Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	transcript_name	strand	transcript_status	amino_acid_change	ucsc_cons	normal_depth	normal_vaf	tumor_depth	tumor_vaf	rna_depth	rna_vaf	polyphen	sift	condel	domain
CROCC	9696	genome.wustl.edu	37	1	17257042	17257042	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_014675.3	+1	validated	p.R268G	1.000	17	0%	22	31.8%	-	-	unknown(0)	tolerated(0.25)	-	NULL
USP24	23358	genome.wustl.edu	37	1	55563319	55563319	+	Silent	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_015306.2	-1	validated	p.G1729	1.000	70	0%	51	27.5%	-	-	-	-	-	HMMPfam_UCH,superfamily_Cysteine proteinases
MR1	3140	genome.wustl.edu	37	1	181021484	181021484	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001531.1	+1	provisional	p.G240R	1.000	94	0%	141	24.8%	-	-	possibly_damaging(0.945)	deleterious(0)	deleterious(0.834)	HMMPfam_C1-set,HMMSmart_SM00407,superfamily_Immunoglobulin
LHX9	56956	genome.wustl.edu	37	1	197890500	197890500	+	Silent	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_020204.2	+1	reviewed	p.R148	0.742	52	0%	34	20.6%	-	-	-	-	-	HMMPfam_LIM,HMMSmart_SM00132,PatternScan_LIM_DOMAIN_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)
ASTL	431705	genome.wustl.edu	37	2	96798452	96798452	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001002036.3	-1	validated	p.S155L	1.000	13	0%	14	50%	-	-	probably_damaging(0.978)	deleterious(0)	deleterious(0.865)	"HMMPfam_Astacin,HMMSmart_SM00235,superfamily_Metalloproteases (""zincins"") catalytic domain"
TTN	7273	genome.wustl.edu	37	2	179489418	179489418	+	Silent	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	ENST00000356127	-1	known	p.T12295	1.000	57	0%	50	40%	-	-	-	-	-	HMMSmart_SM00409,HMMPfam_I-set
TTC21A	199223	genome.wustl.edu	37	3	39178397	39178397	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001105513.2	+1	validated	p.G1043R	0.957	79	0%	67	28.4%	-	-	probably_damaging(0.998)	tolerated(0.06)	deleterious(0.797)	superfamily_TPR-like
CTNNB1	1499	genome.wustl.edu	37	3	41266103	41266103	+	Missense_Mutation	SNP	G	G	A	rs121913399		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001098209.1	+1	reviewed	p.G34R	1.000	87	0%	44	31.8%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	NULL
BSN	8927	genome.wustl.edu	37	3	49662655	49662655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_003458.3	+1	reviewed	p.V158I	1.000	125	0%	105	31.4%	-	-	probably_damaging(0.971)	-	-	NULL
PIK3CA	5290	genome.wustl.edu	37	3	178936093	178936093	+	Missense_Mutation	SNP	G	G	T	rs121913275		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_006218.2	+1	reviewed	p.E545D	1.000	101	0%	71	42.3%	-	-	probably_damaging(0.998)	tolerated(0.05)	deleterious(0.820)	HMMPfam_PI3Ka,HMMSmart_PI3Ka,superfamily_ARM-type_fold
EPHA5	2044	genome.wustl.edu	37	4	66230818	66230818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_004439.5	-1	reviewed	p.R718H	1.000	232	0%	106	43.4%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Pkinase_Tyr,HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like)
PCDHA6	56142	genome.wustl.edu	37	5	140209296	140209296	+	Silent	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_018909.2	+1	reviewed	p.A540	0.996	66	0%	112	41.1%	-	-	-	-	-	HMMPfam_Cadherin,HMMSmart_SM00112,superfamily_Cadherin-like
TNIP1	10318	genome.wustl.edu	37	5	150416376	150416376	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_006058.3	-1	validated	p.T457M	0.998	105	0%	101	27.7%	-	-	benign(0.013)	tolerated(0.14)	neutral(0.250)	NULL
SGK1	6446	genome.wustl.edu	37	6	134491995	134491997	+	In_Frame_Del	DEL	TTA	TTA	-	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	TTA	TTA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001143676.1	-1	reviewed	p.N460in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	HMMSmart_S_TK_X,superfamily_Kinase_like
