Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
AKT1	207	genome.wustl.edu	37	14	105246551	105246551	+	Missense_Mutation	SNP	C	C	T	rs121434592	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	14	105246551	105246551	C	T	SNP	AKT1	NM_001014431.1	human	genbank	58_37c	-1	reviewed	missense	c.49	p.E17K	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00133,HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,HMMPfam_Pkinase_C,superfamily_PH domain-like	-	no_errors
ANKRD30A	91074	genome.wustl.edu	37	10	37486216	37486216	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	10	37486216	37486216	C	G	SNP	ANKRD30A	NM_052997.2	human	genbank	58_37c	+1	validated	silent	c.2454	p.P818	0.011	NULL	PatternScan_ASP_PROTEASE,HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
CHRND	1144	genome.wustl.edu	37	2	233399890	233399890	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	2	233399890	233399890	G	-	DEL	CHRND	NM_000751.1	human	genbank	58_37c	+1	reviewed	frame_shift_del	c.1422	p.F475fs	0.991	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
DNAH12	201625	genome.wustl.edu	37	3	57414077	57414077	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	3	57414077	57414077	T	C	SNP	DNAH12	NM_178504.4	human	genbank	58_37c	-1	validated	missense	c.5282	p.Q1761R	0.012	NULL	HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N2,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DNAJB2	3300	genome.wustl.edu	37	2	220144582	220144582	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	2	220144582	220144582	C	T	SNP	DNAJB2	NM_006736.5	human	genbank	58_37c	+1	validated	silent	c.27	p.D9	0.984	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain	HMMPfam_DnaJ,HMMSmart_SM00271,superfamily_Chaperone J-domain,HMMPfam_UIM,HMMSmart_SM00726,PatternScan_DNAJ_1	-	no_errors
GABRA6	2559	genome.wustl.edu	37	5	161116743	161116743	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	5	161116743	161116743	A	C	SNP	GABRA6	NM_000811.2	human	genbank	58_37c	+1	reviewed	missense	c.631	p.I211L	1.000	HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like	HMMPfam_Neur_chan_memb,superfamily_Neurotransmitter-gated ion-channel transmembrane pore,HMMPfam_Neur_chan_LBD,superfamily_Nicotinic receptor ligand binding domain-like,PatternScan_NEUROTR_ION_CHANNEL	-	no_errors
GRM3	2913	genome.wustl.edu	37	7	86493622	86493622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	7	86493622	86493622	C	T	SNP	GRM3	NM_000840.2	human	genbank	58_37c	+1	reviewed	missense	c.2591	p.T864M	1.000	NULL	HMMPfam_ANF_receptor,HMMPfam_NCD3G,HMMPfam_7tm_3,PatternScan_G_PROTEIN_RECEP_F3_1,PatternScan_G_PROTEIN_RECEP_F3_2,PatternScan_G_PROTEIN_RECEP_F3_3,superfamily_Periplasmic binding protein-like I	-	no_errors
HDDC2	51020	genome.wustl.edu	37	6	125598352	125598352	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	6	125598352	125598352	A	T	SNP	HDDC2	NM_016063.2	human	genbank	58_37c	-1	validated	missense	c.413	p.F138Y	0.997	HMMSmart_SM00471,HMMPfam_HD	HMMSmart_SM00471,HMMPfam_HD	-	no_errors
IGFL3	388555	genome.wustl.edu	37	19	46627331	46627331	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	19	46627331	46627331	G	A	SNP	IGFL3	NM_207393.1	human	genbank	58_37c	-1	validated	silent	c.162	p.C54	0.022	NULL	NULL	-	no_errors
KLHL1	57626	genome.wustl.edu	37	13	70281929	70281929	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	13	70281929	70281929	C	T	SNP	KLHL1	NM_020866.2	human	genbank	58_37c	-1	validated	splice_site	c.2016-1	e10-1	1.000	-	-	-	no_errors
LOC100288755	0	genome.wustl.edu	37	21	9866073	9866073	+	RNA	SNP	C	C	G	rs6841165	byFrequency	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	21	9866073	9866073	C	G	SNP	LOC100288755	XR_078568.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.002	-	-	-	pseudogene
