Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ACD	0	genome.wustl.edu	37	16	67694153	67694153	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	16	67694153	67694153	G	C	SNP	ACD	NM_001082486.1	human	genbank	58_37c	-1	reviewed	missense	c.229	p.P77A	0.000	NULL	NULL	-	no_errors
ACSM5	0	genome.wustl.edu	37	16	20422836	20422836	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	16	20422836	20422836	C	A	SNP	ACSM5	NM_017888.2	human	genbank	58_37c	+1	validated	silent	c.30	p.L10	0.000	NULL	HMMPfam_AMP-binding,PatternScan_AMP_BINDING,superfamily_Acetyl-CoA synthetase-like	-	no_errors
ACVRL1	0	genome.wustl.edu	37	12	52307765	52307765	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	52307765	52307765	T	G	SNP	ACVRL1	NM_000020.2	human	genbank	58_37c	+1	reviewed	missense	c.533	p.L178R	0.998	HMMPfam_TGF_beta_GS,HMMSmart_GS,superfamily_Kinase_like	HMMPfam_Activin_recp,HMMPfam_TGF_beta_GS,HMMSmart_GS,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_SSF57302	-	no_errors
AP1G1	0	genome.wustl.edu	37	16	71805063	71805063	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	16	71805063	71805063	G	T	SNP	AP1G1	NM_001030007.1	human	genbank	58_37c	-1	reviewed	missense	c.561	p.N187K	1.000	HMMPfam_Adaptin_N,superfamily_ARM repeat	HMMPfam_Adaptin_N,HMMPfam_Alpha_adaptinC2,HMMSmart_SM00809,superfamily_Clathrin adaptor appendage domain,superfamily_ARM repeat	-	no_errors
ARSB	0	genome.wustl.edu	37	5	78181490	78181490	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	78181490	78181490	C	A	SNP	ARSB	NM_000046.3	human	genbank	58_37c	-1	reviewed	missense	c.1059	p.W353C	1.000	HMMPfam_Sulfatase,superfamily_Alkaline_phosphatase_core	HMMPfam_Sulfatase,PatternScan_SULFATASE_2,PatternScan_SULFATASE_1,superfamily_Alkaline_phosphatase_core	-	no_errors
ASPN	0	genome.wustl.edu	37	9	95227293	95227293	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	9	95227293	95227293	A	T	SNP	ASPN	NM_017680.3	human	genbank	58_37c	-1	validated	missense	c.620	p.L207H	1.000	superfamily_SSF52058	HMMPfam_LRRNT,HMMSmart_LRRNT,HMMPfam_LRR_1,superfamily_SSF52058	-	no_errors
ATP11A	0	genome.wustl.edu	37	13	113481187	113481187	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	13	113481187	113481187	C	A	SNP	ATP11A	ENST00000418678	human	ensembl	58_37c	+1	known	nonsense	c.1127	p.S376*	0.093	superfamily_HAD-like	HMMPfam_E1-E2_ATPase,PatternScan_ATPASE_E1_E2,superfamily_HAD-like,superfamily_Calcium ATPase transduction domain A,superfamily_Metal cation-transporting ATPase ATP-binding domain N	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region
BDH1	0	genome.wustl.edu	37	3	197249622	197249622	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	197249622	197249622	C	T	SNP	BDH1	NM_004051.4	human	genbank	58_37c	-1	reviewed	missense	c.298	p.D100N	1.000	HMMPfam_adh_short,superfamily_NAD(P)-bd	HMMPfam_adh_short,PatternScan_ADH_SHORT,superfamily_NAD(P)-bd	-	no_errors
BTBD1	0	genome.wustl.edu	37	15	83686848	83686848	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	15	83686848	83686848	G	T	SNP	BTBD1	NM_025238.3	human	genbank	58_37c	-1	reviewed	missense	c.1420	p.Q474K	1.000	HMMPfam_PHR	HMMSmart_BTB,superfamily_BTB/POZ_fold,HMMPfam_BACK,HMMPfam_PHR,HMMPfam_BTB	-	no_errors
C1orf55	0	genome.wustl.edu	37	1	226175683	226175683	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	226175683	226175683	C	G	SNP	C1orf55	NM_152608.3	human	genbank	58_37c	-1	validated	missense	c.1048	p.D350H	0.042	NULL	NULL	-	no_errors
C6	0	genome.wustl.edu	37	5	41200004	41200004	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	41200004	41200004	C	A	SNP	C6	NM_000065.2	human	genbank	58_37c	-1	reviewed	missense	c.311	p.R104I	0.980	HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1	HMMPfam_Sushi,HMMSmart_CCP,HMMPfam_TSP_1,HMMSmart_TSP1,superfamily_TSP1,HMMPfam_MACPF,HMMSmart_MACPF,PatternScan_MAC_PERFORIN,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMSmart_KAZAL,HMMSmart_FIMAC,HMMPfam_Kazal_2,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_Complement_control_module	-	no_errors
CCNH	0	genome.wustl.edu	37	5	86695302	86695302	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	86695302	86695302	T	A	SNP	CCNH	NM_001239.2	human	genbank	58_37c	-1	reviewed	nonsense	c.781	p.K261*	1.000	superfamily_Cyclin_like	HMMSmart_CYCLIN,HMMPfam_Cyclin_N,PatternScan_CYCLINS,superfamily_Cyclin_like	-	no_errors
CDK11B	0	genome.wustl.edu	37	1	1573174	1573174	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	1573174	1573174	C	T	SNP	CDK11B	NM_033487.1	human	genbank	58_37c	-1	reviewed	missense	c.646	p.E216K	1.000	HMMSmart_S_TKc,superfamily_Kinase_like,HMMPfam_Pkinase	HMMSmart_S_TKc,PatternScan_PROTEIN_KINASE_ST,superfamily_Kinase_like,HMMPfam_Pkinase	-	no_errors
