Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
BCL6B	0	genome.wustl.edu	37	17	6928019	6928020	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	6928019	6928020	-	CAG	INS	BCL6B	NM_181844.3	human	genbank	58_37c	+1	validated	in_frame_ins	c.701_702	p.238in_frame_insS	0.939:0.528	NULL	HMMSmart_SM00225,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_POZ domain,HMMPfam_BTB,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
BSN	0	genome.wustl.edu	37	3	49694289	49694289	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	3	49694289	49694289	C	T	SNP	BSN	NM_003458.3	human	genbank	58_37c	+1	reviewed	missense	c.7300	p.R2434C	0.998	NULL	HMMPfam_zf-piccolo,superfamily_FYVE_PHD_ZnF	-	no_errors
C1QTNF5	0	genome.wustl.edu	37	11	119210189	119210190	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	11	119210189	119210190	-	C	INS	C1QTNF5	NM_015645.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.584_583	p.A195fs	1.000:0.976	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like	HMMPfam_C1q,HMMSmart_C1Q,HMMPfam_Collagen,superfamily_TNF_like	-	no_errors
CACNA1C	0	genome.wustl.edu	37	12	2788732	2788732	+	Silent	SNP	C	C	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	12	2788732	2788732	C	T	SNP	CACNA1C	NM_199460.2	human	genbank	58_37c	+1	reviewed	silent	c.5358	p.G1786	0.819	NULL	HMMPfam_Ion_trans,HMMPfam_Ca_chan_IQ,superfamily_Voltage-gated potassium channels	-	no_errors
CIT	0	genome.wustl.edu	37	12	120156107	120156107	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	12	120156107	120156107	C	T	SNP	CIT	NM_007174.1	human	genbank	58_37c	-1	validated	missense	c.3985	p.A1329T	1.000	NULL	HMMSmart_SM00133,HMMPfam_CNH,HMMSmart_SM00036,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_CPSASE_2,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
CUL4A	0	genome.wustl.edu	37	13	113897392	113897392	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	13	113897392	113897392	G	A	SNP	CUL4A	NM_001008895.1	human	genbank	58_37c	+1	validated	silent	c.1146	p.K382	1.000	HMMPfam_Cullin,superfamily_Cullin repeat	"HMMPfam_Cullin,PatternScan_CULLIN_1,HMMSmart_SM00182,superfamily_Cullin homology domain,superfamily_Cullin repeat,HMMPfam_Cullin_Nedd8,superfamily_""Winged helix"" DNA-binding domain"	-	no_errors
DENND2D	0	genome.wustl.edu	37	1	111742312	111742312	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	1	111742312	111742312	A	G	SNP	DENND2D	NM_024901.3	human	genbank	58_37c	-1	provisional	missense	c.176	p.V59A	1.000	HMMPfam_uDENN,HMMSmart_SM00800	HMMPfam_DENN,HMMSmart_SM00799,HMMPfam_dDENN,HMMSmart_SM00801,HMMPfam_uDENN,HMMSmart_SM00800	-	no_errors
DIP2A	0	genome.wustl.edu	37	21	47965866	47965866	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	21	47965866	47965866	A	T	SNP	DIP2A	NM_015151.3	human	genbank	58_37c	+1	reviewed	missense	c.2386	p.I796F	0.980	superfamily_Acetyl-CoA synthetase-like	HMMPfam_AMP-binding,HMMPfam_DMAP_binding,superfamily_Acetyl-CoA synthetase-like	-	no_errors
DNER	0	genome.wustl.edu	37	2	230312186	230312186	+	Silent	SNP	G	G	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	2	230312186	230312186	G	T	SNP	DNER	NM_139072.3	human	genbank	58_37c	-1	validated	silent	c.1332	p.T444	0.893	HMMPfam_EGF,HMMSmart_EGF,superfamily_SSF57196	PatternScan_ASX_HYDROXYL,HMMSmart_EGF_CA,HMMSmart_FOLN,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196	-	no_errors