SASH1	23328	genome.wustl.edu	37	6	148808754	148808756	+	In_Frame_Del	DEL	AGG	AGG	-	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_015278.3	+1	validated	p.E212in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
ABHD11	83451	genome.wustl.edu	37	7	73150872	73150872	+	RNA	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NR_026910.1	-1	validated	NULL	0.008	68	0%	108	31.5%	-	-	-	-	-	-
TNKS	8658	genome.wustl.edu	37	8	9622273	9622273	+	Silent	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_003747.2	+1	validated	p.G1140	1.000	159	0%	132	25.8%	-	-	-	-	-	HMMPfam_PARP,superfamily_ADP-ribosylation
C8orf74	203076	genome.wustl.edu	37	8	10532329	10532331	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001040032.1	+1	validated	p.L76in_frame_del	1.000:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
PCM1	5108	genome.wustl.edu	37	8	17867106	17867108	+	In_Frame_Del	DEL	TCT	TCT	-	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	TCT	TCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_006197.3	+1	validated	p.L1673in_frame_del	0.996:1.000:1.000	-	-	-	-	-	-	-	-	-	NULL
CHMP4C	92421	genome.wustl.edu	37	8	82644956	82644956	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_152284.3	+1	validated	p.T32N	1.000	27	0%	58	24.1%	-	-	probably_damaging(0.997)	deleterious(0.01)	deleterious(0.872)	HMMPfam_Snf7
UBR5	51366	genome.wustl.edu	37	8	103307677	103307678	+	Frame_Shift_Del	DEL	CT	CT	-	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	CT	CT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_015902.4	-1	reviewed	p.R1299fs	1.000:0.982	-	-	-	-	-	-	-	-	-	NULL
OR13C5	138799	genome.wustl.edu	37	9	107361094	107361094	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001004482.1	-1	provisional	p.V201L	0.003	130	0%	95	35.8%	-	-	possibly_damaging(0.866)	tolerated(0.06)	deleterious(0.658)	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like
CAMSAP1	157922	genome.wustl.edu	37	9	138774890	138774890	+	Silent	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_015447.3	-1	validated	p.Y65	0.989	79	0%	82	40.2%	-	-	-	-	-	NULL
PTEN	5728	genome.wustl.edu	37	10	89720852	89720852	+	Nonsense_Mutation	SNP	C	C	T	rs121909231	byCluster	TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	ENST00000371953	+1	known	p.R335*	1.000	52	0%	28	75%	-	-	-	-	-	superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_PTEN_C2
ENSG00000219061	0	genome.wustl.edu	37	11	49860150	49860150	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	ENST00000405176	-1	known	p.L149V	0.006	73	0%	41	43.9%	-	-	-	-	-	NULL
OR9I1	219954	genome.wustl.edu	37	11	57886603	57886603	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001005211.1	-1	validated	p.T105I	0.951	135	0%	65	40%	-	-	probably_damaging(1)	tolerated(0.58)	deleterious(0.505)	HMMPfam_7tm_1,superfamily_SSF81321
SLC22A6	9356	genome.wustl.edu	37	11	62744336	62744336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_004790.3	-1	reviewed	p.R541Q	0.000	176	0%	136	36.8%	-	-	benign(0)	tolerated(0.27)	neutral(0.034)	NULL
LOC390251	390251	genome.wustl.edu	37	11	113660246	113660246	+	RNA	SNP	G	G	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	XR_016610.3	+1	model	NULL	1.000	34	0%	44	43.2%	-	-	-	-	-	-
TEAD4	7004	genome.wustl.edu	37	12	3147205	3147205	+	Silent	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_003213.2	+1	reviewed	p.P323	0.016	50	0%	62	29%	-	-	-	-	-	HMMPfam_TEA