CLDN16	0	genome.wustl.edu	37	3	190105967	190105967	+	Nonsense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	190105967	190105967	C	G	SNP	CLDN16	NM_006580.3	human	genbank	58_37c	+1	reviewed	nonsense	c.59	p.S20*	0.006	NULL	HMMPfam_PMP22_Claudin,PatternScan_CLAUDIN	-	no_errors
CRTAC1	0	genome.wustl.edu	37	10	99655137	99655137	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	99655137	99655137	G	A	SNP	CRTAC1	NM_018058.4	human	genbank	58_37c	-1	validated	missense	c.1351	p.R451C	0.965	superfamily_Integrin alpha N-terminal domain	HMMSmart_SM00179,HMMPfam_UnbV_ASPIC,HMMPfam_EGF_CA,HMMPfam_FG-GAP,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_Integrin alpha N-terminal domain	-	no_errors
CSMD2	0	genome.wustl.edu	37	1	34100819	34100819	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	34100819	34100819	T	C	SNP	CSMD2	NM_052896.3	human	genbank	58_37c	-1	validated	missense	c.4961	p.D1654G	1.000	HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain	HMMPfam_Sushi,HMMSmart_SM00032,HMMPfam_CUB,HMMSmart_SM00042,superfamily_Spermadhesin CUB domain,PatternScan_GLYCOSYL_HYDROL_F10,PatternScan_IG_MHC,superfamily_Complement control module/SCR domain	-	no_errors
DAZAP1	0	genome.wustl.edu	37	19	1432662	1432662	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	1432662	1432662	C	T	SNP	DAZAP1	NM_018959.2	human	genbank	58_37c	+1	reviewed	nonsense	c.1021	p.Q341*	1.000	NULL	HMMPfam_RRM_1,HMMSmart_SM00360,superfamily_RNA-binding domain RBD	-	no_errors
DHRS13	0	genome.wustl.edu	37	17	27228573	27228573	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	17	27228573	27228573	C	G	SNP	DHRS13	NM_144683.3	human	genbank	58_37c	-1	validated	missense	c.308	p.R103P	1.000	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains	HMMPfam_adh_short,superfamily_NAD(P)-binding Rossmann-fold domains	-	no_errors
DNAH11	0	genome.wustl.edu	37	7	21920374	21920374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	21920374	21920374	C	T	SNP	DNAH11	NM_003777.3	human	genbank	58_37c	+1	reviewed	missense	c.12271	p.L4091F	0.984	HMMPfam_Dynein_heavy	PatternScan_THIOL_PROTEASE_HIS,HMMSmart_SM00382,HMMPfam_Dynein_heavy,HMMPfam_AAA_5,HMMPfam_DHC_N1,HMMPfam_DHC_N2,PatternScan_WD_REPEATS_1,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
DPYSL3	0	genome.wustl.edu	37	5	146785290	146785290	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	146785290	146785290	C	T	SNP	DPYSL3	NM_001387.2	human	genbank	58_37c	-1	validated	missense	c.694	p.E232K	1.000	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556	HMMPfam_Amidohydro_1,superfamily_Metalo_hydrolase,superfamily_SSF51556	-	no_errors
ENSG00000215407	0	genome.wustl.edu	37	15	20445995	20445996	+	Frame_Shift_Ins	INS	-	-	TGAGGGA	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	15	20445995	20445996	-	TGAGGGA	INS	ENSG00000215407	ENST00000400226	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1289_1288	p.N430fs	1.000:1.000	HMMSmart_SM00228,superfamily_PDZ domain-like	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_BRO1	-	no_errors
ENSG00000215407	0	genome.wustl.edu	37	15	20445998	20445999	+	Frame_Shift_Ins	INS	-	-	TTAAGAGGGAA	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	15	20445998	20445999	-	TTAAGAGGGAA	INS	ENSG00000215407	ENST00000400226	human	ensembl	58_37c	-1	known	frame_shift_ins	c.1286_1285	p.G429fs	1.000:1.000	HMMSmart_SM00228,superfamily_PDZ domain-like	HMMSmart_SM00228,superfamily_PDZ domain-like,HMMPfam_BRO1	-	no_errors
ENSG00000221138	0	genome.wustl.edu	37	15	33256196	33256197	+	RNA	DEL	TG	TG	-	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	TG	TG					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	15	33256196	33256197	TG	-	DEL	ENSG00000221138	ENST00000408211	human	ensembl	58_37c	-1	novel	rna	NULL	NULL	0.010:0.112	-	-	-	no_errors
ETV5	0	genome.wustl.edu	37	3	185774898	185774898	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	185774898	185774898	C	T	SNP	ETV5	NM_004454.2	human	genbank	58_37c	-1	validated	missense	c.1175	p.R392Q	1.000	HMMPfam_Ets,HMMSmart_ETS,superfamily_SSF46785	HMMPfam_Ets,HMMSmart_ETS,PatternScan_ETS_DOMAIN_1,PatternScan_ETS_DOMAIN_2,HMMPfam_ETS_PEA3_N,superfamily_SSF46785	-	no_errors
FAM49A	0	genome.wustl.edu	37	2	16740738	16740738	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	2	16740738	16740738	G	C	SNP	FAM49A	NM_030797.3	human	genbank	58_37c	-1	validated	missense	c.827	p.S276C	1.000	HMMPfam_DUF1394	HMMPfam_DUF1394	-	no_errors