DSCAM	0	genome.wustl.edu	37	21	41741044	41741044	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	21	41741044	41741044	C	T	SNP	DSCAM	NM_001389.3	human	genbank	58_37c	-1	validated	missense	c.637	p.A213T	1.000	HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00406,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
EIF4ENIF1	0	genome.wustl.edu	37	22	31867837	31867838	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	22	31867837	31867838	-	T	INS	EIF4ENIF1	NM_019843.3	human	genbank	58_37c	-1	reviewed	frame_shift_ins	c.163_162	p.Y54fs	1.000:1.000	HMMPfam_EIF4E-T	HMMPfam_EIF4E-T	-	no_errors
ENSG00000184730	0	genome.wustl.edu	37	16	28507445	28507445	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	16	28507445	28507445	G	C	SNP	ENSG00000184730	ENST00000431282	human	ensembl	58_37c	+1	known	missense	c.1056	p.E352D	0.310	NULL	NULL	-	no_errors
ENSG00000198786	0	genome.wustl.edu	37	MT	13490	13490	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	MT	13490	13490	T	C	SNP	ENSG00000198786	ENST00000361567	human	ensembl	58_37c	+1	known	missense	c.1154	p.F385S	NULL	HMMPfam_Oxidored_q1	HMMPfam_Oxidored_q1_N,HMMPfam_Oxidored_q1,HMMPfam_NADH5_C	-	mismatch_between_exon_seq_and_reference
ENSG00000224343	0	genome.wustl.edu	37	6	160132723	160132723	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	6	160132723	160132723	T	C	SNP	ENSG00000224343	ENST00000442642	human	ensembl	58_37c	-1	known	missense	c.284	p.Y95C	0.000	NULL	NULL	-	no_start_codon
ENSG00000237897	0	genome.wustl.edu	37	1	106433739	106433739	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	1	106433739	106433739	G	A	SNP	ENSG00000237897	ENST00000433990	human	ensembl	58_37c	-1	known	splice_site	c.NULL	NULL	0.875	-	-	-	no_coding_region:pseudogene
ETV3L	0	genome.wustl.edu	37	1	157069272	157069272	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	1	157069272	157069272	C	T	SNP	ETV3L	NM_001004341.2	human	genbank	58_37c	-1	validated	missense	c.44	p.G15D	0.004	NULL	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,superfamily_SSF46785	-	no_errors
FAM138B	0	genome.wustl.edu	37	2	114336277	114336277	+	RNA	SNP	C	C	A	rs148851148	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	2	114336277	114336277	C	A	SNP	FAM138B	NR_026821.1	human	genbank	58_37c	+1	validated	rna	NULL	NULL	0.004	-	-	-	no_errors
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	In_Frame_Ins	INS	-	-	GCA	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	9	141107536	141107537	-	GCA	INS	FAM157B	NM_001145249.1	human	genbank	58_37c	+1	inferred	in_frame_ins	c.218_219	p.77in_frame_insQ	0.033:0.036	NULL	NULL	-	no_errors
FAM174B	0	genome.wustl.edu	37	15	93198679	93198684	+	In_Frame_Del	DEL	TGGAGC	TGGAGC	-	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	TGGAGC	TGGAGC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	15	93198679	93198684	TGGAGC	-	DEL	FAM174B	NM_207446.2	human	genbank	58_37c	-1	validated	in_frame_del	c.211_206	p.SS69in_frame_del	0.997:0.996:0.995:0.994:0.994:0.995	HMMPfam_DUF1180	HMMPfam_DUF1180	-	no_errors
FAM19A5	0	genome.wustl.edu	37	22	49042480	49042480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	22	49042480	49042480	G	A	SNP	FAM19A5	NM_001082967.1	human	genbank	58_37c	+1	validated	missense	c.184	p.A62T	1.000	NULL	NULL	-	no_errors
