p.F16fs	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	16_18					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						ACAACTGAGCTTTTGCTTTAGCTCTGG	0.420													---	---	---							