FCRL5	0	genome.wustl.edu	37	1	157504397	157504397	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	157504397	157504397	C	A	SNP	FCRL5	ENST00000368189	human	ensembl	58_37c	-1	known	missense	c.1688	p.C563F	0.002	NULL	HMMSmart_IGc2,HMMSmart_IG,HMMPfam_ig,superfamily_SSF48726	-	no_errors
FGFR2	0	genome.wustl.edu	37	10	123247597	123247597	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	123247597	123247597	C	T	SNP	FGFR2	NM_022970.3	human	genbank	58_37c	-1	reviewed	missense	c.1897	p.V633I	1.000	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like	HMMPfam_Pkinase_Tyr,HMMSmart_TyrKc,HMMSmart_IGc2,PatternScan_PROTEIN_KINASE_TYR,superfamily_Kinase_like,HMMPfam_I-set,HMMPfam_ig,PatternScan_PROTEIN_KINASE_ATP,superfamily_SSF48726	-	no_errors
FREM3	0	genome.wustl.edu	37	4	144618543	144618543	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	144618543	144618543	C	T	SNP	FREM3	ENST00000329798	human	ensembl	58_37c	-1	known	missense	c.3286	p.E1096K	0.936	NULL	HMMPfam_Calx-beta,HMMSmart_SM00237	-	no_errors
GALNT9	0	genome.wustl.edu	37	12	132685719	132685719	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	132685719	132685719	T	G	SNP	GALNT9	ENST00000328957	human	ensembl	58_37c	-1	known	missense	c.1351	p.N451H	1.000	superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	HMMPfam_Ricin_B_lectin,HMMSmart_SM00458,HMMPfam_Glycos_transf_2,PatternScan_WW_DOMAIN_1,superfamily_Ricin B-like lectins,superfamily_Nucleotide-diphospho-sugar transferases	-	no_errors
GATA3	0	genome.wustl.edu	37	10	8111513	8111514	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	8111513	8111514	-	G	INS	GATA3	NM_001002295.1	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.1002_1003	p.D335fs	0.859:1.000	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	HMMPfam_GATA,HMMSmart_SM00401,PatternScan_GATA_ZN_FINGER_1,superfamily_Glucocorticoid receptor-like (DNA-binding domain)	-	no_errors
GPR112	0	genome.wustl.edu	37	X	135441470	135441471	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	135441470	135441471	-	T	INS	GPR112	NM_153834.3	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.7000_7001	p.A2336fs	0.952:0.996	NULL	HMMPfam_GPS,HMMSmart_GPS,HMMPfam_7tm_2,superfamily_ConA_like_lec_gl,PatternScan_G_PROTEIN_RECEP_F2_2	-	no_errors
GRIA3	0	genome.wustl.edu	37	X	122387187	122387187	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	122387187	122387187	T	C	SNP	GRIA3	ENST00000264357	human	ensembl	58_37c	+1	known	missense	c.302	p.I101T	1.000	HMMPfam_ANF_receptor,superfamily_Periplasmic binding protein-like I	HMMPfam_Lig_chan,HMMSmart_SM00079,HMMPfam_ANF_receptor,HMMPfam_Lig_chan-Glu_bd,superfamily_Periplasmic binding protein-like I,superfamily_Periplasmic binding protein-like II	-	no_errors
GRIN3A	0	genome.wustl.edu	37	9	104375772	104375772	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	9	104375772	104375772	G	A	SNP	GRIN3A	NM_133445.2	human	genbank	58_37c	-1	reviewed	silent	c.2652	p.T884	0.999	HMMPfam_Lig_chan,HMMSmart_PBPe,superfamily_SSF53850	HMMPfam_Lig_chan,HMMSmart_PBPe,HMMPfam_Lig_chan-Glu_bd,superfamily_SSF53822,superfamily_SSF53850	-	no_errors
HECW1	0	genome.wustl.edu	37	7	43546786	43546786	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	43546786	43546786	G	C	SNP	HECW1	NM_015052.3	human	genbank	58_37c	+1	validated	missense	c.3682	p.E1228Q	1.000	NULL	HMMPfam_C2,HMMSmart_C2,HMMPfam_HECT,HMMSmart_HECTc,superfamily_HECT,HMMPfam_WW,HMMSmart_WW,PatternScan_WW_DOMAIN_1,superfamily_WW_Rsp5_WWP,superfamily_C2_CaLB	-	no_errors
IFRD2	0	genome.wustl.edu	37	3	50326248	50326248	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	50326248	50326248	C	T	SNP	IFRD2	NM_006764.4	human	genbank	58_37c	-1	validated	missense	c.1198	p.V400M	1.000	HMMPfam_IFRD	HMMPfam_IFRD_C,HMMPfam_IFRD,superfamily_ARM repeat	-	no_errors
IGSF1	0	genome.wustl.edu	37	X	130410058	130410058	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	130410058	130410058	C	T	SNP	IGSF1	NM_001555.4	human	genbank	58_37c	-1	reviewed	missense	c.2773	p.A925T	0.953	HMMSmart_SM00408,HMMSmart_SM00409,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
IQGAP2	0	genome.wustl.edu	37	5	75757398	75757398	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	75757398	75757398	T	A	SNP	IQGAP2	NM_006633.2	human	genbank	58_37c	+1	validated	missense	c.50	p.I17N	0.967	NULL	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RasGAP_C,PatternScan_WW_DOMAIN_1,HMMPfam_CH,HMMSmart_SM00033,HMMPfam_RasGAP,HMMSmart_SM00323,PatternScan_RAS_GTPASE_ACTIV_1,superfamily_GTPase activation domain GAP,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