FBXO7	0	genome.wustl.edu	37	22	32889121	32889121	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	22	32889121	32889121	G	C	SNP	FBXO7	NM_012179.3	human	genbank	58_37c	+1	reviewed	missense	c.997	p.V333L	0.009	HMMPfam_F-box,superfamily_SSF81383	HMMPfam_F-box,HMMSmart_FBOX,superfamily_SSF81383	-	no_errors
GIGYF2	0	genome.wustl.edu	37	2	233712227	233712229	+	In_Frame_Del	DEL	ACA	ACA	-	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	ACA	ACA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	2	233712227	233712229	ACA	-	DEL	GIGYF2	NM_001103147.1	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3693_3695	p.Q1235in_frame_del	0.057:0.094:0.124	NULL	HMMPfam_GYF,HMMSmart_GYF,superfamily_GYF	-	no_errors
KCNJ12	0	genome.wustl.edu	37	17	21319592	21319592	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	21319592	21319592	G	A	SNP	KCNJ12	NM_021012.4	human	genbank	58_37c	+1	validated	missense	c.938	p.R313H	1.000	HMMPfam_IRK,superfamily_Ig_E-set	HMMPfam_IRK,HMMPfam_IRK_N,superfamily_Ig_E-set,superfamily_SSF81324	-	no_errors
KIAA1045	0	genome.wustl.edu	37	9	34977197	34977197	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	9	34977197	34977197	T	C	SNP	KIAA1045	NM_015297.1	human	genbank	58_37c	+1	validated	missense	c.967	p.W323R	1.000	NULL	PatternScan_ZF_PHD_1	-	no_errors
KRTAP9-9	0	genome.wustl.edu	37	17	39411670	39411671	+	In_Frame_Ins	INS	-	-	ACCTGCTGCAGGACC	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	39411670	39411671	-	ACCTGCTGCAGGACC	INS	KRTAP9-9	NM_030975.2	human	genbank	58_37c	+1	reviewed	in_frame_ins	c.33_34	p.15in_frame_insTTCCR	0.053:0.940	HMMPfam_Keratin_B2	HMMPfam_Keratin_B2	-	no_errors
LEUTX	0	genome.wustl.edu	37	19	40275187	40275187	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	19	40275187	40275187	C	T	SNP	LEUTX	ENST00000420426	human	ensembl	58_37c	+1	known	missense	c.106	p.R36W	0.001	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like	HMMPfam_Homeobox,HMMSmart_SM00389,superfamily_Homeodomain-like,PatternScan_HOMEOBOX_1	-	no_start_codon
LOC100131851	0	genome.wustl.edu	37	7	39873126	39873127	+	In_Frame_Ins	INS	-	-	GCG	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	7	39873126	39873127	-	GCG	INS	LOC100131851	XM_001717865.2	human	genbank	58_37c	+1	model	in_frame_ins	c.371_372	p.125in_frame_ins	0.002:0.000	NULL	NULL	-	no_errors
LOC283685	0	genome.wustl.edu	37	15	23686010	23686011	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	15	23686010	23686011	-	CTC	INS	LOC283685	XM_002343322.1	human	genbank	58_37c	-1	model	in_frame_ins	c.1438_1437	p.479in_frame_insE	0.002:0.005	NULL	NULL	-	no_errors
MAP2K3	0	genome.wustl.edu	37	17	21206523	21206523	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	21206523	21206523	G	A	SNP	MAP2K3	NM_145109.2	human	genbank	58_37c	+1	reviewed	missense	c.545	p.S182N	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
MEF2A	0	genome.wustl.edu	37	15	100252710	100252715	+	In_Frame_Del	DEL	CAGCAG	CAGCAG	-	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	CAGCAG	CAGCAG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	15	100252710	100252715	CAGCAG	-	DEL	MEF2A	NM_005587.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1234_1239	p.QQ415in_frame_del	1.000:1.000:1.000:1.000:1.000:1.000	NULL	HMMPfam_SRF-TF,HMMSmart_MADS,PatternScan_MADS_BOX_1,superfamily_TF_MADSbox	-	no_errors