DAO	1610	genome.wustl.edu	37	12	109292545	109292545	+	Silent	SNP	C	C	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001917.4	+1	reviewed	p.G262	1.000	110	0%	113	32.7%	-	-	-	-	-	HMMPfam_DAO,superfamily_Nucleotide-binding domain,superfamily_FAD-linked reductases C-terminal domain
ACADS	35	genome.wustl.edu	37	12	121176677	121176677	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_000017.2	+1	reviewed	p.R330C	1.000	31	0%	36	36.1%	-	-	probably_damaging(1)	deleterious(0)	deleterious(0.945)	HMMPfam_Acyl-CoA_dh_1,superfamily_AcylCoADH_C_like
FOXN3	1112	genome.wustl.edu	37	14	89878374	89878374	+	Silent	SNP	C	C	T	rs183597395	by1000genomes	TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001085471.1	-1	reviewed	p.P149	0.877	61	0%	96	31.2%	-	-	-	-	-	"HMMPfam_Fork_head,HMMSmart_SM00339,superfamily_""Winged helix"" DNA-binding domain"
OR4N4	283694	genome.wustl.edu	37	15	22382966	22382966	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001005241.1	+1	provisional	p.R165H	0.058	162	0.6%	191	30.4%	-	-	benign(0.002)	tolerated(0.28)	neutral(0.032)	HMMPfam_7tm_1,superfamily_SSF81321
MEIS2	4212	genome.wustl.edu	37	15	37390260	37390260	+	Silent	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_170675.2	-1	reviewed	p.Y51	1.000	25	0%	62	30.6%	-	-	-	-	-	NULL
MYO9A	4649	genome.wustl.edu	37	15	72338362	72338362	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_006901.2	-1	validated	p.S181R	1.000	76	0%	89	24.7%	-	-	probably_damaging(0.971)	deleterious(0)	deleterious(0.857)	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases
NTHL1	4913	genome.wustl.edu	37	16	2097781	2097781	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_002528.5	-1	reviewed	p.L23P	0.569	5	0.000	9	0.556	-	-	benign(0.007)	tolerated(0.14)	neutral(0.249)	NULL
RBFOX1	54715	genome.wustl.edu	37	16	7568201	7568201	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_145891.2	+1	reviewed	p.S47L	1.000	92	0%	89	28.1%	-	-	probably_damaging(0.958)	deleterious(0)	deleterious(0.846)	NULL
ZP2	7783	genome.wustl.edu	37	16	21213582	21213582	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_003460.1	-1	reviewed	p.F377S	0.997	96	0%	113	19.5%	-	-	probably_damaging(0.997)	tolerated(0.12)	deleterious(0.727)	HMMPfam_Zona_pellucida,HMMSmart_SM00241
CLEC3A	10143	genome.wustl.edu	37	16	78064698	78064698	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_005752.3	+1	validated	p.S185I	0.438	64	0%	39	38.5%	-	-	benign(0.281)	tolerated(0.17)	neutral(0.145)	HMMPfam_Lectin_C,HMMSmart_CLECT,superfamily_C-type_lectin_fold,PatternScan_C_TYPE_LECTIN_1
KIAA0753	9851	genome.wustl.edu	37	17	6538422	6538424	+	In_Frame_Del	DEL	ATA	ATA	-	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	ATA	ATA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_014804.2	-1	validated	p.MGPG1in_frame_delGTR	0.979:0.908	-	-	-	-	-	-	-	-	-	NULL
DNAH9	1770	genome.wustl.edu	37	17	11666855	11666855	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001372.3	+1	reviewed	p.C2365Y	1.000	86	0%	84	34.5%	-	-	possibly_damaging(0.92)	tolerated(0.44)	neutral(0.384)	NULL
KRT17P1	147228	genome.wustl.edu	37	17	16748911	16748913	+	In_Frame_Del	DEL	GCT	GCT	-	rs59754524		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	GCT	GCT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	ENST00000399211	-1	known	p.S73in_frame_del	0.992:0.992:0.992	-	-	-	-	-	-	-	-	-	NULL
RHOT1	55288	genome.wustl.edu	37	17	30538195	30538195	+	Silent	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001033568.1	+1	validated	p.N632	1.000	115	0%	81	34.6%	-	-	-	-	-	NULL
PSMD11	5717	genome.wustl.edu	37	17	30804557	30804557	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_002815.2	+1	reviewed	p.V290M	1.000	201	0%	192	35.4%	-	-	possibly_damaging(0.515)	deleterious(0)	deleterious(0.618)	HMMPfam_PCI,HMMSmart_SM00753,superfamily_TPR-like