IQUB	0	genome.wustl.edu	37	7	123150084	123150084	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	123150084	123150084	C	G	SNP	IQUB	NM_178827.4	human	genbank	58_37c	-1	validated	missense	c.403	p.V135L	0.993	HMMPfam_DUF2021,superfamily_Ubiquitin-like	HMMPfam_DUF2021,superfamily_Ubiquitin-like	-	no_errors
ITPR3	0	genome.wustl.edu	37	6	33647763	33647763	+	Silent	SNP	C	T	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	6	33647763	33647763	C	T	SNP	ITPR3	NM_002224.2	human	genbank	58_37c	+1	validated	silent	c.4077	p.H1359	1.000	NULL	HMMPfam_RYDR_ITPR,HMMPfam_MIR,superfamily_MIR,HMMPfam_Ion_trans,HMMPfam_RIH_assoc,HMMPfam_Ins145_P3_rec,HMMSmart_MIR,superfamily_SSF100909	-	no_errors
KLHL35	0	genome.wustl.edu	37	11	75136581	75136581	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	75136581	75136581	C	T	SNP	KLHL35	NM_001039548.2	human	genbank	58_37c	-1	validated	missense	c.571	p.V191M	1.000	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain	HMMPfam_Kelch_1,HMMSmart_SM00612,superfamily_Galactose oxidase central domain,HMMPfam_Kelch_2,HMMPfam_BACK	-	no_errors
LAMA1	0	genome.wustl.edu	37	18	6993719	6993719	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	18	6993719	6993719	C	A	SNP	LAMA1	NM_005559.2	human	genbank	58_37c	-1	validated	silent	c.4929	p.V1643	0.001	superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I	HMMPfam_Laminin_B,HMMSmart_SM00282,HMMPfam_Laminin_EGF,HMMSmart_SM00180,PatternScan_EGF_LAM_1,HMMSmart_SM00181,HMMPfam_Laminin_N,HMMSmart_SM00136,superfamily_Galactose-binding domain-like,superfamily_Concanavalin A-like lectins/glucanases,HMMPfam_Laminin_I,HMMPfam_Laminin_II,HMMPfam_Laminin_G_1,HMMPfam_Laminin_G_2,PatternScan_EGF_1,PatternScan_EGF_2,HMMSmart_SM00281,superfamily_EGF/Laminin	-	no_errors
LOC100130353	0	genome.wustl.edu	37	11	119274431	119274431	+	RNA	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	119274431	119274431	C	G	SNP	LOC100130353	XR_078444.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	0.186	-	-	-	no_errors
LOC100287197	0	genome.wustl.edu	37	7	56889331	56889331	+	RNA	SNP	C	G	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	56889331	56889331	C	G	SNP	LOC100287197	XR_078364.1	human	genbank	58_37c	-1	model	rna	NULL	NULL	0.976	-	-	-	pseudogene
LOC100288073	0	genome.wustl.edu	37	4	165111186	165111186	+	RNA	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	165111186	165111186	G	T	SNP	LOC100288073	XR_078312.1	human	genbank	58_37c	+1	model	rna	NULL	NULL	1.000	-	-	-	pseudogene
LOC728683	0	genome.wustl.edu	37	9	68371812	68371814	+	In_Frame_Del	DEL	CTT	CTT	-	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	CTT	CTT					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	9	68371812	68371814	CTT	-	DEL	LOC728683	XM_001128151.2	human	genbank	58_37c	-1	model	in_frame_del	c.618_616	p.K206in_frame_del	1.000:1.000:1.000	HMMPfam_7tm_1	HMMPfam_7tm_1	-	no_errors
LRCH2	0	genome.wustl.edu	37	X	114357648	114357648	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	114357648	114357648	G	A	SNP	LRCH2	NM_020871.3	human	genbank	58_37c	-1	validated	missense	c.1957	p.R653C	1.000	HMMPfam_CH,HMMSmart_CH,superfamily_Calponin-homology	HMMPfam_LRR_1,HMMPfam_CH,HMMSmart_CH,HMMSmart_LRR_TYP,superfamily_Calponin-homology,superfamily_SSF52058	-	no_errors
LRP1B	0	genome.wustl.edu	37	2	141597642	141597642	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	2	141597642	141597642	C	A	SNP	LRP1B	NM_018557.2	human	genbank	58_37c	-1	validated	missense	c.5127	p.W1709C	1.000	HMMPfam_Ldl_recept_b,HMMSmart_LY,superfamily_SSF63825	HMMPfam_Ldl_recept_b,HMMSmart_LY,PatternScan_ASX_HYDROXYL,HMMPfam_NHL,HMMSmart_EGF_CA,HMMPfam_Ldl_recept_a,HMMSmart_LDLa,PatternScan_LDLRA_1,superfamily_LDL_rcpt_classA_cys-rich,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,HMMPfam_EGF_CA,HMMPfam_EGF_2,PatternScan_EGF_CA,superfamily_SSF57196,superfamily_SSF63825	-	no_errors
MAGEC1	0	genome.wustl.edu	37	X	140995860	140995860	+	Silent	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	140995860	140995860	C	A	SNP	MAGEC1	NM_005462.4	human	genbank	58_37c	+1	reviewed	silent	c.2670	p.S890	0.000	NULL	HMMPfam_MAGE	-	no_errors
MED22	0	genome.wustl.edu	37	9	136212104	136212104	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	9	136212104	136212104	C	G	SNP	MED22	NM_133640.3	human	genbank	58_37c	-1	reviewed	missense	c.127	p.E43Q	1.000	HMMPfam_SURF5	HMMPfam_SURF5	-	no_errors