MIR550-1	0	genome.wustl.edu	37	7	30329454	30329456	+	RNA	DEL	TGT	TGT	-	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	TGT	TGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	7	30329454	30329456	TGT	-	DEL	MIR550-1	ENST00000385037	human	ensembl	58_37c	+1	known	rna	NULL	NULL	0.000:0.002:0.010	-	-	-	no_errors
MRPL27	0	genome.wustl.edu	37	17	48447871	48447871	+	Silent	SNP	G	G	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	48447871	48447871	G	A	SNP	MRPL27	NM_016504.2	human	genbank	58_37c	-1	reviewed	silent	c.117	p.S39	0.964	HMMPfam_Ribosomal_L27	HMMPfam_Ribosomal_L27,superfamily_Ribosomal L27 protein	-	no_errors
MUC4	0	genome.wustl.edu	37	3	195507529	195507529	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	3	195507529	195507529	A	G	SNP	MUC4	NM_018406.5	human	genbank	58_37c	-1	reviewed	missense	c.10538	p.V3513A	0.000	NULL	HMMPfam_VWD,HMMSmart_SM00216,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_AMOP,HMMSmart_SM00723,PatternScan_SUGAR_TRANSPORT_2,HMMSmart_SM00181,PatternScan_EGF_1,superfamily_EGF/Laminin	-	no_errors
NBPF1	0	genome.wustl.edu	37	1	16902844	16902844	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	1	16902844	16902844	G	T	SNP	NBPF1	NM_017940.3	human	genbank	58_37c	-1	predicted	missense	c.2037	p.D679E	0.001	NULL	HMMPfam_DUF1220	-	no_errors
NCOA3	0	genome.wustl.edu	37	20	46279834	46279836	+	In_Frame_Del	DEL	CAA	CAA	-	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	CAA	CAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	20	46279834	46279836	CAA	-	DEL	NCOA3	NM_181659.2	human	genbank	58_37c	+1	reviewed	in_frame_del	c.3760_3762	p.Q1257in_frame_del	0.527:0.539:0.525	NULL	HMMSmart_SM00091,HMMPfam_HLH,HMMSmart_SM00353,superfamily_Nuclear receptor coactivator interlocking domain,HMMPfam_DUF1518,superfamily_HLH helix-loop-helix DNA-binding domain,HMMPfam_PAS,HMMPfam_Nuc_rec_co-act,HMMPfam_SRC-1,superfamily_PYP-like sensor domain (PAS domain)	-	no_errors
NCOR2	0	genome.wustl.edu	37	12	124887058	124887059	+	In_Frame_Ins	INS	-	-	GCT	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	12	124887058	124887059	-	GCT	INS	NCOR2	NM_006312.3	human	genbank	58_37c	-1	validated	in_frame_ins	c.1532_1531	p.511in_frame_insQ	0.999:1.000	NULL	HMMSmart_SM00717,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
NUDT11	0	genome.wustl.edu	37	X	51239296	51239309	+	Frame_Shift_Del	DEL	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC	-	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	TCCTCGAGGCAGCC	TCCTCGAGGCAGCC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	X	51239296	51239309	TCCTCGAGGCAGCC	-	DEL	NUDT11	ENST00000375992	human	ensembl	58_37c	-1	known	frame_shift_del	c.1	p.M1fs	0.928	NULL	HMMPfam_NUDIX,superfamily_NUDIX_hydrolase,PatternScan_NUDIX	-	no_errors
P2RY10	0	genome.wustl.edu	37	X	78216289	78216289	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	X	78216289	78216289	T	A	SNP	P2RY10	NM_014499.2	human	genbank	58_37c	+1	reviewed	missense	c.272	p.I91N	1.000	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