LPO	4025	genome.wustl.edu	37	17	56332273	56332273	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	17	56332273	56332273	C	T	SNP	LPO	NM_006151.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1207	p.Q403*	0.377	HMMPfam_An_peroxidase,superfamily_Peroxidase_super	HMMPfam_An_peroxidase,superfamily_Peroxidase_super,PatternScan_PEROXIDASE_1,PatternScan_PEROXIDASE_2	-	no_errors
NDST1	3340	genome.wustl.edu	37	5	149915315	149915315	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	5	149915315	149915315	C	T	SNP	NDST1	NM_001543.4	human	genbank	58_37c	+1	validated	silent	c.1305	p.G435	0.923	NULL	HMMPfam_Sulfotransfer_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
RPH3A	22895	genome.wustl.edu	37	12	113307580	113307580	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	12	113307580	113307580	G	A	SNP	RPH3A	NM_001143854.1	human	genbank	58_37c	+1	validated	silent	c.627	p.R209	1.000	HMMPfam_RPH3A_effector	HMMPfam_C2,HMMSmart_SM00239,HMMPfam_RPH3A_effector,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),superfamily_FYVE/PHD zinc finger	-	no_errors
RXFP3	51289	genome.wustl.edu	37	5	33937028	33937028	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	5	33937028	33937028	G	A	SNP	RXFP3	NM_016568.3	human	genbank	58_37c	+1	validated	silent	c.183	p.P61	0.875	NULL	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
RYR3	6263	genome.wustl.edu	37	15	33923486	33923486	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	15	33923486	33923486	G	T	SNP	RYR3	NM_001036.3	human	genbank	58_37c	+1	validated	silent	c.2859	p.L953	0.982	NULL	HMMPfam_RYDR_ITPR,HMMPfam_RyR,HMMPfam_MIR,superfamily_MIR domain (Pfam 02815),HMMPfam_SPRY,HMMPfam_Ion_trans,HMMPfam_RR_TM4-6,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_SM00472,HMMPfam_efhand,HMMSmart_SM00449,superfamily_EF-hand	-	no_errors
SHKBP1	92799	genome.wustl.edu	37	19	41092756	41092756	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	19	41092756	41092756	G	T	SNP	SHKBP1	NM_138392.3	human	genbank	58_37c	+1	validated	missense	c.1242	p.E414D	1.000	superfamily_WD40 repeat-like	HMMSmart_SM00225,HMMSmart_SM00320,HMMPfam_K_tetra,superfamily_WD40 repeat-like,superfamily_POZ domain,PatternScan_WD_REPEATS_1	-	no_errors
SLC35A2	7355	genome.wustl.edu	37	X	48762371	48762371	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	X	48762371	48762371	C	A	SNP	SLC35A2	NM_005660.1	human	genbank	58_37c	-1	provisional	missense	c.815	p.W272L	1.000	HMMPfam_Nuc_sug_transp	HMMPfam_Nuc_sug_transp,superfamily_Multidrug resistance efflux transporter EmrE	-	no_errors
SPATA21	374955	genome.wustl.edu	37	1	16748588	16748588	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	1	16748588	16748588	C	T	SNP	SPATA21	ENST00000466212	human	ensembl	58_37c	-1	known	5_prime_untranslated_region	c.-16748588	NULL	0.000	-	-	-	no_coding_region
SYP	6855	genome.wustl.edu	37	X	49050648	49050648	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	X	49050648	49050648	C	T	SNP	SYP	NM_003179.2	human	genbank	58_37c	-1	reviewed	missense	c.398	p.R133Q	1.000	HMMPfam_MARVEL	PatternScan_SYNAPTOP,HMMPfam_MARVEL	-	no_errors
TECTA	7007	genome.wustl.edu	37	11	121000388	121000388	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	11	121000388	121000388	G	A	SNP	TECTA	NM_005422.2	human	genbank	58_37c	+1	reviewed	silent	c.2409	p.S803	0.975	HMMPfam_VWD,HMMSmart_SM00216	PatternScan_FA58C_2,HMMPfam_Zona_pellucida,HMMSmart_SM00241,HMMPfam_VWD,HMMSmart_SM00216,superfamily_Serine proterase inhibitors,HMMPfam_NIDO,HMMSmart_SM00539,HMMSmart_SM00181,HMMSmart_SM00215,PatternScan_EGF_2,HMMPfam_C8,PatternScan_ZP_1,HMMPfam_TIL,superfamily_EGF/Laminin	-	no_errors
XIRP2	129446	genome.wustl.edu	37	2	168115717	168115717	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E2-A15I-01A-21D-A135-09	TCGA-E2-A15I-10A-01D-A135-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	9bec02b4-7cf0-4797-b1ac-253ef78a34af	bf856604-4326-4145-bc3c-137098338f61	2	168115717	168115717	A	G	SNP	XIRP2	NM_001079810.2	human	genbank	58_37c	+1	validated	silent	c.2661	p.T887	0.000	NULL	HMMPfam_LIM,HMMSmart_LIM,PatternScan_LIM_DOMAIN_1,superfamily_SSF57716	-	no_errors