MGAM	0	genome.wustl.edu	37	7	141786092	141786092	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	141786092	141786092	C	T	SNP	MGAM	ENST00000475668	human	ensembl	58_37c	+1	known	silent	c.6714	p.I2238	1.000	HMMPfam_Glyco_hydro_31,superfamily_(Trans)glycosidases	HMMPfam_Glyco_hydro_31,PatternScan_GLYCOSYL_HYDROL_F31_1,PatternScan_GLYCOSYL_HYDROL_F31_2,HMMPfam_Trefoil,HMMSmart_SM00018,superfamily_Trefoil,superfamily_(Trans)glycosidases,PatternScan_P_TREFOIL	-	no_errors
MT-CO2	0	genome.wustl.edu	37	MT	7775	7775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	MT	7775	7775	G	A	SNP	MT-CO2	ENST00000361739	human	ensembl	58_37c	+1	known	missense	c.190	p.V64I	NULL	HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	PatternScan_COX2,HMMPfam_COX2,superfamily_Cupredoxins,HMMPfam_COX2_TM,superfamily_Cytochrome c oxidase subunit II-like transmembrane region	-	mismatch_between_exon_seq_and_reference
MXRA5	0	genome.wustl.edu	37	X	3241188	3241188	+	Silent	SNP	A	A	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	X	3241188	3241188	A	C	SNP	MXRA5	NM_015419.3	human	genbank	58_37c	-1	reviewed	silent	c.2538	p.P846	0.000	NULL	HMMSmart_SM00013,HMMSmart_SM00082,HMMPfam_LRR_1,HMMSmart_SM00369,HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin,superfamily_L domain-like	-	no_errors
MYO9A	0	genome.wustl.edu	37	15	72320073	72320073	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	15	72320073	72320073	G	A	SNP	MYO9A	NM_006901.2	human	genbank	58_37c	-1	validated	missense	c.997	p.R333W	1.000	HMMPfam_Myosin_head,HMMSmart_SM00242,superfamily_P-loop containing nucleoside triphosphate hydrolases	HMMPfam_IQ,HMMSmart_SM00015,HMMPfam_RA,HMMSmart_SM00314,HMMPfam_RhoGAP,HMMSmart_SM00324,HMMPfam_Myosin_head,HMMSmart_SM00242,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,superfamily_GTPase activation domain GAP,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Cysteine-rich domain	-	no_errors
MYOF	0	genome.wustl.edu	37	10	95069836	95069836	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	95069836	95069836	C	T	SNP	MYOF	NM_013451.3	human	genbank	58_37c	-1	reviewed	missense	c.6088	p.G2030S	0.825	NULL	HMMPfam_C2,HMMSmart_SM00239,HMMSmart_SM00693,HMMSmart_SM00694,superfamily_C2 domain (Calcium/lipid-binding domain CaLB),HMMPfam_FerA,HMMPfam_FerB,HMMPfam_FerI	-	no_errors
NAV3	0	genome.wustl.edu	37	12	78530992	78530992	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	78530992	78530992	G	C	SNP	NAV3	NM_014903.4	human	genbank	58_37c	+1	validated	missense	c.4477	p.G1493R	1.000	NULL	HMMPfam_CH,HMMSmart_SM00033,HMMSmart_SM00382,superfamily_Calponin-homology domain CH-domain,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NFKBIZ	0	genome.wustl.edu	37	3	101572147	101572148	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	101572147	101572148	-	G	INS	NFKBIZ	NM_031419.2	human	genbank	58_37c	+1	reviewed	frame_shift_ins	c.777_778	p.Q260fs	0.906:0.909	NULL	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
NFKBIZ	0	genome.wustl.edu	37	3	101573907	101573907	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	101573907	101573907	G	T	SNP	NFKBIZ	NM_031419.2	human	genbank	58_37c	+1	reviewed	missense	c.1445	p.S482I	1.000	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	HMMPfam_Ank,HMMSmart_SM00248,superfamily_Ankyrin repeat	-	no_errors
NID2	0	genome.wustl.edu	37	14	52493941	52493941	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	14	52493941	52493941	G	A	SNP	NID2	NM_007361.3	human	genbank	58_37c	-1	validated	silent	c.2652	p.A884	0.000	HMMSmart_SM00179,HMMSmart_SM00181,PatternScan_EGF_2,superfamily_EGF/Laminin	HMMPfam_Ldl_recept_b,HMMSmart_SM00135,PatternScan_ASX_HYDROXYL,HMMPfam_Thyroglobulin_1,HMMSmart_SM00211,PatternScan_THYROGLOBULIN_1_1,superfamily_Thyroglobulin type-1 domain,HMMSmart_SM00179,HMMPfam_NIDO,HMMSmart_SM00539,HMMPfam_EGF,HMMSmart_SM00181,HMMPfam_G2F,HMMSmart_SM00682,superfamily_GFP-like,PatternScan_EGF_2,HMMPfam_EGF_CA,PatternScan_EGF_CA,superfamily_EGF/Laminin,superfamily_YWTD domain	-	no_errors
NLRP4	0	genome.wustl.edu	37	19	56372911	56372911	+	Silent	SNP	T	T	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	56372911	56372911	T	G	SNP	NLRP4	NM_134444.4	human	genbank	58_37c	+1	validated	silent	c.2016	p.L672	0.000	superfamily_RNI-like	HMMSmart_SM00368,HMMPfam_PAAD_DAPIN,HMMPfam_NACHT,superfamily_DEATH domain,superfamily_RNI-like,superfamily_P-loop containing nucleoside triphosphate hydrolases	-	no_errors
NOP56	0	genome.wustl.edu	37	20	2636061	2636061	+	Silent	SNP	A	A	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	20	2636061	2636061	A	G	SNP	NOP56	NM_006392.2	human	genbank	58_37c	+1	reviewed	silent	c.660	p.R220	0.423	superfamily_SSF89124	HMMPfam_Nop,HMMPfam_NOP5NT,HMMPfam_NOSIC,superfamily_SSF89124	-	no_errors