PEG3	0	genome.wustl.edu	37	19	57328905	57328905	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	19	57328905	57328905	C	T	SNP	PEG3	NM_006210.2	human	genbank	58_37c	-1	reviewed	missense	c.905	p.R302Q	0.770	NULL	HMMPfam_SCAN,HMMSmart_SM00431,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PHF16	0	genome.wustl.edu	37	X	46913561	46913561	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	X	46913561	46913561	G	A	SNP	PHF16	NM_001077445.1	human	genbank	58_37c	+1	reviewed	missense	c.974	p.C325Y	1.000	HMMSmart_PHD	HMMSmart_PHD,superfamily_FYVE_PHD_ZnF,HMMPfam_EPL1,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
POM121L10P	0	genome.wustl.edu	37	22	25043098	25043098	+	RNA	SNP	G	G	C	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	22	25043098	25043098	G	C	SNP	POM121L10P	NR_024593.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000	-	-	-	pseudogene
QSER1	0	genome.wustl.edu	37	11	32954399	32954399	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	11	32954399	32954399	C	T	SNP	QSER1	NM_001076786.1	human	genbank	58_37c	+1	provisional	missense	c.1208	p.S403F	0.976	NULL	NULL	-	no_errors
RAI1	0	genome.wustl.edu	37	17	17697099	17697100	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	GC	GC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	17	17697099	17697100	GC	-	DEL	RAI1	NM_030665.3	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.837_838	p.Q280fs	0.891:0.907	NULL	HMMSmart_SM00249	-	no_errors
SH3KBP1	0	genome.wustl.edu	37	X	19560229	19560229	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	X	19560229	19560229	G	A	SNP	SH3KBP1	NM_031892.2	human	genbank	58_37c	-1	reviewed	missense	c.1706	p.A569V	0.002	NULL	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	-	no_errors
SMC3	0	genome.wustl.edu	37	10	112361451	112361451	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	10	112361451	112361451	A	G	SNP	SMC3	NM_005445.3	human	genbank	58_37c	+1	reviewed	missense	c.2701	p.M901V	1.000	HMMPfam_SMC_N,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_SMC_N,HMMPfam_SMC_hinge,superfamily_Smc hinge domain,PatternScan_ABC_TRANSPORTER_1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_BAG domain	-	no_errors
TPM3	0	genome.wustl.edu	37	1	154163748	154163748	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	1	154163748	154163748	C	A	SNP	TPM3	NM_152263.2	human	genbank	58_37c	-1	reviewed	missense	c.157	p.G53W	1.000	HMMPfam_Tropomyosin	HMMPfam_Tropomyosin,PatternScan_TROPOMYOSIN	-	no_errors
ZC3H4	0	genome.wustl.edu	37	19	47575224	47575235	+	In_Frame_Del	DEL	GCATGTCTGCGT	GCATGTCTGCGT	-	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	GCATGTCTGCGT	GCATGTCTGCGT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	19	47575224	47575235	GCATGTCTGCGT	-	DEL	ZC3H4	NM_015168.1	human	genbank	58_37c	-1	validated	in_frame_del	c.1957_1946	p.HADM649in_frame_del	1.000:1.000:1.000:1.000:0.996:0.997:0.985:0.016:0.952:0.996:0.998:1.000	NULL	HMMPfam_zf-CCCH,HMMSmart_ZnF_C3H1	-	no_errors
ZNF714	0	genome.wustl.edu	37	19	21299748	21299748	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-D8-A1XR-01A-11D-A14K-09	TCGA-D8-A1XR-10A-01D-A14K-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	5913c8ff-26ce-4f26-909e-3ed292d3c538	596c1603-ee4c-4f54-9641-27a67edf30a4	19	21299748	21299748	T	A	SNP	ZNF714	ENST00000291770	human	ensembl	58_37c	+1	known	missense	c.278	p.V93D	0.000	NULL	HMMSmart_SM00349,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
