Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error
ASXL3	0	genome.wustl.edu	37	18	31325521	31325521	+	Silent	SNP	G	G	A	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	18	31325521	31325521	G	A	SNP	ASXL3	NM_030632.1	human	genbank	58_37c	+1	provisional	silent	c.5709	p.S1903	0.003	NULL	NULL	-	no_errors
C1QTNF3	0	genome.wustl.edu	37	5	34024111	34024111	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	5	34024111	34024111	C	A	SNP	C1QTNF3	NM_181435.4	human	genbank	58_37c	-1	validated	missense	c.703	p.V235L	1.000	HMMPfam_C1q,HMMSmart_C1Q,superfamily_TNF_like	HMMPfam_C1q,HMMSmart_C1Q,HMMPfam_Collagen,superfamily_TNF_like	-	no_errors
C7orf16	0	genome.wustl.edu	37	7	31735165	31735165	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	T	T					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	7	31735165	31735165	T	A	SNP	C7orf16	NM_006658.3	human	genbank	58_37c	+1	validated	missense	c.165	p.N55K	0.005	NULL	NULL	-	no_errors
CCDC66	0	genome.wustl.edu	37	3	56650054	56650055	+	In_Frame_Ins	INS	-	-	CTC	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	-	-					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	3	56650054	56650055	-	CTC	INS	CCDC66	NM_001141947.1	human	genbank	58_37c	+1	validated	in_frame_ins	c.1816_1817	p.607in_frame_insP	0.797:0.972	NULL	NULL	-	no_errors
COL4A5	0	genome.wustl.edu	37	X	107823802	107823802	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	X	107823802	107823802	A	G	SNP	COL4A5	NM_033380.1	human	genbank	58_37c	+1	reviewed	missense	c.820	p.I274V	0.789	HMMPfam_Collagen	HMMPfam_C4,HMMSmart_C4,HMMPfam_Collagen,superfamily_C-type_lectin_fold	-	no_errors
DYRK4	0	genome.wustl.edu	37	12	4708239	4708239	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	12	4708239	4708239	C	A	SNP	DYRK4	NM_003845.1	human	genbank	58_37c	+1	provisional	missense	c.606	p.F202L	1.000	HMMSmart_SM00219,HMMSmart_SM00220,superfamily_Protein kinase-like (PK-like),HMMPfam_Pkinase	HMMSmart_SM00219,HMMSmart_SM00220,PatternScan_PROTEIN_KINASE_ST,superfamily_Protein kinase-like (PK-like),PatternScan_PROTEIN_KINASE_ATP,HMMPfam_Pkinase	-	no_errors
GOLGA6L3	0	genome.wustl.edu	37	15	82934849	82934849	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	15	82934849	82934849	C	T	SNP	GOLGA6L3	ENST00000506294	human	ensembl	58_37c	-1	known	missense	c.731	p.R244H	0.705	NULL	NULL	-	no_errors
LOC100132247	0	genome.wustl.edu	37	16	22545865	22545865	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	16	22545865	22545865	G	C	SNP	LOC100132247	NM_001135865.1	human	genbank	58_37c	+1	validated	missense	c.1561	p.A521P	0.003	HMMPfam_NPIP	HMMPfam_NPIP	-	no_errors
NCAPG	0	genome.wustl.edu	37	4	17819064	17819064	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	4	17819064	17819064	A	T	SNP	NCAPG	NM_022346.3	human	genbank	58_37c	+1	validated	missense	c.956	p.N319I	0.205	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors
PHF12	0	genome.wustl.edu	37	17	27239625	27239625	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	17	27239625	27239625	G	A	SNP	PHF12	NM_001033561.1	human	genbank	58_37c	-1	validated	missense	c.1964	p.T655I	1.000	NULL	HMMSmart_SM00249,superfamily_SMAD/FHA domain,superfamily_FYVE/PHD zinc finger,PatternScan_ZF_PHD_1,HMMPfam_PHD	-	no_errors
PSG1	0	genome.wustl.edu	37	19	43382212	43382212	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	A	A					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	19	43382212	43382212	A	G	SNP	PSG1	NM_006905.2	human	genbank	58_37c	-1	validated	missense	c.283	p.Y95H	0.003	HMMSmart_SM00409,HMMPfam_V-set,superfamily_Immunoglobulin	HMMSmart_SM00408,HMMSmart_SM00409,HMMPfam_V-set,HMMPfam_ig,superfamily_Immunoglobulin	-	no_errors
TACR2	0	genome.wustl.edu	37	10	71175920	71175920	+	Missense_Mutation	SNP	C	C	T	rs151093941	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	C	C					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	10	71175920	71175920	C	T	SNP	TACR2	NM_001057.2	human	genbank	58_37c	-1	validated	missense	c.160	p.V54I	0.965	HMMPfam_7tm_1,superfamily_SSF81321	HMMPfam_7tm_1,PatternScan_G_PROTEIN_RECEP_F1_1,superfamily_SSF81321	-	no_errors
VPS53	0	genome.wustl.edu	37	17	440372	440372	+	Silent	SNP	G	G	A	rs149512470	unknown	TCGA-E9-A1QZ-01A-21D-A167-09	TCGA-E9-A1QZ-10A-01D-A167-09	G	G					Unknown	Unknown	Somatic	Phase_IV	Capture		1	dbGAP	Illumina GAIIx	2d47b244-e5e4-4645-91cb-71de1d685a95	7258e638-3291-484b-9c13-ffed4d7e747a	17	440372	440372	G	A	SNP	VPS53	NM_001128159.1	human	genbank	58_37c	-1	reviewed	silent	c.1911	p.Y637	0.868	NULL	HMMPfam_Vps53_N	-	no_errors