NRG3	0	genome.wustl.edu	37	10	84711230	84711232	+	In_Frame_Del	DEL	GAA	GAA	-	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	10	84711230	84711232	GAA	-	DEL	NRG3	NM_001010848.3	human	genbank	58_37c	+1	reviewed	in_frame_del	c.1060_1062	p.E355in_frame_del	1.000:1.000:1.000	HMMPfam_Neuregulin	HMMPfam_Neuregulin,HMMPfam_EGF,HMMSmart_EGF,PatternScan_EGF_1,PatternScan_EGF_2,superfamily_SSF57196	-	no_errors
OAS2	0	genome.wustl.edu	37	12	113435403	113435403	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	113435403	113435403	G	T	SNP	OAS2	NM_016817.2	human	genbank	58_37c	+1	reviewed	missense	c.706	p.G236W	0.909	HMMPfam_OAS1_C,superfamily_PAP/OAS1 substrate-binding domain	HMMPfam_NTP_transf_2,PatternScan_25A_SYNTH_1,PatternScan_25A_SYNTH_2,HMMPfam_OAS1_C,superfamily_Nucleotidyltransferase,superfamily_PAP/OAS1 substrate-binding domain	-	no_errors
OC90	0	genome.wustl.edu	37	8	133058114	133058114	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	8	133058114	133058114	G	A	SNP	OC90	NM_001080399.2	human	genbank	58_37c	-1	validated	silent	c.63	p.D21	1.000	NULL	HMMPfam_Phospholip_A2_1,HMMSmart_SM00085,PatternScan_PA2_HIS,PatternScan_PA2_ASP,superfamily_Phospholipase A2 PLA2	-	no_errors
OR4A5	0	genome.wustl.edu	37	11	51412084	51412084	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	51412084	51412084	G	A	SNP	OR4A5	NM_001005272.3	human	genbank	58_37c	-1	validated	silent	c.312	p.F104	0.000	HMMPfam_7tm_1,superfamily_Family A G protein-coupled receptor-like	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,PatternScan_LECTIN_LEGUME_ALPHA,superfamily_Family A G protein-coupled receptor-like	-	no_errors
OSR2	0	genome.wustl.edu	37	8	99961516	99961516	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	8	99961516	99961516	C	G	SNP	OSR2	NM_001142462.1	human	genbank	58_37c	+1	validated	missense	c.336	p.D112E	1.000	NULL	HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
PANX3	0	genome.wustl.edu	37	11	124481538	124481538	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	124481538	124481538	G	A	SNP	PANX3	NM_052959.2	human	genbank	58_37c	+1	reviewed	missense	c.86	p.R29H	0.966	NULL	NULL	-	no_errors
PCDHAC1	0	genome.wustl.edu	37	5	140307514	140307514	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	140307514	140307514	C	T	SNP	PCDHAC1	NM_018898.3	human	genbank	58_37c	+1	reviewed	missense	c.1037	p.S346L	0.001	HMMPfam_Cadherin,superfamily_Cadherin-like	HMMPfam_Cadherin,HMMSmart_SM00112,PatternScan_CADHERIN_1,HMMPfam_Cadherin_2,superfamily_Cadherin-like	-	no_errors
PDE11A	0	genome.wustl.edu	37	2	178681608	178681608	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	2	178681608	178681608	A	G	SNP	PDE11A	NM_016953.3	human	genbank	58_37c	-1	reviewed	missense	c.1685	p.I562T	1.000	HMMSmart_SM00065,superfamily_GAF domain-like	HMMPfam_PDEase_I,PatternScan_PDEASE_I,HMMPfam_GAF,HMMSmart_SM00065,HMMSmart_SM00471,superfamily_HD-domain/PDEase-like,superfamily_GAF domain-like	-	no_errors
PDYN	0	genome.wustl.edu	37	20	1961172	1961172	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	20	1961172	1961172	C	G	SNP	PDYN	NM_024411.2	human	genbank	58_37c	-1	reviewed	missense	c.562	p.E188Q	0.998	NULL	HMMPfam_Opiods_neuropep,PatternScan_OPIOIDS_PRECURSOR	-	no_errors
PHF20L1	0	genome.wustl.edu	37	8	133849986	133849986	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	8	133849986	133849986	C	T	SNP	PHF20L1	NM_016018.4	human	genbank	58_37c	+1	validated	silent	c.2121	p.S707	0.652	superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	HMMSmart_SM00333,superfamily_FYVE/PHD zinc finger,HMMSmart_SM00743,PatternScan_ZF_PHD_1,HMMPfam_PHD,superfamily_Tudor/PWWP/MBT	-	no_errors
POLD1	0	genome.wustl.edu	37	19	50905959	50905959	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	50905959	50905959	C	T	SNP	POLD1	NM_002691.2	human	genbank	58_37c	+1	validated	missense	c.931	p.R311C	1.000	HMMPfam_DNA_pol_B_exo,HMMSmart_POLBc,superfamily_RNaseH_fold	HMMPfam_DNA_pol_B_exo,HMMPfam_DNA_pol_B,HMMSmart_POLBc,superfamily_RNaseH_fold,PatternScan_DNA_POLYMERASE_B,superfamily_SSF56672	-	no_errors
POM121L10P	0	genome.wustl.edu	37	22	25043061	25043062	+	RNA	INS	-	-	CCGG	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	22	25043061	25043062	-	CCGG	INS	POM121L10P	NR_024593.1	human	genbank	58_37c	-1	validated	rna	NULL	NULL	1.000:1.000	-	-	-	pseudogene