LOXHD1	125336	genome.wustl.edu	37	18	44184141	44184141	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	ENST00000441551	-1	known	p.P251L	1.000	165	0%	75	34.7%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_PLAT,HMMSmart_SM00308,superfamily_Lipase/lipooxygenase domain (PLAT/LH2 domain)
ENSG00000207357	0	genome.wustl.edu	37	19	1021621	1021621	+	RNA	SNP	T	T	C	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	ENST00000384627	+1	known	NULL	1.000	35	0%	711	37.7%	-	-	-	-	-	-
MLLT1	4298	genome.wustl.edu	37	19	6230656	6230656	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_005934.3	-1	validated	p.N115K	1.000	81	0%	109	34.9%	-	-	probably_damaging(0.979)	deleterious(0.04)	deleterious(0.771)	NULL
ZNF558	148156	genome.wustl.edu	37	19	8922212	8922212	+	Silent	SNP	T	T	C	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_144693.1	-1	provisional	p.K318	0.954	123	0%	91	35.2%	-	-	-	-	-	superfamily_C2H2 and C2HC zinc fingers
LOC55908	55908	genome.wustl.edu	37	19	11350951	11350951	+	Silent	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_018687.6	+1	validated	p.Y199	0.000	22	0%	30	33.3%	-	-	-	-	-	NULL
ZNF536	9745	genome.wustl.edu	37	19	30934973	30934973	+	Silent	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_014717.1	+1	provisional	p.A168	1.000	13	0%	18	33.3%	-	-	-	-	-	HMMPfam_zf-C2H2,HMMSmart_ZnF_C2H2,superfamily_SSF57667
PPP2R1A	5518	genome.wustl.edu	37	19	52714556	52714556	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_014225.5	+1	reviewed	p.R105Q	1.000	35	0%	32	53.1%	-	-	probably_damaging(1)	deleterious(0.02)	deleterious(0.883)	HMMPfam_HEAT,superfamily_ARM repeat
SIGLEC1	6614	genome.wustl.edu	37	20	3677408	3677408	+	Silent	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_023068.3	-1	reviewed	p.L836	1.000	22	0%	51	29.4%	-	-	-	-	-	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin
ADRM1	11047	genome.wustl.edu	37	20	60881718	60881718	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_007002.2	+1	reviewed	p.Q157K	1.000	13	0%	48	25%	-	-	unknown(0)	deleterious(0.01)	-	HMMPfam_ARM_1
ENSG00000210082	0	genome.wustl.edu	37	MT	3107	3107	+	RNA	DEL	A	A	-	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	ENST00000387347	+1	known	NULL	NULL	-	-	-	-	-	-	-	-	-	-
RAB41	347517	genome.wustl.edu	37	X	69502149	69502149	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001032726.2	+1	reviewed	p.S28P	0.052	175	0%	239	19.7%	-	-	benign(0.001)	tolerated(0.59)	neutral(0.004)	superfamily_P-loop containing nucleoside triphosphate hydrolases
BTK	695	genome.wustl.edu	37	X	100624986	100624986	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_000061.2	-1	reviewed	p.V131I	0.991	141	0%	214	29%	-	-	unknown(0)	tolerated(0.26)	-	HMMPfam_PH,HMMSmart_PH,superfamily_SSF50729
COL4A5	1287	genome.wustl.edu	37	X	107858225	107858225	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_033380.1	+1	reviewed	p.P827Q	1.000	75	0%	65	21.5%	-	-	unknown(0)	tolerated(0.59)	-	HMMPfam_Collagen
PHF6	84295	genome.wustl.edu	37	X	133547669	133547669	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_001015877.1	+1	reviewed	p.E189D	1.000	82	0%	124	28.2%	-	-	benign(0)	tolerated(0.25)	neutral(0.037)	NULL
GABRA3	2556	genome.wustl.edu	37	X	151514097	151514097	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-D1-A102-01A-11D-A10M-09	TCGA-D1-A102-10A-01D-A10M-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	ba558e51-cbb7-4aa6-90ea-940b826db346	2acdae75-8634-4873-a3a9-415cac0711da	NM_000808.3	-1	reviewed	p.R73H	1.000	123	0%	135	54.1%	-	-	probably_damaging(1)	tolerated(0.05)	deleterious(0.845)	HMMPfam_Neur_chan_LBD,superfamily_Neur_chan_LBD