PRKD3	0	genome.wustl.edu	37	2	37501751	37501751	+	Silent	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	2	37501751	37501751	G	T	SNP	PRKD3	NM_005813.3	human	genbank	58_37c	-1	reviewed	silent	c.1464	p.I488	1.000	HMMPfam_PH,HMMSmart_SM00233,superfamily_PH domain-like	HMMSmart_SM00219,HMMPfam_PH,HMMSmart_SM00233,HMMPfam_C1_1,HMMSmart_SM00109,PatternScan_ZF_DAG_PE_1,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase,superfamily_PH domain-like,superfamily_Cysteine-rich domain	-	no_errors
PTPN14	0	genome.wustl.edu	37	1	214568293	214568293	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	214568293	214568293	C	T	SNP	PTPN14	NM_005401.4	human	genbank	58_37c	-1	reviewed	silent	c.795	p.S265	0.000	superfamily_SSF50729	HMMPfam_Y_phosphatase,HMMSmart_PTPc,PatternScan_TYR_PHOSPHATASE_1,HMMPfam_FERM_N,PatternScan_FERM_1,PatternScan_FERM_2,HMMPfam_FERM_M,superfamily_FERM_3-hlx,HMMSmart_B41,superfamily_SSF50729,superfamily_SSF52799,superfamily_SSF54236	-	no_errors
RAET1G	0	genome.wustl.edu	37	6	150239333	150239333	+	Silent	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	6	150239333	150239333	C	G	SNP	RAET1G	NM_001001788.2	human	genbank	58_37c	-1	provisional	silent	c.819	p.L273	0.000	NULL	HMMPfam_MHC_I,superfamily_MHC antigen-recognition domain	-	no_errors
RAX2	0	genome.wustl.edu	37	19	3771698	3771698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	3771698	3771698	C	T	SNP	RAX2	NM_032753.3	human	genbank	58_37c	-1	reviewed	missense	c.43	p.G15S	0.003	NULL	HMMPfam_Homeobox,HMMSmart_HOX,superfamily_Homeodomain_like,PatternScan_HOMEOBOX_1	-	no_errors
SDK1	0	genome.wustl.edu	37	7	4153064	4153064	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	7	4153064	4153064	G	A	SNP	SDK1	NM_152744.3	human	genbank	58_37c	+1	validated	missense	c.3578	p.R1193H	1.000	HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_fn3,HMMSmart_SM00060,superfamily_Fibronectin type III,HMMPfam_I-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
SH3D19	0	genome.wustl.edu	37	4	152043323	152043323	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	152043323	152043323	C	A	SNP	SH3D19	NM_001009555.3	human	genbank	58_37c	-1	validated	missense	c.2293	p.D765Y	1.000	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain	HMMPfam_SH3_1,HMMSmart_SM00326,superfamily_SH3-domain,HMMPfam_SH3_2	-	no_errors
SLC17A6	0	genome.wustl.edu	37	11	22397628	22397628	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	22397628	22397628	T	A	SNP	SLC17A6	NM_020346.2	human	genbank	58_37c	+1	validated	missense	c.1275	p.F425L	1.000	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	HMMPfam_MFS_1,superfamily_MFS_gen_substrate_transporter	-	no_errors
SLC22A7	0	genome.wustl.edu	37	6	43269378	43269378	+	Silent	SNP	C	C	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	6	43269378	43269378	C	T	SNP	SLC22A7	NM_153320.2	human	genbank	58_37c	+1	reviewed	silent	c.1009	p.L337	0.999	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
SLC39A6	0	genome.wustl.edu	37	18	33691125	33691125	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	18	33691125	33691125	C	A	SNP	SLC39A6	NM_012319.3	human	genbank	58_37c	-1	validated	missense	c.2012	p.G671V	1.000	HMMPfam_Zip	HMMPfam_Zip	-	no_errors
SLC5A5	0	genome.wustl.edu	37	19	18004631	18004631	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	18004631	18004631	G	T	SNP	SLC5A5	NM_000453.2	human	genbank	58_37c	+1	reviewed	missense	c.1877	p.W626L	0.079	NULL	HMMPfam_SSF,PatternScan_NA_SOLUT_SYMP_1,PatternScan_NA_SOLUT_SYMP_2	-	no_errors
SMARCC2	0	genome.wustl.edu	37	12	56580003	56580003	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	12	56580003	56580003	T	C	SNP	SMARCC2	NM_003075.3	human	genbank	58_37c	-1	reviewed	missense	c.253	p.K85E	1.000	NULL	HMMSmart_SM00298,HMMSmart_SM00717,superfamily_BRCT domain,HMMPfam_SWIRM,superfamily_Homeodomain-like,HMMPfam_Myb_DNA-binding	-	no_errors
SNX25	0	genome.wustl.edu	37	4	186274707	186274707	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	186274707	186274707	G	T	SNP	SNX25	NM_031953.2	human	genbank	58_37c	+1	validated	missense	c.2043	p.L681F	1.000	NULL	HMMPfam_RGS,HMMSmart_RGS,HMMPfam_PX,HMMSmart_PX,superfamily_PX,HMMPfam_PXA,HMMPfam_Nexin_C,superfamily_Regulat_G_prot_signal_superfam	-	no_errors
SSRP1	0	genome.wustl.edu	37	11	57093910	57093910	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	11	57093910	57093910	C	G	SNP	SSRP1	NM_003146.2	human	genbank	58_37c	-1	reviewed	missense	c.2101	p.E701Q	1.000	NULL	HMMPfam_HMG_box,HMMSmart_HMG,HMMPfam_SSrecog,superfamily_HMG-box	-	no_errors
STARD9	0	genome.wustl.edu	37	15	42982291	42982291	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	15	42982291	42982291	G	A	SNP	STARD9	XM_001129482.3	human	genbank	58_37c	+1	model	missense	c.8257	p.E2753K	0.001	NULL	HMMPfam_Kinesin,HMMSmart_SM00129,superfamily_SMAD/FHA domain,PatternScan_KINESIN_MOTOR_DOMAIN1,superfamily_P-loop containing nucleoside triphosphate hydrolases,superfamily_Bet v1-like	-	no_errors
SV2A	0	genome.wustl.edu	37	1	149880762	149880762	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	149880762	149880762	C	A	SNP	SV2A	NM_014849.3	human	genbank	58_37c	-1	validated	missense	c.1361	p.W454L	1.000	HMMPfam_MFS_1,superfamily_MFS general substrate transporter	PatternScan_SUGAR_TRANSPORT_2,HMMPfam_MFS_1,superfamily_MFS general substrate transporter	-	no_errors
TDO2	0	genome.wustl.edu	37	4	156825222	156825222	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	156825222	156825222	A	G	SNP	TDO2	NM_005651.2	human	genbank	58_37c	+1	validated	missense	c.88	p.T30A	0.108	HMMPfam_Trp_dioxygenase	HMMPfam_Trp_dioxygenase	-	no_errors
TF	0	genome.wustl.edu	37	3	133473400	133473400	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	133473400	133473400	C	A	SNP	TF	NM_001063.3	human	genbank	58_37c	+1	reviewed	missense	c.387	p.N129K	0.000	HMMPfam_Transferrin,HMMSmart_SM00094,superfamily_Periplasmic binding protein-like II	HMMPfam_Transferrin,HMMSmart_SM00094,PatternScan_TRANSFERRIN_1,PatternScan_TRANSFERRIN_2,PatternScan_TRANSFERRIN_3,superfamily_Periplasmic binding protein-like II	-	no_errors
TSHZ1	0	genome.wustl.edu	37	18	72998785	72998785	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	18	72998785	72998785	C	G	SNP	TSHZ1	NM_005786.4	human	genbank	58_37c	+1	reviewed	missense	c.1288	p.H430D	0.879	NULL	HMMPfam_Homeobox,HMMSmart_SM00389,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
TSKS	0	genome.wustl.edu	37	19	50266424	50266424	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	50266424	50266424	G	C	SNP	TSKS	NM_021733.1	human	genbank	58_37c	-1	reviewed	missense	c.81	p.S27R	0.012	NULL	NULL	-	no_errors
USP36	0	genome.wustl.edu	37	17	76798549	76798554	+	In_Frame_Del	DEL	TTTTTC	TTTTTC	-	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	TTTTTC	TTTTTC					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	17	76798549	76798554	TTTTTC	-	DEL	USP36	NM_025090.3	human	genbank	58_37c	-1	validated	in_frame_del	c.2879_2874	p.KK959in_frame_del	0.178:0.173:0.043:0.038:0.100:0.107	NULL	HMMPfam_UCH,PatternScan_IG_MHC,PatternScan_UCH_2_1,PatternScan_UCH_2_2,superfamily_SSF54001	-	no_errors
WDR64	0	genome.wustl.edu	37	1	241936093	241936093	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	1	241936093	241936093	G	T	SNP	WDR64	ENST00000366552	human	ensembl	58_37c	+1	known	splice_site	c.2261-1	e19-1	0.731	-	-	-	no_errors
XRCC4	0	genome.wustl.edu	37	5	82500683	82500683	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	5	82500683	82500683	G	A	SNP	XRCC4	NM_022406.2	human	genbank	58_37c	+1	reviewed	missense	c.688	p.D230N	1.000	HMMPfam_XRCC4	superfamily_XRCC4 N-terminal domain,HMMPfam_XRCC4	-	no_errors
ZBTB38	0	genome.wustl.edu	37	3	141162010	141162010	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	3	141162010	141162010	G	A	SNP	ZBTB38	NM_001080412.2	human	genbank	58_37c	+1	validated	silent	c.780	p.P260	0.000	NULL	HMMSmart_BTB,HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,superfamily_BTB/POZ_fold,HMMPfam_BTB,HMMSmart_ZnF_C2H2,superfamily_SSF57667	-	no_errors
ZNF718	0	genome.wustl.edu	37	4	155300	155300	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	4	155300	155300	A	C	SNP	ZNF718	NM_001039127.3	human	genbank	58_37c	+1	provisional	missense	c.637	p.N213H	0.991	NULL	NULL	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region
ZNF829	0	genome.wustl.edu	37	19	37398926	37398926	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	37398926	37398926	C	G	SNP	ZNF829	NM_001037232.3	human	genbank	58_37c	-1	validated	missense	c.224	p.G75A	1.000	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352)	HMMPfam_KRAB,HMMSmart_SM00349,superfamily_KRAB domain (Kruppel-associated box Pfam 01352),HMMPfam_zf-C2H2,PatternScan_ZINC_FINGER_C2H2_1,HMMSmart_SM00355,superfamily_C2H2 and C2HC zinc fingers	-	no_errors
ZSWIM4	0	genome.wustl.edu	37	19	13934173	13934173	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1NA-01A-11D-A142-09	TCGA-E9-A1NA-10A-01D-A142-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	a3d223eb-20e6-40b9-9f07-e5f865bd2439	6c9a17cd-a638-47f4-ba5d-3ec57d96b56e	19	13934173	13934173	G	A	SNP	ZSWIM4	NM_023072.2	human	genbank	58_37c	+1	validated	missense	c.1723	p.E575K	1.000	NULL	HMMPfam_SWIM	-	no_errors
